Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1035220 | XP_003625261.1 | 98.305 | 118 | 2 | 0 | 23 | 140 | 22 | 139 | 2.45e-76 | 233 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1035220 | G7KVD7 | 98.305 | 118 | 2 | 0 | 23 | 140 | 22 | 139 | 1.17e-76 | 233 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003080 | Msa1035220 | 0.831107 | 2.013297e-55 | -8.615850e-47 |
Msa0016040 | Msa1035220 | 0.840714 | 7.362963e-58 | -8.615850e-47 |
Msa0019930 | Msa1035220 | 0.821547 | 3.809336e-53 | -8.615850e-47 |
Msa0025160 | Msa1035220 | 0.809459 | 1.872994e-50 | -8.615850e-47 |
Msa0025580 | Msa1035220 | 0.821238 | 4.490507e-53 | -8.615850e-47 |
Msa0027280 | Msa1035220 | 0.814053 | 1.874201e-51 | -8.615850e-47 |
Msa0032970 | Msa1035220 | 0.803022 | 4.250119e-49 | -8.615850e-47 |
Msa0032980 | Msa1035220 | 0.811574 | 6.540870e-51 | -8.615850e-47 |
Msa0035140 | Msa1035220 | 0.843534 | 1.320848e-58 | -8.615850e-47 |
Msa0042640 | Msa1035220 | 0.808208 | 3.468103e-50 | -8.615850e-47 |
Msa0050660 | Msa1035220 | 0.807407 | 5.131377e-50 | -8.615850e-47 |
Msa0050700 | Msa1035220 | 0.807447 | 5.032266e-50 | -8.615850e-47 |
Msa0053070 | Msa1035220 | 0.805736 | 1.155611e-49 | -8.615850e-47 |
Msa0062340 | Msa1035220 | 0.815251 | 1.017122e-51 | -8.615850e-47 |
Msa0067060 | Msa1035220 | 0.802720 | 4.905856e-49 | -8.615850e-47 |
Msa0068150 | Msa1035220 | 0.804611 | 1.987760e-49 | -8.615850e-47 |
Msa0077560 | Msa1035220 | 0.821044 | 4.977892e-53 | -8.615850e-47 |
Msa0091350 | Msa1035220 | 0.802882 | 4.542985e-49 | -8.615850e-47 |
Msa0091360 | Msa1035220 | 0.824437 | 8.075304e-54 | -8.615850e-47 |
Msa0093860 | Msa1035220 | 0.819744 | 9.889799e-53 | -8.615850e-47 |
Msa0115550 | Msa1035220 | 0.824136 | 9.506231e-54 | -8.615850e-47 |
Msa0603980 | Msa1035220 | 0.800397 | 1.468971e-48 | -8.615850e-47 |
Msa0606100 | Msa1035220 | 0.827906 | 1.207715e-54 | -8.615850e-47 |
Msa0607800 | Msa1035220 | 0.838828 | 2.280652e-57 | -8.615850e-47 |
Msa0613630 | Msa1035220 | 0.832229 | 1.064782e-55 | -8.615850e-47 |
Msa0620500 | Msa1035220 | 0.816864 | 4.437741e-52 | -8.615850e-47 |
Msa0621710 | Msa1035220 | 0.846080 | 2.719152e-59 | -8.615850e-47 |
Msa0625620 | Msa1035220 | 0.801150 | 1.031320e-48 | -8.615850e-47 |
Msa0647050 | Msa1035220 | 0.821037 | 4.994951e-53 | -8.615850e-47 |
Msa0648040 | Msa1035220 | 0.820058 | 8.382862e-53 | -8.615850e-47 |
Msa0657700 | Msa1035220 | 0.813211 | 2.870842e-51 | -8.615850e-47 |
Msa0658640 | Msa1035220 | 0.818266 | 2.143698e-52 | -8.615850e-47 |
Msa0659150 | Msa1035220 | 0.801583 | 8.408616e-49 | -8.615850e-47 |
Msa0661150 | Msa1035220 | 0.817101 | 3.927117e-52 | -8.615850e-47 |
Msa0666700 | Msa1035220 | 0.847923 | 8.506587e-60 | -8.615850e-47 |
Msa0668900 | Msa1035220 | 0.814233 | 1.709881e-51 | -8.615850e-47 |
Msa0687090 | Msa1035220 | 0.812110 | 4.999356e-51 | -8.615850e-47 |
Msa0690740 | Msa1035220 | 0.820086 | 8.258371e-53 | -8.615850e-47 |
Msa0698730 | Msa1035220 | 0.835969 | 1.231248e-56 | -8.615850e-47 |
Msa0702810 | Msa1035220 | 0.800455 | 1.429997e-48 | -8.615850e-47 |
Msa0703600 | Msa1035220 | 0.807019 | 6.201785e-50 | -8.615850e-47 |
Msa0709200 | Msa1035220 | 0.804372 | 2.230022e-49 | -8.615850e-47 |
Msa0709440 | Msa1035220 | 0.847359 | 1.216005e-59 | -8.615850e-47 |
Msa0714520 | Msa1035220 | 0.816256 | 6.075004e-52 | -8.615850e-47 |
Msa0717900 | Msa1035220 | 0.806811 | 6.863114e-50 | -8.615850e-47 |
Msa0722220 | Msa1035220 | 0.812757 | 3.611086e-51 | -8.615850e-47 |
Msa0735780 | Msa1035220 | 0.851230 | 1.016260e-60 | -8.615850e-47 |
Msa0737990 | Msa1035220 | 0.816396 | 5.651286e-52 | -8.615850e-47 |
Msa0740710 | Msa1035220 | 0.802858 | 4.594436e-49 | -8.615850e-47 |
Msa0743440 | Msa1035220 | 0.801673 | 8.056817e-49 | -8.615850e-47 |
Msa0745720 | Msa1035220 | 0.809269 | 2.057095e-50 | -8.615850e-47 |
Msa0747740 | Msa1035220 | 0.802568 | 5.274558e-49 | -8.615850e-47 |
Msa0756820 | Msa1035220 | 0.808456 | 3.069548e-50 | -8.615850e-47 |
Msa0758650 | Msa1035220 | 0.836390 | 9.622277e-57 | -8.615850e-47 |
Msa0761670 | Msa1035220 | 0.827436 | 1.566586e-54 | -8.615850e-47 |
Msa0773630 | Msa1035220 | 0.824119 | 9.593541e-54 | -8.615850e-47 |
Msa0773670 | Msa1035220 | 0.827762 | 1.307606e-54 | -8.615850e-47 |
Msa0780910 | Msa1035220 | 0.845989 | 2.878694e-59 | -8.615850e-47 |
Msa0811020 | Msa1035220 | 0.806775 | 6.982625e-50 | -8.615850e-47 |
Msa0818880 | Msa1035220 | 0.810047 | 1.399697e-50 | -8.615850e-47 |
Msa0821160 | Msa1035220 | 0.850185 | 1.999396e-60 | -8.615850e-47 |
Msa0828970 | Msa1035220 | 0.801931 | 7.132166e-49 | -8.615850e-47 |
Msa0121330 | Msa1035220 | 0.825629 | 4.223908e-54 | -8.615850e-47 |
Msa0122330 | Msa1035220 | 0.840723 | 7.322373e-58 | -8.615850e-47 |
Msa0123070 | Msa1035220 | 0.810850 | 9.391716e-51 | -8.615850e-47 |
Msa0127340 | Msa1035220 | 0.802520 | 5.397146e-49 | -8.615850e-47 |
Msa0140280 | Msa1035220 | 0.807170 | 5.761984e-50 | -8.615850e-47 |
Msa0140380 | Msa1035220 | 0.819406 | 1.180906e-52 | -8.615850e-47 |
Msa0146650 | Msa1035220 | 0.813460 | 2.531688e-51 | -8.615850e-47 |
Msa0165830 | Msa1035220 | 0.805642 | 1.209818e-49 | -8.615850e-47 |
Msa0166170 | Msa1035220 | 0.805154 | 1.530580e-49 | -8.615850e-47 |
Msa0176060 | Msa1035220 | 0.808770 | 2.630901e-50 | -8.615850e-47 |
Msa0200050 | Msa1035220 | 0.828434 | 9.010204e-55 | -8.615850e-47 |
Msa0213610 | Msa1035220 | 0.801065 | 1.073277e-48 | -8.615850e-47 |
Msa0232760 | Msa1035220 | 0.828031 | 1.126829e-54 | -8.615850e-47 |
Msa0233020 | Msa1035220 | 0.838309 | 3.104696e-57 | -8.615850e-47 |
Msa0233070 | Msa1035220 | 0.804074 | 2.572097e-49 | -8.615850e-47 |
Msa0367520 | Msa1035220 | 0.840479 | 8.483124e-58 | -8.615850e-47 |
Msa0373500 | Msa1035220 | 0.821604 | 3.695466e-53 | -8.615850e-47 |
Msa0380670 | Msa1035220 | 0.823293 | 1.497609e-53 | -8.615850e-47 |
Msa0381730 | Msa1035220 | 0.800383 | 1.478598e-48 | -8.615850e-47 |
Msa0383000 | Msa1035220 | 0.818396 | 2.003088e-52 | -8.615850e-47 |
Msa0400000 | Msa1035220 | 0.841290 | 5.198301e-58 | -8.615850e-47 |
Msa0422050 | Msa1035220 | 0.839209 | 1.816386e-57 | -8.615850e-47 |
Msa0430300 | Msa1035220 | 0.804069 | 2.578757e-49 | -8.615850e-47 |
Msa0430480 | Msa1035220 | 0.803952 | 2.726164e-49 | -8.615850e-47 |
Msa0431200 | Msa1035220 | 0.800994 | 1.109668e-48 | -8.615850e-47 |
Msa0432010 | Msa1035220 | 0.859660 | 3.547439e-63 | -8.615850e-47 |
Msa0433150 | Msa1035220 | 0.830653 | 2.601299e-55 | -8.615850e-47 |
Msa0447750 | Msa1035220 | 0.806683 | 7.300975e-50 | -8.615850e-47 |
Msa0466880 | Msa1035220 | 0.817185 | 3.759171e-52 | -8.615850e-47 |
Msa0468700 | Msa1035220 | 0.814424 | 1.551892e-51 | -8.615850e-47 |
Msa0480730 | Msa1035220 | 0.807887 | 4.058868e-50 | -8.615850e-47 |
Msa0481890 | Msa1035220 | 0.846607 | 1.953439e-59 | -8.615850e-47 |
Msa1033920 | Msa1035220 | 0.837584 | 4.768365e-57 | -8.615850e-47 |
Msa1035220 | Msa1035570 | 0.840650 | 7.651691e-58 | -8.615850e-47 |
Msa1035220 | Msa1035610 | 0.845884 | 3.073621e-59 | -8.615850e-47 |
Msa1035220 | Msa1037540 | 0.813465 | 2.524942e-51 | -8.615850e-47 |
Msa1035220 | Msa1042190 | 0.804156 | 2.472711e-49 | -8.615850e-47 |
Msa1035220 | Msa1042880 | 0.813655 | 2.292721e-51 | -8.615850e-47 |
Msa1035220 | Msa1059020 | 0.823651 | 1.235136e-53 | -8.615850e-47 |
Msa1035220 | Msa1078880 | 0.804526 | 2.070405e-49 | -8.615850e-47 |
Msa1035220 | Msa1078970 | 0.806721 | 7.170534e-50 | -8.615850e-47 |
Msa1035220 | Msa1081390 | 0.838984 | 2.077796e-57 | -8.615850e-47 |
Msa1035220 | Msa1082200 | 0.826277 | 2.962876e-54 | -8.615850e-47 |
Msa1035220 | Msa1082380 | 0.828353 | 9.427448e-55 | -8.615850e-47 |
Msa1035220 | Msa1084530 | 0.845178 | 4.774319e-59 | -8.615850e-47 |
Msa1035220 | Msa1090140 | 0.824466 | 7.950550e-54 | -8.615850e-47 |
Msa1035220 | Msa1114630 | 0.815036 | 1.135762e-51 | -8.615850e-47 |
Msa1035220 | Msa1116190 | 0.815991 | 6.959031e-52 | -8.615850e-47 |
Msa1035220 | Msa1116220 | 0.850129 | 2.073143e-60 | -8.615850e-47 |
Msa1035220 | Msa1116660 | 0.850701 | 1.431954e-60 | -8.615850e-47 |
Msa1035220 | Msa1116740 | 0.813560 | 2.406016e-51 | -8.615850e-47 |
Msa1035220 | Msa1125820 | 0.853018 | 3.152562e-61 | -8.615850e-47 |
Msa1035220 | Msa1125990 | 0.850443 | 1.692122e-60 | -8.615850e-47 |
Msa1035220 | Msa1127280 | 0.823626 | 1.251692e-53 | -8.615850e-47 |
Msa1035220 | Msa1132530 | 0.832518 | 9.031049e-56 | -8.615850e-47 |
Msa1035220 | Msa1139050 | 0.805735 | 1.156161e-49 | -8.615850e-47 |
Msa1035220 | Msa1159590 | 0.816555 | 5.207145e-52 | -8.615850e-47 |
Msa1035220 | Msa1162590 | 0.813726 | 2.212337e-51 | -8.615850e-47 |
Msa1035220 | Msa1162880 | 0.843805 | 1.118092e-58 | -8.615850e-47 |
Msa1035220 | Msa1165480 | 0.821598 | 3.707964e-53 | -8.615850e-47 |
Msa1035220 | Msa1171290 | 0.841305 | 5.151834e-58 | -8.615850e-47 |
Msa1035220 | Msa1214350 | 0.833992 | 3.877402e-56 | -8.615850e-47 |
Msa1035220 | Msa1215980 | 0.817001 | 4.134525e-52 | -8.615850e-47 |
Msa1035220 | Msa1218820 | 0.818450 | 1.947774e-52 | -8.615850e-47 |
Msa1035220 | Msa1223390 | 0.801981 | 6.964920e-49 | -8.615850e-47 |
Msa1035220 | Msa1226520 | 0.816716 | 4.790114e-52 | -8.615850e-47 |
Msa1035220 | Msa1244240 | 0.828292 | 9.750708e-55 | -8.615850e-47 |
Msa1035220 | Msa1254540 | 0.867063 | 1.803841e-65 | -8.615850e-47 |
Msa1035220 | Msa1263740 | 0.830878 | 2.290896e-55 | -8.615850e-47 |
Msa1035220 | Msa1263780 | 0.850403 | 1.737393e-60 | -8.615850e-47 |
Msa1035220 | Msa1263900 | 0.822222 | 2.658246e-53 | -8.615850e-47 |
Msa1035220 | Msa1294460 | 0.823960 | 1.045160e-53 | -8.615850e-47 |
Msa1035220 | Msa1300460 | 0.814606 | 1.414412e-51 | -8.615850e-47 |
Msa1035220 | Msa1306790 | 0.800734 | 1.254083e-48 | -8.615850e-47 |
Msa1035220 | Msa1321340 | 0.802143 | 6.453004e-49 | -8.615850e-47 |
Msa1035220 | Msa1321530 | 0.806265 | 8.947650e-50 | -8.615850e-47 |
Msa1035220 | Msa1332950 | 0.819183 | 1.327640e-52 | -8.615850e-47 |
Msa1035220 | Msa1339170 | 0.819210 | 1.309257e-52 | -8.615850e-47 |
Msa1035220 | Msa1343170 | 0.804921 | 1.713006e-49 | -8.615850e-47 |
Msa1035220 | Msa1343180 | 0.821998 | 2.996214e-53 | -8.615850e-47 |
Msa1035220 | Msa1359690 | 0.802141 | 6.459297e-49 | -8.615850e-47 |
Msa1035220 | Msa1361930 | 0.812630 | 3.848241e-51 | -8.615850e-47 |
Msa1035220 | Msa1364410 | 0.810693 | 1.015093e-50 | -8.615850e-47 |
Msa1035220 | Msa1367180 | 0.817741 | 2.817393e-52 | -8.615850e-47 |
Msa1035220 | Msa1368750 | 0.859132 | 5.108727e-63 | -8.615850e-47 |
Msa1035220 | Msa1374790 | 0.860592 | 1.854960e-63 | -8.615850e-47 |
Msa1035220 | Msa1380120 | 0.803750 | 3.002677e-49 | -8.615850e-47 |
Msa1035220 | Msa1387440 | 0.808151 | 3.566409e-50 | -8.615850e-47 |
Msa1035220 | Msa1387500 | 0.810811 | 9.571512e-51 | -8.615850e-47 |
Msa1035220 | Msa1406720 | 0.801465 | 8.891958e-49 | -8.615850e-47 |
Msa1035220 | Msa1409410 | 0.839599 | 1.439354e-57 | -8.615850e-47 |
Msa1035220 | Msa1446100 | 0.801490 | 8.786404e-49 | -8.615850e-47 |
Msa1035220 | Msa1447170 | 0.845727 | 3.390752e-59 | -8.615850e-47 |
Msa1035220 | Msa1450190 | 0.833280 | 5.838517e-56 | -8.615850e-47 |
Msa1035220 | Msa1451820 | 0.859192 | 4.903181e-63 | -8.615850e-47 |
Msa1035220 | Msa1454010 | 0.802532 | 5.365924e-49 | -8.615850e-47 |
Msa0272260 | Msa1035220 | 0.818974 | 1.481494e-52 | -8.615850e-47 |
Msa0298470 | Msa1035220 | 0.811209 | 7.847845e-51 | -8.615850e-47 |
Msa0358680 | Msa1035220 | 0.806294 | 8.821179e-50 | -8.615850e-47 |
Msa0513080 | Msa1035220 | 0.800965 | 1.125238e-48 | -8.615850e-47 |
Msa0513560 | Msa1035220 | 0.800380 | 1.481223e-48 | -8.615850e-47 |
Msa0514580 | Msa1035220 | 0.809274 | 2.051749e-50 | -8.615850e-47 |
Msa0520260 | Msa1035220 | 0.803586 | 3.247708e-49 | -8.615850e-47 |
Msa0520870 | Msa1035220 | 0.851757 | 7.209051e-61 | -8.615850e-47 |
Msa0521680 | Msa1035220 | 0.802693 | 4.969790e-49 | -8.615850e-47 |
Msa0524520 | Msa1035220 | 0.821998 | 2.996674e-53 | -8.615850e-47 |
Msa0531960 | Msa1035220 | 0.861501 | 9.813437e-64 | -8.615850e-47 |
Msa0534100 | Msa1035220 | 0.815991 | 6.959809e-52 | -8.615850e-47 |
Msa0550590 | Msa1035220 | 0.821202 | 4.576857e-53 | -8.615850e-47 |
Msa0561560 | Msa1035220 | 0.820079 | 8.288559e-53 | -8.615850e-47 |
Msa0567170 | Msa1035220 | 0.816717 | 4.788021e-52 | -8.615850e-47 |
Msa0571620 | Msa1035220 | 0.842232 | 2.932017e-58 | -8.615850e-47 |
Msa0577280 | Msa1035220 | 0.801904 | 7.223430e-49 | -8.615850e-47 |
Msa0577330 | Msa1035220 | 0.800109 | 1.681303e-48 | -8.615850e-47 |
Msa0580200 | Msa1035220 | 0.824745 | 6.834770e-54 | -8.615850e-47 |
Msa0581840 | Msa1035220 | 0.816139 | 6.450286e-52 | -8.615850e-47 |
Msa0588920 | Msa1035220 | 0.807532 | 4.828155e-50 | -8.615850e-47 |
Msa0590200 | Msa1035220 | 0.832872 | 7.376439e-56 | -8.615850e-47 |
Msa0843050 | Msa1035220 | 0.809035 | 2.308214e-50 | -8.615850e-47 |
Msa0863620 | Msa1035220 | 0.823482 | 1.352382e-53 | -8.615850e-47 |
Msa0867110 | Msa1035220 | 0.810079 | 1.377861e-50 | -8.615850e-47 |
Msa0900760 | Msa1035220 | 0.806958 | 6.387227e-50 | -8.615850e-47 |
Msa0909760 | Msa1035220 | 0.861726 | 8.380062e-64 | -8.615850e-47 |
Msa0931590 | Msa1035220 | 0.819640 | 1.044604e-52 | -8.615850e-47 |
Msa0932960 | Msa1035220 | 0.811053 | 8.483982e-51 | -8.615850e-47 |
Msa0966320 | Msa1035220 | 0.822718 | 2.038729e-53 | -8.615850e-47 |
Msa0966480 | Msa1035220 | 0.816438 | 5.529123e-52 | -8.615850e-47 |
Msa0970770 | Msa1035220 | 0.805046 | 1.612513e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1035220 | MtrunA17_Chr7g0258701 | 98.305 | 118 | 2 | 0 | 23 | 140 | 22 | 139 | 2.25e-80 | 233 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1035220 | AT2G42110.1 | 50.000 | 130 | 55 | 5 | 19 | 140 | 10 | 137 | 3.72e-27 | 98.6 |
Find 35 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTATGTATATTGAACTAT+TGG | 0.294447 | 7_1:+70983133 | Msa1035220:three_prime_UTR |
TAGGATGGATGGACCGTTAT+AGG | 0.307711 | 7_1:-70982068 | None:intergenic |
AAAATGTTAATATGATTTGA+TGG | 0.331087 | 7_1:-70982097 | None:intergenic |
AGTCAGTGCTCCGGCAGCTC+AGG | 0.334794 | 7_1:+70982421 | Msa1035220:CDS |
TAGGAATCAAAATATTAATC+AGG | 0.340958 | 7_1:-70982049 | None:intergenic |
TTTGATCAATGATATTGTTT+AGG | 0.352558 | 7_1:+70983042 | Msa1035220:CDS |
GACTTCCGGCTCACTGTTGC+CGG | 0.373087 | 7_1:-70982402 | None:intergenic |
GGCATTGCTTTCATCTGATC+AGG | 0.388377 | 7_1:-70983107 | None:intergenic |
ACGTAACTCTTTCTTCTCAT+TGG | 0.414695 | 7_1:-70982289 | None:intergenic |
GCTGCCGGAGCACTGACTTC+CGG | 0.414941 | 7_1:-70982416 | None:intergenic |
CAGAAACAAGTCATCACTCT+TGG | 0.430413 | 7_1:+70982455 | Msa1035220:CDS |
TTGGGGTCTCACCTTGTGAA+TGG | 0.442298 | 7_1:-70982481 | None:intergenic |
CAATAGTTCAATATACATAA+AGG | 0.446328 | 7_1:-70983132 | None:intergenic |
TACTGTTACTACTGATGCTA+AGG | 0.475719 | 7_1:+70982206 | Msa1035220:CDS |
ACATGGCGTAGAACTGTAGA+AGG | 0.478353 | 7_1:+70982974 | Msa1035220:CDS |
ACTCAGGAAGTTTGCTGAAG+TGG | 0.504736 | 7_1:+70982263 | Msa1035220:CDS |
AAACGGCACCACTGCCGTTG+TGG | 0.512072 | 7_1:+70982362 | Msa1035220:CDS |
AATCTTCTGATGAGCTACTC+AGG | 0.514440 | 7_1:+70982247 | Msa1035220:CDS |
AGTAGAAGTAGTAGCAGAAG+TGG | 0.515882 | 7_1:-70982187 | None:intergenic |
AGAAACAAGTCATCACTCTT+GGG | 0.516768 | 7_1:+70982456 | Msa1035220:CDS |
TTTGCTTACTCTCTCTGCAA+TGG | 0.518570 | 7_1:+70982140 | Msa1035220:exon |
TATCTCTAACCCTGAGCTGC+CGG | 0.524168 | 7_1:-70982431 | None:intergenic |
CCTCCTTTCCACAACGGCAG+TGG | 0.532545 | 7_1:-70982370 | None:intergenic |
CAATCTGAGAGCTCTTCAAA+CGG | 0.537248 | 7_1:+70982345 | Msa1035220:CDS |
CTCAGGAAGTTTGCTGAAGT+GGG | 0.542614 | 7_1:+70982264 | Msa1035220:CDS |
GCACCACTGCCGTTGTGGAA+AGG | 0.550600 | 7_1:+70982367 | Msa1035220:CDS |
TGAGCCGGAAGTCAGTGCTC+CGG | 0.557573 | 7_1:+70982412 | Msa1035220:CDS |
AGGAATCAAAATATTAATCA+GGG | 0.560507 | 7_1:-70982048 | None:intergenic |
CATTGATCAAACGCTTATGA+CGG | 0.586996 | 7_1:-70983030 | None:intergenic |
GTCAGTGCTCCGGCAGCTCA+GGG | 0.601711 | 7_1:+70982422 | Msa1035220:CDS |
CCACTGCCGTTGTGGAAAGG+AGG | 0.606383 | 7_1:+70982370 | Msa1035220:CDS |
TAGTTCAATATACATAAAGG+TGG | 0.609618 | 7_1:-70983129 | None:intergenic |
AGTTCAATATACATAAAGGT+GGG | 0.633186 | 7_1:-70983128 | None:intergenic |
ACTCTTGGGAACCATTCACA+AGG | 0.711090 | 7_1:+70982470 | Msa1035220:CDS |
AAGCGACCTCCTTTCCACAA+CGG | 0.711834 | 7_1:-70982376 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGCATTAATTTTTTTTTTTT+GGG | - | chr7_1:70982895-70982914 | None:intergenic | 10.0% |
!!! | TGCATTAATTTTTTTTTTTT+GGG | - | chr7_1:70982895-70982914 | None:intergenic | 10.0% |
!!! | TAATATTTTGATTCCTATAA+CGG | + | chr7_1:70982055-70982074 | Msa1035220:five_prime_UTR | 15.0% |
!! | AAAATGTTAATATGATTTGA+TGG | - | chr7_1:70982100-70982119 | None:intergenic | 15.0% |
!!! | CTGCATTAATTTTTTTTTTT+TGG | - | chr7_1:70982896-70982915 | None:intergenic | 15.0% |
!!! | TAATATTTTGATTCCTATAA+CGG | + | chr7_1:70982055-70982074 | Msa1035220:five_prime_UTR | 15.0% |
!! | AAAATGTTAATATGATTTGA+TGG | - | chr7_1:70982100-70982119 | None:intergenic | 15.0% |
!!! | CTGCATTAATTTTTTTTTTT+TGG | - | chr7_1:70982896-70982915 | None:intergenic | 15.0% |
!! | AGGAATCAAAATATTAATCA+GGG | - | chr7_1:70982051-70982070 | None:intergenic | 20.0% |
!! | TAGGAATCAAAATATTAATC+AGG | - | chr7_1:70982052-70982071 | None:intergenic | 20.0% |
!!! | TATGATTTGATGGTTTTAAT+AGG | - | chr7_1:70982090-70982109 | None:intergenic | 20.0% |
!! | TTCGTACACTAATTAATTAA+GGG | - | chr7_1:70982612-70982631 | None:intergenic | 20.0% |
!! | TTTCGTACACTAATTAATTA+AGG | - | chr7_1:70982613-70982632 | None:intergenic | 20.0% |
!! | GTGATTAAGATATATTTAAC+TGG | - | chr7_1:70982660-70982679 | None:intergenic | 20.0% |
!! | ATATATCTTAATCACTTTGA+TGG | + | chr7_1:70982665-70982684 | Msa1035220:intron | 20.0% |
!!! | ACATTCTCCTTTTTTTTTTT+GGG | - | chr7_1:70982733-70982752 | None:intergenic | 20.0% |
!!! | AACATTCTCCTTTTTTTTTT+TGG | - | chr7_1:70982734-70982753 | None:intergenic | 20.0% |
!! | TTTGATCAATGATATTGTTT+AGG | + | chr7_1:70983042-70983061 | Msa1035220:CDS | 20.0% |
!! | CAATAGTTCAATATACATAA+AGG | - | chr7_1:70983135-70983154 | None:intergenic | 20.0% |
!! | CTTTATGTATATTGAACTAT+TGG | + | chr7_1:70983133-70983152 | Msa1035220:three_prime_UTR | 20.0% |
!! | AGGAATCAAAATATTAATCA+GGG | - | chr7_1:70982051-70982070 | None:intergenic | 20.0% |
!! | TAGGAATCAAAATATTAATC+AGG | - | chr7_1:70982052-70982071 | None:intergenic | 20.0% |
!!! | TATGATTTGATGGTTTTAAT+AGG | - | chr7_1:70982090-70982109 | None:intergenic | 20.0% |
!! | TTCGTACACTAATTAATTAA+GGG | - | chr7_1:70982612-70982631 | None:intergenic | 20.0% |
!! | TTTCGTACACTAATTAATTA+AGG | - | chr7_1:70982613-70982632 | None:intergenic | 20.0% |
!! | GTGATTAAGATATATTTAAC+TGG | - | chr7_1:70982660-70982679 | None:intergenic | 20.0% |
!! | ATATATCTTAATCACTTTGA+TGG | + | chr7_1:70982665-70982684 | Msa1035220:intron | 20.0% |
!!! | ACATTCTCCTTTTTTTTTTT+GGG | - | chr7_1:70982733-70982752 | None:intergenic | 20.0% |
!!! | AACATTCTCCTTTTTTTTTT+TGG | - | chr7_1:70982734-70982753 | None:intergenic | 20.0% |
!! | TTTGATCAATGATATTGTTT+AGG | + | chr7_1:70983042-70983061 | Msa1035220:CDS | 20.0% |
!! | CAATAGTTCAATATACATAA+AGG | - | chr7_1:70983135-70983154 | None:intergenic | 20.0% |
!! | CTTTATGTATATTGAACTAT+TGG | + | chr7_1:70983133-70983152 | Msa1035220:three_prime_UTR | 20.0% |
!!! | ATTTGATGGTTTTAATAGGA+TGG | - | chr7_1:70982086-70982105 | None:intergenic | 25.0% |
!!! | ACCAAGAAAAAGTGTTAATT+GGG | - | chr7_1:70982502-70982521 | None:intergenic | 25.0% |
! | GTTACCTTGTTAATTAGAAT+TGG | + | chr7_1:70982554-70982573 | Msa1035220:intron | 25.0% |
! | TAGCTTACCCAAAAAAAAAA+AGG | + | chr7_1:70982723-70982742 | Msa1035220:intron | 25.0% |
! | ATTGGTTAAACAGTTAAAAG+AGG | + | chr7_1:70982772-70982791 | Msa1035220:intron | 25.0% |
!!! | TTTTTTTTTGGGTCTTGTTA+AGG | - | chr7_1:70982884-70982903 | None:intergenic | 25.0% |
! | AGTTCAATATACATAAAGGT+GGG | - | chr7_1:70983131-70983150 | None:intergenic | 25.0% |
! | TAGTTCAATATACATAAAGG+TGG | - | chr7_1:70983132-70983151 | None:intergenic | 25.0% |
!!! | ATTTGATGGTTTTAATAGGA+TGG | - | chr7_1:70982086-70982105 | None:intergenic | 25.0% |
!!! | ACCAAGAAAAAGTGTTAATT+GGG | - | chr7_1:70982502-70982521 | None:intergenic | 25.0% |
! | GTTACCTTGTTAATTAGAAT+TGG | + | chr7_1:70982554-70982573 | Msa1035220:intron | 25.0% |
! | TAGCTTACCCAAAAAAAAAA+AGG | + | chr7_1:70982723-70982742 | Msa1035220:intron | 25.0% |
! | ATTGGTTAAACAGTTAAAAG+AGG | + | chr7_1:70982772-70982791 | Msa1035220:intron | 25.0% |
!!! | TTTTTTTTTGGGTCTTGTTA+AGG | - | chr7_1:70982884-70982903 | None:intergenic | 25.0% |
! | AGTTCAATATACATAAAGGT+GGG | - | chr7_1:70983131-70983150 | None:intergenic | 25.0% |
! | TAGTTCAATATACATAAAGG+TGG | - | chr7_1:70983132-70983151 | None:intergenic | 25.0% |
! | GATTTTCCTTCATCTTTTTG+CGG | - | chr7_1:70982326-70982345 | None:intergenic | 30.0% |
!! | CCAAGAAAAAGTGTTAATTG+GGG | - | chr7_1:70982501-70982520 | None:intergenic | 30.0% |
!! | GACCAAGAAAAAGTGTTAAT+TGG | - | chr7_1:70982503-70982522 | None:intergenic | 30.0% |
TGTGCCAATTCTAATTAACA+AGG | - | chr7_1:70982561-70982580 | None:intergenic | 30.0% | |
CAAAAGTAGAAAAGTTGTCT+TGG | - | chr7_1:70982857-70982876 | None:intergenic | 30.0% | |
! | CTTTTCTATGAAAACTCTAG+AGG | - | chr7_1:70983002-70983021 | None:intergenic | 30.0% |
! | GATTTTCCTTCATCTTTTTG+CGG | - | chr7_1:70982326-70982345 | None:intergenic | 30.0% |
!! | CCAAGAAAAAGTGTTAATTG+GGG | - | chr7_1:70982501-70982520 | None:intergenic | 30.0% |
!! | GACCAAGAAAAAGTGTTAAT+TGG | - | chr7_1:70982503-70982522 | None:intergenic | 30.0% |
TGTGCCAATTCTAATTAACA+AGG | - | chr7_1:70982561-70982580 | None:intergenic | 30.0% | |
CAAAAGTAGAAAAGTTGTCT+TGG | - | chr7_1:70982857-70982876 | None:intergenic | 30.0% | |
! | CTTTTCTATGAAAACTCTAG+AGG | - | chr7_1:70983002-70983021 | None:intergenic | 30.0% |
!!! | GATGGTTTTAATAGGATGGA+TGG | - | chr7_1:70982082-70982101 | None:intergenic | 35.0% |
TACTGTTACTACTGATGCTA+AGG | + | chr7_1:70982206-70982225 | Msa1035220:CDS | 35.0% | |
ACGTAACTCTTTCTTCTCAT+TGG | - | chr7_1:70982292-70982311 | None:intergenic | 35.0% | |
AGAAACAAGTCATCACTCTT+GGG | + | chr7_1:70982456-70982475 | Msa1035220:CDS | 35.0% | |
!!! | CCCCAATTAACACTTTTTCT+TGG | + | chr7_1:70982498-70982517 | Msa1035220:intron | 35.0% |
ACTATACTTTGTTGCAGACA+TGG | + | chr7_1:70982957-70982976 | Msa1035220:intron | 35.0% | |
CATTGATCAAACGCTTATGA+CGG | - | chr7_1:70983033-70983052 | None:intergenic | 35.0% | |
!! | TCTTTTGACTCTGTTTGCTA+TGG | + | chr7_1:70983224-70983243 | Msa1035220:three_prime_UTR | 35.0% |
!!! | GATGGTTTTAATAGGATGGA+TGG | - | chr7_1:70982082-70982101 | None:intergenic | 35.0% |
TACTGTTACTACTGATGCTA+AGG | + | chr7_1:70982206-70982225 | Msa1035220:CDS | 35.0% | |
ACGTAACTCTTTCTTCTCAT+TGG | - | chr7_1:70982292-70982311 | None:intergenic | 35.0% | |
AGAAACAAGTCATCACTCTT+GGG | + | chr7_1:70982456-70982475 | Msa1035220:CDS | 35.0% | |
!!! | CCCCAATTAACACTTTTTCT+TGG | + | chr7_1:70982498-70982517 | Msa1035220:intron | 35.0% |
ACTATACTTTGTTGCAGACA+TGG | + | chr7_1:70982957-70982976 | Msa1035220:intron | 35.0% | |
CATTGATCAAACGCTTATGA+CGG | - | chr7_1:70983033-70983052 | None:intergenic | 35.0% | |
!! | TCTTTTGACTCTGTTTGCTA+TGG | + | chr7_1:70983224-70983243 | Msa1035220:three_prime_UTR | 35.0% |
TTTGCTTACTCTCTCTGCAA+TGG | + | chr7_1:70982140-70982159 | Msa1035220:exon | 40.0% | |
AGTAGAAGTAGTAGCAGAAG+TGG | - | chr7_1:70982190-70982209 | None:intergenic | 40.0% | |
AATCTTCTGATGAGCTACTC+AGG | + | chr7_1:70982247-70982266 | Msa1035220:CDS | 40.0% | |
CAATCTGAGAGCTCTTCAAA+CGG | + | chr7_1:70982345-70982364 | Msa1035220:CDS | 40.0% | |
CAGAAACAAGTCATCACTCT+TGG | + | chr7_1:70982455-70982474 | Msa1035220:CDS | 40.0% | |
TAACTGTTTAACCAATGCCC+CGG | - | chr7_1:70982768-70982787 | None:intergenic | 40.0% | |
TTTGCTTACTCTCTCTGCAA+TGG | + | chr7_1:70982140-70982159 | Msa1035220:exon | 40.0% | |
AGTAGAAGTAGTAGCAGAAG+TGG | - | chr7_1:70982190-70982209 | None:intergenic | 40.0% | |
AATCTTCTGATGAGCTACTC+AGG | + | chr7_1:70982247-70982266 | Msa1035220:CDS | 40.0% | |
CAATCTGAGAGCTCTTCAAA+CGG | + | chr7_1:70982345-70982364 | Msa1035220:CDS | 40.0% | |
CAGAAACAAGTCATCACTCT+TGG | + | chr7_1:70982455-70982474 | Msa1035220:CDS | 40.0% | |
TAACTGTTTAACCAATGCCC+CGG | - | chr7_1:70982768-70982787 | None:intergenic | 40.0% | |
TAGGATGGATGGACCGTTAT+AGG | - | chr7_1:70982071-70982090 | None:intergenic | 45.0% | |
!! | ACTCAGGAAGTTTGCTGAAG+TGG | + | chr7_1:70982263-70982282 | Msa1035220:CDS | 45.0% |
!! | CTCAGGAAGTTTGCTGAAGT+GGG | + | chr7_1:70982264-70982283 | Msa1035220:CDS | 45.0% |
CAAACGCCGCAAAAAGATGA+AGG | + | chr7_1:70982317-70982336 | Msa1035220:CDS | 45.0% | |
ACTCTTGGGAACCATTCACA+AGG | + | chr7_1:70982470-70982489 | Msa1035220:CDS | 45.0% | |
AACTGTTTAACCAATGCCCC+GGG | - | chr7_1:70982767-70982786 | None:intergenic | 45.0% | |
ACATGGCGTAGAACTGTAGA+AGG | + | chr7_1:70982974-70982993 | Msa1035220:CDS | 45.0% | |
GGCATTGCTTTCATCTGATC+AGG | - | chr7_1:70983110-70983129 | None:intergenic | 45.0% | |
TAGGATGGATGGACCGTTAT+AGG | - | chr7_1:70982071-70982090 | None:intergenic | 45.0% | |
!! | ACTCAGGAAGTTTGCTGAAG+TGG | + | chr7_1:70982263-70982282 | Msa1035220:CDS | 45.0% |
!! | CTCAGGAAGTTTGCTGAAGT+GGG | + | chr7_1:70982264-70982283 | Msa1035220:CDS | 45.0% |
CAAACGCCGCAAAAAGATGA+AGG | + | chr7_1:70982317-70982336 | Msa1035220:CDS | 45.0% | |
ACTCTTGGGAACCATTCACA+AGG | + | chr7_1:70982470-70982489 | Msa1035220:CDS | 45.0% | |
AACTGTTTAACCAATGCCCC+GGG | - | chr7_1:70982767-70982786 | None:intergenic | 45.0% | |
ACATGGCGTAGAACTGTAGA+AGG | + | chr7_1:70982974-70982993 | Msa1035220:CDS | 45.0% | |
GGCATTGCTTTCATCTGATC+AGG | - | chr7_1:70983110-70983129 | None:intergenic | 45.0% | |
AAGCGACCTCCTTTCCACAA+CGG | - | chr7_1:70982379-70982398 | None:intergenic | 50.0% | |
!!! | GGAAAGGAGGTCGCTTTTAC+CGG | + | chr7_1:70982383-70982402 | Msa1035220:CDS | 50.0% |
! | TTTTACCGGCAACAGTGAGC+CGG | + | chr7_1:70982397-70982416 | Msa1035220:CDS | 50.0% |
TATCTCTAACCCTGAGCTGC+CGG | - | chr7_1:70982434-70982453 | None:intergenic | 50.0% | |
TTGGGGTCTCACCTTGTGAA+TGG | - | chr7_1:70982484-70982503 | None:intergenic | 50.0% | |
AGAATGTTAACCAGTGCCCC+CGG | + | chr7_1:70982746-70982765 | Msa1035220:intron | 50.0% | |
ACTGTTTAACCAATGCCCCG+GGG | - | chr7_1:70982766-70982785 | None:intergenic | 50.0% | |
AAGCGACCTCCTTTCCACAA+CGG | - | chr7_1:70982379-70982398 | None:intergenic | 50.0% | |
!!! | GGAAAGGAGGTCGCTTTTAC+CGG | + | chr7_1:70982383-70982402 | Msa1035220:CDS | 50.0% |
! | TTTTACCGGCAACAGTGAGC+CGG | + | chr7_1:70982397-70982416 | Msa1035220:CDS | 50.0% |
TATCTCTAACCCTGAGCTGC+CGG | - | chr7_1:70982434-70982453 | None:intergenic | 50.0% | |
TTGGGGTCTCACCTTGTGAA+TGG | - | chr7_1:70982484-70982503 | None:intergenic | 50.0% | |
AGAATGTTAACCAGTGCCCC+CGG | + | chr7_1:70982746-70982765 | Msa1035220:intron | 50.0% | |
ACTGTTTAACCAATGCCCCG+GGG | - | chr7_1:70982766-70982785 | None:intergenic | 50.0% | |
GAATGTTAACCAGTGCCCCC+GGG | + | chr7_1:70982747-70982766 | Msa1035220:intron | 55.0% | |
AATGTTAACCAGTGCCCCCG+GGG | + | chr7_1:70982748-70982767 | Msa1035220:intron | 55.0% | |
CTGTTTAACCAATGCCCCGG+GGG | - | chr7_1:70982765-70982784 | None:intergenic | 55.0% | |
GAATGTTAACCAGTGCCCCC+GGG | + | chr7_1:70982747-70982766 | Msa1035220:intron | 55.0% | |
AATGTTAACCAGTGCCCCCG+GGG | + | chr7_1:70982748-70982767 | Msa1035220:intron | 55.0% | |
CTGTTTAACCAATGCCCCGG+GGG | - | chr7_1:70982765-70982784 | None:intergenic | 55.0% | |
AAACGGCACCACTGCCGTTG+TGG | + | chr7_1:70982362-70982381 | Msa1035220:CDS | 60.0% | |
GCACCACTGCCGTTGTGGAA+AGG | + | chr7_1:70982367-70982386 | Msa1035220:CDS | 60.0% | |
CCTCCTTTCCACAACGGCAG+TGG | - | chr7_1:70982373-70982392 | None:intergenic | 60.0% | |
CCACTGCCGTTGTGGAAAGG+AGG | + | chr7_1:70982370-70982389 | Msa1035220:CDS | 60.0% | |
GACTTCCGGCTCACTGTTGC+CGG | - | chr7_1:70982405-70982424 | None:intergenic | 60.0% | |
TGAGCCGGAAGTCAGTGCTC+CGG | + | chr7_1:70982412-70982431 | Msa1035220:CDS | 60.0% | |
AAACGGCACCACTGCCGTTG+TGG | + | chr7_1:70982362-70982381 | Msa1035220:CDS | 60.0% | |
GCACCACTGCCGTTGTGGAA+AGG | + | chr7_1:70982367-70982386 | Msa1035220:CDS | 60.0% | |
CCTCCTTTCCACAACGGCAG+TGG | - | chr7_1:70982373-70982392 | None:intergenic | 60.0% | |
CCACTGCCGTTGTGGAAAGG+AGG | + | chr7_1:70982370-70982389 | Msa1035220:CDS | 60.0% | |
GACTTCCGGCTCACTGTTGC+CGG | - | chr7_1:70982405-70982424 | None:intergenic | 60.0% | |
TGAGCCGGAAGTCAGTGCTC+CGG | + | chr7_1:70982412-70982431 | Msa1035220:CDS | 60.0% | |
!! | GCTGCCGGAGCACTGACTTC+CGG | - | chr7_1:70982419-70982438 | None:intergenic | 65.0% |
AGTCAGTGCTCCGGCAGCTC+AGG | + | chr7_1:70982421-70982440 | Msa1035220:CDS | 65.0% | |
GTCAGTGCTCCGGCAGCTCA+GGG | + | chr7_1:70982422-70982441 | Msa1035220:CDS | 65.0% | |
!! | GCTGCCGGAGCACTGACTTC+CGG | - | chr7_1:70982419-70982438 | None:intergenic | 65.0% |
AGTCAGTGCTCCGGCAGCTC+AGG | + | chr7_1:70982421-70982440 | Msa1035220:CDS | 65.0% | |
GTCAGTGCTCCGGCAGCTCA+GGG | + | chr7_1:70982422-70982441 | Msa1035220:CDS | 65.0% | |
AACCAGTGCCCCCGGGGCAT+TGG | + | chr7_1:70982754-70982773 | Msa1035220:intron | 70.0% | |
! | AACCAATGCCCCGGGGGCAC+TGG | - | chr7_1:70982759-70982778 | None:intergenic | 70.0% |
AACCAGTGCCCCCGGGGCAT+TGG | + | chr7_1:70982754-70982773 | Msa1035220:intron | 70.0% | |
! | AACCAATGCCCCGGGGGCAC+TGG | - | chr7_1:70982759-70982778 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 70982028 | 70983269 | 70982028 | ID=Msa1035220;Name=Msa1035220 |
chr7_1 | mRNA | 70982028 | 70983269 | 70982028 | ID=Msa1035220-mRNA-1;Parent=Msa1035220;Name=Msa1035220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=131|1|1|1|1|1|2|206|140 |
chr7_1 | exon | 70982028 | 70982491 | 70982028 | ID=Msa1035220-mRNA-1:exon:17057;Parent=Msa1035220-mRNA-1 |
chr7_1 | exon | 70982974 | 70983269 | 70982974 | ID=Msa1035220-mRNA-1:exon:17058;Parent=Msa1035220-mRNA-1 |
chr7_1 | five_prime_UTR | 70982028 | 70982158 | 70982028 | ID=Msa1035220-mRNA-1:five_prime_utr;Parent=Msa1035220-mRNA-1 |
chr7_1 | CDS | 70982159 | 70982491 | 70982159 | ID=Msa1035220-mRNA-1:cds;Parent=Msa1035220-mRNA-1 |
chr7_1 | CDS | 70982974 | 70983063 | 70982974 | ID=Msa1035220-mRNA-1:cds;Parent=Msa1035220-mRNA-1 |
chr7_1 | three_prime_UTR | 70983064 | 70983269 | 70983064 | ID=Msa1035220-mRNA-1:three_prime_utr;Parent=Msa1035220-mRNA-1 |
Gene Sequence |
Protein sequence |