AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1367690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367690 MtrunA17_Chr5g0448751 84.337 747 37 10 12 713 1 712 0.0 1069
Msa1367690 MtrunA17_Chr3g0079741 38.402 651 303 16 105 699 124 732 4.54e-114 361
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367690 AT4G35440.1 55.491 692 222 12 60 708 52 700 0.0 646
Msa1367690 AT4G35440.2 55.394 686 220 12 60 702 52 694 0.0 640
Msa1367690 AT1G55620.2 37.717 692 334 13 63 699 104 753 1.07e-118 374
Msa1367690 AT1G55620.1 38.345 592 281 11 153 699 5 557 6.31e-97 311

Find 219 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAAATTATAATACATTT+TGG 0.076083 tig0018533:-91358 None:intergenic
CAATTCCCGCCCTTTCTTAA+AGG 0.140965 tig0018533:+85481 Msa1367690:CDS
TATGCCCCATCTCTCTTTAT+TGG 0.172919 tig0018533:+86297 Msa1367690:CDS
TAAAACAATGTGAAAATATT+TGG 0.195347 tig0018533:-91086 None:intergenic
GTAATACTTGTTCCCGCTTT+TGG 0.215841 tig0018533:+85419 Msa1367690:CDS
AAAAGCTTCTTTCCCTATAC+TGG 0.219006 tig0018533:+86083 Msa1367690:CDS
GATCTACAAGAAGATATTTC+TGG 0.225097 tig0018533:-88003 None:intergenic
TAATTATAGAAGGAAATTTA+AGG 0.225663 tig0018533:+91174 Msa1367690:three_prime_UTR
AAACCCCAATAGAGGATTTC+AGG 0.241095 tig0018533:-86141 None:intergenic
TTCTGAATGGATTCGTAATT+CGG 0.248961 tig0018533:+85141 Msa1367690:CDS
TGCTTGGTTGGTCTCTTAAC+AGG 0.250823 tig0018533:+85178 Msa1367690:CDS
GAGCAGTAGGCTTGTCTTCA+TGG 0.271244 tig0018533:+87899 Msa1367690:CDS
GGTTTCAATGCTGCCGTTGC+TGG 0.284939 tig0018533:+85671 Msa1367690:CDS
GCTTCTGTCATTTCTGAGAT+TGG 0.287776 tig0018533:+85797 Msa1367690:CDS
CGTCACAAATCTTGTCTTCA+TGG 0.289773 tig0018533:-88166 None:intergenic
CTCTTTATTGGTGGTGCAAC+TGG 0.292571 tig0018533:+86309 Msa1367690:CDS
GGTTAAACTTGACGTGTTAA+AGG 0.299752 tig0018533:-91023 None:intergenic
GTTGCATCACCACAAGCTTA+TGG 0.300491 tig0018533:+86405 Msa1367690:CDS
CATTCGAGCGTTTGGAAAAT+CGG 0.306344 tig0018533:+88305 Msa1367690:CDS
ATATCCTGAAATCCTCTATT+GGG 0.308167 tig0018533:+86137 Msa1367690:CDS
TATATCCTGAAATCCTCTAT+TGG 0.313244 tig0018533:+86136 Msa1367690:CDS
CTTGGAGACATTCGAGCGTT+TGG 0.318252 tig0018533:+88297 Msa1367690:CDS
AGCTCGGAGGGGAAGGAGTT+TGG 0.326802 tig0018533:-85621 None:intergenic
ATGTACAGTTACTCCTGATA+TGG 0.337075 tig0018533:+88891 Msa1367690:CDS
CTTAGCTGATGTTCCAAGTT+AGG 0.341603 tig0018533:+90955 Msa1367690:exon
TTTGTTGTGGGATGGGATTC+CGG 0.349408 tig0018533:+85343 Msa1367690:CDS
GCTGCTACACTTTGATTTGT+TGG 0.351267 tig0018533:+87611 Msa1367690:CDS
CTCCTTCCCCTCCGAGCTGC+TGG 0.352742 tig0018533:+85626 Msa1367690:CDS
TCATAGATATTCTTCACAAC+TGG 0.355678 tig0018533:-88964 None:intergenic
CACTTGAGTGACTTTGAGTT+TGG 0.356054 tig0018533:-91219 None:intergenic
TTTAGGCACTGGTAATTCCT+TGG 0.356178 tig0018533:+85523 Msa1367690:CDS
ACTTCTCTCTGTCGTGCTTC+CGG 0.359138 tig0018533:+86258 Msa1367690:CDS
CTCCCGCTGTATTTATTGTT+GGG 0.360626 tig0018533:+85967 Msa1367690:CDS
GGATTATCTTTAATTATAGA+AGG 0.363447 tig0018533:+91164 Msa1367690:three_prime_UTR
GAAAGGGCGGGAATTGGAAT+TGG 0.369550 tig0018533:-85474 None:intergenic
GATACTGATGATACTTTGAT+TGG 0.372612 tig0018533:+88264 Msa1367690:CDS
ATTGCAGCTTCTATTACTTT+AGG 0.372973 tig0018533:+85506 Msa1367690:CDS
CAGATAAACCTCCCAGTATA+GGG 0.373492 tig0018533:-86095 None:intergenic
TATATGATGTAGACCAAGAT+AGG 0.374540 tig0018533:-86017 None:intergenic
ACAACCACCACAGAATTAAA+TGG 0.376850 tig0018533:-91049 None:intergenic
TCGTTTCATTGACCCTATCT+TGG 0.384744 tig0018533:+86004 Msa1367690:CDS
TCTGAATGGATTCGTAATTC+GGG 0.387923 tig0018533:+85142 Msa1367690:CDS
GATGGAATAATGGGTGGCTT+AGG 0.388765 tig0018533:+84887 Msa1367690:CDS
TTAGGCACTGGTAATTCCTT+GGG 0.389974 tig0018533:+85524 Msa1367690:CDS
AACTTATCCAATTGGCCTAC+TGG 0.394323 tig0018533:+88990 Msa1367690:CDS
GGTGCAACTGGTATGGCTTA+TGG 0.397493 tig0018533:+86321 Msa1367690:CDS
GCATGATAAAGTTCCATATC+AGG 0.402519 tig0018533:-88904 None:intergenic
ACAGATAAACCTCCCAGTAT+AGG 0.404053 tig0018533:-86096 None:intergenic
TCTGCTGCCGGCCTCTCTGC+TGG 0.404243 tig0018533:+85650 Msa1367690:CDS
CTTTAAGAAAGGGCGGGAAT+TGG 0.404300 tig0018533:-85480 None:intergenic
AACCATGAGGCACCTCTATC+CGG 0.405987 tig0018533:-85362 None:intergenic
GCTCCCGCTGTATTTATTGT+TGG 0.406865 tig0018533:+85966 Msa1367690:CDS
TGCAATAACAGTAACACGTT+CGG 0.407092 tig0018533:+84982 Msa1367690:CDS
TTTGGAAAATCGGCAAAGTC+TGG 0.407852 tig0018533:+88315 Msa1367690:CDS
CTGCTACACTTTGATTTGTT+GGG 0.415556 tig0018533:+87612 Msa1367690:CDS
AACATACTCCCACTAGTAAT+AGG 0.418105 tig0018533:-91310 None:intergenic
TTGCATCACCACAAGCTTAT+GGG 0.419579 tig0018533:+86406 Msa1367690:CDS
GCCCCATCTCTCTTTATTGG+TGG 0.420047 tig0018533:+86300 Msa1367690:CDS
GCCAACTTCACAACTACTAA+TGG 0.423560 tig0018533:+85040 Msa1367690:CDS
AGTATAGGGAAAGAAGCTTT+TGG 0.424009 tig0018533:-86081 None:intergenic
ATAATATCTTCATGCTTGGT+TGG 0.426952 tig0018533:+85166 Msa1367690:CDS
TTATTGTTGGGTATCTTATG+TGG 0.429316 tig0018533:+85979 Msa1367690:CDS
CAGCGTATGGTTGTCTATGC+TGG 0.432242 tig0018533:+87585 Msa1367690:intron
ACAGTATCAGTTTAACATAC+AGG 0.433565 tig0018533:+89019 Msa1367690:CDS
GGGAATAATATCTTCATGCT+TGG 0.434628 tig0018533:+85162 Msa1367690:CDS
TATGAAAGAACTTATCCAAT+TGG 0.435410 tig0018533:+88982 Msa1367690:CDS
ATCCAGCAGCTCGGAGGGGA+AGG 0.438621 tig0018533:-85628 None:intergenic
TTCGTGATTTGTTGTGGGAT+GGG 0.439926 tig0018533:+85336 Msa1367690:CDS
TTTGCTGCTGAGTATTCTTA+CGG 0.441301 tig0018533:-91111 None:intergenic
TTCCTGCCCTCCTCCTAACT+TGG 0.442012 tig0018533:-90968 None:intergenic
GCAATAACAGTAACACGTTC+GGG 0.445751 tig0018533:+84983 Msa1367690:CDS
TGTAAGGAGAACATTAGTTT+CGG 0.452473 tig0018533:+88140 Msa1367690:CDS
TGTTGTTGAATGCAGTGCTT+TGG 0.452645 tig0018533:+90918 Msa1367690:intron
TGTTTGAGGAAGAAGAAGAA+AGG 0.453309 tig0018533:-85009 None:intergenic
TATTGGTGGTGCAACTGGTA+TGG 0.455094 tig0018533:+86314 Msa1367690:CDS
GACAAAGAGAGGTGATGAAA+GGG 0.455593 tig0018533:+87936 Msa1367690:CDS
GGAGAACGAAAGTCGTAGTC+TGG 0.455808 tig0018533:-85848 None:intergenic
GTCATTTCTGAGATTGGCCT+CGG 0.456281 tig0018533:+85803 Msa1367690:CDS
TTGTTATAGTGGAATGGCGG+GGG 0.457439 tig0018533:+84858 Msa1367690:intron
CAGTGGAAGTAGTATTGGTA+AGG 0.459156 tig0018533:-85754 None:intergenic
TACGACTTTCGTTCTCCTGC+TGG 0.462599 tig0018533:+85854 Msa1367690:CDS
ATAATAGCCTCCTACTAATC+CGG 0.472882 tig0018533:-86277 None:intergenic
AGCAGATCCAGCAGCTCGGA+GGG 0.474259 tig0018533:-85633 None:intergenic
ATGAAACAATGAATTATGTA+AGG 0.474357 tig0018533:+88124 Msa1367690:CDS
TCGGGGTCCAGTAGGCCAAT+TGG 0.474571 tig0018533:-88997 None:intergenic
GGGGAAGAAGATGGAATAAT+GGG 0.474940 tig0018533:+84878 Msa1367690:CDS
AATAACAGTGGAAGTAGTAT+TGG 0.476615 tig0018533:-85759 None:intergenic
AGAGAAGGAGAAGTTGAGGA+AGG 0.476894 tig0018533:+85100 Msa1367690:CDS
CAAGAAGATATTTCTGGAAA+CGG 0.477909 tig0018533:-87997 None:intergenic
TTGGAAATTCCATTGCCAAA+TGG 0.479995 tig0018533:+85570 Msa1367690:CDS
TTCCAAGTTAGGAGGAGGGC+AGG 0.482390 tig0018533:+90966 Msa1367690:three_prime_UTR
GATAATAGAAATTTATCAAA+CGG 0.485290 tig0018533:-90998 None:intergenic
AACCATGCCATTTAATTCTG+TGG 0.485418 tig0018533:+91042 Msa1367690:three_prime_UTR
CTATTCAAGAAACATGGAAA+AGG 0.487861 tig0018533:+85396 Msa1367690:CDS
TGGTAATTCCTTGGGTCCTG+AGG 0.487982 tig0018533:+85532 Msa1367690:CDS
ATGAAATTCGTGATTTGTTG+TGG 0.489249 tig0018533:+85330 Msa1367690:CDS
TATGTTAAACTGATACTGTC+GGG 0.491201 tig0018533:-89015 None:intergenic
TGTTGTTATAGTGGAATGGC+GGG 0.491886 tig0018533:+84856 Msa1367690:intron
ATGTCGACGCTGGGACCCTC+AGG 0.492267 tig0018533:-85548 None:intergenic
TCACACTCGCACTCAAAAGA+TGG 0.492706 tig0018533:-91253 None:intergenic
AGGAGTGGAAGCAATCCATT+TGG 0.495533 tig0018533:-85585 None:intergenic
AACAAGAAGACCTCCAAAAG+CGG 0.500440 tig0018533:-85432 None:intergenic
GCTTCTATTACTTTAGGCAC+TGG 0.501302 tig0018533:+85512 Msa1367690:CDS
CGAGCTGCTGGATCTGCTGC+CGG 0.501727 tig0018533:+85638 Msa1367690:CDS
CAGCCATTCCAACCTGCAAA+AGG 0.502309 tig0018533:-87783 None:intergenic
TGAAATTCGTGATTTGTTGT+GGG 0.502918 tig0018533:+85331 Msa1367690:CDS
CGCACTCAAAAGATGGAACA+TGG 0.503718 tig0018533:-91246 None:intergenic
CATTCTCAAAACCCCAATAG+AGG 0.505904 tig0018533:-86149 None:intergenic
GGAATTTCCAATGTCGACGC+TGG 0.506064 tig0018533:-85558 None:intergenic
GGAGTATGTTGCAATGCAAT+GGG 0.506248 tig0018533:+91323 Msa1367690:three_prime_UTR
AGATCAATTGAGTTATCTAC+TGG 0.506435 tig0018533:+88021 Msa1367690:CDS
TGTGATTAACCTCTCTCTGT+TGG 0.506709 tig0018533:+86380 Msa1367690:CDS
GCTGCAATAGCCTTTAAGAA+AGG 0.508201 tig0018533:-85491 None:intergenic
TTGTTGTTATAGTGGAATGG+CGG 0.509331 tig0018533:+84855 Msa1367690:intron
ACCATTAGTAGTTGTGAAGT+TGG 0.509522 tig0018533:-85041 None:intergenic
GACAATCTTCACAAGGCCAC+TGG 0.512827 tig0018533:+86054 Msa1367690:CDS
TTAGGATGTGCGGTTGGAGT+CGG 0.514567 tig0018533:+84905 Msa1367690:CDS
ATTGAAACCAGCAGAGAGGC+CGG 0.514866 tig0018533:-85657 None:intergenic
CACCACCAATAAAGAGAGAT+GGG 0.516008 tig0018533:-86302 None:intergenic
TCGGAGGGGAAGGAGTTTGG+CGG 0.517789 tig0018533:-85618 None:intergenic
CTATCTTTGCTATTGTGAAG+CGG 0.518762 tig0018533:-85079 None:intergenic
TATTCAAGAAACATGGAAAA+GGG 0.520527 tig0018533:+85397 Msa1367690:CDS
CTGCAATAGCCTTTAAGAAA+GGG 0.524525 tig0018533:-85490 None:intergenic
TTGAATTGACACAGGACTAT+CGG 0.531346 tig0018533:+87857 Msa1367690:CDS
GGTAATTCCTTGGGTCCTGA+GGG 0.533941 tig0018533:+85533 Msa1367690:CDS
ACAAGAAGACCTCCAAAAGC+GGG 0.535676 tig0018533:-85431 None:intergenic
AGATAGAGAAGGAGAAGTTG+AGG 0.535908 tig0018533:+85096 Msa1367690:CDS
TAGTCTGGAACTTGAAAGGC+AGG 0.536027 tig0018533:-85833 None:intergenic
ATTCGTGATTTGTTGTGGGA+TGG 0.536955 tig0018533:+85335 Msa1367690:CDS
GAGGGTCCCAGCGTCGACAT+TGG 0.538932 tig0018533:+85551 Msa1367690:CDS
TTGATTGGTTTATTGACACT+TGG 0.544041 tig0018533:+88279 Msa1367690:CDS
TTACCACTACTTGGAGCAGT+AGG 0.544067 tig0018533:+87886 Msa1367690:CDS
AGCGAAGAAACAACCAGCAA+CGG 0.545696 tig0018533:-85684 None:intergenic
AGACAAAGAGAGGTGATGAA+AGG 0.546343 tig0018533:+87935 Msa1367690:CDS
AGTTTGGCGGAAGTGAAAAG+AGG 0.546347 tig0018533:-85605 None:intergenic
ATACTGGGAGGTTTATCTGT+AGG 0.547076 tig0018533:+86099 Msa1367690:CDS
AGAAGCAGAACTGCAGTAAG+TGG 0.547744 tig0018533:-87832 None:intergenic
GAACTGCAGTAAGTGGTACT+TGG 0.552159 tig0018533:-87825 None:intergenic
TGATGTTCCAAGTTAGGAGG+AGG 0.552417 tig0018533:+90961 Msa1367690:exon
AAAGCTTCTTTCCCTATACT+GGG 0.555375 tig0018533:+86084 Msa1367690:CDS
CATGAAGACAAGATTTGTGA+CGG 0.555715 tig0018533:+88167 Msa1367690:CDS
TTGTTGTTGTTATAGTGGAA+TGG 0.555761 tig0018533:+84852 Msa1367690:intron
CGGCAGCAGATCCAGCAGCT+CGG 0.555894 tig0018533:-85637 None:intergenic
GTATGTTAAACTGATACTGT+CGG 0.556759 tig0018533:-89016 None:intergenic
GCACCACCAATAAAGAGAGA+TGG 0.559910 tig0018533:-86303 None:intergenic
AAGTTAGGAGGAGGGCAGGA+AGG 0.567793 tig0018533:+90970 Msa1367690:three_prime_UTR
AGCTGATGTTCCAAGTTAGG+AGG 0.570657 tig0018533:+90958 Msa1367690:exon
AGATCTATTACTTTAGTAAG+CGG 0.571523 tig0018533:-88204 None:intergenic
GCTGGGACCCTCAGGACCCA+AGG 0.573710 tig0018533:-85540 None:intergenic
GTTGGCGTAATTCTTGTTTG+AGG 0.573848 tig0018533:-85023 None:intergenic
TACCCAACAATAAATACAGC+GGG 0.573907 tig0018533:-85969 None:intergenic
GAAAAGAAGCTGGCGTGGCA+CGG 0.574919 tig0018533:+87743 Msa1367690:CDS
GGGAGTATGTTGCAATGCAA+TGG 0.575780 tig0018533:+91322 Msa1367690:three_prime_UTR
CAAATGATCATGAAGGAACA+TGG 0.575801 tig0018533:+88928 Msa1367690:CDS
AAATGTTCAGGAAAAGAAGC+TGG 0.576187 tig0018533:+87733 Msa1367690:intron
GGGAATTGGAATTGGAAAGA+AGG 0.576410 tig0018533:-85466 None:intergenic
GAATTTCCAATGTCGACGCT+GGG 0.578311 tig0018533:-85557 None:intergenic
GTCGTAGTCTGGAACTTGAA+AGG 0.578609 tig0018533:-85837 None:intergenic
CAGGATATAGCAATGCTATG+AGG 0.579477 tig0018533:-86122 None:intergenic
GTTGTTATAGTGGAATGGCG+GGG 0.579854 tig0018533:+84857 Msa1367690:intron
TCATGCTCAAATGATCATGA+AGG 0.580187 tig0018533:+88921 Msa1367690:CDS
CACCACAGAATTAAATGGCA+TGG 0.581225 tig0018533:-91044 None:intergenic
AGTGGAAGTAGTATTGGTAA+GGG 0.581373 tig0018533:-85753 None:intergenic
TGGGATGGGATTCCGGATAG+AGG 0.587719 tig0018533:+85350 Msa1367690:CDS
AATAGCCTTTAAGAAAGGGC+GGG 0.587840 tig0018533:-85486 None:intergenic
ATCACCACAAGCTTATGGGC+TGG 0.588084 tig0018533:+86410 Msa1367690:CDS
TGTTATAGTGGAATGGCGGG+GGG 0.589473 tig0018533:+84859 Msa1367690:intron
CACAATAGCAAAGATAGAGA+AGG 0.590816 tig0018533:+85085 Msa1367690:CDS
CAGCAGATCCAGCAGCTCGG+AGG 0.593260 tig0018533:-85634 None:intergenic
GTCTGGAAGCGAAAATCGAA+AGG 0.593828 tig0018533:+88332 Msa1367690:CDS
GCAGATCCAGCAGCTCGGAG+GGG 0.594250 tig0018533:-85632 None:intergenic
GCTTCTGTTTGAATTGACAC+AGG 0.594321 tig0018533:+87849 Msa1367690:CDS
CTAACTTGGAACATCAGCTA+AGG 0.594396 tig0018533:-90954 None:intergenic
CCACATGTACCTATTACTAG+TGG 0.594959 tig0018533:+91301 Msa1367690:three_prime_UTR
CGTTCTCTGTCTTACATCAG+AGG 0.596320 tig0018533:-91139 None:intergenic
GGCGGAAGTGAAAAGAGGAG+TGG 0.597862 tig0018533:-85600 None:intergenic
CAAACTCAAAGTCACTCAAG+TGG 0.598578 tig0018533:+91220 Msa1367690:three_prime_UTR
GGAAGCAATCCATTTGGCAA+TGG 0.599286 tig0018533:-85579 None:intergenic
AACAGAGAGAGGTTAATCAC+AGG 0.599581 tig0018533:-86378 None:intergenic
CATGCCATTTAATTCTGTGG+TGG 0.601477 tig0018533:+91045 Msa1367690:three_prime_UTR
TTCCGGATAGAGGTGCCTCA+TGG 0.606371 tig0018533:+85360 Msa1367690:CDS
TCGCTGTTGAGTCTGTCTTG+TGG 0.606446 tig0018533:+85702 Msa1367690:CDS
TATCCTGAAATCCTCTATTG+GGG 0.606610 tig0018533:+86138 Msa1367690:CDS
CAATAGCCTTTAAGAAAGGG+CGG 0.607717 tig0018533:-85487 None:intergenic
TTCAGGAAAAGAAGCTGGCG+TGG 0.609126 tig0018533:+87738 Msa1367690:intron
ATATGATGTAGACCAAGATA+GGG 0.610894 tig0018533:-86016 None:intergenic
TTAGAAGAATCAGAATCAGA+AGG 0.614728 tig0018533:-85725 None:intergenic
TAACTTGGAACATCAGCTAA+GGG 0.615630 tig0018533:-90953 None:intergenic
AAGCCTACTGCTCCAAGTAG+TGG 0.620361 tig0018533:-87889 None:intergenic
ATATCAGGAGTAACTGTACA+TGG 0.620693 tig0018533:-88889 None:intergenic
CACATGTACCTATTACTAGT+GGG 0.622851 tig0018533:+91302 Msa1367690:three_prime_UTR
ATGCAACTTCCAACAGAGAG+AGG 0.623135 tig0018533:-86389 None:intergenic
GATGTTCCAAGTTAGGAGGA+GGG 0.627558 tig0018533:+90962 Msa1367690:exon
AAGCGCCTATTCAAGAAACA+TGG 0.627826 tig0018533:+85390 Msa1367690:CDS
GGTGGCTTAGGATGTGCGGT+TGG 0.630689 tig0018533:+84899 Msa1367690:CDS
ACTGGTAATACCTCTGCTGA+AGG 0.643612 tig0018533:+88039 Msa1367690:CDS
CCACTAGTAATAGGTACATG+TGG 0.644882 tig0018533:-91301 None:intergenic
TCATCTGTACAGACAAAGAG+AGG 0.647494 tig0018533:+87925 Msa1367690:CDS
GCTTCTTTCCCTATACTGGG+AGG 0.653552 tig0018533:+86087 Msa1367690:CDS
ATATGACACACCTTCAGCAG+AGG 0.656977 tig0018533:-88049 None:intergenic
GACAGCACTTAGAATAACAG+TGG 0.657583 tig0018533:-85771 None:intergenic
CTTTGTCAAAGGTCTCTCCA+CGG 0.660620 tig0018533:+86197 Msa1367690:intron
TTTATTTGACAATCTTCACA+AGG 0.665068 tig0018533:+86047 Msa1367690:CDS
ATGTTAAACTGATACTGTCG+GGG 0.666937 tig0018533:-89014 None:intergenic
CGTACCAGCCCATAAGCTTG+TGG 0.669025 tig0018533:-86414 None:intergenic
TAGCTGAAGCAATAGATCCG+TGG 0.670137 tig0018533:-86214 None:intergenic
ACTTCACAACTACTAATGGT+CGG 0.672014 tig0018533:+85044 Msa1367690:CDS
GAAGAAGATGGAATAATGGG+TGG 0.676584 tig0018533:+84881 Msa1367690:CDS
TCAGCTAAGGGACTGTATCG+TGG 0.677480 tig0018533:-90941 None:intergenic
TCTATTGCTTCAGCTAATAG+CGG 0.683916 tig0018533:+86221 Msa1367690:CDS
AATGGGTGGCTTAGGATGTG+CGG 0.692887 tig0018533:+84895 Msa1367690:CDS
CAGCATTGAAACCAGCAGAG+AGG 0.695496 tig0018533:-85661 None:intergenic
TGATGTAAGACAGAGAACGA+TGG 0.697813 tig0018533:+91143 Msa1367690:three_prime_UTR
GCACTCAAAAGATGGAACAT+GGG 0.703388 tig0018533:-91245 None:intergenic
ATACCCAACAATAAATACAG+CGG 0.708432 tig0018533:-85970 None:intergenic
ACCACCAATAAAGAGAGATG+GGG 0.717265 tig0018533:-86301 None:intergenic
AGGCGCTTCTCTCAACCATG+AGG 0.726086 tig0018533:-85375 None:intergenic
AAGATAGGGTCAATGAAACG+AGG 0.733840 tig0018533:-86002 None:intergenic
GAGTATGTTGCAATGCAATG+GGG 0.778875 tig0018533:+91324 Msa1367690:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATCATATTATATATATC+AGG - tig0018533:85930-85949 None:intergenic 10.0%
!! TGAAATTAAATAAATATGTT+CGG - tig0018533:89136-89155 None:intergenic 10.0%
!!! AATTTATTTCTTATTTTGAA+AGG + tig0018533:89156-89175 Msa1367690:intron 10.0%
!! TGATAATAACTATGAAATAT+AGG + tig0018533:86935-86954 Msa1367690:intron 15.0%
!! AGATTAATTTCTTATCTTAT+AGG - tig0018533:86995-87014 None:intergenic 15.0%
!!! GATATTATTTTATAGTATCT+TGG - tig0018533:87029-87048 None:intergenic 15.0%
!!! CATTTTTTATATCTACATTT+GGG - tig0018533:88576-88595 None:intergenic 15.0%
!!! ACATTTTTTATATCTACATT+TGG - tig0018533:88577-88596 None:intergenic 15.0%
!! GTATATATTGATATAGTAAA+AGG - tig0018533:88744-88763 None:intergenic 15.0%
!!! TTTTAGTATTTCCTTTATTA+TGG - tig0018533:89333-89352 None:intergenic 15.0%
!! TAATAAAGGAAATACTAAAA+TGG + tig0018533:89333-89352 Msa1367690:intron 15.0%
!!! TCAAAAGTTTTAAAAGAAAA+TGG - tig0018533:90521-90540 None:intergenic 15.0%
!!! TCTTTTAAAACTTTTGAAAA+TGG + tig0018533:90524-90543 Msa1367690:intron 15.0%
!!! AAATGTTTTTAGAAAGTAAA+CGG + tig0018533:90699-90718 Msa1367690:intron 15.0%
!! GATAATAGAAATTTATCAAA+CGG - tig0018533:91001-91020 None:intergenic 15.0%
!! TAAAACAATGTGAAAATATT+TGG - tig0018533:91089-91108 None:intergenic 15.0%
!! TAATTATAGAAGGAAATTTA+AGG + tig0018533:91174-91193 Msa1367690:three_prime_UTR 15.0%
!! CATCATACTTAAAAAAAGAA+AGG - tig0018533:85275-85294 None:intergenic 20.0%
!! TTCAAAATCATGATATGAAT+CGG - tig0018533:85891-85910 None:intergenic 20.0%
!! ATAACAAGATAATATATTGC+AGG - tig0018533:86699-86718 None:intergenic 20.0%
!! ATAAATCTATGAATTCAGAA+TGG + tig0018533:87102-87121 Msa1367690:intron 20.0%
!!! TGTTTGAAACAAATAAGAAA+AGG + tig0018533:87323-87342 Msa1367690:intron 20.0%
!!! GTTTGAAACAAATAAGAAAA+GGG + tig0018533:87324-87343 Msa1367690:intron 20.0%
!! TGTAATATATAGTAGTAACA+TGG + tig0018533:87454-87473 Msa1367690:intron 20.0%
!!! AAAATTTTCTCATATCATGT+GGG + tig0018533:87480-87499 Msa1367690:intron 20.0%
!! AGACAAATGATATAATATAC+TGG - tig0018533:87708-87727 None:intergenic 20.0%
!! ATGAAACAATGAATTATGTA+AGG + tig0018533:88124-88143 Msa1367690:CDS 20.0%
!! TGATACATAAGATAATAGAT+TGG + tig0018533:88483-88502 Msa1367690:intron 20.0%
!!! TCTGAATTATGTGTTTTAAA+TGG + tig0018533:88850-88869 Msa1367690:CDS 20.0%
!!! CTAAACCAATTTTATGAAAA+GGG - tig0018533:89090-89109 None:intergenic 20.0%
!!! ACTAAACCAATTTTATGAAA+AGG - tig0018533:89091-89110 None:intergenic 20.0%
!! TCACTTAAACTAATAAACAT+AGG + tig0018533:89412-89431 Msa1367690:intron 20.0%
!!! TCGATTTTCAATGAATTTTT+TGG + tig0018533:89847-89866 Msa1367690:intron 20.0%
!!! CGATTTTCAATGAATTTTTT+GGG + tig0018533:89848-89867 Msa1367690:intron 20.0%
!! ATACAAAATCCTTATAATGA+CGG - tig0018533:90189-90208 None:intergenic 20.0%
!! GTGAGAAAAATATTAAATCT+AGG - tig0018533:90499-90518 None:intergenic 20.0%
!! GGATTATCTTTAATTATAGA+AGG + tig0018533:91164-91183 Msa1367690:three_prime_UTR 20.0%
! TATTCAAGAAACATGGAAAA+GGG + tig0018533:85397-85416 Msa1367690:CDS 25.0%
! TTTATTTGACAATCTTCACA+AGG + tig0018533:86047-86066 Msa1367690:CDS 25.0%
!!! TTTGGTATTTCTTGTTTTCT+TGG + tig0018533:86460-86479 Msa1367690:intron 25.0%
! CGTTAAATTAGTAAACCTTA+TGG - tig0018533:86643-86662 None:intergenic 25.0%
!! TATCTTGTTATCTTAGTTGA+AGG + tig0018533:86708-86727 Msa1367690:intron 25.0%
!! GCTTATTTCTCATAAAGAAA+AGG - tig0018533:86738-86757 None:intergenic 25.0%
! ATAAGTTTCCTTGTGTAATT+AGG - tig0018533:86913-86932 None:intergenic 25.0%
!!! TAGTCTAAGATATTTTGAGA+TGG + tig0018533:86960-86979 Msa1367690:intron 25.0%
!!! AGTCTAAGATATTTTGAGAT+GGG + tig0018533:86961-86980 Msa1367690:intron 25.0%
!!! TTTGTATCAAGTTTTATCGT+GGG - tig0018533:87081-87100 None:intergenic 25.0%
!!! TTTTGTATCAAGTTTTATCG+TGG - tig0018533:87082-87101 None:intergenic 25.0%
!!! TATGAATTCAGAATGGATTA+GGG + tig0018533:87109-87128 Msa1367690:intron 25.0%
! AAAACAAACTAAAACGGTAT+TGG + tig0018533:87194-87213 Msa1367690:intron 25.0%
! AAACAAACTAAAACGGTATT+GGG + tig0018533:87195-87214 Msa1367690:intron 25.0%
! ATCTTCCATGATAAAGAAAA+AGG + tig0018533:87366-87385 Msa1367690:intron 25.0%
!! GAAAATTTTCTCATATCATG+TGG + tig0018533:87479-87498 Msa1367690:intron 25.0%
!! TCAGAGTTCAAAACAAATTT+TGG + tig0018533:87538-87557 Msa1367690:intron 25.0%
! AGATCTATTACTTTAGTAAG+CGG - tig0018533:88207-88226 None:intergenic 25.0%
! CTTACAGTTGTAAATATTCT+AGG - tig0018533:88422-88441 None:intergenic 25.0%
! GGGTTAAATGTAATAAATGT+TGG - tig0018533:88556-88575 None:intergenic 25.0%
! CTAGTTTACATTACATCTAT+AGG - tig0018533:88605-88624 None:intergenic 25.0%
!!! GAATTATGTGTTTTAAATGG+AGG + tig0018533:88853-88872 Msa1367690:CDS 25.0%
! TATGAAAGAACTTATCCAAT+TGG + tig0018533:88982-89001 Msa1367690:CDS 25.0%
!! ATGATCCCTTTTCATAAAAT+TGG + tig0018533:89082-89101 Msa1367690:intron 25.0%
! TAAAGGAAATACTAAAATGG+TGG + tig0018533:89336-89355 Msa1367690:intron 25.0%
! GTTTAAGTGAAAATGAAAAC+AGG - tig0018533:89402-89421 None:intergenic 25.0%
! CATAGGAGAATATAGATTTA+AGG + tig0018533:89429-89448 Msa1367690:intron 25.0%
!!! CACTTTTTTTTGTTTGGTTT+AGG + tig0018533:89506-89525 Msa1367690:intron 25.0%
! ATATCAAACACGAAAGAAAA+GGG + tig0018533:89749-89768 Msa1367690:intron 25.0%
!!! ACAAATTTTTTCCAAAATGC+AGG + tig0018533:90394-90413 Msa1367690:intron 25.0%
!!! CAAATTTTTTCCAAAATGCA+GGG + tig0018533:90395-90414 Msa1367690:intron 25.0%
! AAATTAGAAGCAACTTTATG+TGG + tig0018533:90768-90787 Msa1367690:intron 25.0%
! AATTAGAAGCAACTTTATGT+GGG + tig0018533:90769-90788 Msa1367690:intron 25.0%
!!! AAGCTCTTTAGAGTTATAAA+GGG + tig0018533:90833-90852 Msa1367690:intron 25.0%
!! GTAACTTTTAGATGAAATAG+AGG - tig0018533:91200-91219 None:intergenic 25.0%
! ATGAGTTGTTGTTGTTATAG+TGG + tig0018533:84847-84866 Msa1367690:intron 30.0%
! TTGTTGTTGTTATAGTGGAA+TGG + tig0018533:84852-84871 Msa1367690:intron 30.0%
! TTCTGAATGGATTCGTAATT+CGG + tig0018533:85141-85160 Msa1367690:CDS 30.0%
ATAATATCTTCATGCTTGGT+TGG + tig0018533:85166-85185 Msa1367690:CDS 30.0%
TGTGATCAATATCAATATGC+AGG + tig0018533:85304-85323 Msa1367690:intron 30.0%
!! ATGAAATTCGTGATTTGTTG+TGG + tig0018533:85330-85349 Msa1367690:CDS 30.0%
!! TGAAATTCGTGATTTGTTGT+GGG + tig0018533:85331-85350 Msa1367690:CDS 30.0%
! CTTTTCCATGTTTCTTGAAT+AGG - tig0018533:85398-85417 None:intergenic 30.0%
CTATTCAAGAAACATGGAAA+AGG + tig0018533:85396-85415 Msa1367690:CDS 30.0%
ATTGCAGCTTCTATTACTTT+AGG + tig0018533:85506-85525 Msa1367690:CDS 30.0%
TTAGAAGAATCAGAATCAGA+AGG - tig0018533:85728-85747 None:intergenic 30.0%
AATAACAGTGGAAGTAGTAT+TGG - tig0018533:85762-85781 None:intergenic 30.0%
ATACCCAACAATAAATACAG+CGG - tig0018533:85973-85992 None:intergenic 30.0%
TTATTGTTGGGTATCTTATG+TGG + tig0018533:85979-85998 Msa1367690:CDS 30.0%
ATATGATGTAGACCAAGATA+GGG - tig0018533:86019-86038 None:intergenic 30.0%
TATATGATGTAGACCAAGAT+AGG - tig0018533:86020-86039 None:intergenic 30.0%
TATATCCTGAAATCCTCTAT+TGG + tig0018533:86136-86155 Msa1367690:CDS 30.0%
ATATCCTGAAATCCTCTATT+GGG + tig0018533:86137-86156 Msa1367690:CDS 30.0%
! ATCGTGTTTTTCTTCTCTTT+GGG + tig0018533:86487-86506 Msa1367690:intron 30.0%
ATTGTGAACACTGCAAATAT+AGG - tig0018533:86583-86602 None:intergenic 30.0%
CATAAGATAACTGAAGAGAA+AGG - tig0018533:86671-86690 None:intergenic 30.0%
! TGGCATTTTATCTTAGTTGA+AGG + tig0018533:86775-86794 Msa1367690:intron 30.0%
TTTAAATATATGCCAGTGCT+TGG - tig0018533:86868-86887 None:intergenic 30.0%
TTCCTTGTGTAATTAGGATT+TGG - tig0018533:86907-86926 None:intergenic 30.0%
!!! GTCTAAGATATTTTGAGATG+GGG + tig0018533:86962-86981 Msa1367690:intron 30.0%
! CTATGAATTCAGAATGGATT+AGG + tig0018533:87108-87127 Msa1367690:intron 30.0%
ACTGGCAAAACAAACTAAAA+CGG + tig0018533:87188-87207 Msa1367690:intron 30.0%
TGAAACAAATAAGAAAAGGG+AGG + tig0018533:87327-87346 Msa1367690:intron 30.0%
GAAACAAATAAGAAAAGGGA+GGG + tig0018533:87328-87347 Msa1367690:intron 30.0%
TTCCATGATAAAGAAAAAGG+AGG + tig0018533:87369-87388 Msa1367690:intron 30.0%
TCCATGATAAAGAAAAAGGA+GGG + tig0018533:87370-87389 Msa1367690:intron 30.0%
! TATTACAGACATGTTAGTCT+TGG - tig0018533:87441-87460 None:intergenic 30.0%
!!! ATTTGTTTTGAACTCTGAAC+TGG - tig0018533:87536-87555 None:intergenic 30.0%
CTTGAAAAAAGACCTAGAAA+GGG + tig0018533:87666-87685 Msa1367690:intron 30.0%
! TTTGTCTTTTGCAAATGTTC+AGG + tig0018533:87721-87740 Msa1367690:intron 30.0%
!! CAAGAAGATATTTCTGGAAA+CGG - tig0018533:88000-88019 None:intergenic 30.0%
GATCTACAAGAAGATATTTC+TGG - tig0018533:88006-88025 None:intergenic 30.0%
AGATCAATTGAGTTATCTAC+TGG + tig0018533:88021-88040 Msa1367690:CDS 30.0%
TTTGAGTAAATCATGTCAAG+TGG + tig0018533:88071-88090 Msa1367690:intron 30.0%
! TGTAAGGAGAACATTAGTTT+CGG + tig0018533:88140-88159 Msa1367690:CDS 30.0%
GATACTGATGATACTTTGAT+TGG + tig0018533:88264-88283 Msa1367690:CDS 30.0%
!! TTGATTGGTTTATTGACACT+TGG + tig0018533:88279-88298 Msa1367690:CDS 30.0%
TAAATTTATGCCACTACTTG+TGG + tig0018533:88443-88462 Msa1367690:intron 30.0%
!! AAATTTAACCTGGCATTGAT+TGG + tig0018533:88527-88546 Msa1367690:intron 30.0%
CACAATAAAGTGGTTTAACT+TGG - tig0018533:88780-88799 None:intergenic 30.0%
CAAGTTAAACCACTTTATTG+TGG + tig0018533:88778-88797 Msa1367690:intron 30.0%
TATGTAAAGCCACAATAAAG+TGG - tig0018533:88790-88809 None:intergenic 30.0%
GCTTTACATATCTGACTATT+TGG + tig0018533:88800-88819 Msa1367690:intron 30.0%
AAACTAAAATCTCCTGTAAG+AGG - tig0018533:88831-88850 None:intergenic 30.0%
TCATAGATATTCTTCACAAC+TGG - tig0018533:88967-88986 None:intergenic 30.0%
TATGTTAAACTGATACTGTC+GGG - tig0018533:89018-89037 None:intergenic 30.0%
GTATGTTAAACTGATACTGT+CGG - tig0018533:89019-89038 None:intergenic 30.0%
ACAGTATCAGTTTAACATAC+AGG + tig0018533:89019-89038 Msa1367690:CDS 30.0%
! TAAAATTGGTTTAGTGATCC+AGG + tig0018533:89096-89115 Msa1367690:intron 30.0%
GTGTAAAACACAACAGAATA+AGG + tig0018533:89248-89267 Msa1367690:intron 30.0%
GGATGCAAATTCCATAATAA+AGG + tig0018533:89319-89338 Msa1367690:intron 30.0%
!! ACTAAAATGGTGGATCTTAA+AGG + tig0018533:89346-89365 Msa1367690:intron 30.0%
TGGATCTTAAAGGAAAATCT+AGG + tig0018533:89356-89375 Msa1367690:intron 30.0%
!!! GTTTGACCATTTTTTGGTTT+TGG + tig0018533:89477-89496 Msa1367690:intron 30.0%
! ACCAAACAAAAAAAAGTGCA+GGG - tig0018533:90424-90443 None:intergenic 30.0%
! AACCAAACAAAAAAAAGTGC+AGG - tig0018533:90423-90442 None:intergenic 30.0%
!!! CAAATTTTTTCCAAAGTGCA+GGG - tig0018533:89533-89552 None:intergenic 30.0%
!!! ACAAATTTTTTCCAAAGTGC+AGG - tig0018533:89534-89553 None:intergenic 30.0%
TTTAACAGTCAACTAACAGA+GGG - tig0018533:90364-90383 None:intergenic 30.0%
! TTTTAACAGTCAACTAACAG+AGG - tig0018533:90363-90382 None:intergenic 30.0%
GATATCAAACACGAAAGAAA+AGG + tig0018533:89748-89767 Msa1367690:intron 30.0%
TATCAAACACGAAAGAAAAG+GGG + tig0018533:89750-89769 Msa1367690:intron 30.0%
AAACAATTGAACTTGCAGAA+AGG + tig0018533:89775-89794 Msa1367690:intron 30.0%
AACAATTGAACTTGCAGAAA+GGG + tig0018533:89776-89795 Msa1367690:intron 30.0%
ATTGAAAATCGAACAAGAAC+AGG - tig0018533:89839-89858 None:intergenic 30.0%
!! TAATTGATTTTGCAGAAACG+CGG - tig0018533:90040-90059 None:intergenic 30.0%
ACGATTAATCCGTCATTATA+AGG + tig0018533:90177-90196 Msa1367690:intron 30.0%
! TTTTAACAGTCAACTAACAG+AGG + tig0018533:90363-90382 Msa1367690:intron 30.0%
TTTAACAGTCAACTAACAGA+GGG + tig0018533:90364-90383 Msa1367690:intron 30.0%
! AACCAAACAAAAAAAAGTGC+AGG + tig0018533:90423-90442 Msa1367690:intron 30.0%
! ACCAAACAAAAAAAAGTGCA+GGG + tig0018533:90424-90443 Msa1367690:intron 30.0%
!!! GTTTGACCATTTTTTGGTTT+TGG - tig0018533:89477-89496 None:intergenic 30.0%
!! CAAGCTCTTTAGAGTTATAA+AGG + tig0018533:90832-90851 Msa1367690:intron 30.0%
!!! TCGATGCTTTTTTGTTTGTA+TGG + tig0018533:90872-90891 Msa1367690:intron 30.0%
! TTGTTGTTATAGTGGAATGG+CGG + tig0018533:84855-84874 Msa1367690:intron 35.0%
! TGATGATAATGCCAACTACT+TGG - tig0018533:84947-84966 None:intergenic 35.0%
TGCAATAACAGTAACACGTT+CGG + tig0018533:84982-85001 Msa1367690:CDS 35.0%
TGTTTGAGGAAGAAGAAGAA+AGG - tig0018533:85012-85031 None:intergenic 35.0%
ACCATTAGTAGTTGTGAAGT+TGG - tig0018533:85044-85063 None:intergenic 35.0%
ACTTCACAACTACTAATGGT+CGG + tig0018533:85044-85063 Msa1367690:CDS 35.0%
!! CTATCTTTGCTATTGTGAAG+CGG - tig0018533:85082-85101 None:intergenic 35.0%
CACAATAGCAAAGATAGAGA+AGG + tig0018533:85085-85104 Msa1367690:CDS 35.0%
! TCTGAATGGATTCGTAATTC+GGG + tig0018533:85142-85161 Msa1367690:CDS 35.0%
GGGAATAATATCTTCATGCT+TGG + tig0018533:85162-85181 Msa1367690:CDS 35.0%
! CTGCAATAGCCTTTAAGAAA+GGG - tig0018533:85493-85512 None:intergenic 35.0%
TTGGAAATTCCATTGCCAAA+TGG + tig0018533:85570-85589 Msa1367690:CDS 35.0%
!! AGTGGAAGTAGTATTGGTAA+GGG - tig0018533:85756-85775 None:intergenic 35.0%
TACCCAACAATAAATACAGC+GGG - tig0018533:85972-85991 None:intergenic 35.0%
! AGTATAGGGAAAGAAGCTTT+TGG - tig0018533:86084-86103 None:intergenic 35.0%
AAAAGCTTCTTTCCCTATAC+TGG + tig0018533:86083-86102 Msa1367690:CDS 35.0%
AAAGCTTCTTTCCCTATACT+GGG + tig0018533:86084-86103 Msa1367690:CDS 35.0%
TATCCTGAAATCCTCTATTG+GGG + tig0018533:86138-86157 Msa1367690:CDS 35.0%
TCTATTGCTTCAGCTAATAG+CGG + tig0018533:86221-86240 Msa1367690:CDS 35.0%
ATAATAGCCTCCTACTAATC+CGG - tig0018533:86280-86299 None:intergenic 35.0%
CAAAGAGAAGAAAAACACGA+TGG - tig0018533:86488-86507 None:intergenic 35.0%
! CATCGTGTTTTTCTTCTCTT+TGG + tig0018533:86486-86505 Msa1367690:intron 35.0%
! TCGTGTTTTTCTTCTCTTTG+GGG + tig0018533:86488-86507 Msa1367690:intron 35.0%
!! TCTTTCTAAGATCACTTCCT+TGG + tig0018533:86527-86546 Msa1367690:intron 35.0%
AAGGCTCATTTGTATATCCA+AGG - tig0018533:86547-86566 None:intergenic 35.0%
! TATACAAATGAGCCTTTTCC+TGG + tig0018533:86551-86570 Msa1367690:intron 35.0%
AAATTTAGACAAGCGCCATA+AGG + tig0018533:86625-86644 Msa1367690:intron 35.0%
AGCTTCTCATGCATATAACT+TGG + tig0018533:86755-86774 Msa1367690:intron 35.0%
AAGGTTTACTCTCTATTGCT+TGG + tig0018533:86794-86813 Msa1367690:intron 35.0%
AGGTTTACTCTCTATTGCTT+GGG + tig0018533:86795-86814 Msa1367690:intron 35.0%
TGATACAAAAAACCAAGCAC+TGG + tig0018533:86853-86872 Msa1367690:intron 35.0%
CTCCAAATCCTAATTACACA+AGG + tig0018533:86902-86921 Msa1367690:intron 35.0%
!!! CTTGGTTTTGACATTTTGCT+CGG - tig0018533:87269-87288 None:intergenic 35.0%
AGCAAAATGTCAAAACCAAG+AGG + tig0018533:87269-87288 Msa1367690:intron 35.0%
! ACCCTCCTTTTTCTTTATCA+TGG - tig0018533:87374-87393 None:intergenic 35.0%
! TAACCTTGATAGTATCTTCC+AGG + tig0018533:87395-87414 Msa1367690:intron 35.0%
!! TGTTAGTCTTGGTTAGTGTA+TGG - tig0018533:87430-87449 None:intergenic 35.0%
TATCATGTGGGACTAGATTA+TGG + tig0018533:87492-87511 Msa1367690:intron 35.0%
CTATTTAATGTTGCAGCGTA+TGG + tig0018533:87572-87591 Msa1367690:intron 35.0%
!! CTGCTACACTTTGATTTGTT+GGG + tig0018533:87612-87631 Msa1367690:CDS 35.0%
GCTTGAAAAAAGACCTAGAA+AGG + tig0018533:87665-87684 Msa1367690:intron 35.0%
AAATGTTCAGGAAAAGAAGC+TGG + tig0018533:87733-87752 Msa1367690:intron 35.0%
! CATATCAAAGTTCCTTTTGC+AGG + tig0018533:87771-87790 Msa1367690:CDS 35.0%
TTGAATTGACACAGGACTAT+CGG + tig0018533:87857-87876 Msa1367690:CDS 35.0%
CATGAAGACAAGATTTGTGA+CGG + tig0018533:88167-88186 Msa1367690:CDS 35.0%
!! ATATAGTTTTGCAACCTTCG+TGG + tig0018533:88393-88412 Msa1367690:intron 35.0%
TATCTATCAACCACAAGTAG+TGG - tig0018533:88456-88475 None:intergenic 35.0%
ACGATACTGCAAATTTAACC+TGG + tig0018533:88517-88536 Msa1367690:intron 35.0%
ATGTATGCATGAAATCCACA+AGG - tig0018533:88654-88673 None:intergenic 35.0%
GGATTTCATGCATACATGTT+TGG + tig0018533:88657-88676 Msa1367690:intron 35.0%
GAGCTGAATTGAGAAATTAG+TGG - tig0018533:88683-88702 None:intergenic 35.0%
ATATCAGGAGTAACTGTACA+TGG - tig0018533:88892-88911 None:intergenic 35.0%
ATGTACAGTTACTCCTGATA+TGG + tig0018533:88891-88910 Msa1367690:CDS 35.0%
GCATGATAAAGTTCCATATC+AGG - tig0018533:88907-88926 None:intergenic 35.0%
TCATGCTCAAATGATCATGA+AGG + tig0018533:88921-88940 Msa1367690:CDS 35.0%
CAAATGATCATGAAGGAACA+TGG + tig0018533:88928-88947 Msa1367690:CDS 35.0%
ATGTTAAACTGATACTGTCG+GGG - tig0018533:89017-89036 None:intergenic 35.0%
! TTCGATTCGAGTCTTGAATT+CGG + tig0018533:89279-89298 Msa1367690:intron 35.0%
AGGAAATATGAAGAGCAAAC+GGG - tig0018533:89382-89401 None:intergenic 35.0%
CAGGAAATATGAAGAGCAAA+CGG - tig0018533:89383-89402 None:intergenic 35.0%
CAAAAAATGGTCAAACTGCA+AGG - tig0018533:90455-90474 None:intergenic 35.0%
!!! CTTGCAGTTTGACCATTTTT+TGG + tig0018533:89471-89490 Msa1367690:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + tig0018533:89500-89519 Msa1367690:intron 35.0%
ACAATTGAACTTGCAGAAAG+GGG + tig0018533:89777-89796 Msa1367690:intron 35.0%
!! CAAGAACAGGTTGGATTTTT+GGG - tig0018533:89826-89845 None:intergenic 35.0%
!! ACAAGAACAGGTTGGATTTT+TGG - tig0018533:89827-89846 None:intergenic 35.0%
AAAATCGAACAAGAACAGGT+TGG - tig0018533:89835-89854 None:intergenic 35.0%
GGTGAACAACAACTCAAAAT+GGG - tig0018533:89938-89957 None:intergenic 35.0%
TGGTGAACAACAACTCAAAA+TGG - tig0018533:89939-89958 None:intergenic 35.0%
AGTGAAACGTAGCTTAAGTT+GGG - tig0018533:90071-90090 None:intergenic 35.0%
!! GGTATTGCTATTGAGGATTT+TGG + tig0018533:90150-90169 Msa1367690:intron 35.0%
!! ATAATGACGGATTAATCGTG+AGG - tig0018533:90176-90195 None:intergenic 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG - tig0018533:89500-89519 None:intergenic 35.0%
!!! CTTGCAGTTTGACCATTTTT+TGG - tig0018533:89471-89490 None:intergenic 35.0%
CAAAAAATGGTCAAACTGCA+AGG + tig0018533:90455-90474 Msa1367690:intron 35.0%
CAATTGTGATAGAGAGAAGA+TGG - tig0018533:90601-90620 None:intergenic 35.0%
!! AAGTAAACGGTGTCATTAGA+TGG + tig0018533:90712-90731 Msa1367690:intron 35.0%
!! AGTAAACGGTGTCATTAGAT+GGG + tig0018533:90713-90732 Msa1367690:intron 35.0%
CAACTTTATGTGGGAAAGAA+TGG + tig0018533:90778-90797 Msa1367690:intron 35.0%
AAAGAATGGTGTAAGAAGAG+TGG + tig0018533:90792-90811 Msa1367690:intron 35.0%
TAACTTGGAACATCAGCTAA+GGG - tig0018533:90956-90975 None:intergenic 35.0%
GGTTAAACTTGACGTGTTAA+AGG - tig0018533:91026-91045 None:intergenic 35.0%
! AACCATGCCATTTAATTCTG+TGG + tig0018533:91042-91061 Msa1367690:three_prime_UTR 35.0%
ACAACCACCACAGAATTAAA+TGG - tig0018533:91052-91071 None:intergenic 35.0%
TTTGCTGCTGAGTATTCTTA+CGG - tig0018533:91114-91133 None:intergenic 35.0%
CACATGTACCTATTACTAGT+GGG + tig0018533:91302-91321 Msa1367690:three_prime_UTR 35.0%
AACATACTCCCACTAGTAAT+AGG - tig0018533:91313-91332 None:intergenic 35.0%
! TGTTGTTATAGTGGAATGGC+GGG + tig0018533:84856-84875 Msa1367690:intron 40.0%
GGGGAAGAAGATGGAATAAT+GGG + tig0018533:84878-84897 Msa1367690:CDS 40.0%
! GAAGAAGATGGAATAATGGG+TGG + tig0018533:84881-84900 Msa1367690:CDS 40.0%
GAGTTCTTCAACCAAGTAGT+TGG + tig0018533:84933-84952 Msa1367690:intron 40.0%
GCAATAACAGTAACACGTTC+GGG + tig0018533:84983-85002 Msa1367690:CDS 40.0%
! GTTGGCGTAATTCTTGTTTG+AGG - tig0018533:85026-85045 None:intergenic 40.0%
GCCAACTTCACAACTACTAA+TGG + tig0018533:85040-85059 Msa1367690:CDS 40.0%
AGATAGAGAAGGAGAAGTTG+AGG + tig0018533:85096-85115 Msa1367690:CDS 40.0%
CGTCTTCTTCTTCTTCTGAA+TGG + tig0018533:85128-85147 Msa1367690:CDS 40.0%
!! ATTCGTGATTTGTTGTGGGA+TGG + tig0018533:85335-85354 Msa1367690:CDS 40.0%
!! TTCGTGATTTGTTGTGGGAT+GGG + tig0018533:85336-85355 Msa1367690:CDS 40.0%
AAGCGCCTATTCAAGAAACA+TGG + tig0018533:85390-85409 Msa1367690:CDS 40.0%
! GTAATACTTGTTCCCGCTTT+TGG + tig0018533:85419-85438 Msa1367690:CDS 40.0%
AACAAGAAGACCTCCAAAAG+CGG - tig0018533:85435-85454 None:intergenic 40.0%
GGGAATTGGAATTGGAAAGA+AGG - tig0018533:85469-85488 None:intergenic 40.0%
! AATAGCCTTTAAGAAAGGGC+GGG - tig0018533:85489-85508 None:intergenic 40.0%
! CAATAGCCTTTAAGAAAGGG+CGG - tig0018533:85490-85509 None:intergenic 40.0%
! GCTGCAATAGCCTTTAAGAA+AGG - tig0018533:85494-85513 None:intergenic 40.0%
GCTTCTATTACTTTAGGCAC+TGG + tig0018533:85512-85531 Msa1367690:CDS 40.0%
!! TTTAGGCACTGGTAATTCCT+TGG + tig0018533:85523-85542 Msa1367690:CDS 40.0%
!! TTAGGCACTGGTAATTCCTT+GGG + tig0018533:85524-85543 Msa1367690:CDS 40.0%
!! CAGTGGAAGTAGTATTGGTA+AGG - tig0018533:85757-85776 None:intergenic 40.0%
GACAGCACTTAGAATAACAG+TGG - tig0018533:85774-85793 None:intergenic 40.0%
!! GCTTCTGTCATTTCTGAGAT+TGG + tig0018533:85797-85816 Msa1367690:CDS 40.0%
CTCCCGCTGTATTTATTGTT+GGG + tig0018533:85967-85986 Msa1367690:CDS 40.0%
AAGATAGGGTCAATGAAACG+AGG - tig0018533:86005-86024 None:intergenic 40.0%
TCGTTTCATTGACCCTATCT+TGG + tig0018533:86004-86023 Msa1367690:CDS 40.0%
CAGATAAACCTCCCAGTATA+GGG - tig0018533:86098-86117 None:intergenic 40.0%
ACAGATAAACCTCCCAGTAT+AGG - tig0018533:86099-86118 None:intergenic 40.0%
ATACTGGGAGGTTTATCTGT+AGG + tig0018533:86099-86118 Msa1367690:CDS 40.0%
CAGGATATAGCAATGCTATG+AGG - tig0018533:86125-86144 None:intergenic 40.0%
AAACCCCAATAGAGGATTTC+AGG - tig0018533:86144-86163 None:intergenic 40.0%
CATTCTCAAAACCCCAATAG+AGG - tig0018533:86152-86171 None:intergenic 40.0%
TATGCCCCATCTCTCTTTAT+TGG + tig0018533:86297-86316 Msa1367690:CDS 40.0%
ACCACCAATAAAGAGAGATG+GGG - tig0018533:86304-86323 None:intergenic 40.0%
CACCACCAATAAAGAGAGAT+GGG - tig0018533:86305-86324 None:intergenic 40.0%
AACAGAGAGAGGTTAATCAC+AGG - tig0018533:86381-86400 None:intergenic 40.0%
TGTGATTAACCTCTCTCTGT+TGG + tig0018533:86380-86399 Msa1367690:CDS 40.0%
TTGCATCACCACAAGCTTAT+GGG + tig0018533:86406-86425 Msa1367690:CDS 40.0%
!! TGTTTTTCTTCTCTTTGGGG+TGG + tig0018533:86491-86510 Msa1367690:intron 40.0%
!!! GTTTTTCTTCTCTTTGGGGT+GGG + tig0018533:86492-86511 Msa1367690:intron 40.0%
TATAGGAATCCTCCAGGAAA+AGG - tig0018533:86566-86585 None:intergenic 40.0%
TGCAAATATAGGAATCCTCC+AGG - tig0018533:86572-86591 None:intergenic 40.0%
!! GTATCAAGTTTTATCGTGGG+TGG - tig0018533:87078-87097 None:intergenic 40.0%
!!! AGCACTAGTTTTGTCTCAGT+TGG - tig0018533:87142-87161 None:intergenic 40.0%
TACATCAGCCAAAGCTTAAC+TGG + tig0018533:87226-87245 Msa1367690:intron 40.0%
! GCTTTAAACTTCTGTCCTCT+TGG - tig0018533:87287-87306 None:intergenic 40.0%
TATCATGGAAGATGCTCTCA+AGG - tig0018533:87359-87378 None:intergenic 40.0%
CATCCTGGAAGATACTATCA+AGG - tig0018533:87401-87420 None:intergenic 40.0%
AGTGTATGGTTTCTTCATCC+TGG - tig0018533:87416-87435 None:intergenic 40.0%
!! GCTGCTACACTTTGATTTGT+TGG + tig0018533:87611-87630 Msa1367690:CDS 40.0%
TTCAGTCTCTAACCCTTTCT+AGG - tig0018533:87681-87700 None:intergenic 40.0%
! TCAAAGTTCCTTTTGCAGGT+TGG + tig0018533:87775-87794 Msa1367690:intron 40.0%
GCTTCTGTTTGAATTGACAC+AGG + tig0018533:87849-87868 Msa1367690:CDS 40.0%
!! CGGATTGTTTTACCACTACT+TGG + tig0018533:87877-87896 Msa1367690:CDS 40.0%
TCATCTGTACAGACAAAGAG+AGG + tig0018533:87925-87944 Msa1367690:CDS 40.0%
AGACAAAGAGAGGTGATGAA+AGG + tig0018533:87935-87954 Msa1367690:CDS 40.0%
GACAAAGAGAGGTGATGAAA+GGG + tig0018533:87936-87955 Msa1367690:CDS 40.0%
CGTCACAAATCTTGTCTTCA+TGG - tig0018533:88169-88188 None:intergenic 40.0%
CATTCGAGCGTTTGGAAAAT+CGG + tig0018533:88305-88324 Msa1367690:CDS 40.0%
TTTGGAAAATCGGCAAAGTC+TGG + tig0018533:88315-88334 Msa1367690:CDS 40.0%
AATATTCTAGGTTGCCACGA+AGG - tig0018533:88410-88429 None:intergenic 40.0%
TTTGCAGTATCGTCAGAACT+AGG - tig0018533:88510-88529 None:intergenic 40.0%
AGCACAAGCACACACTTAAA+AGG + tig0018533:88627-88646 Msa1367690:intron 40.0%
GCACAAGCACACACTTAAAA+GGG + tig0018533:88628-88647 Msa1367690:intron 40.0%
AAATGAGTCAGAATCGCTCA+TGG + tig0018533:88703-88722 Msa1367690:intron 40.0%
! AACTTATCCAATTGGCCTAC+TGG + tig0018533:88990-89009 Msa1367690:CDS 40.0%
TCGGAGAAAGACATATTTCC+TGG - tig0018533:89117-89136 None:intergenic 40.0%
CTGAACTAAGCTTCATGACA+TGG + tig0018533:89213-89232 Msa1367690:intron 40.0%
CTAAGCTTCATGACATGGAA+TGG + tig0018533:89218-89237 Msa1367690:intron 40.0%
CATGACATGGAATGGAACAA+AGG + tig0018533:89226-89245 Msa1367690:intron 40.0%
CAGGGACCAAAACCAAAAAA+TGG - tig0018533:90442-90461 None:intergenic 40.0%
!!! TTTGTTTTTAGTGTGCCACG+TGG - tig0018533:89633-89652 None:intergenic 40.0%
! AAAGGGGAAGAAGTGGATTT+AGG + tig0018533:89793-89812 Msa1367690:intron 40.0%
! AAGGGGAAGAAGTGGATTTA+GGG + tig0018533:89794-89813 Msa1367690:intron 40.0%
AAAATGGGCAGAAACAACGA+AGG - tig0018533:89923-89942 None:intergenic 40.0%
TTCCGTTCATCAGTTTGACT+TGG + tig0018533:89995-90014 Msa1367690:intron 40.0%
TGCCAAGTCAAACTGATGAA+CGG - tig0018533:90000-90019 None:intergenic 40.0%
CAGTGAAACGTAGCTTAAGT+TGG - tig0018533:90072-90091 None:intergenic 40.0%
! CGTTTGTGGTATTGCTATTG+AGG + tig0018533:90143-90162 Msa1367690:intron 40.0%
!!! TTGTTTTTTAGTGTGCCACG+TGG + tig0018533:90295-90314 Msa1367690:intron 40.0%
! TGGTTTAAGTCCCTGCATTT+TGG - tig0018533:90408-90427 None:intergenic 40.0%
CAGGGACCAAAACCAAAAAA+TGG + tig0018533:90442-90461 Msa1367690:intron 40.0%
GTGATAGAGAGAAGATGGAA+GGG - tig0018533:90596-90615 None:intergenic 40.0%
TGTGATAGAGAGAAGATGGA+AGG - tig0018533:90597-90616 None:intergenic 40.0%
!! GTAAACGGTGTCATTAGATG+GGG + tig0018533:90714-90733 Msa1367690:intron 40.0%
AATGGTGTAAGAAGAGTGGA+GGG + tig0018533:90796-90815 Msa1367690:intron 40.0%
TGTTGTTGAATGCAGTGCTT+TGG + tig0018533:90918-90937 Msa1367690:intron 40.0%
CTAACTTGGAACATCAGCTA+AGG - tig0018533:90957-90976 None:intergenic 40.0%
CTTAGCTGATGTTCCAAGTT+AGG + tig0018533:90955-90974 Msa1367690:exon 40.0%
CACCACAGAATTAAATGGCA+TGG - tig0018533:91047-91066 None:intergenic 40.0%
! CATGCCATTTAATTCTGTGG+TGG + tig0018533:91045-91064 Msa1367690:three_prime_UTR 40.0%
TGATGTAAGACAGAGAACGA+TGG + tig0018533:91143-91162 Msa1367690:three_prime_UTR 40.0%
! CACTTGAGTGACTTTGAGTT+TGG - tig0018533:91222-91241 None:intergenic 40.0%
CAAACTCAAAGTCACTCAAG+TGG + tig0018533:91220-91239 Msa1367690:three_prime_UTR 40.0%
GCACTCAAAAGATGGAACAT+GGG - tig0018533:91248-91267 None:intergenic 40.0%
CCACTAGTAATAGGTACATG+TGG - tig0018533:91304-91323 None:intergenic 40.0%
CCACATGTACCTATTACTAG+TGG + tig0018533:91301-91320 Msa1367690:three_prime_UTR 40.0%
GGAGTATGTTGCAATGCAAT+GGG + tig0018533:91323-91342 Msa1367690:three_prime_UTR 40.0%
GAGTATGTTGCAATGCAATG+GGG + tig0018533:91324-91343 Msa1367690:three_prime_UTR 40.0%
! GTTGTTATAGTGGAATGGCG+GGG + tig0018533:84857-84876 Msa1367690:intron 45.0%
! TTGTTATAGTGGAATGGCGG+GGG + tig0018533:84858-84877 Msa1367690:intron 45.0%
GGGGGAAGAAGATGGAATAA+TGG + tig0018533:84877-84896 Msa1367690:CDS 45.0%
!! GATGGAATAATGGGTGGCTT+AGG + tig0018533:84887-84906 Msa1367690:CDS 45.0%
AGAGAAGGAGAAGTTGAGGA+AGG + tig0018533:85100-85119 Msa1367690:CDS 45.0%
!! TGCTTGGTTGGTCTCTTAAC+AGG + tig0018533:85178-85197 Msa1367690:CDS 45.0%
! TTTGTTGTGGGATGGGATTC+CGG + tig0018533:85343-85362 Msa1367690:CDS 45.0%
!! ATACTTGTTCCCGCTTTTGG+AGG + tig0018533:85422-85441 Msa1367690:CDS 45.0%
ACAAGAAGACCTCCAAAAGC+GGG - tig0018533:85434-85453 None:intergenic 45.0%
! CTTTAAGAAAGGGCGGGAAT+TGG - tig0018533:85483-85502 None:intergenic 45.0%
CAATTCCCGCCCTTTCTTAA+AGG + tig0018533:85481-85500 Msa1367690:CDS 45.0%
GAATTTCCAATGTCGACGCT+GGG - tig0018533:85560-85579 None:intergenic 45.0%
GGAAGCAATCCATTTGGCAA+TGG - tig0018533:85582-85601 None:intergenic 45.0%
AGGAGTGGAAGCAATCCATT+TGG - tig0018533:85588-85607 None:intergenic 45.0%
AGTTTGGCGGAAGTGAAAAG+AGG - tig0018533:85608-85627 None:intergenic 45.0%
AGCGAAGAAACAACCAGCAA+CGG - tig0018533:85687-85706 None:intergenic 45.0%
!! GTCATTTCTGAGATTGGCCT+CGG + tig0018533:85803-85822 Msa1367690:CDS 45.0%
! TAGTCTGGAACTTGAAAGGC+AGG - tig0018533:85836-85855 None:intergenic 45.0%
! GTCGTAGTCTGGAACTTGAA+AGG - tig0018533:85840-85859 None:intergenic 45.0%
TCGGTAAGTTACTTACCAGC+AGG - tig0018533:85872-85891 None:intergenic 45.0%
GCTCCCGCTGTATTTATTGT+TGG + tig0018533:85966-85985 Msa1367690:CDS 45.0%
GAATCTCGACCCTTTGTCAA+AGG + tig0018533:86186-86205 Msa1367690:intron 45.0%
GTGGAGAGACCTTTGACAAA+GGG - tig0018533:86198-86217 None:intergenic 45.0%
CTTTGTCAAAGGTCTCTCCA+CGG + tig0018533:86197-86216 Msa1367690:intron 45.0%
TAGCTGAAGCAATAGATCCG+TGG - tig0018533:86217-86236 None:intergenic 45.0%
GCACCACCAATAAAGAGAGA+TGG - tig0018533:86306-86325 None:intergenic 45.0%
!! CTCTTTATTGGTGGTGCAAC+TGG + tig0018533:86309-86328 Msa1367690:CDS 45.0%
!! TATTGGTGGTGCAACTGGTA+TGG + tig0018533:86314-86333 Msa1367690:CDS 45.0%
ATGCAACTTCCAACAGAGAG+AGG - tig0018533:86392-86411 None:intergenic 45.0%
GTTGCATCACCACAAGCTTA+TGG + tig0018533:86405-86424 Msa1367690:CDS 45.0%
! ACAAATGAGCCTTTTCCTGG+AGG + tig0018533:86554-86573 Msa1367690:intron 45.0%
TTGCCAGTTGTCGTGAAAGT+CGG - tig0018533:87176-87195 None:intergenic 45.0%
TCAGCCAAAGCTTAACTGGA+AGG + tig0018533:87230-87249 Msa1367690:intron 45.0%
GACACCTTCCAGTTAAGCTT+TGG - tig0018533:87237-87256 None:intergenic 45.0%
TATGGTCCAAGCAACTTCCT+TGG + tig0018533:87510-87529 Msa1367690:intron 45.0%
TTTGAACTCTGAACTGGCCA+AGG - tig0018533:87530-87549 None:intergenic 45.0%
!! GTTCCTTTTGCAGGTTGGAA+TGG + tig0018533:87780-87799 Msa1367690:intron 45.0%
GAACTGCAGTAAGTGGTACT+TGG - tig0018533:87828-87847 None:intergenic 45.0%
AGAAGCAGAACTGCAGTAAG+TGG - tig0018533:87835-87854 None:intergenic 45.0%
TTACCACTACTTGGAGCAGT+AGG + tig0018533:87886-87905 Msa1367690:CDS 45.0%
ACTGGTAATACCTCTGCTGA+AGG + tig0018533:88039-88058 Msa1367690:CDS 45.0%
ATATGACACACCTTCAGCAG+AGG - tig0018533:88052-88071 None:intergenic 45.0%
GGAGAGTTCAAGTAGTGTAG+AGG + tig0018533:88092-88111 Msa1367690:intron 45.0%
GTCTGGAAGCGAAAATCGAA+AGG + tig0018533:88332-88351 Msa1367690:CDS 45.0%
! GTTGGTTTCCAATCAATGCC+AGG - tig0018533:88538-88557 None:intergenic 45.0%
ACACACTTAAAAGGGCCTTG+TGG + tig0018533:88636-88655 Msa1367690:intron 45.0%
GAATCGCTCATGGCATATCT+TGG + tig0018533:88713-88732 Msa1367690:intron 45.0%
TCGAGTCTTGAATTCGGATG+TGG + tig0018533:89285-89304 Msa1367690:intron 45.0%
! TGAATTCGGATGTGGATTGC+AGG + tig0018533:89293-89312 Msa1367690:intron 45.0%
CACGTGGCACTCTGTTAATT+TGG - tig0018533:89594-89613 None:intergenic 45.0%
! CAAATTAACAGAGTGCCACG+TGG + tig0018533:89592-89611 Msa1367690:intron 45.0%
CATGATATTACTGGACCACG+TGG - tig0018533:90318-90337 None:intergenic 45.0%
TCCAGTAATATCATGCCACG+TGG + tig0018533:89615-89634 Msa1367690:intron 45.0%
!! CGTAGCTTAAGTTGGGTTTG+TGG - tig0018533:90064-90083 None:intergenic 45.0%
TCCAGTAATATCATGCCACG+TGG - tig0018533:89615-89634 None:intergenic 45.0%
CATGATATTACTGGACCACG+TGG + tig0018533:90318-90337 Msa1367690:intron 45.0%
! AAAATTAACGGAGTGCCACG+TGG - tig0018533:90336-90355 None:intergenic 45.0%
GAATGGTGTAAGAAGAGTGG+AGG + tig0018533:90795-90814 Msa1367690:intron 45.0%
AGCTGATGTTCCAAGTTAGG+AGG + tig0018533:90958-90977 Msa1367690:exon 45.0%
TGATGTTCCAAGTTAGGAGG+AGG + tig0018533:90961-90980 Msa1367690:exon 45.0%
GATGTTCCAAGTTAGGAGGA+GGG + tig0018533:90962-90981 Msa1367690:exon 45.0%
CGTTCTCTGTCTTACATCAG+AGG - tig0018533:91142-91161 None:intergenic 45.0%
CGCACTCAAAAGATGGAACA+TGG - tig0018533:91249-91268 None:intergenic 45.0%
TCACACTCGCACTCAAAAGA+TGG - tig0018533:91256-91275 None:intergenic 45.0%
! GGGAGTATGTTGCAATGCAA+TGG + tig0018533:91322-91341 Msa1367690:three_prime_UTR 45.0%
!!! CTTTTATTTATTTATTTATT+TGG + tig0018533:86442-86461 Msa1367690:intron 5.0%
!! TAAAAAAAAATCAAAATTAA+CGG - tig0018533:90348-90367 None:intergenic 5.0%
!!! ATAAAATTATAATACATTTT+GGG - tig0018533:91360-91379 None:intergenic 5.0%
!!! TATAAAATTATAATACATTT+TGG - tig0018533:91361-91380 None:intergenic 5.0%
! TGTTATAGTGGAATGGCGGG+GGG + tig0018533:84859-84878 Msa1367690:intron 50.0%
AATGGGTGGCTTAGGATGTG+CGG + tig0018533:84895-84914 Msa1367690:CDS 50.0%
TTAGGATGTGCGGTTGGAGT+CGG + tig0018533:84905-84924 Msa1367690:CDS 50.0%
! AACCATGAGGCACCTCTATC+CGG - tig0018533:85365-85384 None:intergenic 50.0%
GAAAGGGCGGGAATTGGAAT+TGG - tig0018533:85477-85496 None:intergenic 50.0%
TGGTAATTCCTTGGGTCCTG+AGG + tig0018533:85532-85551 Msa1367690:CDS 50.0%
GGTAATTCCTTGGGTCCTGA+GGG + tig0018533:85533-85552 Msa1367690:CDS 50.0%
GGAATTTCCAATGTCGACGC+TGG - tig0018533:85561-85580 None:intergenic 50.0%
ATTGAAACCAGCAGAGAGGC+CGG - tig0018533:85660-85679 None:intergenic 50.0%
! CAGCATTGAAACCAGCAGAG+AGG - tig0018533:85664-85683 None:intergenic 50.0%
TCGCTGTTGAGTCTGTCTTG+TGG + tig0018533:85702-85721 Msa1367690:CDS 50.0%
GGAGAACGAAAGTCGTAGTC+TGG - tig0018533:85851-85870 None:intergenic 50.0%
TACGACTTTCGTTCTCCTGC+TGG + tig0018533:85854-85873 Msa1367690:CDS 50.0%
GACAATCTTCACAAGGCCAC+TGG + tig0018533:86054-86073 Msa1367690:CDS 50.0%
! AGAAGCTTTTGGCATGCCAG+TGG - tig0018533:86073-86092 None:intergenic 50.0%
GCTTCTTTCCCTATACTGGG+AGG + tig0018533:86087-86106 Msa1367690:CDS 50.0%
CGTGGAGAGACCTTTGACAA+AGG - tig0018533:86199-86218 None:intergenic 50.0%
ACTTCTCTCTGTCGTGCTTC+CGG + tig0018533:86258-86277 Msa1367690:CDS 50.0%
!! TGTCGTGCTTCCGGATTAGT+AGG + tig0018533:86267-86286 Msa1367690:CDS 50.0%
GCCCCATCTCTCTTTATTGG+TGG + tig0018533:86300-86319 Msa1367690:CDS 50.0%
GGTGCAACTGGTATGGCTTA+TGG + tig0018533:86321-86340 Msa1367690:CDS 50.0%
ATCACCACAAGCTTATGGGC+TGG + tig0018533:86410-86429 Msa1367690:CDS 50.0%
! CAACCGACTTTCACGACAAC+TGG + tig0018533:87170-87189 Msa1367690:intron 50.0%
AACTGGCCAAGGAAGTTGCT+TGG - tig0018533:87519-87538 None:intergenic 50.0%
CAGCGTATGGTTGTCTATGC+TGG + tig0018533:87585-87604 Msa1367690:intron 50.0%
TTCAGGAAAAGAAGCTGGCG+TGG + tig0018533:87738-87757 Msa1367690:intron 50.0%
CAGCCATTCCAACCTGCAAA+AGG - tig0018533:87786-87805 None:intergenic 50.0%
AAGCCTACTGCTCCAAGTAG+TGG - tig0018533:87892-87911 None:intergenic 50.0%
GAGCAGTAGGCTTGTCTTCA+TGG + tig0018533:87899-87918 Msa1367690:CDS 50.0%
CTTGGAGACATTCGAGCGTT+TGG + tig0018533:88297-88316 Msa1367690:CDS 50.0%
TCGCTCATGGCATATCTTGG+TGG + tig0018533:88716-88735 Msa1367690:intron 50.0%
CGCTCATGGCATATCTTGGT+GGG + tig0018533:88717-88736 Msa1367690:intron 50.0%
GCTCATGGCATATCTTGGTG+GGG + tig0018533:88718-88737 Msa1367690:intron 50.0%
TGGTTTAGGTCCCTGCACTT+TGG + tig0018533:89520-89539 Msa1367690:intron 50.0%
GCCACGTGGCATGATATTAC+TGG - tig0018533:90309-90328 None:intergenic 50.0%
CTTGCAGAAAGGGGAAGAAG+TGG + tig0018533:89786-89805 Msa1367690:intron 50.0%
TCACCATGCTGCTGCATTTC+TGG + tig0018533:89953-89972 Msa1367690:intron 50.0%
CACCATGCTGCTGCATTTCT+GGG + tig0018533:89954-89973 Msa1367690:intron 50.0%
TTCCCAGAAATGCAGCAGCA+TGG - tig0018533:89959-89978 None:intergenic 50.0%
GCCACGTGGCATGATATTAC+TGG + tig0018533:90309-90328 Msa1367690:intron 50.0%
!! AACGGTGTCATTAGATGGGG+TGG + tig0018533:90717-90736 Msa1367690:intron 50.0%
!! ACGGTGTCATTAGATGGGGT+GGG + tig0018533:90718-90737 Msa1367690:intron 50.0%
TCAGCTAAGGGACTGTATCG+TGG - tig0018533:90944-90963 None:intergenic 50.0%
TGGGATGGGATTCCGGATAG+AGG + tig0018533:85350-85369 Msa1367690:CDS 55.0%
!! TTCCGGATAGAGGTGCCTCA+TGG + tig0018533:85360-85379 Msa1367690:CDS 55.0%
AGGCGCTTCTCTCAACCATG+AGG - tig0018533:85378-85397 None:intergenic 55.0%
GGCGGAAGTGAAAAGAGGAG+TGG - tig0018533:85603-85622 None:intergenic 55.0%
GGTTTCAATGCTGCCGTTGC+TGG + tig0018533:85671-85690 Msa1367690:CDS 55.0%
!! CGTGCTTCCGGATTAGTAGG+AGG + tig0018533:86270-86289 Msa1367690:CDS 55.0%
CGTACCAGCCCATAAGCTTG+TGG - tig0018533:86417-86436 None:intergenic 55.0%
GAAAAGAAGCTGGCGTGGCA+CGG + tig0018533:87743-87762 Msa1367690:CDS 55.0%
TGATACTGTCGGGGTCCAGT+AGG - tig0018533:89008-89027 None:intergenic 55.0%
! TTCGGATGTGGATTGCAGGC+AGG + tig0018533:89297-89316 Msa1367690:intron 55.0%
! TCGGATGTGGATTGCAGGCA+GGG + tig0018533:89298-89317 Msa1367690:intron 55.0%
CCACAAACGCAGAAACGCGA+CGG - tig0018533:90132-90151 None:intergenic 55.0%
! GTGTCATTAGATGGGGTGGG+TGG + tig0018533:90721-90740 Msa1367690:intron 55.0%
TTCCAAGTTAGGAGGAGGGC+AGG + tig0018533:90966-90985 Msa1367690:three_prime_UTR 55.0%
TTCCTGCCCTCCTCCTAACT+TGG - tig0018533:90971-90990 None:intergenic 55.0%
AAGTTAGGAGGAGGGCAGGA+AGG + tig0018533:90970-90989 Msa1367690:three_prime_UTR 55.0%
! GAATGGCGGGGGGAAGAAGA+TGG + tig0018533:84869-84888 Msa1367690:CDS 60.0%
GGTGGCTTAGGATGTGCGGT+TGG + tig0018533:84899-84918 Msa1367690:CDS 60.0%
TCGGAGGGGAAGGAGTTTGG+CGG - tig0018533:85621-85640 None:intergenic 60.0%
AGCTCGGAGGGGAAGGAGTT+TGG - tig0018533:85624-85643 None:intergenic 60.0%
AGCAGATCCAGCAGCTCGGA+GGG - tig0018533:85636-85655 None:intergenic 60.0%
GAAAGGCAGGTTCAGAGCCG+AGG - tig0018533:85823-85842 None:intergenic 60.0%
GGAATGGCTGCGACTCTTGC+AGG + tig0018533:87796-87815 Msa1367690:intron 60.0%
TCGGGGTCCAGTAGGCCAAT+TGG - tig0018533:89000-89019 None:intergenic 60.0%
CCGTCGCGTTTCTGCGTTTG+TGG + tig0018533:90129-90148 Msa1367690:intron 60.0%
ATGTCGACGCTGGGACCCTC+AGG - tig0018533:85551-85570 None:intergenic 65.0%
!! GAGGGTCCCAGCGTCGACAT+TGG + tig0018533:85551-85570 Msa1367690:CDS 65.0%
ATCCAGCAGCTCGGAGGGGA+AGG - tig0018533:85631-85650 None:intergenic 65.0%
GCAGATCCAGCAGCTCGGAG+GGG - tig0018533:85635-85654 None:intergenic 65.0%
CAGCAGATCCAGCAGCTCGG+AGG - tig0018533:85637-85656 None:intergenic 65.0%
CGGCAGCAGATCCAGCAGCT+CGG - tig0018533:85640-85659 None:intergenic 65.0%
CGAGCTGCTGGATCTGCTGC+CGG + tig0018533:85638-85657 Msa1367690:CDS 65.0%
GCTGGGACCCTCAGGACCCA+AGG - tig0018533:85543-85562 None:intergenic 70.0%
CTCCTTCCCCTCCGAGCTGC+TGG + tig0018533:85626-85645 Msa1367690:CDS 70.0%
TCTGCTGCCGGCCTCTCTGC+TGG + tig0018533:85650-85669 Msa1367690:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0018533 gene 84824 91417 84824 ID=Msa1367690;Name=Msa1367690
tig0018533 mRNA 84824 91417 84824 ID=Msa1367690-mRNA-1;Parent=Msa1367690;Name=Msa1367690-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.36|0.25|1|0.45|0.25|12|454|713
tig0018533 exon 84824 84827 84824 ID=Msa1367690-mRNA-1:exon:76;Parent=Msa1367690-mRNA-1
tig0018533 exon 84867 84947 84867 ID=Msa1367690-mRNA-1:exon:77;Parent=Msa1367690-mRNA-1
tig0018533 exon 84981 85228 84981 ID=Msa1367690-mRNA-1:exon:78;Parent=Msa1367690-mRNA-1
tig0018533 exon 85326 85875 85326 ID=Msa1367690-mRNA-1:exon:79;Parent=Msa1367690-mRNA-1
tig0018533 exon 85965 86159 85965 ID=Msa1367690-mRNA-1:exon:80;Parent=Msa1367690-mRNA-1
tig0018533 exon 86208 86431 86208 ID=Msa1367690-mRNA-1:exon:81;Parent=Msa1367690-mRNA-1
tig0018533 exon 87588 87658 87588 ID=Msa1367690-mRNA-1:exon:82;Parent=Msa1367690-mRNA-1
tig0018533 exon 87743 87792 87743 ID=Msa1367690-mRNA-1:exon:83;Parent=Msa1367690-mRNA-1
tig0018533 exon 87818 88060 87818 ID=Msa1367690-mRNA-1:exon:84;Parent=Msa1367690-mRNA-1
tig0018533 exon 88112 88353 88112 ID=Msa1367690-mRNA-1:exon:85;Parent=Msa1367690-mRNA-1
tig0018533 exon 88838 89040 88838 ID=Msa1367690-mRNA-1:exon:86;Parent=Msa1367690-mRNA-1
tig0018533 exon 90933 91417 90933 ID=Msa1367690-mRNA-1:exon:87;Parent=Msa1367690-mRNA-1
tig0018533 CDS 84824 84827 84824 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 CDS 84867 84947 84867 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 CDS 84981 85228 84981 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 CDS 85326 85875 85326 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 CDS 85965 86159 85965 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 CDS 86208 86431 86208 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 CDS 87588 87658 87588 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 CDS 87743 87792 87743 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 CDS 87818 88060 87818 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 CDS 88112 88353 88112 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 CDS 88838 89040 88838 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 CDS 90933 90963 90933 ID=Msa1367690-mRNA-1:cds;Parent=Msa1367690-mRNA-1
tig0018533 three_prime_UTR 90964 91417 90964 ID=Msa1367690-mRNA-1:three_prime_utr;Parent=Msa1367690-mRNA-1
Gene Sequence

>Msa1367690

ATGATGGAATGGCGGGGGGAAGAAGATGGAATAATGGGTGGCTTAGGATGTGCGGTTGGAGTCGGAGTGAGAGTTCTTCAACCAACTGCAATAACAGTAACACGTTCGGGATTCCTTTCTTCTTCTTCCTCAAACAAGAATTACGCCAACTTCACAACTACTAATGGTCGGTGTCGTCGTGTGCCGCTTCACAATAGCAAAGATAGAGAAGGAGAAGTTGAGGAAGGAGTTTCGTCTTCTTCTTCTTCTGAATGGATTCGTAATTCGGGAATAATATCTTCATGCTTGGTTGGTCTCTTAACAGGTGTTGCAGTCGTGCTCTTCAACAATGTTGTTCATGAAATTCGTGATTTGTTGTGGGATGGGATTCCGGATAGAGGTGCCTCATGGTTGAGAGAAGCGCCTATTCAAGAAACATGGAAAAGGGTAATACTTGTTCCCGCTTTTGGAGGTCTTCTTGTTTCTCTTCTCAACCTTCTTTCCAATTCCAATTCCCGCCCTTTCTTAAAGGCTATTGCAGCTTCTATTACTTTAGGCACTGGTAATTCCTTGGGTCCTGAGGGTCCCAGCGTCGACATTGGAAATTCCATTGCCAAATGGATTGCTTCCACTCCTCTTTTCACTTCCGCCAAACTCCTTCCCCTCCGAGCTGCTGGATCTGCTGCCGGCCTCTCTGCTGGTTTCAATGCTGCCGTTGCTGGTTGTTTCTTCGCTGTTGAGTCTGTCTTGTGGCCTTCTGATTCTGATTCTTCTAATTTATCCCTTACCAATACTACTTCCACTGTTATTCTAAGTGCTGTCATTGCTTCTGTCATTTCTGAGATTGGCCTCGGCTCTGAACCTGCCTTTCAAGTTCCAGACTACGACTTTCGTTCTCCTGCTGAGCTCCCGCTGTATTTATTGTTGGGTATCTTATGTGGCCTCGTTTCATTGACCCTATCTTGGTCTACATCATATATGCTCACTTTATTTGACAATCTTCACAAGGCCACTGGCATGCCAAAAGCTTCTTTCCCTATACTGGGAGGTTTATCTGTAGGCCTCATAGCATTGCTATATCCTGAAATCCTCTATTGGGGTCTCTCCACGGATCTATTGCTTCAGCTAATAGCGGTCAAGATAGTTACAACTTCTCTCTGTCGTGCTTCCGGATTAGTAGGAGGCTATTATGCCCCATCTCTCTTTATTGGTGGTGCAACTGGTATGGCTTATGGAAAATTAATTGCTTTCGCTGTTGCTCACTCTAATCCTGTGATTAACCTCTCTCTGTTGGAAGTTGCATCACCACAAGCTTATGGGCTGCGTATGGTTGTCTATGCTGGAATGCTGCTACACTTTGATTTGTTGGGTCAGAATAAGACTTGTAAGAATATGAAAAGAAGCTGGCGTGGCACGGATGATCATATCAAAGTTCCTTTTGCAGGTGTTTGCCAAGTACCACTTACTGCAGTTCTGCTTCTGTTTGAATTGACACAGGACTATCGGATTGTTTTACCACTACTTGGAGCAGTAGGCTTGTCTTCATGGATTTCATCTGTACAGACAAAGAGAGGTGATGAAAGGGATAAAGAAAAGCTGAAGATACAAAACTCAAATTCTTCTCCGTTTCCAGAAATATCTTCTTGTAGATCAATTGAGTTATCTACTGGTAATACCTCTGCTGAAGAGGATAATAATGATGAAACAATGAATTATGTAAGGAGAACATTAGTTTCGGAAGCCATGAAGACAAGATTTGTGACGGTTTCAATGTGCACACCGCTTACTAAAGTAATAGATCTCATGCTCGCAGAGAAACAGTCTTGTGCAGTAATTGTTGATACTGATGATACTTTGATTGGTTTATTGACACTTGGAGACATTCGAGCGTTTGGAAAATCGGCAAAGTCTGGAAGCGAAAATCGAAAGGAGATTTTAGTTTCTGAATTATGTGTTTTAAATGGAGGAATATGTAGTGTACCATGTACAGTTACTCCTGATATGGAACTTTATCATGCTCAAATGATCATGAAGGAACATGGAGTGAATCAAGTTCCAGTTGTGAAGAATATCTATGAAAGAACTTATCCAATTGGCCTACTGGACCCCGACAGTATCAGTTTAACATACAGTGCTTTGGCCACGATACAGTCCCTTAGCTGA
Protein sequence

>Msa1367690

MMEWRGEEDGIMGGLGCAVGVGVRVLQPTAITVTRSGFLSSSSSNKNYANFTTTNGRCRRVPLHNSKDREGEVEEGVSSSSSSEWIRNSGIISSCLVGLLTGVAVVLFNNVVHEIRDLLWDGIPDRGASWLREAPIQETWKRVILVPAFGGLLVSLLNLLSNSNSRPFLKAIAASITLGTGNSLGPEGPSVDIGNSIAKWIASTPLFTSAKLLPLRAAGSAAGLSAGFNAAVAGCFFAVESVLWPSDSDSSNLSLTNTTSTVILSAVIASVISEIGLGSEPAFQVPDYDFRSPAELPLYLLLGILCGLVSLTLSWSTSYMLTLFDNLHKATGMPKASFPILGGLSVGLIALLYPEILYWGLSTDLLLQLIAVKIVTTSLCRASGLVGGYYAPSLFIGGATGMAYGKLIAFAVAHSNPVINLSLLEVASPQAYGLRMVVYAGMLLHFDLLGQNKTCKNMKRSWRGTDDHIKVPFAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWISSVQTKRGDERDKEKLKIQNSNSSPFPEISSCRSIELSTGNTSAEEDNNDETMNYVRRTLVSEAMKTRFVTVSMCTPLTKVIDLMLAEKQSCAVIVDTDDTLIGLLTLGDIRAFGKSAKSGSENRKEILVSELCVLNGGICSVPCTVTPDMELYHAQMIMKEHGVNQVPVVKNIYERTYPIGLLDPDSISLTYSALATIQSLS*