AlfalfaGEDB | Msa0713550

M. sativa cultivar zhongmu-4 / Msa0713550

KEGG: K09015
GO: GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0016226 GO:0022414 GO:0022607 GO:0031163 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0061024 GO:0061458 GO:0071840
PFAM: PF01458.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713550	XP_003611469.1	95.368	475	21	1	1	475	1	474	0.0	888

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713550	sp\|Q9LQK7\|AB7I_ARATH	58.672	467	182	5	13	470	11	475	0.0	542

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713550	G7JZX3	95.368	475	21	1	1	475	1	474	0.0	888

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0713550	0.826227	3.044836e-54	-8.615850e-47
Msa0001460	Msa0713550	0.829730	4.369919e-55	-8.615850e-47
Msa0001540	Msa0713550	0.806900	6.571891e-50	-8.615850e-47
Msa0002060	Msa0713550	0.821382	4.160207e-53	-8.615850e-47
Msa0003470	Msa0713550	0.842290	2.830442e-58	-8.615850e-47
Msa0007450	Msa0713550	0.802662	5.043077e-49	-8.615850e-47
Msa0008850	Msa0713550	0.820378	7.078730e-53	-8.615850e-47
Msa0009210	Msa0713550	0.821995	3.001356e-53	-8.615850e-47
Msa0012460	Msa0713550	0.881244	2.820261e-70	-8.615850e-47
Msa0016110	Msa0713550	0.818559	1.840165e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713550	MtrunA17_Chr5g0400451	95.368	475	21	1	1	475	1	474	0.0	888
Msa0713550	MtrunA17_Chr8g0343421	25.559	313	201	9	172	470	243	537	6.38e-18	86.7
Msa0713550	MtrunA17_Chr7g0229961	25.240	313	202	9	172	470	244	538	1.18e-17	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713550	AT1G32500.1	58.672	467	182	5	13	470	11	475	0.0	542
Msa0713550	AT4G04770.1	26.263	297	194	7	172	455	254	538	2.79e-19	91.3

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Find 133 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGATTCTCGAAGACTG+TGG	0.639780	5_1:-5727270	None:intergenic
AAGTCAGATTAAAAGTTTAT+TGG	0.227386	5_1:+5730339	Msa0713550:CDS
AATCTCTTCTCTCTTCTCCA+TGG	0.503098	5_1:+5727296	Msa0713550:CDS
AATCTTCATATCAAACAACT+AGG	0.623363	5_1:+5728877	Msa0713550:CDS
AATGCACTTATGAATCTGAC+GGG	0.586814	5_1:-5729001	None:intergenic
AATGGGTGCACCGGATTTGA+CGG	0.505675	5_1:+5727609	Msa0713550:CDS
AATTGTGATCATTTAGGAGA+TGG	0.509008	5_1:-5730364	None:intergenic
ACAAAATGAAGTGTCTACTC+CGG	0.588350	5_1:+5730489	Msa0713550:three_prime_UTR
ACAATCAACTTCAAAATTCT+CGG	0.395737	5_1:+5727468	Msa0713550:CDS
ACAGAAGTTGGCTTTGTTCC+AGG	0.315039	5_1:-5730204	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGATGAAGAAGAAGATGAT+GGG	-	chr5_1:5727120-5727139	None:intergenic	30.0%
ATATAGTTGAGGAGTTTGAA+GGG	+	chr5_1:5727776-5727795	Msa0713550:CDS	30.0%
ATGGAATGAAAAGGTTATGT+TGG	+	chr5_1:5728088-5728107	Msa0713550:intron	30.0%
AATAGTAAAACTGGGTCTAA+AGG	+	chr5_1:5728111-5728130	Msa0713550:intron	30.0%
GTTATCAAAGAAGTAGTCAT+AGG	-	chr5_1:5728173-5728192	None:intergenic	30.0%
GTGTTATAGGTATAATGTTG+CGG	+	chr5_1:5728233-5728252	Msa0713550:intron	30.0%
AAATTGCAAGTGATTCCATT+AGG	-	chr5_1:5728393-5728412	None:intergenic	30.0%
GCTAACTATATACAAAGGAA+GGG	+	chr5_1:5728594-5728613	Msa0713550:intron	30.0%
CACACGAAATGCAAAAATAA+AGG	-	chr5_1:5728659-5728678	None:intergenic	30.0%
TACAATTGTAAGGACTTCTT+CGG	-	chr5_1:5729199-5729218	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	5727066	5730692	5727066	ID=Msa0713550;Name=Msa0713550
chr5_1	mRNA	5727066	5730692	5727066	ID=Msa0713550-mRNA-1;Parent=Msa0713550;Name=Msa0713550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=7\|1\|1\|1\|1\|1\|3\|314\|475
chr5_1	exon	5727066	5727930	5727066	ID=Msa0713550-mRNA-1:exon:2499;Parent=Msa0713550-mRNA-1
chr5_1	exon	5728817	5729076	5728817	ID=Msa0713550-mRNA-1:exon:2500;Parent=Msa0713550-mRNA-1
chr5_1	exon	5730069	5730692	5730069	ID=Msa0713550-mRNA-1:exon:2501;Parent=Msa0713550-mRNA-1
chr5_1	five_prime_UTR	5727066	5727072	5727066	ID=Msa0713550-mRNA-1:five_prime_utr;Parent=Msa0713550-mRNA-1
chr5_1	CDS	5727073	5727930	5727073	ID=Msa0713550-mRNA-1:cds;Parent=Msa0713550-mRNA-1
chr5_1	CDS	5728817	5729076	5728817	ID=Msa0713550-mRNA-1:cds;Parent=Msa0713550-mRNA-1
chr5_1	CDS	5730069	5730378	5730069	ID=Msa0713550-mRNA-1:cds;Parent=Msa0713550-mRNA-1
chr5_1	three_prime_UTR	5730379	5730692	5730379	ID=Msa0713550-mRNA-1:three_prime_utr;Parent=Msa0713550-mRNA-1

Gene Sequence

>Msa0713550

ATGAGTGGCATAGCATTAACACCCGCAGCATTCAACTCCATAATCCCATCATCTTCTTCTTCATCATCGAAATCTCAAAAACTCATCAGAACCAAAACCAGAGTCACATTCAACAACGCAATTTCAATCTCTTCAGACCCATTCATTCTCGACCTCGCTGAAACCTTAGAAGACTCCGTCCCTACACCACAACCTCTCCACAGTCTTCGAGAATCTTCTTCTCAATCTCTTCTCTCTTCTCCATGGCCTTCTCGAAAACACGAACCCTTTCGCTTCAACGACTTCTCCTTCCTCCGCTCATCCCAAATCCTCCCCGCCCCAATCCCAACCACCACCACCACCACCGCCCCCGATCAATTCCCCTGCCACGTCAGCATCGTTGACGGTCACTTCATACAATCAACTTCAAAATTCTCGGAGTTTTCAGATGGGGTTTACGTTGGTAATTTGTCAAAATTGAATGGTGTTATTGCTAAGAGGGTTTTGGAATTGGTATCTGGATTGGACGGTGGAGATTTATTTTGGTCGATTAATGGAATGGGTGCACCGGATTTGACGGTGGTTTATGTACCGGAGGGTGTTCAGGTTGAAACTCCGGTTCATTTGGGTTATGTATCGTTGCAGAGTAGTAAGGAAGGTTTGAATGAGATGTATATATCGAATCCGAGGGTTTTGGTGGTGGTGGAGAATGGTGGTGAGGTTGATATAGTTGAGGAGTTTGAAGGGAATGATAATGAGTGTTATTGGAGTAATGCTGTTTTGGAGGTTGTGATTGGGGAAGGTGGCAAGGTTAGACATTCTTATGTTCAGAATCAGTCGTTGCTTGCCGCGCATATCAAATGGACTTCTGTTCGTCAGGAAGCATCTAGTACATATGAGCTTACAGAAGTAAGCACAGGAGGCAAACTTGGAAGGCACAATCTTCATATCAAACAACTAGGTCCGGACACAGTGACAGAGTTATCAACTTTGCACTTGTCAGTTGGTAATCAAACACAGGATCTTCACAGTAGTCTTGTATTGGATCATCCAAGGGGTTATTCCCGTCAGATTCATAAGTGCATTGTGGCTCATTCACAGGGACAAGCAGTTTTTGACGGAAACGTCAAGGTTAACAGGTATGCTCAGCAGACAGATGCTGGACAGTTATCAAGAAGCCTTCTTCTTGAACCTCGTGCAACTGTAAATGTTAAACCAAATCTCCAAATCATTGCTGATGACGTCAAGTGTTCCCATGGAGCTGCAATAAGTGACCTGGAACAAAGCCAACTTCTGTATTTCCAAGCACGTGGCATTGATTCAGAAACAGCTAGAAGGGTTCTAATTTTTGCCTTTGGAGGGGAAGTGATAGATAAGTTTCCTAATTCTTCCATTAGAGATAGAGTACGAAGTCAGATTAAAAGTTTATTGGATCCATCTCCTAAATGA

Protein sequence

>Msa0713550

MSGIALTPAAFNSIIPSSSSSSSKSQKLIRTKTRVTFNNAISISSDPFILDLAETLEDSVPTPQPLHSLRESSSQSLLSSPWPSRKHEPFRFNDFSFLRSSQILPAPIPTTTTTTAPDQFPCHVSIVDGHFIQSTSKFSEFSDGVYVGNLSKLNGVIAKRVLELVSGLDGGDLFWSINGMGAPDLTVVYVPEGVQVETPVHLGYVSLQSSKEGLNEMYISNPRVLVVVENGGEVDIVEEFEGNDNECYWSNAVLEVVIGEGGKVRHSYVQNQSLLAAHIKWTSVRQEASSTYELTEVSTGGKLGRHNLHIKQLGPDTVTELSTLHLSVGNQTQDLHSSLVLDHPRGYSRQIHKCIVAHSQGQAVFDGNVKVNRYAQQTDAGQLSRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEQSQLLYFQARGIDSETARRVLIFAFGGEVIDKFPNSSIRDRVRSQIKSLLDPSPK*