AlfalfaGEDB | Msa0582620

M. sativa cultivar zhongmu-4 / Msa0582620

KEGG: K02710|K02712
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF02533.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0582620	RDY14692.1	90.722	97	9	0	1	97	4	100	7.75e-56	178

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0582620	sp\|Q49L15\|PSBK_EUCGG	91.667	60	5	0	1	60	1	60	1.80e-32	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0582620	A0A371II05	90.722	97	9	0	1	97	4	100	3.70e-56	178

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa0582620	0.810616	1.055043e-50	-8.615850e-47
Msa0017120	Msa0582620	0.811446	6.974296e-51	-8.615850e-47
Msa0035090	Msa0582620	0.813311	2.729911e-51	-8.615850e-47
Msa0039200	Msa0582620	0.821003	5.085285e-53	-8.615850e-47
Msa0057740	Msa0582620	0.810234	1.275519e-50	-8.615850e-47
Msa0065390	Msa0582620	0.807921	3.991814e-50	-8.615850e-47
Msa0083570	Msa0582620	0.802842	4.630648e-49	-8.615850e-47
Msa0086820	Msa0582620	0.821314	4.313415e-53	-8.615850e-47
Msa0087880	Msa0582620	0.814132	1.799810e-51	-8.615850e-47
Msa0089210	Msa0582620	0.806818	6.838527e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0582620	MtrunA17_Chr4g0015681	96.667	60	2	1	60	1	60	7.64e-35	113
Msa0582620	MtrunA17_CPg0492901	96.667	60	2	1	60	1	60	7.64e-35	113
Msa0582620	MtrunA17_Chr4g0016771	96.667	60	2	1	60	1	60	7.64e-35	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0582620	ATCG00070.1	76.667	60	14	0	1	60	1	60	3.76e-26	92.0
Msa0582620	ATCG00080.1	97.222	36	1	0	62	97	1	36	2.92e-19	73.9

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Find 6 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGATCCAGGACGTAATCC+TGG	0.474800	4_2:+1113756	Msa0582620:CDS
ACTGGCATAAAATCTACAAT+TGG	0.453871	4_2:-1113209	None:intergenic
GGATTCCTATCTAATGATCC+AGG	0.536202	4_2:+1113744	Msa0582620:CDS
TACGTCCTGGATCATTAGAT+AGG	0.581605	4_2:-1113749	None:intergenic
TATGCTTAATATCTTTAGCT+TGG	0.440922	4_2:+1113106	None:intergenic
TCACGTCCAGGATTACGTCC+TGG	0.548081	4_2:-1113762	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGGCATAAAATCTACAAT+TGG	-	chr4_2:1113212-1113231	None:intergenic	30.0%
GCTAAGAGAAAAAAGAGTAA+GGG	-	chr4_2:1113239-1113258	None:intergenic	30.0%
AGCTAAGAGAAAAAAGAGTA+AGG	-	chr4_2:1113240-1113259	None:intergenic	30.0%
CACAATCAAGATCTAGGTAT+TGG	-	chr4_2:1113475-1113494	None:intergenic	35.0%
CAATACCTAGATCTTGATTG+TGG	+	chr4_2:1113473-1113492	Msa0582620:intron	35.0%
CATATCCACAATCAAGATCT+AGG	-	chr4_2:1113481-1113500	None:intergenic	35.0%
GAGAATCTATTCTCTTTCTC+TGG	+	chr4_2:1113625-1113644	Msa0582620:intron	35.0%
GGATTCCTATCTAATGATCC+AGG	+	chr4_2:1113744-1113763	Msa0582620:CDS	40.0%
TACGTCCTGGATCATTAGAT+AGG	-	chr4_2:1113752-1113771	None:intergenic	40.0%
AATGATCCAGGACGTAATCC+TGG	+	chr4_2:1113756-1113775	Msa0582620:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	1113107	1113791	1113107	ID=Msa0582620;Name=Msa0582620
chr4_2	mRNA	1113107	1113791	1113107	ID=Msa0582620-mRNA-1;Parent=Msa0582620;Name=Msa0582620-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0\|0\|0\|1\|0\|0\|2\|0\|97
chr4_2	exon	1113107	1113281	1113107	ID=Msa0582620-mRNA-1:exon:261;Parent=Msa0582620-mRNA-1
chr4_2	exon	1113673	1113791	1113673	ID=Msa0582620-mRNA-1:exon:262;Parent=Msa0582620-mRNA-1
chr4_2	CDS	1113107	1113281	1113107	ID=Msa0582620-mRNA-1:cds;Parent=Msa0582620-mRNA-1
chr4_2	CDS	1113673	1113791	1113673	ID=Msa0582620-mRNA-1:cds;Parent=Msa0582620-mRNA-1

Gene Sequence	>Msa0582620 ATGCTTAATATCTTTAGCTTGGTCTGTATTTGTATTGACTCTGCCCTTTATTCAAGTAGTTTTTTCTTGGCAAAATTACCTGAAGCCTACGCTTTTTTGAATCCAATTGTAGATTTTATGCCAGTAATACCCTTACTCTTTTTTCTCTTAGCTTTTGTTTGGCAAGCTGCTGTAAATTTTGTAATGCTTACTCTAAAACTATTTGTTTACACGATAGTGATATTCTTTGTTTCTCTTTTCATCTTCGGATTCCTATCTAATGATCCAGGACGTAATCCTGGACGTGAAGAATAA
Protein sequence	>Msa0582620 MLNIFSLVCICIDSALYSSSFFLAKLPEAYAFLNPIVDFMPVIPLLFFLLAFVWQAAVNFVMLTLKLFVYTIVIFFVSLFIFGFLSNDPGRNPGREE*