Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1190820 | AET02997.1 | 100.000 | 63 | 0 | 0 | 1 | 63 | 1 | 63 | 6.48e-37 | 127 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1190820 | sp|Q96386|MT3_CARPA | 66.667 | 66 | 18 | 3 | 1 | 63 | 1 | 65 | 2.39e-21 | 81.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0008850 | Msa1190820 | 0.814465 | 1.519954e-51 | -8.615850e-47 |
Msa0012740 | Msa1190820 | 0.825054 | 5.776121e-54 | -8.615850e-47 |
Msa0017120 | Msa1190820 | 0.808592 | 2.871784e-50 | -8.615850e-47 |
Msa0033600 | Msa1190820 | 0.806119 | 9.602197e-50 | -8.615850e-47 |
Msa0033650 | Msa1190820 | 0.810212 | 1.289488e-50 | -8.615850e-47 |
Msa0038310 | Msa1190820 | 0.826022 | 3.407572e-54 | -8.615850e-47 |
Msa0039200 | Msa1190820 | 0.803490 | 3.400759e-49 | -8.615850e-47 |
Msa0040190 | Msa1190820 | 0.831582 | 1.538241e-55 | -8.615850e-47 |
Msa0047470 | Msa1190820 | 0.802028 | 6.811662e-49 | -8.615850e-47 |
Msa0050730 | Msa1190820 | 0.822654 | 2.109720e-53 | -8.615850e-47 |
Msa0050760 | Msa1190820 | 0.816074 | 6.669634e-52 | -8.615850e-47 |
Msa0056040 | Msa1190820 | 0.805877 | 1.079694e-49 | -8.615850e-47 |
Msa0060600 | Msa1190820 | 0.804932 | 1.703942e-49 | -8.615850e-47 |
Msa0065390 | Msa1190820 | 0.807806 | 4.221483e-50 | -8.615850e-47 |
Msa0074760 | Msa1190820 | 0.835596 | 1.530178e-56 | -8.615850e-47 |
Msa0075850 | Msa1190820 | 0.833155 | 6.273957e-56 | -8.615850e-47 |
Msa0083160 | Msa1190820 | 0.803521 | 3.350679e-49 | -8.615850e-47 |
Msa0086090 | Msa1190820 | 0.845292 | 4.448336e-59 | -8.615850e-47 |
Msa0086820 | Msa1190820 | 0.800839 | 1.193787e-48 | -8.615850e-47 |
Msa0087880 | Msa1190820 | 0.811026 | 8.598434e-51 | -8.615850e-47 |
Msa0097980 | Msa1190820 | 0.805816 | 1.111750e-49 | -8.615850e-47 |
Msa0102410 | Msa1190820 | 0.818090 | 2.349411e-52 | -8.615850e-47 |
Msa0110710 | Msa1190820 | 0.810313 | 1.226381e-50 | -8.615850e-47 |
Msa0606060 | Msa1190820 | 0.842792 | 2.082229e-58 | -8.615850e-47 |
Msa0619330 | Msa1190820 | 0.803638 | 3.168059e-49 | -8.615850e-47 |
Msa0622390 | Msa1190820 | 0.819352 | 1.215172e-52 | -8.615850e-47 |
Msa0634420 | Msa1190820 | 0.815765 | 7.818800e-52 | -8.615850e-47 |
Msa0641400 | Msa1190820 | 0.800843 | 1.191687e-48 | -8.615850e-47 |
Msa0647000 | Msa1190820 | 0.822768 | 1.985026e-53 | -8.615850e-47 |
Msa0654060 | Msa1190820 | 0.813864 | 2.062489e-51 | -8.615850e-47 |
Msa0662850 | Msa1190820 | 0.805025 | 1.629178e-49 | -8.615850e-47 |
Msa0674320 | Msa1190820 | 0.808104 | 3.648567e-50 | -8.615850e-47 |
Msa0686610 | Msa1190820 | 0.834761 | 2.486799e-56 | -8.615850e-47 |
Msa0702070 | Msa1190820 | 0.807760 | 4.318597e-50 | -8.615850e-47 |
Msa0719340 | Msa1190820 | 0.805529 | 1.277741e-49 | -8.615850e-47 |
Msa0724050 | Msa1190820 | 0.807439 | 5.051867e-50 | -8.615850e-47 |
Msa0726610 | Msa1190820 | 0.812923 | 3.321178e-51 | -8.615850e-47 |
Msa0739570 | Msa1190820 | 0.848343 | 6.511295e-60 | -8.615850e-47 |
Msa0739610 | Msa1190820 | 0.810040 | 1.404838e-50 | -8.615850e-47 |
Msa0740420 | Msa1190820 | 0.807041 | 6.134027e-50 | -8.615850e-47 |
Msa0756480 | Msa1190820 | 0.824456 | 7.991199e-54 | -8.615850e-47 |
Msa0758820 | Msa1190820 | 0.814386 | 1.581730e-51 | -8.615850e-47 |
Msa0763880 | Msa1190820 | 0.817124 | 3.879460e-52 | -8.615850e-47 |
Msa0763910 | Msa1190820 | 0.809047 | 2.294496e-50 | -8.615850e-47 |
Msa0766880 | Msa1190820 | 0.801877 | 7.316511e-49 | -8.615850e-47 |
Msa0771960 | Msa1190820 | 0.803643 | 3.160777e-49 | -8.615850e-47 |
Msa0772150 | Msa1190820 | 0.822555 | 2.225252e-53 | -8.615850e-47 |
Msa0772210 | Msa1190820 | 0.824127 | 9.553034e-54 | -8.615850e-47 |
Msa0782330 | Msa1190820 | 0.844520 | 7.184191e-59 | -8.615850e-47 |
Msa0783270 | Msa1190820 | 0.815966 | 7.049839e-52 | -8.615850e-47 |
Msa0802500 | Msa1190820 | 0.806144 | 9.486047e-50 | -8.615850e-47 |
Msa0819330 | Msa1190820 | 0.807139 | 5.848419e-50 | -8.615850e-47 |
Msa0820670 | Msa1190820 | 0.806809 | 6.868143e-50 | -8.615850e-47 |
Msa0835510 | Msa1190820 | 0.816018 | 6.863383e-52 | -8.615850e-47 |
Msa0838660 | Msa1190820 | 0.825977 | 3.491283e-54 | -8.615850e-47 |
Msa0132620 | Msa1190820 | 0.820315 | 7.320127e-53 | -8.615850e-47 |
Msa0133670 | Msa1190820 | 0.804639 | 1.961104e-49 | -8.615850e-47 |
Msa0133880 | Msa1190820 | 0.807348 | 5.280592e-50 | -8.615850e-47 |
Msa0134550 | Msa1190820 | 0.815399 | 9.429000e-52 | -8.615850e-47 |
Msa0140910 | Msa1190820 | 0.802536 | 5.355994e-49 | -8.615850e-47 |
Msa0141670 | Msa1190820 | 0.851999 | 6.155226e-61 | -8.615850e-47 |
Msa0151690 | Msa1190820 | 0.807950 | 3.934554e-50 | -8.615850e-47 |
Msa0157020 | Msa1190820 | 0.804239 | 2.376736e-49 | -8.615850e-47 |
Msa0168390 | Msa1190820 | 0.855844 | 4.802179e-62 | -8.615850e-47 |
Msa0169960 | Msa1190820 | 0.806098 | 9.699958e-50 | -8.615850e-47 |
Msa0184120 | Msa1190820 | 0.804138 | 2.494514e-49 | -8.615850e-47 |
Msa0193200 | Msa1190820 | 0.812250 | 4.659272e-51 | -8.615850e-47 |
Msa0211010 | Msa1190820 | 0.817124 | 3.879460e-52 | -8.615850e-47 |
Msa0221800 | Msa1190820 | 0.816042 | 6.780414e-52 | -8.615850e-47 |
Msa0371610 | Msa1190820 | 0.851299 | 9.717885e-61 | -8.615850e-47 |
Msa0390950 | Msa1190820 | 0.800958 | 1.128888e-48 | -8.615850e-47 |
Msa0418000 | Msa1190820 | 0.814998 | 1.158076e-51 | -8.615850e-47 |
Msa0420070 | Msa1190820 | 0.803311 | 3.703834e-49 | -8.615850e-47 |
Msa0423600 | Msa1190820 | 0.810907 | 9.127419e-51 | -8.615850e-47 |
Msa0427050 | Msa1190820 | 0.819283 | 1.259783e-52 | -8.615850e-47 |
Msa1016110 | Msa1190820 | 0.801901 | 7.234242e-49 | -8.615850e-47 |
Msa1040770 | Msa1190820 | 0.801448 | 8.959497e-49 | -8.615850e-47 |
Msa1044040 | Msa1190820 | 0.823517 | 1.327649e-53 | -8.615850e-47 |
Msa1079610 | Msa1190820 | 0.810455 | 1.143122e-50 | -8.615850e-47 |
Msa1081600 | Msa1190820 | 0.842981 | 1.854836e-58 | -8.615850e-47 |
Msa1105850 | Msa1190820 | 0.818087 | 2.353085e-52 | -8.615850e-47 |
Msa0284870 | Msa1190820 | 0.831455 | 1.652821e-55 | -8.615850e-47 |
Msa0296610 | Msa1190820 | 0.807157 | 5.798481e-50 | -8.615850e-47 |
Msa0301800 | Msa1190820 | 0.803770 | 2.974343e-49 | -8.615850e-47 |
Msa0306130 | Msa1190820 | 0.852184 | 5.453642e-61 | -8.615850e-47 |
Msa0323630 | Msa1190820 | 0.828530 | 8.543597e-55 | -8.615850e-47 |
Msa0330270 | Msa1190820 | 0.803940 | 2.742807e-49 | -8.615850e-47 |
Msa0338570 | Msa1190820 | 0.810210 | 1.290772e-50 | -8.615850e-47 |
Msa1123340 | Msa1190820 | 0.802282 | 6.040737e-49 | -8.615850e-47 |
Msa1166370 | Msa1190820 | 0.838208 | 3.296765e-57 | -8.615850e-47 |
Msa1184580 | Msa1190820 | 0.806838 | 6.771975e-50 | -8.615850e-47 |
Msa1190820 | Msa1198450 | 0.800080 | 1.704356e-48 | -8.615850e-47 |
Msa1190820 | Msa1214400 | 0.803356 | 3.625349e-49 | -8.615850e-47 |
Msa1190820 | Msa1220740 | 0.820553 | 6.455605e-53 | -8.615850e-47 |
Msa1190820 | Msa1221260 | 0.819945 | 8.894467e-53 | -8.615850e-47 |
Msa1190820 | Msa1244830 | 0.890294 | 1.122325e-73 | -8.615850e-47 |
Msa1190820 | Msa1264140 | 0.837706 | 4.436093e-57 | -8.615850e-47 |
Msa1190820 | Msa1289340 | 0.805193 | 1.502185e-49 | -8.615850e-47 |
Msa1190820 | Msa1302150 | 0.808134 | 3.594641e-50 | -8.615850e-47 |
Msa1190820 | Msa1302160 | 0.821356 | 4.218472e-53 | -8.615850e-47 |
Msa1190820 | Msa1302780 | 0.828070 | 1.102599e-54 | -8.615850e-47 |
Msa1190820 | Msa1306200 | 0.800799 | 1.216335e-48 | -8.615850e-47 |
Msa1190820 | Msa1323060 | 0.811430 | 7.029462e-51 | -8.615850e-47 |
Msa1190820 | Msa1327820 | 0.807290 | 5.432615e-50 | -8.615850e-47 |
Msa1190820 | Msa1334650 | 0.813055 | 3.106225e-51 | -8.615850e-47 |
Msa1190820 | Msa1337190 | 0.805847 | 1.095234e-49 | -8.615850e-47 |
Msa1190820 | Msa1351590 | 0.804521 | 2.075835e-49 | -8.615850e-47 |
Msa1190820 | Msa1352820 | 0.801577 | 8.432000e-49 | -8.615850e-47 |
Msa1190820 | Msa1355260 | 0.816764 | 4.675014e-52 | -8.615850e-47 |
Msa1190820 | Msa1365210 | 0.808384 | 3.180642e-50 | -8.615850e-47 |
Msa1190820 | Msa1387090 | 0.809729 | 1.638235e-50 | -8.615850e-47 |
Msa1190820 | Msa1388850 | 0.800377 | 1.483244e-48 | -8.615850e-47 |
Msa1190820 | Msa1392680 | 0.827301 | 1.687573e-54 | -8.615850e-47 |
Msa1190820 | Msa1397540 | 0.819793 | 9.635987e-53 | -8.615850e-47 |
Msa1190820 | Msa1405770 | 0.806197 | 9.245199e-50 | -8.615850e-47 |
Msa1190820 | Msa1422750 | 0.808316 | 3.288971e-50 | -8.615850e-47 |
Msa1190820 | Msa1435470 | 0.804034 | 2.622370e-49 | -8.615850e-47 |
Msa1190820 | Msa1440600 | 0.818464 | 1.933902e-52 | -8.615850e-47 |
Msa0511890 | Msa1190820 | 0.848260 | 6.866355e-60 | -8.615850e-47 |
Msa0530210 | Msa1190820 | 0.801846 | 7.426339e-49 | -8.615850e-47 |
Msa0538260 | Msa1190820 | 0.808272 | 3.359929e-50 | -8.615850e-47 |
Msa0538270 | Msa1190820 | 0.812480 | 4.151367e-51 | -8.615850e-47 |
Msa0540340 | Msa1190820 | 0.803425 | 3.507719e-49 | -8.615850e-47 |
Msa0577870 | Msa1190820 | 0.822396 | 2.422797e-53 | -8.615850e-47 |
Msa0581340 | Msa1190820 | 0.817911 | 2.578947e-52 | -8.615850e-47 |
Msa0594180 | Msa1190820 | 0.823724 | 1.186999e-53 | -8.615850e-47 |
Msa0598250 | Msa1190820 | 0.823832 | 1.120109e-53 | -8.615850e-47 |
Msa0855520 | Msa1190820 | 0.801091 | 1.060192e-48 | -8.615850e-47 |
Msa0860270 | Msa1190820 | 0.851138 | 1.078738e-60 | -8.615850e-47 |
Msa0955310 | Msa1190820 | 0.825614 | 4.257615e-54 | -8.615850e-47 |
Msa0971860 | Msa1190820 | 0.814046 | 1.880314e-51 | -8.615850e-47 |
Msa0978000 | Msa1190820 | 0.815932 | 7.173933e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1190820 | MtrunA17_Chr8g0360121 | 100.000 | 63 | 0 | 0 | 1 | 63 | 1 | 63 | 5.96e-41 | 127 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1190820 | AT3G15353.1 | 57.576 | 66 | 23 | 2 | 1 | 61 | 1 | 66 | 1.04e-17 | 69.7 |
Msa1190820 | AT3G15353.2 | 56.923 | 65 | 23 | 2 | 1 | 61 | 1 | 64 | 5.29e-17 | 67.8 |
Find 19 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTTGCATATATTCTTTAA+TGG | 0.154703 | 8_1:+34091454 | None:intergenic |
TTGTGGCATTCTGTTGTTAC+TGG | 0.188780 | 8_1:-34091310 | Msa1190820:three_prime_UTR |
AAATGTAATTGCCATGAATT+TGG | 0.244815 | 8_1:-34091436 | Msa1190820:three_prime_UTR |
ATGAGCTTGACATGTTTGTT+TGG | 0.442431 | 8_1:+34091887 | None:intergenic |
ATATATTCTTTAATGGCCAC+AGG | 0.505243 | 8_1:+34091461 | None:intergenic |
TTGCAATCATGCTCAACAGC+TGG | 0.507300 | 8_1:+34091516 | None:intergenic |
TGTGGCATTCTGTTGTTACT+GGG | 0.512610 | 8_1:-34091309 | Msa1190820:three_prime_UTR |
CTTCGTCGAGACTGTTGTCA+TGG | 0.555720 | 8_1:-34091544 | Msa1190820:CDS |
ATTATACAACTGCCATGTTG+TGG | 0.564419 | 8_1:-34091327 | Msa1190820:three_prime_UTR |
AGAGGAGCACTTACCCGCAC+TGG | 0.574771 | 8_1:+34091836 | None:intergenic |
GTTGAGCATGATTGCAAGTG+TGG | 0.581040 | 8_1:-34091510 | Msa1190820:CDS |
TTCAGGAAGGGAAACAACTA+CGG | 0.588697 | 8_1:-34091707 | Msa1190820:intron |
GCGCTGACAAGAGCCAGTGC+GGG | 0.597634 | 8_1:-34091849 | Msa1190820:intron |
ACAAACATGTCAAGCTCATG+CGG | 0.602184 | 8_1:-34091883 | Msa1190820:exon |
TGCGCTGACAAGAGCCAGTG+CGG | 0.611618 | 8_1:-34091850 | Msa1190820:CDS |
AACAACAGAATGCCACAACA+TGG | 0.645156 | 8_1:+34091315 | None:intergenic |
ACTTGCACTAACTGCACCTG+TGG | 0.650678 | 8_1:-34091477 | Msa1190820:CDS |
CCTCTTCTGAGTCTCGACAA+TGG | 0.679042 | 8_1:+34091679 | None:intergenic |
CCATTGTCGAGACTCAGAAG+AGG | 0.690774 | 8_1:-34091679 | Msa1190820:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CATTTGCATATATTCTTTAA+TGG | + | chr8_1:34091638-34091657 | None:intergenic | 20.0% |
!! | CATTTGCATATATTCTTTAA+TGG | + | chr8_1:34091638-34091657 | None:intergenic | 20.0% |
!!! | AAGGTTGATGTGTATTTTAT+TGG | - | chr8_1:34091288-34091307 | Msa1190820:three_prime_UTR | 25.0% |
! | AAATGTAATTGCCATGAATT+TGG | - | chr8_1:34091653-34091672 | Msa1190820:intron | 25.0% |
!!! | AGATCTTTTTTGAAGTGAAT+TGG | + | chr8_1:34091930-34091949 | None:intergenic | 25.0% |
!!! | AAGGTTGATGTGTATTTTAT+TGG | - | chr8_1:34091288-34091307 | Msa1190820:three_prime_UTR | 25.0% |
! | AAATGTAATTGCCATGAATT+TGG | - | chr8_1:34091653-34091672 | Msa1190820:intron | 25.0% |
!!! | AGATCTTTTTTGAAGTGAAT+TGG | + | chr8_1:34091930-34091949 | None:intergenic | 25.0% |
TACCATAGCATCATATATGA+GGG | + | chr8_1:34091362-34091381 | None:intergenic | 30.0% | |
ATACCATAGCATCATATATG+AGG | + | chr8_1:34091363-34091382 | None:intergenic | 30.0% | |
TATATGATGCTATGGTATTC+AGG | - | chr8_1:34091365-34091384 | Msa1190820:three_prime_UTR | 30.0% | |
ATATATTCTTTAATGGCCAC+AGG | + | chr8_1:34091631-34091650 | None:intergenic | 30.0% | |
! | GTTTTGTATTGCCAAATTCA+TGG | + | chr8_1:34091667-34091686 | None:intergenic | 30.0% |
TACCATAGCATCATATATGA+GGG | + | chr8_1:34091362-34091381 | None:intergenic | 30.0% | |
ATACCATAGCATCATATATG+AGG | + | chr8_1:34091363-34091382 | None:intergenic | 30.0% | |
TATATGATGCTATGGTATTC+AGG | - | chr8_1:34091365-34091384 | Msa1190820:three_prime_UTR | 30.0% | |
ATATATTCTTTAATGGCCAC+AGG | + | chr8_1:34091631-34091650 | None:intergenic | 30.0% | |
! | GTTTTGTATTGCCAAATTCA+TGG | + | chr8_1:34091667-34091686 | None:intergenic | 30.0% |
ATGAGCTTGACATGTTTGTT+TGG | + | chr8_1:34091205-34091224 | None:intergenic | 35.0% | |
AACCTTACAGTACAAGATAG+AGG | + | chr8_1:34091274-34091293 | None:intergenic | 35.0% | |
ACCATAGCATCATATATGAG+GGG | + | chr8_1:34091361-34091380 | None:intergenic | 35.0% | |
TCGAGGAGTTATTAGAAACA+TGG | + | chr8_1:34091465-34091484 | None:intergenic | 35.0% | |
ATTATACAACTGCCATGTTG+TGG | - | chr8_1:34091762-34091781 | Msa1190820:intron | 35.0% | |
ATGAGCTTGACATGTTTGTT+TGG | + | chr8_1:34091205-34091224 | None:intergenic | 35.0% | |
AACCTTACAGTACAAGATAG+AGG | + | chr8_1:34091274-34091293 | None:intergenic | 35.0% | |
ACCATAGCATCATATATGAG+GGG | + | chr8_1:34091361-34091380 | None:intergenic | 35.0% | |
TCGAGGAGTTATTAGAAACA+TGG | + | chr8_1:34091465-34091484 | None:intergenic | 35.0% | |
ATTATACAACTGCCATGTTG+TGG | - | chr8_1:34091762-34091781 | Msa1190820:intron | 35.0% | |
ACAAACATGTCAAGCTCATG+CGG | - | chr8_1:34091206-34091225 | Msa1190820:three_prime_UTR | 40.0% | |
CTCCTCTATCTTGTACTGTA+AGG | - | chr8_1:34091269-34091288 | Msa1190820:three_prime_UTR | 40.0% | |
TCCCCTCATATATGATGCTA+TGG | - | chr8_1:34091357-34091376 | Msa1190820:three_prime_UTR | 40.0% | |
TGATGCTATGGTATTCAGGA+AGG | - | chr8_1:34091369-34091388 | Msa1190820:three_prime_UTR | 40.0% | |
GATGCTATGGTATTCAGGAA+GGG | - | chr8_1:34091370-34091389 | Msa1190820:three_prime_UTR | 40.0% | |
TTCAGGAAGGGAAACAACTA+CGG | - | chr8_1:34091382-34091401 | Msa1190820:three_prime_UTR | 40.0% | |
AACAACAGAATGCCACAACA+TGG | + | chr8_1:34091777-34091796 | None:intergenic | 40.0% | |
TTGTGGCATTCTGTTGTTAC+TGG | - | chr8_1:34091779-34091798 | Msa1190820:intron | 40.0% | |
TGTGGCATTCTGTTGTTACT+GGG | - | chr8_1:34091780-34091799 | Msa1190820:intron | 40.0% | |
ACAAACATGTCAAGCTCATG+CGG | - | chr8_1:34091206-34091225 | Msa1190820:three_prime_UTR | 40.0% | |
CTCCTCTATCTTGTACTGTA+AGG | - | chr8_1:34091269-34091288 | Msa1190820:three_prime_UTR | 40.0% | |
TCCCCTCATATATGATGCTA+TGG | - | chr8_1:34091357-34091376 | Msa1190820:three_prime_UTR | 40.0% | |
TGATGCTATGGTATTCAGGA+AGG | - | chr8_1:34091369-34091388 | Msa1190820:three_prime_UTR | 40.0% | |
GATGCTATGGTATTCAGGAA+GGG | - | chr8_1:34091370-34091389 | Msa1190820:three_prime_UTR | 40.0% | |
TTCAGGAAGGGAAACAACTA+CGG | - | chr8_1:34091382-34091401 | Msa1190820:three_prime_UTR | 40.0% | |
AACAACAGAATGCCACAACA+TGG | + | chr8_1:34091777-34091796 | None:intergenic | 40.0% | |
TTGTGGCATTCTGTTGTTAC+TGG | - | chr8_1:34091779-34091798 | Msa1190820:intron | 40.0% | |
TGTGGCATTCTGTTGTTACT+GGG | - | chr8_1:34091780-34091799 | Msa1190820:intron | 40.0% | |
TTGCAATCATGCTCAACAGC+TGG | + | chr8_1:34091576-34091595 | None:intergenic | 45.0% | |
GTTGAGCATGATTGCAAGTG+TGG | - | chr8_1:34091579-34091598 | Msa1190820:intron | 45.0% | |
TTGCAATCATGCTCAACAGC+TGG | + | chr8_1:34091576-34091595 | None:intergenic | 45.0% | |
GTTGAGCATGATTGCAAGTG+TGG | - | chr8_1:34091579-34091598 | Msa1190820:intron | 45.0% | |
CCTCTTCTGAGTCTCGACAA+TGG | + | chr8_1:34091413-34091432 | None:intergenic | 50.0% | |
CCATTGTCGAGACTCAGAAG+AGG | - | chr8_1:34091410-34091429 | Msa1190820:three_prime_UTR | 50.0% | |
!! | GCTAGCTTTGCATTGAGTCG+AGG | + | chr8_1:34091482-34091501 | None:intergenic | 50.0% |
CTTCGTCGAGACTGTTGTCA+TGG | - | chr8_1:34091545-34091564 | Msa1190820:CDS | 50.0% | |
ACTTGCACTAACTGCACCTG+TGG | - | chr8_1:34091612-34091631 | Msa1190820:intron | 50.0% | |
CCTCTTCTGAGTCTCGACAA+TGG | + | chr8_1:34091413-34091432 | None:intergenic | 50.0% | |
CCATTGTCGAGACTCAGAAG+AGG | - | chr8_1:34091410-34091429 | Msa1190820:three_prime_UTR | 50.0% | |
!! | GCTAGCTTTGCATTGAGTCG+AGG | + | chr8_1:34091482-34091501 | None:intergenic | 50.0% |
CTTCGTCGAGACTGTTGTCA+TGG | - | chr8_1:34091545-34091564 | Msa1190820:CDS | 50.0% | |
ACTTGCACTAACTGCACCTG+TGG | - | chr8_1:34091612-34091631 | Msa1190820:intron | 50.0% | |
! | TGCGCTGACAAGAGCCAGTG+CGG | - | chr8_1:34091239-34091258 | Msa1190820:three_prime_UTR | 60.0% |
!! | AGAGGAGCACTTACCCGCAC+TGG | + | chr8_1:34091256-34091275 | None:intergenic | 60.0% |
! | TGCGCTGACAAGAGCCAGTG+CGG | - | chr8_1:34091239-34091258 | Msa1190820:three_prime_UTR | 60.0% |
!! | AGAGGAGCACTTACCCGCAC+TGG | + | chr8_1:34091256-34091275 | None:intergenic | 60.0% |
! | GCGCTGACAAGAGCCAGTGC+GGG | - | chr8_1:34091240-34091259 | Msa1190820:three_prime_UTR | 65.0% |
! | GCGCTGACAAGAGCCAGTGC+GGG | - | chr8_1:34091240-34091259 | Msa1190820:three_prime_UTR | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 34091151 | 34091960 | 34091151 | ID=Msa1190820;Name=Msa1190820 |
chr8_1 | mRNA | 34091151 | 34091960 | 34091151 | ID=Msa1190820-mRNA-1;Parent=Msa1190820;Name=Msa1190820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=61|1|1|1|1|1|3|319|63 |
chr8_1 | exon | 34091151 | 34091566 | 34091151 | ID=Msa1190820-mRNA-1:exon:11487;Parent=Msa1190820-mRNA-1 |
chr8_1 | exon | 34091680 | 34091724 | 34091680 | ID=Msa1190820-mRNA-1:exon:11486;Parent=Msa1190820-mRNA-1 |
chr8_1 | exon | 34091850 | 34091960 | 34091850 | ID=Msa1190820-mRNA-1:exon:11485;Parent=Msa1190820-mRNA-1 |
chr8_1 | five_prime_UTR | 34091900 | 34091960 | 34091900 | ID=Msa1190820-mRNA-1:five_prime_utr;Parent=Msa1190820-mRNA-1 |
chr8_1 | CDS | 34091850 | 34091899 | 34091850 | ID=Msa1190820-mRNA-1:cds;Parent=Msa1190820-mRNA-1 |
chr8_1 | CDS | 34091680 | 34091724 | 34091680 | ID=Msa1190820-mRNA-1:cds;Parent=Msa1190820-mRNA-1 |
chr8_1 | CDS | 34091470 | 34091566 | 34091470 | ID=Msa1190820-mRNA-1:cds;Parent=Msa1190820-mRNA-1 |
chr8_1 | three_prime_UTR | 34091151 | 34091469 | 34091151 | ID=Msa1190820-mRNA-1:three_prime_utr;Parent=Msa1190820-mRNA-1 |
Gene Sequence |
Protein sequence |