AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1303620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303620 MtrunA17_Chr4g0071771 99.130 115 1 0 1 115 1 115 2.59e-79 228
Msa1303620 MtrunA17_Chr4g0071761 80.870 115 22 0 1 115 1 115 9.64e-65 191
Msa1303620 MtrunA17_Chr4g0005161 62.609 115 43 0 1 115 1 115 5.17e-48 149
Msa1303620 MtrunA17_Chr7g0238011 51.786 112 54 0 1 112 1 112 5.19e-34 114
Msa1303620 MtrunA17_Chr7g0243451 45.631 103 56 0 1 103 1 103 8.29e-28 98.2
Msa1303620 MtrunA17_Chr4g0005151 45.631 103 56 0 1 103 1 103 2.09e-26 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303620 AT5G57170.1 86.087 115 16 0 1 115 1 115 4.24e-67 197
Msa1303620 AT5G57170.2 85.849 106 15 0 1 106 1 106 5.32e-60 180
Msa1303620 AT5G01650.1 61.739 115 44 0 1 115 1 115 1.92e-48 150
Msa1303620 AT5G01650.4 61.321 106 41 0 1 106 1 106 5.30e-43 137
Msa1303620 AT5G01650.2 61.538 104 40 0 1 104 1 104 8.09e-43 137
Msa1303620 AT5G01650.3 61.538 104 40 0 1 104 1 104 8.09e-43 137
Msa1303620 AT3G51660.1 41.176 102 60 0 1 102 1 102 4.00e-23 86.7

Find 39 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATGGACTCAACGGATTC+AGG 0.261196 8_3:-66802397 None:intergenic
CTGATCAGTCTTTACCATAC+TGG 0.289389 8_3:+66803799 Msa1303620:exon
CTTGAGAAACTTCCCCAGTA+TGG 0.330840 8_3:-66803813 None:intergenic
TTATTGCTTCCGACATTCTC+AGG 0.332794 8_3:+66802338 Msa1303620:CDS
CTGATATCAATTGGCGGACT+TGG 0.336187 8_3:+66802679 Msa1303620:CDS
GCGTTGTCCTTGAGTCCTTC+AGG 0.356398 8_3:-66802271 None:intergenic
ATAAAATTTGATGTAGAATC+TGG 0.367314 8_3:-66802773 None:intergenic
TCACACACAAATTCGTGTTT+TGG 0.373728 8_3:-66802221 None:intergenic
TCCTTGAGTCCTTCAGGATA+AGG 0.385107 8_3:-66802265 None:intergenic
CAATGTATAGTTTAGTTTGA+AGG 0.396267 8_3:-66802744 None:intergenic
GAAGCAATAACAGGATCAAC+GGG 0.421924 8_3:-66802325 None:intergenic
GGTGGAGTGCCTATTGCATT+TGG 0.425683 8_3:+66802625 Msa1303620:CDS
TCATCAATTTATATAGTTTG+TGG 0.431299 8_3:+66803969 Msa1303620:three_prime_UTR
AGAATGTCGGAAGCAATAAC+AGG 0.455680 8_3:-66802334 None:intergenic
ACTGAAGAGCCGGCTGCCTA+TGG 0.457767 8_3:+66802652 Msa1303620:CDS
TCAGTCCCACCAAATGCAAT+AGG 0.463249 8_3:-66802634 None:intergenic
TGATCAGTCTTTACCATACT+GGG 0.467873 8_3:+66803800 Msa1303620:exon
TATGGAGAGCTGATATCAAT+TGG 0.477027 8_3:+66802670 Msa1303620:CDS
AACAGGATCAACGGGGATGT+TGG 0.504476 8_3:-66802317 None:intergenic
GGAGTGCCTATTGCATTTGG+TGG 0.518848 8_3:+66802628 Msa1303620:CDS
AAATATATTTCATCTTTCTG+TGG 0.538504 8_3:+66803840 Msa1303620:three_prime_UTR
AATTGATATCAGCTCTCCAT+AGG 0.553233 8_3:-66802668 None:intergenic
GAGTGCCTATTGCATTTGGT+GGG 0.560113 8_3:+66802629 Msa1303620:CDS
CAACGGGGATGTTGGTGAAG+AGG 0.560879 8_3:-66802309 None:intergenic
TATTGCTTCCGACATTCTCA+GGG 0.566512 8_3:+66802339 Msa1303620:CDS
ACCTTATCCTGAAGGACTCA+AGG 0.571610 8_3:+66802264 Msa1303620:five_prime_UTR
GGAGAGCTGATATCAATTGG+CGG 0.574098 8_3:+66802673 Msa1303620:CDS
TCAAAATGACACAGAACAGA+AGG 0.576873 8_3:-66803934 None:intergenic
ATCAGCTCTCCATAGGCAGC+CGG 0.584190 8_3:-66802661 None:intergenic
GGAAGCAATAACAGGATCAA+CGG 0.590071 8_3:-66802326 None:intergenic
ATTTGGTGGGACTGAAGAGC+CGG 0.598688 8_3:+66802642 Msa1303620:CDS
TATGGTAAAGACTGATCAGA+AGG 0.598875 8_3:-66803795 None:intergenic
CATACTGGGGAAGTTTCTCA+AGG 0.602094 8_3:+66803814 Msa1303620:three_prime_UTR
GGTGGCATCCCTGAGAATGT+CGG 0.604831 8_3:-66802347 None:intergenic
AGACAAACACCTTATCCTGA+AGG 0.609937 8_3:+66802256 Msa1303620:five_prime_UTR
GTTGGTGAAGAGGTTCAAAG+TGG 0.658271 8_3:-66802299 None:intergenic
GATCAGTCTTTACCATACTG+GGG 0.672682 8_3:+66803801 Msa1303620:exon
TTGGTGAAGAGGTTCAAAGT+GGG 0.677235 8_3:-66802298 None:intergenic
AAGCAATAACAGGATCAACG+GGG 0.796705 8_3:-66802324 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACAGTTTCAATATAATA+TGG - chr8_3:66802943-66802962 None:intergenic 15.0%
!! TATTAAATTATTACTGTTCT+GGG + chr8_3:66803017-66803036 Msa1303620:intron 15.0%
!!! AAAGATGAATGAATATTTTA+AGG + chr8_3:66803278-66803297 Msa1303620:intron 15.0%
!! TATCTTATTACAAAAGAATA+GGG - chr8_3:66803461-66803480 None:intergenic 15.0%
!! ATATCTTATTACAAAAGAAT+AGG - chr8_3:66803462-66803481 None:intergenic 15.0%
!! TACATTTGATATATGAAAAA+TGG + chr8_3:66803901-66803920 Msa1303620:three_prime_UTR 15.0%
!! ACATTTGATATATGAAAAAT+GGG + chr8_3:66803902-66803921 Msa1303620:three_prime_UTR 15.0%
!! TAAACAGTTTCAATATAATA+TGG - chr8_3:66802943-66802962 None:intergenic 15.0%
!! TATTAAATTATTACTGTTCT+GGG + chr8_3:66803017-66803036 Msa1303620:intron 15.0%
!!! AAAGATGAATGAATATTTTA+AGG + chr8_3:66803278-66803297 Msa1303620:intron 15.0%
!! TATCTTATTACAAAAGAATA+GGG - chr8_3:66803461-66803480 None:intergenic 15.0%
!! ATATCTTATTACAAAAGAAT+AGG - chr8_3:66803462-66803481 None:intergenic 15.0%
!! TACATTTGATATATGAAAAA+TGG + chr8_3:66803901-66803920 Msa1303620:three_prime_UTR 15.0%
!! ACATTTGATATATGAAAAAT+GGG + chr8_3:66803902-66803921 Msa1303620:three_prime_UTR 15.0%
!! AATTTAATCAAACATTTGGT+GGG - chr8_3:66802451-66802470 None:intergenic 20.0%
!! TAATTTAATCAAACATTTGG+TGG - chr8_3:66802452-66802471 None:intergenic 20.0%
!! GAGTAATTTAATCAAACATT+TGG - chr8_3:66802455-66802474 None:intergenic 20.0%
!! ATAAAATTTGATGTAGAATC+TGG - chr8_3:66802776-66802795 None:intergenic 20.0%
!! GTATTAAATTATTACTGTTC+TGG + chr8_3:66803016-66803035 Msa1303620:intron 20.0%
!! ATTAAATTATTACTGTTCTG+GGG + chr8_3:66803018-66803037 Msa1303620:intron 20.0%
!! TAAAATAACAGTATCCATTA+CGG - chr8_3:66803362-66803381 None:intergenic 20.0%
!!! GGATACTGTTATTTTAAAAT+TGG + chr8_3:66803366-66803385 Msa1303620:intron 20.0%
!!! AACTGATTTAACAAAATGAT+GGG - chr8_3:66803490-66803509 None:intergenic 20.0%
!!! ATTTTTGTTCTTTTACTTCA+TGG + chr8_3:66803722-66803741 Msa1303620:intron 20.0%
!! AAATATATTTCATCTTTCTG+TGG + chr8_3:66803840-66803859 Msa1303620:three_prime_UTR 20.0%
!! TCATCAATTTATATAGTTTG+TGG + chr8_3:66803969-66803988 Msa1303620:three_prime_UTR 20.0%
!! AATTTAATCAAACATTTGGT+GGG - chr8_3:66802451-66802470 None:intergenic 20.0%
!! TAATTTAATCAAACATTTGG+TGG - chr8_3:66802452-66802471 None:intergenic 20.0%
!! GAGTAATTTAATCAAACATT+TGG - chr8_3:66802455-66802474 None:intergenic 20.0%
!! ATAAAATTTGATGTAGAATC+TGG - chr8_3:66802776-66802795 None:intergenic 20.0%
!! GTATTAAATTATTACTGTTC+TGG + chr8_3:66803016-66803035 Msa1303620:intron 20.0%
!! ATTAAATTATTACTGTTCTG+GGG + chr8_3:66803018-66803037 Msa1303620:intron 20.0%
!! TAAAATAACAGTATCCATTA+CGG - chr8_3:66803362-66803381 None:intergenic 20.0%
!!! GGATACTGTTATTTTAAAAT+TGG + chr8_3:66803366-66803385 Msa1303620:intron 20.0%
!!! AACTGATTTAACAAAATGAT+GGG - chr8_3:66803490-66803509 None:intergenic 20.0%
!!! ATTTTTGTTCTTTTACTTCA+TGG + chr8_3:66803722-66803741 Msa1303620:intron 20.0%
!! AAATATATTTCATCTTTCTG+TGG + chr8_3:66803840-66803859 Msa1303620:three_prime_UTR 20.0%
!! TCATCAATTTATATAGTTTG+TGG + chr8_3:66803969-66803988 Msa1303620:three_prime_UTR 20.0%
! AAAGTTGTTGCAAAAATCAT+CGG + chr8_3:66802370-66802389 Msa1303620:CDS 25.0%
!! TATGTGATGATTTTGTTGAA+TGG + chr8_3:66802604-66802623 Msa1303620:CDS 25.0%
!!! CAATGTATAGTTTAGTTTGA+AGG - chr8_3:66802747-66802766 None:intergenic 25.0%
! AAGAAATCGTAAATTTACCT+CGG - chr8_3:66802803-66802822 None:intergenic 25.0%
!! ATACATGAAATAGAGTACTA+TGG - chr8_3:66803163-66803182 None:intergenic 25.0%
! GTATTGTTCTTATAAAGTCT+TGG + chr8_3:66803179-66803198 Msa1303620:intron 25.0%
! AAATATTCATTCATCTTTCG+AGG - chr8_3:66803276-66803295 None:intergenic 25.0%
!! TTTAGCTTATAAAACCGTAA+TGG + chr8_3:66803345-66803364 Msa1303620:intron 25.0%
!! GAACTGATTTAACAAAATGA+TGG - chr8_3:66803491-66803510 None:intergenic 25.0%
! AAAGTTGTTGCAAAAATCAT+CGG + chr8_3:66802370-66802389 Msa1303620:CDS 25.0%
!! TATGTGATGATTTTGTTGAA+TGG + chr8_3:66802604-66802623 Msa1303620:CDS 25.0%
!!! CAATGTATAGTTTAGTTTGA+AGG - chr8_3:66802747-66802766 None:intergenic 25.0%
! AAGAAATCGTAAATTTACCT+CGG - chr8_3:66802803-66802822 None:intergenic 25.0%
!! ATACATGAAATAGAGTACTA+TGG - chr8_3:66803163-66803182 None:intergenic 25.0%
! GTATTGTTCTTATAAAGTCT+TGG + chr8_3:66803179-66803198 Msa1303620:intron 25.0%
! AAATATTCATTCATCTTTCG+AGG - chr8_3:66803276-66803295 None:intergenic 25.0%
!! TTTAGCTTATAAAACCGTAA+TGG + chr8_3:66803345-66803364 Msa1303620:intron 25.0%
!! GAACTGATTTAACAAAATGA+TGG - chr8_3:66803491-66803510 None:intergenic 25.0%
! GATGATTTTTGCAACAACTT+TGG - chr8_3:66802371-66802390 None:intergenic 30.0%
CAATAAACAAAGGAGGAAAA+GGG - chr8_3:66802425-66802444 None:intergenic 30.0%
ACAATAAACAAAGGAGGAAA+AGG - chr8_3:66802426-66802445 None:intergenic 30.0%
!!! CATATGTAGTTTTGAAGACA+TGG - chr8_3:66802502-66802521 None:intergenic 30.0%
ATCATCACATACTGAAACAA+AGG - chr8_3:66802595-66802614 None:intergenic 30.0%
ATATATATGACTGTGAATGC+TGG + chr8_3:66802844-66802863 Msa1303620:intron 30.0%
ACGAGTTAGAATGTATGAAA+TGG - chr8_3:66802905-66802924 None:intergenic 30.0%
GTTTATTACTCTGAACTTAG+AGG + chr8_3:66802958-66802977 Msa1303620:intron 30.0%
! TTTAAAATTGGTATCCCCAT+AGG + chr8_3:66803378-66803397 Msa1303620:intron 30.0%
AAAAGAATAGGGAAGTTTCT+TGG - chr8_3:66803450-66803469 None:intergenic 30.0%
! TTTTGTTAAATCAGTTCACG+TGG + chr8_3:66803494-66803513 Msa1303620:intron 30.0%
ATTATGGAAAGGAAGTTGTT+TGG - chr8_3:66803666-66803685 None:intergenic 30.0%
ACATTCATCTCATGGAATTA+TGG - chr8_3:66803682-66803701 None:intergenic 30.0%
TAACTATGACATTCATCTCA+TGG - chr8_3:66803690-66803709 None:intergenic 30.0%
! GATGATTTTTGCAACAACTT+TGG - chr8_3:66802371-66802390 None:intergenic 30.0%
CAATAAACAAAGGAGGAAAA+GGG - chr8_3:66802425-66802444 None:intergenic 30.0%
ACAATAAACAAAGGAGGAAA+AGG - chr8_3:66802426-66802445 None:intergenic 30.0%
!!! CATATGTAGTTTTGAAGACA+TGG - chr8_3:66802502-66802521 None:intergenic 30.0%
ATCATCACATACTGAAACAA+AGG - chr8_3:66802595-66802614 None:intergenic 30.0%
ATATATATGACTGTGAATGC+TGG + chr8_3:66802844-66802863 Msa1303620:intron 30.0%
ACGAGTTAGAATGTATGAAA+TGG - chr8_3:66802905-66802924 None:intergenic 30.0%
GTTTATTACTCTGAACTTAG+AGG + chr8_3:66802958-66802977 Msa1303620:intron 30.0%
! TTTAAAATTGGTATCCCCAT+AGG + chr8_3:66803378-66803397 Msa1303620:intron 30.0%
AAAAGAATAGGGAAGTTTCT+TGG - chr8_3:66803450-66803469 None:intergenic 30.0%
! TTTTGTTAAATCAGTTCACG+TGG + chr8_3:66803494-66803513 Msa1303620:intron 30.0%
ATTATGGAAAGGAAGTTGTT+TGG - chr8_3:66803666-66803685 None:intergenic 30.0%
ACATTCATCTCATGGAATTA+TGG - chr8_3:66803682-66803701 None:intergenic 30.0%
TAACTATGACATTCATCTCA+TGG - chr8_3:66803690-66803709 None:intergenic 30.0%
!!! ACAAATTCGTGTTTTGGAGT+TGG - chr8_3:66802218-66802237 None:intergenic 35.0%
! TCACACACAAATTCGTGTTT+TGG - chr8_3:66802224-66802243 None:intergenic 35.0%
! GATTTTTGCAACAACTTTGG+TGG - chr8_3:66802368-66802387 None:intergenic 35.0%
! AAGGGTTAAAATGGACTCAA+CGG - chr8_3:66802407-66802426 None:intergenic 35.0%
AAGGAGGAAAAGGGTTAAAA+TGG - chr8_3:66802416-66802435 None:intergenic 35.0%
!!! TGTAGTTTTGAAGACATGGT+TGG - chr8_3:66802498-66802517 None:intergenic 35.0%
TTAAGACTACGATTGAGTGT+TGG - chr8_3:66802535-66802554 None:intergenic 35.0%
! GTGATGATTTTGTTGAATGG+TGG + chr8_3:66802607-66802626 Msa1303620:CDS 35.0%
AATTGATATCAGCTCTCCAT+AGG - chr8_3:66802671-66802690 None:intergenic 35.0%
TATGGAGAGCTGATATCAAT+TGG + chr8_3:66802670-66802689 Msa1303620:CDS 35.0%
! CTCAGTTTTGCATTAACACT+TGG - chr8_3:66802706-66802725 None:intergenic 35.0%
! CATCAAATTTTATGACTCCG+AGG + chr8_3:66802783-66802802 Msa1303620:CDS 35.0%
AGGTTTCTCATTGTGTTTGT+TGG + chr8_3:66802978-66802997 Msa1303620:intron 35.0%
! TTTCTCATTGTGTTTGTTGG+AGG + chr8_3:66802981-66803000 Msa1303620:intron 35.0%
AATCAGTTCACGTGGAAATA+AGG + chr8_3:66803502-66803521 Msa1303620:intron 35.0%
TTCACGTGGAAATAAGGAAA+GGG + chr8_3:66803508-66803527 Msa1303620:intron 35.0%
GACACATCACATTCTTACTT+TGG - chr8_3:66803554-66803573 None:intergenic 35.0%
! TGCTCAAGCGTATTTTATCA+TGG + chr8_3:66803618-66803637 Msa1303620:intron 35.0%
! TCAAGCGTATTTTATCATGG+AGG + chr8_3:66803621-66803640 Msa1303620:intron 35.0%
! CAAGCGTATTTTATCATGGA+GGG + chr8_3:66803622-66803641 Msa1303620:intron 35.0%
CATCTCATGGAATTATGGAA+AGG - chr8_3:66803677-66803696 None:intergenic 35.0%
TATGGTAAAGACTGATCAGA+AGG - chr8_3:66803798-66803817 None:intergenic 35.0%
TGATCAGTCTTTACCATACT+GGG + chr8_3:66803800-66803819 Msa1303620:exon 35.0%
TCAAAATGACACAGAACAGA+AGG - chr8_3:66803937-66803956 None:intergenic 35.0%
!!! ACAAATTCGTGTTTTGGAGT+TGG - chr8_3:66802218-66802237 None:intergenic 35.0%
! TCACACACAAATTCGTGTTT+TGG - chr8_3:66802224-66802243 None:intergenic 35.0%
! GATTTTTGCAACAACTTTGG+TGG - chr8_3:66802368-66802387 None:intergenic 35.0%
! AAGGGTTAAAATGGACTCAA+CGG - chr8_3:66802407-66802426 None:intergenic 35.0%
AAGGAGGAAAAGGGTTAAAA+TGG - chr8_3:66802416-66802435 None:intergenic 35.0%
!!! TGTAGTTTTGAAGACATGGT+TGG - chr8_3:66802498-66802517 None:intergenic 35.0%
TTAAGACTACGATTGAGTGT+TGG - chr8_3:66802535-66802554 None:intergenic 35.0%
! GTGATGATTTTGTTGAATGG+TGG + chr8_3:66802607-66802626 Msa1303620:CDS 35.0%
AATTGATATCAGCTCTCCAT+AGG - chr8_3:66802671-66802690 None:intergenic 35.0%
TATGGAGAGCTGATATCAAT+TGG + chr8_3:66802670-66802689 Msa1303620:CDS 35.0%
! CTCAGTTTTGCATTAACACT+TGG - chr8_3:66802706-66802725 None:intergenic 35.0%
! CATCAAATTTTATGACTCCG+AGG + chr8_3:66802783-66802802 Msa1303620:CDS 35.0%
AGGTTTCTCATTGTGTTTGT+TGG + chr8_3:66802978-66802997 Msa1303620:intron 35.0%
! TTTCTCATTGTGTTTGTTGG+AGG + chr8_3:66802981-66803000 Msa1303620:intron 35.0%
AATCAGTTCACGTGGAAATA+AGG + chr8_3:66803502-66803521 Msa1303620:intron 35.0%
TTCACGTGGAAATAAGGAAA+GGG + chr8_3:66803508-66803527 Msa1303620:intron 35.0%
GACACATCACATTCTTACTT+TGG - chr8_3:66803554-66803573 None:intergenic 35.0%
! TGCTCAAGCGTATTTTATCA+TGG + chr8_3:66803618-66803637 Msa1303620:intron 35.0%
! TCAAGCGTATTTTATCATGG+AGG + chr8_3:66803621-66803640 Msa1303620:intron 35.0%
! CAAGCGTATTTTATCATGGA+GGG + chr8_3:66803622-66803641 Msa1303620:intron 35.0%
CATCTCATGGAATTATGGAA+AGG - chr8_3:66803677-66803696 None:intergenic 35.0%
TATGGTAAAGACTGATCAGA+AGG - chr8_3:66803798-66803817 None:intergenic 35.0%
TGATCAGTCTTTACCATACT+GGG + chr8_3:66803800-66803819 Msa1303620:exon 35.0%
TCAAAATGACACAGAACAGA+AGG - chr8_3:66803937-66803956 None:intergenic 35.0%
AGACAAACACCTTATCCTGA+AGG + chr8_3:66802256-66802275 Msa1303620:five_prime_UTR 40.0%
TTGGTGAAGAGGTTCAAAGT+GGG - chr8_3:66802301-66802320 None:intergenic 40.0%
AAGCAATAACAGGATCAACG+GGG - chr8_3:66802327-66802346 None:intergenic 40.0%
GAAGCAATAACAGGATCAAC+GGG - chr8_3:66802328-66802347 None:intergenic 40.0%
GGAAGCAATAACAGGATCAA+CGG - chr8_3:66802329-66802348 None:intergenic 40.0%
AGAATGTCGGAAGCAATAAC+AGG - chr8_3:66802337-66802356 None:intergenic 40.0%
TTATTGCTTCCGACATTCTC+AGG + chr8_3:66802338-66802357 Msa1303620:CDS 40.0%
TATTGCTTCCGACATTCTCA+GGG + chr8_3:66802339-66802358 Msa1303620:CDS 40.0%
! AAAATGGACTCAACGGATTC+AGG - chr8_3:66802400-66802419 None:intergenic 40.0%
TGGGCAACAATAAACAAAGG+AGG - chr8_3:66802432-66802451 None:intergenic 40.0%
! TGGTGGGCAACAATAAACAA+AGG - chr8_3:66802435-66802454 None:intergenic 40.0%
TCGAGGTGAAATATTCCTCA+AGG - chr8_3:66803259-66803278 None:intergenic 40.0%
AAATTGGTATCCCCATAGGA+AGG + chr8_3:66803382-66803401 Msa1303620:intron 40.0%
AATTGGTATCCCCATAGGAA+GGG + chr8_3:66803383-66803402 Msa1303620:intron 40.0%
GTTCACGTGGAAATAAGGAA+AGG + chr8_3:66803507-66803526 Msa1303620:intron 40.0%
! GTATTTTATCATGGAGGGTG+TGG + chr8_3:66803627-66803646 Msa1303620:intron 40.0%
GGAAAGGAAGTTGTTTGGAT+CGG - chr8_3:66803661-66803680 None:intergenic 40.0%
!!! TTGTGCAGCGCTCATTTTTT+GGG + chr8_3:66803759-66803778 Msa1303620:intron 40.0%
!!! CGCTCATTTTTTGGGTTCAA+TGG + chr8_3:66803767-66803786 Msa1303620:CDS 40.0%
CTGATCAGTCTTTACCATAC+TGG + chr8_3:66803799-66803818 Msa1303620:exon 40.0%
GATCAGTCTTTACCATACTG+GGG + chr8_3:66803801-66803820 Msa1303620:exon 40.0%
AGACAAACACCTTATCCTGA+AGG + chr8_3:66802256-66802275 Msa1303620:five_prime_UTR 40.0%
TTGGTGAAGAGGTTCAAAGT+GGG - chr8_3:66802301-66802320 None:intergenic 40.0%
AAGCAATAACAGGATCAACG+GGG - chr8_3:66802327-66802346 None:intergenic 40.0%
GAAGCAATAACAGGATCAAC+GGG - chr8_3:66802328-66802347 None:intergenic 40.0%
GGAAGCAATAACAGGATCAA+CGG - chr8_3:66802329-66802348 None:intergenic 40.0%
AGAATGTCGGAAGCAATAAC+AGG - chr8_3:66802337-66802356 None:intergenic 40.0%
TTATTGCTTCCGACATTCTC+AGG + chr8_3:66802338-66802357 Msa1303620:CDS 40.0%
TATTGCTTCCGACATTCTCA+GGG + chr8_3:66802339-66802358 Msa1303620:CDS 40.0%
! AAAATGGACTCAACGGATTC+AGG - chr8_3:66802400-66802419 None:intergenic 40.0%
TGGGCAACAATAAACAAAGG+AGG - chr8_3:66802432-66802451 None:intergenic 40.0%
! TGGTGGGCAACAATAAACAA+AGG - chr8_3:66802435-66802454 None:intergenic 40.0%
TCGAGGTGAAATATTCCTCA+AGG - chr8_3:66803259-66803278 None:intergenic 40.0%
AAATTGGTATCCCCATAGGA+AGG + chr8_3:66803382-66803401 Msa1303620:intron 40.0%
AATTGGTATCCCCATAGGAA+GGG + chr8_3:66803383-66803402 Msa1303620:intron 40.0%
GTTCACGTGGAAATAAGGAA+AGG + chr8_3:66803507-66803526 Msa1303620:intron 40.0%
! GTATTTTATCATGGAGGGTG+TGG + chr8_3:66803627-66803646 Msa1303620:intron 40.0%
GGAAAGGAAGTTGTTTGGAT+CGG - chr8_3:66803661-66803680 None:intergenic 40.0%
!!! TTGTGCAGCGCTCATTTTTT+GGG + chr8_3:66803759-66803778 Msa1303620:intron 40.0%
!!! CGCTCATTTTTTGGGTTCAA+TGG + chr8_3:66803767-66803786 Msa1303620:CDS 40.0%
CTGATCAGTCTTTACCATAC+TGG + chr8_3:66803799-66803818 Msa1303620:exon 40.0%
GATCAGTCTTTACCATACTG+GGG + chr8_3:66803801-66803820 Msa1303620:exon 40.0%
ACCTTATCCTGAAGGACTCA+AGG + chr8_3:66802264-66802283 Msa1303620:five_prime_UTR 45.0%
TCCTTGAGTCCTTCAGGATA+AGG - chr8_3:66802268-66802287 None:intergenic 45.0%
! GTTGGTGAAGAGGTTCAAAG+TGG - chr8_3:66802302-66802321 None:intergenic 45.0%
!! GACTACGATTGAGTGTTGGT+GGG - chr8_3:66802531-66802550 None:intergenic 45.0%
!! AGACTACGATTGAGTGTTGG+TGG - chr8_3:66802532-66802551 None:intergenic 45.0%
GAGTGCCTATTGCATTTGGT+GGG + chr8_3:66802629-66802648 Msa1303620:CDS 45.0%
TCAGTCCCACCAAATGCAAT+AGG - chr8_3:66802637-66802656 None:intergenic 45.0%
GGAGAGCTGATATCAATTGG+CGG + chr8_3:66802673-66802692 Msa1303620:CDS 45.0%
!! CTGATATCAATTGGCGGACT+TGG + chr8_3:66802679-66802698 Msa1303620:CDS 45.0%
! CTCATTGTGTTTGTTGGAGG+AGG + chr8_3:66802984-66803003 Msa1303620:intron 45.0%
TTGTTGGAGGAGGCAAAGAT+AGG + chr8_3:66802994-66803013 Msa1303620:intron 45.0%
AACACCGTATCAGTAGCCTA+TGG + chr8_3:66803208-66803227 Msa1303620:intron 45.0%
ATTGGTATCCCCATAGGAAG+GGG + chr8_3:66803384-66803403 Msa1303620:intron 45.0%
TCTCTCTAACCCCTTCCTAT+GGG - chr8_3:66803396-66803415 None:intergenic 45.0%
!!! GTTGTGCAGCGCTCATTTTT+TGG + chr8_3:66803758-66803777 Msa1303620:intron 45.0%
CTTGAGAAACTTCCCCAGTA+TGG - chr8_3:66803816-66803835 None:intergenic 45.0%
CATACTGGGGAAGTTTCTCA+AGG + chr8_3:66803814-66803833 Msa1303620:three_prime_UTR 45.0%
ACCTTATCCTGAAGGACTCA+AGG + chr8_3:66802264-66802283 Msa1303620:five_prime_UTR 45.0%
TCCTTGAGTCCTTCAGGATA+AGG - chr8_3:66802268-66802287 None:intergenic 45.0%
! GTTGGTGAAGAGGTTCAAAG+TGG - chr8_3:66802302-66802321 None:intergenic 45.0%
!! GACTACGATTGAGTGTTGGT+GGG - chr8_3:66802531-66802550 None:intergenic 45.0%
!! AGACTACGATTGAGTGTTGG+TGG - chr8_3:66802532-66802551 None:intergenic 45.0%
GAGTGCCTATTGCATTTGGT+GGG + chr8_3:66802629-66802648 Msa1303620:CDS 45.0%
TCAGTCCCACCAAATGCAAT+AGG - chr8_3:66802637-66802656 None:intergenic 45.0%
GGAGAGCTGATATCAATTGG+CGG + chr8_3:66802673-66802692 Msa1303620:CDS 45.0%
!! CTGATATCAATTGGCGGACT+TGG + chr8_3:66802679-66802698 Msa1303620:CDS 45.0%
! CTCATTGTGTTTGTTGGAGG+AGG + chr8_3:66802984-66803003 Msa1303620:intron 45.0%
TTGTTGGAGGAGGCAAAGAT+AGG + chr8_3:66802994-66803013 Msa1303620:intron 45.0%
AACACCGTATCAGTAGCCTA+TGG + chr8_3:66803208-66803227 Msa1303620:intron 45.0%
ATTGGTATCCCCATAGGAAG+GGG + chr8_3:66803384-66803403 Msa1303620:intron 45.0%
TCTCTCTAACCCCTTCCTAT+GGG - chr8_3:66803396-66803415 None:intergenic 45.0%
!!! GTTGTGCAGCGCTCATTTTT+TGG + chr8_3:66803758-66803777 Msa1303620:intron 45.0%
CTTGAGAAACTTCCCCAGTA+TGG - chr8_3:66803816-66803835 None:intergenic 45.0%
CATACTGGGGAAGTTTCTCA+AGG + chr8_3:66803814-66803833 Msa1303620:three_prime_UTR 45.0%
AACAGGATCAACGGGGATGT+TGG - chr8_3:66802320-66802339 None:intergenic 50.0%
! GGTGGAGTGCCTATTGCATT+TGG + chr8_3:66802625-66802644 Msa1303620:CDS 50.0%
! GGAGTGCCTATTGCATTTGG+TGG + chr8_3:66802628-66802647 Msa1303620:CDS 50.0%
! ATTTGGTGGGACTGAAGAGC+CGG + chr8_3:66802642-66802661 Msa1303620:CDS 50.0%
ACCGTATCAGTAGCCTATGG+CGG + chr8_3:66803211-66803230 Msa1303620:intron 50.0%
TCCGCCATAGGCTACTGATA+CGG - chr8_3:66803215-66803234 None:intergenic 50.0%
GTGTGAGGATGTTGTCCTTG+AGG + chr8_3:66803241-66803260 Msa1303620:intron 50.0%
CTCTCTAACCCCTTCCTATG+GGG - chr8_3:66803395-66803414 None:intergenic 50.0%
CTCTCTCTAACCCCTTCCTA+TGG - chr8_3:66803397-66803416 None:intergenic 50.0%
CATAGGAAGGGGTTAGAGAG+AGG + chr8_3:66803395-66803414 Msa1303620:intron 50.0%
AACAGGATCAACGGGGATGT+TGG - chr8_3:66802320-66802339 None:intergenic 50.0%
! GGTGGAGTGCCTATTGCATT+TGG + chr8_3:66802625-66802644 Msa1303620:CDS 50.0%
! GGAGTGCCTATTGCATTTGG+TGG + chr8_3:66802628-66802647 Msa1303620:CDS 50.0%
! ATTTGGTGGGACTGAAGAGC+CGG + chr8_3:66802642-66802661 Msa1303620:CDS 50.0%
ACCGTATCAGTAGCCTATGG+CGG + chr8_3:66803211-66803230 Msa1303620:intron 50.0%
TCCGCCATAGGCTACTGATA+CGG - chr8_3:66803215-66803234 None:intergenic 50.0%
GTGTGAGGATGTTGTCCTTG+AGG + chr8_3:66803241-66803260 Msa1303620:intron 50.0%
CTCTCTAACCCCTTCCTATG+GGG - chr8_3:66803395-66803414 None:intergenic 50.0%
CTCTCTCTAACCCCTTCCTA+TGG - chr8_3:66803397-66803416 None:intergenic 50.0%
CATAGGAAGGGGTTAGAGAG+AGG + chr8_3:66803395-66803414 Msa1303620:intron 50.0%
GCGTTGTCCTTGAGTCCTTC+AGG - chr8_3:66802274-66802293 None:intergenic 55.0%
! CAACGGGGATGTTGGTGAAG+AGG - chr8_3:66802312-66802331 None:intergenic 55.0%
GGTGGCATCCCTGAGAATGT+CGG - chr8_3:66802350-66802369 None:intergenic 55.0%
ATCAGCTCTCCATAGGCAGC+CGG - chr8_3:66802664-66802683 None:intergenic 55.0%
TCACACACAGTCTCCGCCAT+AGG - chr8_3:66803227-66803246 None:intergenic 55.0%
! TATGGCGGAGACTGTGTGTG+AGG + chr8_3:66803226-66803245 Msa1303620:intron 55.0%
GCGTTGTCCTTGAGTCCTTC+AGG - chr8_3:66802274-66802293 None:intergenic 55.0%
! CAACGGGGATGTTGGTGAAG+AGG - chr8_3:66802312-66802331 None:intergenic 55.0%
GGTGGCATCCCTGAGAATGT+CGG - chr8_3:66802350-66802369 None:intergenic 55.0%
ATCAGCTCTCCATAGGCAGC+CGG - chr8_3:66802664-66802683 None:intergenic 55.0%
TCACACACAGTCTCCGCCAT+AGG - chr8_3:66803227-66803246 None:intergenic 55.0%
! TATGGCGGAGACTGTGTGTG+AGG + chr8_3:66803226-66803245 Msa1303620:intron 55.0%
ACTGAAGAGCCGGCTGCCTA+TGG + chr8_3:66802652-66802671 Msa1303620:CDS 60.0%
ACTGAAGAGCCGGCTGCCTA+TGG + chr8_3:66802652-66802671 Msa1303620:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 66802193 66803993 66802193 ID=Msa1303620;Name=Msa1303620
chr8_3 mRNA 66802193 66803993 66802193 ID=Msa1303620-mRNA-1;Parent=Msa1303620;Name=Msa1303620-mRNA-1;_AED=0.46;_eAED=0.46;_QI=102|1|1|1|1|1|3|191|115
chr8_3 exon 66802193 66802405 66802193 ID=Msa1303620-mRNA-1:exon:20374;Parent=Msa1303620-mRNA-1
chr8_3 exon 66802604 66802804 66802604 ID=Msa1303620-mRNA-1:exon:20375;Parent=Msa1303620-mRNA-1
chr8_3 exon 66803767 66803993 66803767 ID=Msa1303620-mRNA-1:exon:20376;Parent=Msa1303620-mRNA-1
chr8_3 five_prime_UTR 66802193 66802294 66802193 ID=Msa1303620-mRNA-1:five_prime_utr;Parent=Msa1303620-mRNA-1
chr8_3 CDS 66802295 66802405 66802295 ID=Msa1303620-mRNA-1:cds;Parent=Msa1303620-mRNA-1
chr8_3 CDS 66802604 66802804 66802604 ID=Msa1303620-mRNA-1:cds;Parent=Msa1303620-mRNA-1
chr8_3 CDS 66803767 66803802 66803767 ID=Msa1303620-mRNA-1:cds;Parent=Msa1303620-mRNA-1
chr8_3 three_prime_UTR 66803803 66803993 66803803 ID=Msa1303620-mRNA-1:three_prime_utr;Parent=Msa1303620-mRNA-1
Gene Sequence

>Msa1303620

ATGCCCACTTTGAACCTCTTCACCAACATCCCCGTTGATCCTGTTATTGCTTCCGACATTCTCAGGGATGCCACCAAAGTTGTTGCAAAAATCATCGGAAAACCTGAATCCTATGTGATGATTTTGTTGAATGGTGGAGTGCCTATTGCATTTGGTGGGACTGAAGAGCCGGCTGCCTATGGAGAGCTGATATCAATTGGCGGACTTGGTCCAAGTGTTAATGCAAAACTGAGTTCTACTATTGCAGAAATCCTTCAAACTAAACTATACATTGATAGCTCCAGATTCTACATCAAATTTTATGACTCCGAGCGCTCATTTTTTGGGTTCAATGGCTCAACCTTCTGA

Protein sequence

>Msa1303620

MPTLNLFTNIPVDPVIASDILRDATKVVAKIIGKPESYVMILLNGGVPIAFGGTEEPAAYGELISIGGLGPSVNAKLSSTIAEILQTKLYIDSSRFYIKFYDSERSFFGFNGSTF*