AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713550 MtrunA17_Chr5g0400451 95.368 475 21 1 1 475 1 474 0.0 888
Msa0713550 MtrunA17_Chr8g0343421 25.559 313 201 9 172 470 243 537 6.38e-18 86.7
Msa0713550 MtrunA17_Chr7g0229961 25.240 313 202 9 172 470 244 538 1.18e-17 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713550 AT1G32500.1 58.672 467 182 5 13 470 11 475 0.0 542
Msa0713550 AT4G04770.1 26.263 297 194 7 172 455 254 538 2.79e-19 91.3

Find 133 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATTGGGGCGGGGAGGATT+TGG 0.223915 5_1:-5727375 None:intergenic
AAGTCAGATTAAAAGTTTAT+TGG 0.227386 5_1:+5730339 Msa0713550:CDS
TGGACGGTGGAGATTTATTT+TGG 0.233451 5_1:+5727575 Msa0713550:CDS
TGGTGGTGGTGGTTGGGATT+GGG 0.235303 5_1:-5727390 None:intergenic
GTGGTGGTGGTGGTTGGGAT+TGG 0.236284 5_1:-5727391 None:intergenic
GATTGGGGCGGGGAGGATTT+GGG 0.272960 5_1:-5727374 None:intergenic
GGTGGTGGTGGTTGGGATTG+GGG 0.279949 5_1:-5727389 None:intergenic
GGTTGAAACTCCGGTTCATT+TGG 0.289943 5_1:+5727657 Msa0713550:CDS
GCCTCAATTGTTACAATTGC+CGG 0.290023 5_1:-5730508 None:intergenic
TGTTATTGCTAAGAGGGTTT+TGG 0.313556 5_1:+5727537 Msa0713550:CDS
ACAGAAGTTGGCTTTGTTCC+AGG 0.315039 5_1:-5730204 None:intergenic
TCAGCAATGATTTGGAGATT+TGG 0.333268 5_1:-5730145 None:intergenic
GGAATGATAATGAGTGTTAT+TGG 0.334871 5_1:+5727797 Msa0713550:CDS
GTGGTGGTTGGGATTGGGGC+GGG 0.338823 5_1:-5727385 None:intergenic
CTATCTCTAATGGAAGAATT+AGG 0.339561 5_1:-5730310 None:intergenic
AGCTTGATAAAAGTATAAAT+TGG 0.339576 5_1:+5730420 Msa0713550:three_prime_UTR
GTTGAATGTGACTCTGGTTT+TGG 0.342738 5_1:-5727164 None:intergenic
AGAAGAAGATGATGGGATTA+TGG 0.348829 5_1:-5727110 None:intergenic
ACGGAAACGTCAAGGTTAAC+AGG 0.350131 5_1:+5729055 Msa0713550:CDS
TTATGTACCGGAGGGTGTTC+AGG 0.356045 5_1:+5727636 Msa0713550:CDS
ACCTACAATTGTGATCATTT+AGG 0.356993 5_1:-5730370 None:intergenic
TGACGTCATCAGCAATGATT+TGG 0.358930 5_1:-5730153 None:intergenic
ACGTGGCAGGGGAATTGATC+GGG 0.365093 5_1:-5727421 None:intergenic
TATATCGAATCCGAGGGTTT+TGG 0.370433 5_1:+5727726 Msa0713550:CDS
GTAAGCACAGGAGGCAAACT+TGG 0.373309 5_1:+5728847 Msa0713550:CDS
TTATTGGAGTAATGCTGTTT+TGG 0.374251 5_1:+5727813 Msa0713550:CDS
AGCTGACATAACATGTTTAC+AGG 0.376884 5_1:-5730401 None:intergenic
ACTTCGTACTCTATCTCTAA+TGG 0.380409 5_1:-5730320 None:intergenic
TGGTGGTTGGGATTGGGGCG+GGG 0.391272 5_1:-5727384 None:intergenic
TTGGAGGTTGTGATTGGGGA+AGG 0.394788 5_1:+5727832 Msa0713550:CDS
ACAATCAACTTCAAAATTCT+CGG 0.395737 5_1:+5727468 Msa0713550:CDS
GTTGAAACTCCGGTTCATTT+GGG 0.396052 5_1:+5727658 Msa0713550:CDS
TTGATTCAGAAACAGCTAGA+AGG 0.399795 5_1:+5730245 Msa0713550:CDS
TCTTCACAGTAGTCTTGTAT+TGG 0.400205 5_1:+5728960 Msa0713550:CDS
GATATAGTTGAGGAGTTTGA+AGG 0.406381 5_1:+5727775 Msa0713550:CDS
TTTGGAATTGGTATCTGGAT+TGG 0.420346 5_1:+5727555 Msa0713550:CDS
TCCTAAATGATCACAATTGT+AGG 0.421889 5_1:+5730369 Msa0713550:exon
TGTAGGGACGGAGTCTTCTA+AGG 0.425260 5_1:-5727236 None:intergenic
CAAATGGACTTCTGTTCGTC+AGG 0.432884 5_1:+5727909 Msa0713550:CDS
ACATAAACCACCGTCAAATC+CGG 0.439129 5_1:-5727619 None:intergenic
TGGTTGGGATTGGGGCGGGG+AGG 0.441570 5_1:-5727381 None:intergenic
TCAGCGAGGTCGAGAATGAA+TGG 0.453976 5_1:-5727211 None:intergenic
GGTGGTGGTTGGGATTGGGG+CGG 0.456675 5_1:-5727386 None:intergenic
GATAACTCTGTCACTGTGTC+CGG 0.460261 5_1:-5728901 None:intergenic
GATTTGGGATGAGCGGAGGA+AGG 0.467041 5_1:-5727359 None:intergenic
TGAATGGTGTTATTGCTAAG+AGG 0.467060 5_1:+5727530 Msa0713550:CDS
GGTAATTTGTCAAAATTGAA+TGG 0.468521 5_1:+5727514 Msa0713550:CDS
TGCTTGCCGCGCATATCAAA+TGG 0.468727 5_1:+5727893 Msa0713550:CDS
CGGGGAGGATTTGGGATGAG+CGG 0.472875 5_1:-5727366 None:intergenic
GTCAACGATGCTGACGTGGC+AGG 0.472987 5_1:-5727434 None:intergenic
GTGCATTGTGGCTCATTCAC+AGG 0.474620 5_1:+5729017 Msa0713550:CDS
TATGCTCAGCAGACAGATGC+TGG 0.480588 5_1:+5730070 Msa0713550:CDS
TTGGTGGTGGTGGAGAATGG+TGG 0.480612 5_1:+5727745 Msa0713550:CDS
GAGGTTGTGATTGGGGAAGG+TGG 0.480973 5_1:+5727835 Msa0713550:CDS
GAATGGTGTTATTGCTAAGA+GGG 0.481175 5_1:+5727531 Msa0713550:CDS
CTGAATCAATGCCACGTGCT+TGG 0.483064 5_1:-5730231 None:intergenic
GATGATGAAGAAGAAGATGA+TGG 0.495014 5_1:-5727118 None:intergenic
TGTGATTGGGGAAGGTGGCA+AGG 0.496641 5_1:+5727840 Msa0713550:CDS
TTGCACGAGGTTCAAGAAGA+AGG 0.497992 5_1:-5730108 None:intergenic
TCAACGATGCTGACGTGGCA+GGG 0.499449 5_1:-5727433 None:intergenic
AATCTCTTCTCTCTTCTCCA+TGG 0.503098 5_1:+5727296 Msa0713550:CDS
AATGGGTGCACCGGATTTGA+CGG 0.505675 5_1:+5727609 Msa0713550:CDS
CGAAGACTGTGGAGAGGTTG+TGG 0.506329 5_1:-5727259 None:intergenic
TGCCACGTCAGCATCGTTGA+CGG 0.508578 5_1:+5727436 Msa0713550:CDS
AATTGTGATCATTTAGGAGA+TGG 0.509008 5_1:-5730364 None:intergenic
GGTCACTTATTGCAGCTCCA+TGG 0.511189 5_1:-5730183 None:intergenic
TCATATCAAACAACTAGGTC+CGG 0.512491 5_1:+5728882 Msa0713550:CDS
GATACATAACCCAAATGAAC+CGG 0.513043 5_1:-5727667 None:intergenic
GTCACTTATTGCAGCTCCAT+GGG 0.518219 5_1:-5730182 None:intergenic
TGCGTTGTTGAATGTGACTC+TGG 0.519290 5_1:-5727170 None:intergenic
TGTATCGTTGCAGAGTAGTA+AGG 0.522175 5_1:+5727684 Msa0713550:CDS
TCCGGCAATTGTAACAATTG+AGG 0.522631 5_1:+5730507 Msa0713550:three_prime_UTR
GAAAATAAATTTGTCAGGTG+AGG 0.529099 5_1:+5730576 Msa0713550:three_prime_UTR
CAACTAGAAGTGCATGGTGA+TGG 0.532423 5_1:-5730536 None:intergenic
GACGTGGCAGGGGAATTGAT+CGG 0.533599 5_1:-5727422 None:intergenic
GTGCTTGGAAATACAGAAGT+TGG 0.533653 5_1:-5730216 None:intergenic
TTTGACGGTGGTTTATGTAC+CGG 0.541831 5_1:+5727624 Msa0713550:CDS
CTGTGGAGAGGTTGTGGTGT+AGG 0.543065 5_1:-5727253 None:intergenic
CAACGATGCTGACGTGGCAG+GGG 0.543308 5_1:-5727432 None:intergenic
GTCTTGTATTGGATCATCCA+AGG 0.548517 5_1:+5728971 Msa0713550:CDS
TGATTCAGAAACAGCTAGAA+GGG 0.550672 5_1:+5730246 Msa0713550:CDS
GGACTCGCAGTTGTGTATGT+AGG 0.554163 5_1:+5730619 Msa0713550:three_prime_UTR
GAGAGGTTGTGGTGTAGGGA+CGG 0.557143 5_1:-5727248 None:intergenic
TCAACTTTGCACTTGTCAGT+TGG 0.557345 5_1:+5728922 Msa0713550:CDS
GTTTCAACCTGAACACCCTC+CGG 0.557730 5_1:-5727643 None:intergenic
ATCTATCACTTCCCCTCCAA+AGG 0.558266 5_1:-5730281 None:intergenic
TCTTGTATTGGATCATCCAA+GGG 0.561446 5_1:+5728972 Msa0713550:CDS
TGTGGAGAGGTTGTGGTGTA+GGG 0.564194 5_1:-5727252 None:intergenic
GTGGCAGGGGAATTGATCGG+GGG 0.565438 5_1:-5727419 None:intergenic
GCACAGGAGGCAAACTTGGA+AGG 0.565571 5_1:+5728851 Msa0713550:CDS
ATCTGACGGGAATAACCCCT+TGG 0.566453 5_1:-5728988 None:intergenic
TGCATTGTGGCTCATTCACA+GGG 0.566881 5_1:+5729018 Msa0713550:CDS
GGAGAAGTCGTTGAAGCGAA+AGG 0.568994 5_1:-5727338 None:intergenic
CAATGCACTTATGAATCTGA+CGG 0.571017 5_1:-5729002 None:intergenic
ATATAGTTGAGGAGTTTGAA+GGG 0.571311 5_1:+5727776 Msa0713550:CDS
GGGTGTTCAGGTTGAAACTC+CGG 0.571357 5_1:+5727648 Msa0713550:CDS
CGTGGCAGGGGAATTGATCG+GGG 0.572596 5_1:-5727420 None:intergenic
GGAGGATTTGGGATGAGCGG+AGG 0.577123 5_1:-5727363 None:intergenic
ATGATGAAGAAGAAGATGAT+GGG 0.577329 5_1:-5727117 None:intergenic
GAGCTTACAGAAGTAAGCAC+AGG 0.578828 5_1:+5728835 Msa0713550:CDS
TCCACCACCACCAAAACCCT+CGG 0.581717 5_1:-5727736 None:intergenic
GAGAAGTCGTTGAAGCGAAA+GGG 0.582355 5_1:-5727337 None:intergenic
CAGCGAGGTCGAGAATGAAT+GGG 0.582930 5_1:-5727210 None:intergenic
AATGCACTTATGAATCTGAC+GGG 0.586814 5_1:-5729001 None:intergenic
ACAAAATGAAGTGTCTACTC+CGG 0.588350 5_1:+5730489 Msa0713550:three_prime_UTR
GGTGGTGGAGAATGGTGGTG+AGG 0.595224 5_1:+5727750 Msa0713550:CDS
GAATTGGTATCTGGATTGGA+CGG 0.597060 5_1:+5727559 Msa0713550:CDS
TGGAGCTGCAATAAGTGACC+TGG 0.598264 5_1:+5730186 Msa0713550:CDS
GACGGTGGTTTATGTACCGG+AGG 0.598657 5_1:+5727627 Msa0713550:CDS
GATTAATGGAATGGGTGCAC+CGG 0.603821 5_1:+5727600 Msa0713550:CDS
GACCGTCAACGATGCTGACG+TGG 0.604811 5_1:-5727438 None:intergenic
AGATGTATATATCGAATCCG+AGG 0.610367 5_1:+5727719 Msa0713550:CDS
CTTACAGAAGTAAGCACAGG+AGG 0.618684 5_1:+5728838 Msa0713550:CDS
AATCTTCATATCAAACAACT+AGG 0.623363 5_1:+5728877 Msa0713550:CDS
ATTATGGAGTTGAATGCTGC+GGG 0.626580 5_1:-5727094 None:intergenic
CTTCTGTATTTCCAAGCACG+TGG 0.628093 5_1:+5730220 Msa0713550:CDS
GATGACGTCAAGTGTTCCCA+TGG 0.629397 5_1:+5730166 Msa0713550:CDS
ACGGTGGTTTATGTACCGGA+GGG 0.631873 5_1:+5727628 Msa0713550:CDS
AAGAAGATTCTCGAAGACTG+TGG 0.639780 5_1:-5727270 None:intergenic
TAAATACAACTAGAAGTGCA+TGG 0.640373 5_1:-5730542 None:intergenic
GGGTGCACCGGATTTGACGG+TGG 0.641084 5_1:+5727612 Msa0713550:CDS
AGAAGTCCATTTGATATGCG+CGG 0.652340 5_1:-5727899 None:intergenic
TCGTTGCAGAGTAGTAAGGA+AGG 0.655313 5_1:+5727688 Msa0713550:CDS
GTCAGTTGGTAATCAAACAC+AGG 0.657011 5_1:+5728936 Msa0713550:CDS
GATGTATATATCGAATCCGA+GGG 0.671373 5_1:+5727720 Msa0713550:CDS
TCAGATTCATAAGTGCATTG+TGG 0.677608 5_1:+5729005 Msa0713550:CDS
GATTCTCGAAGACTGTGGAG+AGG 0.677831 5_1:-5727265 None:intergenic
TGGTGAGGTTGATATAGTTG+AGG 0.690189 5_1:+5727765 Msa0713550:CDS
CTTGTATTGGATCATCCAAG+GGG 0.694144 5_1:+5728973 Msa0713550:CDS
TTGGTATCTGGATTGGACGG+TGG 0.694952 5_1:+5727562 Msa0713550:CDS
TTAACATTTACAGTTGCACG+AGG 0.704403 5_1:-5730121 None:intergenic
GATTATGGAGTTGAATGCTG+CGG 0.713690 5_1:-5727095 None:intergenic
AGTCTTCTAAGGTTTCAGCG+AGG 0.795490 5_1:-5727225 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTTGTTATAGATTATAA+AGG - chr5_1:5728490-5728509 None:intergenic 15.0%
!! TAAACATATATACAATTGTA+AGG - chr5_1:5729209-5729228 None:intergenic 15.0%
!! TACAATTGTATATATGTTTA+CGG + chr5_1:5729209-5729228 Msa0713550:intron 15.0%
!! ATTACTAACAAAATTAACAT+TGG - chr5_1:5729344-5729363 None:intergenic 15.0%
!!! AAATTTTTATTTATTGAGCT+AGG + chr5_1:5729967-5729986 Msa0713550:intron 15.0%
!!! AGTTGTATTTATGTATTTTT+TGG + chr5_1:5730554-5730573 Msa0713550:three_prime_UTR 15.0%
!! GAGTATGAATTTATTGTTTA+TGG + chr5_1:5728069-5728088 Msa0713550:intron 20.0%
!! TTATTGTTTATGGAATGAAA+AGG + chr5_1:5728079-5728098 Msa0713550:intron 20.0%
!! TAGAAAAAATTTGACATGAT+TGG + chr5_1:5728770-5728789 Msa0713550:intron 20.0%
!! ATTGTTAGCATTAATTATAC+TGG + chr5_1:5729362-5729381 Msa0713550:intron 20.0%
!! TTGTTAGCATTAATTATACT+GGG + chr5_1:5729363-5729382 Msa0713550:intron 20.0%
!! TTCTTACATAAATGACTAAA+AGG - chr5_1:5729497-5729516 None:intergenic 20.0%
!! AAGTCATTAGATTATATTGT+GGG - chr5_1:5729632-5729651 None:intergenic 20.0%
!! TAAGTCATTAGATTATATTG+TGG - chr5_1:5729633-5729652 None:intergenic 20.0%
!! GTACAAAAATAAAGTCAAAT+GGG - chr5_1:5729708-5729727 None:intergenic 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG - chr5_1:5729790-5729809 None:intergenic 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG - chr5_1:5729791-5729810 None:intergenic 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG - chr5_1:5729792-5729811 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG + chr5_1:5729833-5729852 Msa0713550:intron 20.0%
!! AAGAAATGTGAATAAAACAA+AGG + chr5_1:5729915-5729934 Msa0713550:intron 20.0%
!! AGAAATGTGAATAAAACAAA+GGG + chr5_1:5729916-5729935 Msa0713550:intron 20.0%
!! AAGTCAGATTAAAAGTTTAT+TGG + chr5_1:5730339-5730358 Msa0713550:CDS 20.0%
!!! AGCTTGATAAAAGTATAAAT+TGG + chr5_1:5730420-5730439 Msa0713550:three_prime_UTR 20.0%
!!! AAAAATATTGTTTCTTGTCA+TGG + chr5_1:5730450-5730469 Msa0713550:three_prime_UTR 20.0%
!!! TTTTGGAAAATAAATTTGTC+AGG + chr5_1:5730571-5730590 Msa0713550:three_prime_UTR 20.0%
!! GTGAGTAAAAAAACAATAAT+AGG + chr5_1:5730598-5730617 Msa0713550:three_prime_UTR 20.0%
! ACAATCAACTTCAAAATTCT+CGG + chr5_1:5727468-5727487 Msa0713550:CDS 25.0%
!! GGTAATTTGTCAAAATTGAA+TGG + chr5_1:5727514-5727533 Msa0713550:CDS 25.0%
!!! GATTTATTTTGGTCGATTAA+TGG + chr5_1:5727586-5727605 Msa0713550:CDS 25.0%
! TTATGTTGGAATAGTAAAAC+TGG + chr5_1:5728102-5728121 Msa0713550:intron 25.0%
! TATGTTGGAATAGTAAAACT+GGG + chr5_1:5728103-5728122 Msa0713550:intron 25.0%
! TATGCAATTCTTAGTGTTAT+AGG + chr5_1:5728220-5728239 Msa0713550:intron 25.0%
!! GCAATTTATCTTTTAGTATC+TGG + chr5_1:5728406-5728425 Msa0713550:intron 25.0%
! TTAGTGCAAAAATGTTCTTA+TGG + chr5_1:5728549-5728568 Msa0713550:intron 25.0%
! TAATGGCTAACTATATACAA+AGG + chr5_1:5728589-5728608 Msa0713550:intron 25.0%
! TGTGATTGTTAAACATTTAC+AGG + chr5_1:5728795-5728814 Msa0713550:intron 25.0%
! AATCTTCATATCAAACAACT+AGG + chr5_1:5728877-5728896 Msa0713550:CDS 25.0%
! GTTAGAAACTAATCGAAAAT+TGG - chr5_1:5729122-5729141 None:intergenic 25.0%
! TATGTTTACGGAGAAATTAA+CGG + chr5_1:5729221-5729240 Msa0713550:intron 25.0%
!! TACAATAACAAGGGTATATA+AGG - chr5_1:5729459-5729478 None:intergenic 25.0%
! AGTCATTAGATTATATTGTG+GGG - chr5_1:5729631-5729650 None:intergenic 25.0%
! GGTACAAAAATAAAGTCAAA+TGG - chr5_1:5729709-5729728 None:intergenic 25.0%
!! ATTAATTAGGGGTATGTTTA+GGG - chr5_1:5729779-5729798 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - chr5_1:5729780-5729799 None:intergenic 25.0%
! AGTGTATTACTGATATAAAG+TGG - chr5_1:5730037-5730056 None:intergenic 25.0%
!! GTAATACACTATTCTTGTTT+AGG + chr5_1:5730047-5730066 Msa0713550:intron 25.0%
!! ACACTTCATTTTGTAGAAAT+TGG - chr5_1:5730483-5730502 None:intergenic 25.0%
ATGATGAAGAAGAAGATGAT+GGG - chr5_1:5727120-5727139 None:intergenic 30.0%
!! ATTTTGGTCGATTAATGGAA+TGG + chr5_1:5727591-5727610 Msa0713550:CDS 30.0%
! TTTTGGTCGATTAATGGAAT+GGG + chr5_1:5727592-5727611 Msa0713550:CDS 30.0%
ATATAGTTGAGGAGTTTGAA+GGG + chr5_1:5727776-5727795 Msa0713550:CDS 30.0%
! GGAATGATAATGAGTGTTAT+TGG + chr5_1:5727797-5727816 Msa0713550:CDS 30.0%
!! TTATTGGAGTAATGCTGTTT+TGG + chr5_1:5727813-5727832 Msa0713550:CDS 30.0%
ATGGAATGAAAAGGTTATGT+TGG + chr5_1:5728088-5728107 Msa0713550:intron 30.0%
AATAGTAAAACTGGGTCTAA+AGG + chr5_1:5728111-5728130 Msa0713550:intron 30.0%
GTTATCAAAGAAGTAGTCAT+AGG - chr5_1:5728173-5728192 None:intergenic 30.0%
!! ACTACTTCTTTGATAACGAA+GGG + chr5_1:5728176-5728195 Msa0713550:intron 30.0%
GTGTTATAGGTATAATGTTG+CGG + chr5_1:5728233-5728252 Msa0713550:intron 30.0%
AAATTGCAAGTGATTCCATT+AGG - chr5_1:5728393-5728412 None:intergenic 30.0%
! ACTTTTGACGAAGAAGATAA+TGG + chr5_1:5728572-5728591 Msa0713550:intron 30.0%
GCTAACTATATACAAAGGAA+GGG + chr5_1:5728594-5728613 Msa0713550:intron 30.0%
CACACGAAATGCAAAAATAA+AGG - chr5_1:5728659-5728678 None:intergenic 30.0%
! AACAATACAAGAGTGGATTT+AGG + chr5_1:5729096-5729115 Msa0713550:intron 30.0%
TACAATTGTAAGGACTTCTT+CGG - chr5_1:5729199-5729218 None:intergenic 30.0%
! TAATTTTACCTGTCTTGCTA+TGG + chr5_1:5729277-5729296 Msa0713550:intron 30.0%
! AAGGGTATATAAGGTTTGTT+TGG - chr5_1:5729450-5729469 None:intergenic 30.0%
GGATATACGTACAATAACAA+GGG - chr5_1:5729468-5729487 None:intergenic 30.0%
TGGATATACGTACAATAACA+AGG - chr5_1:5729469-5729488 None:intergenic 30.0%
TAAATGACTAAAAGGCAGTT+TGG - chr5_1:5729489-5729508 None:intergenic 30.0%
! GTGCTTTTATGTATCAAGAA+TGG + chr5_1:5729518-5729537 Msa0713550:intron 30.0%
CAAAAATAAAGTCAAATGGG+TGG - chr5_1:5729705-5729724 None:intergenic 30.0%
TTGAAAAGGGGTTTAGATTT+AGG - chr5_1:5729730-5729749 None:intergenic 30.0%
TGCATCTCGTAATTTGAAAA+GGG - chr5_1:5729743-5729762 None:intergenic 30.0%
ATGCATCTCGTAATTTGAAA+AGG - chr5_1:5729744-5729763 None:intergenic 30.0%
AATGTGAATAAAACAAAGGG+AGG + chr5_1:5729919-5729938 Msa0713550:intron 30.0%
ATTTATTGAGCTAGGACATA+TGG + chr5_1:5729975-5729994 Msa0713550:intron 30.0%
! TTCTAATTTTTGCCTTTGGA+GGG + chr5_1:5730269-5730288 Msa0713550:CDS 30.0%
CTATCTCTAATGGAAGAATT+AGG - chr5_1:5730313-5730332 None:intergenic 30.0%
AATTGTGATCATTTAGGAGA+TGG - chr5_1:5730367-5730386 None:intergenic 30.0%
TCCTAAATGATCACAATTGT+AGG + chr5_1:5730369-5730388 Msa0713550:exon 30.0%
ACCTACAATTGTGATCATTT+AGG - chr5_1:5730373-5730392 None:intergenic 30.0%
! TAAATACAACTAGAAGTGCA+TGG - chr5_1:5730545-5730564 None:intergenic 30.0%
GAAAATAAATTTGTCAGGTG+AGG + chr5_1:5730576-5730595 Msa0713550:three_prime_UTR 30.0%
!! AGAAGAAGATGATGGGATTA+TGG - chr5_1:5727113-5727132 None:intergenic 35.0%
GATGATGAAGAAGAAGATGA+TGG - chr5_1:5727121-5727140 None:intergenic 35.0%
! AAATTCTCGGAGTTTTCAGA+TGG + chr5_1:5727481-5727500 Msa0713550:CDS 35.0%
! AATTCTCGGAGTTTTCAGAT+GGG + chr5_1:5727482-5727501 Msa0713550:CDS 35.0%
!! TGAATGGTGTTATTGCTAAG+AGG + chr5_1:5727530-5727549 Msa0713550:CDS 35.0%
!! GAATGGTGTTATTGCTAAGA+GGG + chr5_1:5727531-5727550 Msa0713550:CDS 35.0%
! TGTTATTGCTAAGAGGGTTT+TGG + chr5_1:5727537-5727556 Msa0713550:CDS 35.0%
! TTTGGAATTGGTATCTGGAT+TGG + chr5_1:5727555-5727574 Msa0713550:CDS 35.0%
GATACATAACCCAAATGAAC+CGG - chr5_1:5727670-5727689 None:intergenic 35.0%
AGATGTATATATCGAATCCG+AGG + chr5_1:5727719-5727738 Msa0713550:CDS 35.0%
GATGTATATATCGAATCCGA+GGG + chr5_1:5727720-5727739 Msa0713550:CDS 35.0%
GATATAGTTGAGGAGTTTGA+AGG + chr5_1:5727775-5727794 Msa0713550:CDS 35.0%
!! GACTACTTCTTTGATAACGA+AGG + chr5_1:5728175-5728194 Msa0713550:intron 35.0%
!! CTACTTCTTTGATAACGAAG+GGG + chr5_1:5728177-5728196 Msa0713550:intron 35.0%
TTAGTATCTGGTAGAAGTAG+TGG + chr5_1:5728418-5728437 Msa0713550:intron 35.0%
! AGTGGCATCATTTTGTCATT+AGG + chr5_1:5728436-5728455 Msa0713550:intron 35.0%
GGCTAACTATATACAAAGGA+AGG + chr5_1:5728593-5728612 Msa0713550:intron 35.0%
!! TTTTTGAGAAGTTACGCAAG+AGG + chr5_1:5728740-5728759 Msa0713550:intron 35.0%
!! TTTTGAGAAGTTACGCAAGA+GGG + chr5_1:5728741-5728760 Msa0713550:intron 35.0%
TCATATCAAACAACTAGGTC+CGG + chr5_1:5728882-5728901 Msa0713550:CDS 35.0%
!! TCTTCACAGTAGTCTTGTAT+TGG + chr5_1:5728960-5728979 Msa0713550:CDS 35.0%
TCTTGTATTGGATCATCCAA+GGG + chr5_1:5728972-5728991 Msa0713550:CDS 35.0%
AATGCACTTATGAATCTGAC+GGG - chr5_1:5729004-5729023 None:intergenic 35.0%
CAATGCACTTATGAATCTGA+CGG - chr5_1:5729005-5729024 None:intergenic 35.0%
TCAGATTCATAAGTGCATTG+TGG + chr5_1:5729005-5729024 Msa0713550:CDS 35.0%
TTTGCACAACAATACAAGAG+TGG + chr5_1:5729089-5729108 Msa0713550:intron 35.0%
CTTCTTCGGTTCTTCATAAA+TGG - chr5_1:5729185-5729204 None:intergenic 35.0%
GCATTAATTATACTGGGAGT+AGG + chr5_1:5729369-5729388 Msa0713550:intron 35.0%
! ATAAGGTTTGTTTGGTGGTT+GGG - chr5_1:5729442-5729461 None:intergenic 35.0%
! TATAAGGTTTGTTTGGTGGT+TGG - chr5_1:5729443-5729462 None:intergenic 35.0%
! GGTATATAAGGTTTGTTTGG+TGG - chr5_1:5729447-5729466 None:intergenic 35.0%
CAAATGGGTGGTTAGATATA+GGG - chr5_1:5729693-5729712 None:intergenic 35.0%
TCAAATGGGTGGTTAGATAT+AGG - chr5_1:5729694-5729713 None:intergenic 35.0%
GCATCTCGTAATTTGAAAAG+GGG - chr5_1:5729742-5729761 None:intergenic 35.0%
AACAAAGGGAGGTTACATTA+AGG + chr5_1:5729930-5729949 Msa0713550:intron 35.0%
ACAAAGGGAGGTTACATTAA+GGG + chr5_1:5729931-5729950 Msa0713550:intron 35.0%
TTAACATTTACAGTTGCACG+AGG - chr5_1:5730124-5730143 None:intergenic 35.0%
! TCAGCAATGATTTGGAGATT+TGG - chr5_1:5730148-5730167 None:intergenic 35.0%
TTGATTCAGAAACAGCTAGA+AGG + chr5_1:5730245-5730264 Msa0713550:CDS 35.0%
TGATTCAGAAACAGCTAGAA+GGG + chr5_1:5730246-5730265 Msa0713550:CDS 35.0%
!! AGGGTTCTAATTTTTGCCTT+TGG + chr5_1:5730265-5730284 Msa0713550:CDS 35.0%
! GTTCTAATTTTTGCCTTTGG+AGG + chr5_1:5730268-5730287 Msa0713550:CDS 35.0%
!! TCTAATTTTTGCCTTTGGAG+GGG + chr5_1:5730270-5730289 Msa0713550:CDS 35.0%
ACTTCGTACTCTATCTCTAA+TGG - chr5_1:5730323-5730342 None:intergenic 35.0%
AGCTGACATAACATGTTTAC+AGG - chr5_1:5730404-5730423 None:intergenic 35.0%
! ACAAAATGAAGTGTCTACTC+CGG + chr5_1:5730489-5730508 Msa0713550:three_prime_UTR 35.0%
ATTATGGAGTTGAATGCTGC+GGG - chr5_1:5727097-5727116 None:intergenic 40.0%
GATTATGGAGTTGAATGCTG+CGG - chr5_1:5727098-5727117 None:intergenic 40.0%
!! GTTGAATGTGACTCTGGTTT+TGG - chr5_1:5727167-5727186 None:intergenic 40.0%
AAGAAGATTCTCGAAGACTG+TGG - chr5_1:5727273-5727292 None:intergenic 40.0%
AATCTCTTCTCTCTTCTCCA+TGG + chr5_1:5727296-5727315 Msa0713550:CDS 40.0%
! ATTCTCGGAGTTTTCAGATG+GGG + chr5_1:5727483-5727502 Msa0713550:CDS 40.0%
! TTTTCAGATGGGGTTTACGT+TGG + chr5_1:5727493-5727512 Msa0713550:CDS 40.0%
!!! TGCTAAGAGGGTTTTGGAAT+TGG + chr5_1:5727543-5727562 Msa0713550:CDS 40.0%
!!! AGGGTTTTGGAATTGGTATC+TGG + chr5_1:5727550-5727569 Msa0713550:CDS 40.0%
! GAATTGGTATCTGGATTGGA+CGG + chr5_1:5727559-5727578 Msa0713550:CDS 40.0%
! TGGACGGTGGAGATTTATTT+TGG + chr5_1:5727575-5727594 Msa0713550:CDS 40.0%
ACATAAACCACCGTCAAATC+CGG - chr5_1:5727622-5727641 None:intergenic 40.0%
TTTGACGGTGGTTTATGTAC+CGG + chr5_1:5727624-5727643 Msa0713550:CDS 40.0%
GTTGAAACTCCGGTTCATTT+GGG + chr5_1:5727658-5727677 Msa0713550:CDS 40.0%
TGTATCGTTGCAGAGTAGTA+AGG + chr5_1:5727684-5727703 Msa0713550:CDS 40.0%
! TATATCGAATCCGAGGGTTT+TGG + chr5_1:5727726-5727745 Msa0713550:CDS 40.0%
!! TGGTGAGGTTGATATAGTTG+AGG + chr5_1:5727765-5727784 Msa0713550:CDS 40.0%
!!! TTGGAGTAATGCTGTTTTGG+AGG + chr5_1:5727816-5727835 Msa0713550:CDS 40.0%
!!! CTGTTTTGGAGGTTGTGATT+GGG + chr5_1:5727827-5727846 Msa0713550:CDS 40.0%
!!! TGTTTTGGAGGTTGTGATTG+GGG + chr5_1:5727828-5727847 Msa0713550:CDS 40.0%
AGAAGTCCATTTGATATGCG+CGG - chr5_1:5727902-5727921 None:intergenic 40.0%
! AGTAGAGCTAAAAGCACAAC+GGG - chr5_1:5728298-5728317 None:intergenic 40.0%
! GAGTAGAGCTAAAAGCACAA+CGG - chr5_1:5728299-5728318 None:intergenic 40.0%
GCTCATATTCACCGATAAGT+GGG - chr5_1:5728345-5728364 None:intergenic 40.0%
AGCTCATATTCACCGATAAG+TGG - chr5_1:5728346-5728365 None:intergenic 40.0%
AAAGGAAGGGCAATCTAGTT+AGG + chr5_1:5728607-5728626 Msa0713550:intron 40.0%
AAGGGCAATCTAGTTAGGAT+AGG + chr5_1:5728612-5728631 Msa0713550:intron 40.0%
TTTGAGAAGTTACGCAAGAG+GGG + chr5_1:5728742-5728761 Msa0713550:intron 40.0%
TCAACTTTGCACTTGTCAGT+TGG + chr5_1:5728922-5728941 Msa0713550:CDS 40.0%
!! GTCAGTTGGTAATCAAACAC+AGG + chr5_1:5728936-5728955 Msa0713550:CDS 40.0%
GTCTTGTATTGGATCATCCA+AGG + chr5_1:5728971-5728990 Msa0713550:CDS 40.0%
CTTGTATTGGATCATCCAAG+GGG + chr5_1:5728973-5728992 Msa0713550:CDS 40.0%
! AGTTTTTGACGGAAACGTCA+AGG + chr5_1:5729047-5729066 Msa0713550:CDS 40.0%
GTATCAATCCATAGCAAGAC+AGG - chr5_1:5729288-5729307 None:intergenic 40.0%
! AGTTAAAGAGTGGAGTGCTA+AGG - chr5_1:5729412-5729431 None:intergenic 40.0%
! TAAGGTTTGTTTGGTGGTTG+GGG - chr5_1:5729441-5729460 None:intergenic 40.0%
! TGTGTTTCTGATGCTGATTG+AGG + chr5_1:5729597-5729616 Msa0713550:intron 40.0%
TGACGTCATCAGCAATGATT+TGG - chr5_1:5730156-5730175 None:intergenic 40.0%
GTGCTTGGAAATACAGAAGT+TGG - chr5_1:5730219-5730238 None:intergenic 40.0%
TCCGGCAATTGTAACAATTG+AGG + chr5_1:5730507-5730526 Msa0713550:three_prime_UTR 40.0%
GCCTCAATTGTTACAATTGC+CGG - chr5_1:5730511-5730530 None:intergenic 40.0%
TGCGTTGTTGAATGTGACTC+TGG - chr5_1:5727173-5727192 None:intergenic 45.0%
!! AGTCTTCTAAGGTTTCAGCG+AGG - chr5_1:5727228-5727247 None:intergenic 45.0%
!! AAGGGTTCGTGTTTTCGAGA+AGG - chr5_1:5727322-5727341 None:intergenic 45.0%
GAGAAGTCGTTGAAGCGAAA+GGG - chr5_1:5727340-5727359 None:intergenic 45.0%
GATTAATGGAATGGGTGCAC+CGG + chr5_1:5727600-5727619 Msa0713550:CDS 45.0%
GGTTGAAACTCCGGTTCATT+TGG + chr5_1:5727657-5727676 Msa0713550:CDS 45.0%
TCGTTGCAGAGTAGTAAGGA+AGG + chr5_1:5727688-5727707 Msa0713550:CDS 45.0%
!!! GCTGTTTTGGAGGTTGTGAT+TGG + chr5_1:5727826-5727845 Msa0713550:CDS 45.0%
! CAAATGGACTTCTGTTCGTC+AGG + chr5_1:5727909-5727928 Msa0713550:CDS 45.0%
! AAAAGCACAACGGGCATAGT+GGG - chr5_1:5728289-5728308 None:intergenic 45.0%
! TAAAAGCACAACGGGCATAG+TGG - chr5_1:5728290-5728309 None:intergenic 45.0%
CAAGTGATTCCATTAGGTCC+AGG - chr5_1:5728387-5728406 None:intergenic 45.0%
GAGCTTACAGAAGTAAGCAC+AGG + chr5_1:5728835-5728854 Msa0713550:CDS 45.0%
CTTACAGAAGTAAGCACAGG+AGG + chr5_1:5728838-5728857 Msa0713550:CDS 45.0%
GATAACTCTGTCACTGTGTC+CGG - chr5_1:5728904-5728923 None:intergenic 45.0%
TGCATTGTGGCTCATTCACA+GGG + chr5_1:5729018-5729037 Msa0713550:CDS 45.0%
! CAGGGACAAGCAGTTTTTGA+CGG + chr5_1:5729036-5729055 Msa0713550:CDS 45.0%
ACGGAAACGTCAAGGTTAAC+AGG + chr5_1:5729055-5729074 Msa0713550:CDS 45.0%
! TAAAGAGTGGAGTGCTAAGG+AGG - chr5_1:5729409-5729428 None:intergenic 45.0%
TGGTTAGATATAGGGACGGA+GGG - chr5_1:5729685-5729704 None:intergenic 45.0%
TGGGTGGTTAGATATAGGGA+CGG - chr5_1:5729689-5729708 None:intergenic 45.0%
AGGGAGGTTACATTAAGGGA+CGG + chr5_1:5729935-5729954 Msa0713550:intron 45.0%
AGGTTACATTAAGGGACGGA+GGG + chr5_1:5729939-5729958 Msa0713550:intron 45.0%
TTGCACGAGGTTCAAGAAGA+AGG - chr5_1:5730111-5730130 None:intergenic 45.0%
GTCACTTATTGCAGCTCCAT+GGG - chr5_1:5730185-5730204 None:intergenic 45.0%
!! ACAGAAGTTGGCTTTGTTCC+AGG - chr5_1:5730207-5730226 None:intergenic 45.0%
CTTCTGTATTTCCAAGCACG+TGG + chr5_1:5730220-5730239 Msa0713550:CDS 45.0%
ATCTATCACTTCCCCTCCAA+AGG - chr5_1:5730284-5730303 None:intergenic 45.0%
! CAACTAGAAGTGCATGGTGA+TGG - chr5_1:5730539-5730558 None:intergenic 45.0%
CAGCGAGGTCGAGAATGAAT+GGG - chr5_1:5727213-5727232 None:intergenic 50.0%
TCAGCGAGGTCGAGAATGAA+TGG - chr5_1:5727214-5727233 None:intergenic 50.0%
TGTAGGGACGGAGTCTTCTA+AGG - chr5_1:5727239-5727258 None:intergenic 50.0%
TGTGGAGAGGTTGTGGTGTA+GGG - chr5_1:5727255-5727274 None:intergenic 50.0%
GATTCTCGAAGACTGTGGAG+AGG - chr5_1:5727268-5727287 None:intergenic 50.0%
!! TCGTGTTTTCGAGAAGGCCA+TGG - chr5_1:5727316-5727335 None:intergenic 50.0%
GGAGAAGTCGTTGAAGCGAA+AGG - chr5_1:5727341-5727360 None:intergenic 50.0%
! TTGGTATCTGGATTGGACGG+TGG + chr5_1:5727562-5727581 Msa0713550:CDS 50.0%
AATGGGTGCACCGGATTTGA+CGG + chr5_1:5727609-5727628 Msa0713550:CDS 50.0%
ACGGTGGTTTATGTACCGGA+GGG + chr5_1:5727628-5727647 Msa0713550:CDS 50.0%
!! TTATGTACCGGAGGGTGTTC+AGG + chr5_1:5727636-5727655 Msa0713550:CDS 50.0%
GTTTCAACCTGAACACCCTC+CGG - chr5_1:5727646-5727665 None:intergenic 50.0%
!! GGGTGTTCAGGTTGAAACTC+CGG + chr5_1:5727648-5727667 Msa0713550:CDS 50.0%
!! ATCGAATCCGAGGGTTTTGG+TGG + chr5_1:5727729-5727748 Msa0713550:CDS 50.0%
!!! GTTTTGGTGGTGGTGGAGAA+TGG + chr5_1:5727742-5727761 Msa0713550:CDS 50.0%
TTGGAGGTTGTGATTGGGGA+AGG + chr5_1:5727832-5727851 Msa0713550:CDS 50.0%
TGCTTGCCGCGCATATCAAA+TGG + chr5_1:5727893-5727912 Msa0713550:CDS 50.0%
AAAGCACAACGGGCATAGTG+GGG - chr5_1:5728288-5728307 None:intergenic 50.0%
AATCGCTCGTGCATAGCAGA+GGG - chr5_1:5728321-5728340 None:intergenic 50.0%
ACGAGCGATTGCCCACTTAT+CGG + chr5_1:5728331-5728350 Msa0713550:intron 50.0%
GTACACAACCAGTCACTACC+TGG + chr5_1:5728366-5728385 Msa0713550:intron 50.0%
CATTAGGTCCAGGTAGTGAC+TGG - chr5_1:5728377-5728396 None:intergenic 50.0%
CAGTCACTACCTGGACCTAA+TGG + chr5_1:5728375-5728394 Msa0713550:intron 50.0%
GTAAGCACAGGAGGCAAACT+TGG + chr5_1:5728847-5728866 Msa0713550:CDS 50.0%
ATCTGACGGGAATAACCCCT+TGG - chr5_1:5728991-5729010 None:intergenic 50.0%
GTGCATTGTGGCTCATTCAC+AGG + chr5_1:5729017-5729036 Msa0713550:CDS 50.0%
! AGTGGAGTGCTAAGGAGGTT+GGG - chr5_1:5729404-5729423 None:intergenic 50.0%
! TTTGTTTGGTGGTTGGGGTG+GGG - chr5_1:5729436-5729455 None:intergenic 50.0%
! GTTTGTTTGGTGGTTGGGGT+GGG - chr5_1:5729437-5729456 None:intergenic 50.0%
GTGGTTAGATATAGGGACGG+AGG - chr5_1:5729686-5729705 None:intergenic 50.0%
GAGGTTACATTAAGGGACGG+AGG + chr5_1:5729938-5729957 Msa0713550:intron 50.0%
TATGCTCAGCAGACAGATGC+TGG + chr5_1:5730070-5730089 Msa0713550:CDS 50.0%
GATGACGTCAAGTGTTCCCA+TGG + chr5_1:5730166-5730185 Msa0713550:CDS 50.0%
GGTCACTTATTGCAGCTCCA+TGG - chr5_1:5730186-5730205 None:intergenic 50.0%
TGGAGCTGCAATAAGTGACC+TGG + chr5_1:5730186-5730205 Msa0713550:CDS 50.0%
CTGAATCAATGCCACGTGCT+TGG - chr5_1:5730234-5730253 None:intergenic 50.0%
GGACTCGCAGTTGTGTATGT+AGG + chr5_1:5730619-5730638 Msa0713550:three_prime_UTR 50.0%
GAGAGGTTGTGGTGTAGGGA+CGG - chr5_1:5727251-5727270 None:intergenic 55.0%
CTGTGGAGAGGTTGTGGTGT+AGG - chr5_1:5727256-5727275 None:intergenic 55.0%
CGAAGACTGTGGAGAGGTTG+TGG - chr5_1:5727262-5727281 None:intergenic 55.0%
! GATTTGGGATGAGCGGAGGA+AGG - chr5_1:5727362-5727381 None:intergenic 55.0%
!! TGGTGGTGGTGGTTGGGATT+GGG - chr5_1:5727393-5727412 None:intergenic 55.0%
ACGTGGCAGGGGAATTGATC+GGG - chr5_1:5727424-5727443 None:intergenic 55.0%
GACGTGGCAGGGGAATTGAT+CGG - chr5_1:5727425-5727444 None:intergenic 55.0%
TCAACGATGCTGACGTGGCA+GGG - chr5_1:5727436-5727455 None:intergenic 55.0%
TGCCACGTCAGCATCGTTGA+CGG + chr5_1:5727436-5727455 Msa0713550:CDS 55.0%
GACGGTGGTTTATGTACCGG+AGG + chr5_1:5727627-5727646 Msa0713550:CDS 55.0%
!! GAATCCGAGGGTTTTGGTGG+TGG + chr5_1:5727732-5727751 Msa0713550:CDS 55.0%
TCCACCACCACCAAAACCCT+CGG - chr5_1:5727739-5727758 None:intergenic 55.0%
!! TTGGTGGTGGTGGAGAATGG+TGG + chr5_1:5727745-5727764 Msa0713550:CDS 55.0%
GAGGTTGTGATTGGGGAAGG+TGG + chr5_1:5727835-5727854 Msa0713550:CDS 55.0%
TGTGATTGGGGAAGGTGGCA+AGG + chr5_1:5727840-5727859 Msa0713550:CDS 55.0%
CAATCGCTCGTGCATAGCAG+AGG - chr5_1:5728322-5728341 None:intergenic 55.0%
GCACAGGAGGCAAACTTGGA+AGG + chr5_1:5728851-5728870 Msa0713550:CDS 55.0%
! GAGTGGAGTGCTAAGGAGGT+TGG - chr5_1:5729405-5729424 None:intergenic 55.0%
GGGGTGGGGAAGTTAAAGAG+TGG - chr5_1:5729422-5729441 None:intergenic 55.0%
! GGTTTGTTTGGTGGTTGGGG+TGG - chr5_1:5729438-5729457 None:intergenic 55.0%
! GGAGGATTTGGGATGAGCGG+AGG - chr5_1:5727366-5727385 None:intergenic 60.0%
! CGGGGAGGATTTGGGATGAG+CGG - chr5_1:5727369-5727388 None:intergenic 60.0%
GATTGGGGCGGGGAGGATTT+GGG - chr5_1:5727377-5727396 None:intergenic 60.0%
!! GGTGGTGGTGGTTGGGATTG+GGG - chr5_1:5727392-5727411 None:intergenic 60.0%
!! GTGGTGGTGGTGGTTGGGAT+TGG - chr5_1:5727394-5727413 None:intergenic 60.0%
GTGGCAGGGGAATTGATCGG+GGG - chr5_1:5727422-5727441 None:intergenic 60.0%
CGTGGCAGGGGAATTGATCG+GGG - chr5_1:5727423-5727442 None:intergenic 60.0%
CAACGATGCTGACGTGGCAG+GGG - chr5_1:5727435-5727454 None:intergenic 60.0%
GTCAACGATGCTGACGTGGC+AGG - chr5_1:5727437-5727456 None:intergenic 60.0%
GACCGTCAACGATGCTGACG+TGG - chr5_1:5727441-5727460 None:intergenic 60.0%
!!! TCCGAGGGTTTTGGTGGTGG+TGG + chr5_1:5727735-5727754 Msa0713550:CDS 60.0%
!! GGTGGTGGAGAATGGTGGTG+AGG + chr5_1:5727750-5727769 Msa0713550:CDS 60.0%
GGATTGGGGCGGGGAGGATT+TGG - chr5_1:5727378-5727397 None:intergenic 65.0%
TGGTGGTTGGGATTGGGGCG+GGG - chr5_1:5727387-5727406 None:intergenic 65.0%
GTGGTGGTTGGGATTGGGGC+GGG - chr5_1:5727388-5727407 None:intergenic 65.0%
! GGTGGTGGTTGGGATTGGGG+CGG - chr5_1:5727389-5727408 None:intergenic 65.0%
!! CGGTGGTGGTGGTGGTGGTT+GGG - chr5_1:5727399-5727418 None:intergenic 65.0%
GAATTGATCGGGGGCGGTGG+TGG - chr5_1:5727413-5727432 None:intergenic 65.0%
GCAGGGGAATTGATCGGGGG+CGG - chr5_1:5727419-5727438 None:intergenic 65.0%
GGGTGCACCGGATTTGACGG+TGG + chr5_1:5727612-5727631 Msa0713550:CDS 65.0%
TGGTTGGGATTGGGGCGGGG+AGG - chr5_1:5727384-5727403 None:intergenic 70.0%
!! GCGGTGGTGGTGGTGGTGGT+TGG - chr5_1:5727400-5727419 None:intergenic 70.0%
! TTGATCGGGGGCGGTGGTGG+TGG - chr5_1:5727410-5727429 None:intergenic 70.0%
GGGGAATTGATCGGGGGCGG+TGG - chr5_1:5727416-5727435 None:intergenic 70.0%
!! ATCGGGGGCGGTGGTGGTGG+TGG - chr5_1:5727407-5727426 None:intergenic 75.0%
!!! GGGGGCGGTGGTGGTGGTGG+TGG - chr5_1:5727404-5727423 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 5727066 5730692 5727066 ID=Msa0713550;Name=Msa0713550
chr5_1 mRNA 5727066 5730692 5727066 ID=Msa0713550-mRNA-1;Parent=Msa0713550;Name=Msa0713550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=7|1|1|1|1|1|3|314|475
chr5_1 exon 5727066 5727930 5727066 ID=Msa0713550-mRNA-1:exon:2499;Parent=Msa0713550-mRNA-1
chr5_1 exon 5728817 5729076 5728817 ID=Msa0713550-mRNA-1:exon:2500;Parent=Msa0713550-mRNA-1
chr5_1 exon 5730069 5730692 5730069 ID=Msa0713550-mRNA-1:exon:2501;Parent=Msa0713550-mRNA-1
chr5_1 five_prime_UTR 5727066 5727072 5727066 ID=Msa0713550-mRNA-1:five_prime_utr;Parent=Msa0713550-mRNA-1
chr5_1 CDS 5727073 5727930 5727073 ID=Msa0713550-mRNA-1:cds;Parent=Msa0713550-mRNA-1
chr5_1 CDS 5728817 5729076 5728817 ID=Msa0713550-mRNA-1:cds;Parent=Msa0713550-mRNA-1
chr5_1 CDS 5730069 5730378 5730069 ID=Msa0713550-mRNA-1:cds;Parent=Msa0713550-mRNA-1
chr5_1 three_prime_UTR 5730379 5730692 5730379 ID=Msa0713550-mRNA-1:three_prime_utr;Parent=Msa0713550-mRNA-1
Gene Sequence

>Msa0713550

ATGAGTGGCATAGCATTAACACCCGCAGCATTCAACTCCATAATCCCATCATCTTCTTCTTCATCATCGAAATCTCAAAAACTCATCAGAACCAAAACCAGAGTCACATTCAACAACGCAATTTCAATCTCTTCAGACCCATTCATTCTCGACCTCGCTGAAACCTTAGAAGACTCCGTCCCTACACCACAACCTCTCCACAGTCTTCGAGAATCTTCTTCTCAATCTCTTCTCTCTTCTCCATGGCCTTCTCGAAAACACGAACCCTTTCGCTTCAACGACTTCTCCTTCCTCCGCTCATCCCAAATCCTCCCCGCCCCAATCCCAACCACCACCACCACCACCGCCCCCGATCAATTCCCCTGCCACGTCAGCATCGTTGACGGTCACTTCATACAATCAACTTCAAAATTCTCGGAGTTTTCAGATGGGGTTTACGTTGGTAATTTGTCAAAATTGAATGGTGTTATTGCTAAGAGGGTTTTGGAATTGGTATCTGGATTGGACGGTGGAGATTTATTTTGGTCGATTAATGGAATGGGTGCACCGGATTTGACGGTGGTTTATGTACCGGAGGGTGTTCAGGTTGAAACTCCGGTTCATTTGGGTTATGTATCGTTGCAGAGTAGTAAGGAAGGTTTGAATGAGATGTATATATCGAATCCGAGGGTTTTGGTGGTGGTGGAGAATGGTGGTGAGGTTGATATAGTTGAGGAGTTTGAAGGGAATGATAATGAGTGTTATTGGAGTAATGCTGTTTTGGAGGTTGTGATTGGGGAAGGTGGCAAGGTTAGACATTCTTATGTTCAGAATCAGTCGTTGCTTGCCGCGCATATCAAATGGACTTCTGTTCGTCAGGAAGCATCTAGTACATATGAGCTTACAGAAGTAAGCACAGGAGGCAAACTTGGAAGGCACAATCTTCATATCAAACAACTAGGTCCGGACACAGTGACAGAGTTATCAACTTTGCACTTGTCAGTTGGTAATCAAACACAGGATCTTCACAGTAGTCTTGTATTGGATCATCCAAGGGGTTATTCCCGTCAGATTCATAAGTGCATTGTGGCTCATTCACAGGGACAAGCAGTTTTTGACGGAAACGTCAAGGTTAACAGGTATGCTCAGCAGACAGATGCTGGACAGTTATCAAGAAGCCTTCTTCTTGAACCTCGTGCAACTGTAAATGTTAAACCAAATCTCCAAATCATTGCTGATGACGTCAAGTGTTCCCATGGAGCTGCAATAAGTGACCTGGAACAAAGCCAACTTCTGTATTTCCAAGCACGTGGCATTGATTCAGAAACAGCTAGAAGGGTTCTAATTTTTGCCTTTGGAGGGGAAGTGATAGATAAGTTTCCTAATTCTTCCATTAGAGATAGAGTACGAAGTCAGATTAAAAGTTTATTGGATCCATCTCCTAAATGA

Protein sequence

>Msa0713550

MSGIALTPAAFNSIIPSSSSSSSKSQKLIRTKTRVTFNNAISISSDPFILDLAETLEDSVPTPQPLHSLRESSSQSLLSSPWPSRKHEPFRFNDFSFLRSSQILPAPIPTTTTTTAPDQFPCHVSIVDGHFIQSTSKFSEFSDGVYVGNLSKLNGVIAKRVLELVSGLDGGDLFWSINGMGAPDLTVVYVPEGVQVETPVHLGYVSLQSSKEGLNEMYISNPRVLVVVENGGEVDIVEEFEGNDNECYWSNAVLEVVIGEGGKVRHSYVQNQSLLAAHIKWTSVRQEASSTYELTEVSTGGKLGRHNLHIKQLGPDTVTELSTLHLSVGNQTQDLHSSLVLDHPRGYSRQIHKCIVAHSQGQAVFDGNVKVNRYAQQTDAGQLSRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEQSQLLYFQARGIDSETARRVLIFAFGGEVIDKFPNSSIRDRVRSQIKSLLDPSPK*