AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1021600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021600 MtrunA17_Chr7g0237811 94.828 174 9 0 1 174 1 174 3.71e-111 313
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021600 AT4G13220.1 57.616 151 57 4 29 174 28 176 3.98e-50 159

Find 50 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTACAGCTTTCTTTATTT+TGG 0.099548 7_1:-46094834 Msa1021600:intron
GCACCCTGAGGCTTTGTTAA+AGG 0.218482 7_1:+46093773 None:intergenic
CTTTAACTTCAAAACCGAAT+TGG 0.273391 7_1:+46097010 None:intergenic
GTTACTGAAATCCTTGCTAT+TGG 0.328579 7_1:+46094902 None:intergenic
TTTAACTTCAAAACCGAATT+GGG 0.351112 7_1:+46097011 None:intergenic
TCAATTTCGTTCACCCAATT+CGG 0.375040 7_1:-46097024 Msa1021600:CDS
ATCCTTTGGAAGAGGCTAAT+AGG 0.388720 7_1:-46093995 Msa1021600:CDS
CTTGATCTTTATTGAATGCT+AGG 0.393502 7_1:+46094063 None:intergenic
GAAATCTTGAATTGAGTGTT+TGG 0.402184 7_1:+46096972 None:intergenic
GAAATCCTTGCTATTGGTCT+TGG 0.422289 7_1:+46094908 None:intergenic
ATGTATAATATGAAATTGAT+TGG 0.437639 7_1:+46093926 None:intergenic
CAAAGGATCATCCATAGGTT+TGG 0.442636 7_1:+46094010 None:intergenic
CAAACCTATGGATGATCCTT+TGG 0.442745 7_1:-46094009 Msa1021600:CDS
GGAAGAGGCTAATAGGATAA+TGG 0.446378 7_1:-46093988 Msa1021600:CDS
ATAGCCTTTAACAAAGCCTC+AGG 0.448382 7_1:-46093777 Msa1021600:three_prime_UTR
TTGCTTTCAAAATCGAAACT+TGG 0.450223 7_1:-46097060 Msa1021600:CDS
GCATGGAGAGTTGGTAAGGA+TGG 0.452265 7_1:-46095267 Msa1021600:CDS
CAAGAACCACCTAGCGGGAA+TGG 0.467436 7_1:-46094044 Msa1021600:CDS
CAAAACAAACTTTGACAGAA+TGG 0.481504 7_1:-46093849 Msa1021600:three_prime_UTR
GAACAATCGAATTTATCTAA+AGG 0.487407 7_1:-46096909 Msa1021600:intron
AACACAGGAGAACAAACATT+AGG 0.513207 7_1:+46097223 None:intergenic
GTTTGTTCATAGGCTACCAT+AGG 0.522734 7_1:-46094104 Msa1021600:intron
CTGCAGAATGCATGGAGAGT+TGG 0.536539 7_1:-46095276 Msa1021600:CDS
TGGGTGAACGAAATTGATGA+TGG 0.537607 7_1:+46097030 None:intergenic
AGGAACTACGACCAAACCTA+TGG 0.545163 7_1:-46094021 Msa1021600:CDS
GGTAAGGATGGAATTGATGC+AGG 0.549168 7_1:-46095255 Msa1021600:CDS
TGCAAAGTATGCAAGTCCTA+TGG 0.552339 7_1:+46094088 None:intergenic
GGTGCACCTGGGAATGGAAG+AGG 0.555504 7_1:+46097186 None:intergenic
AGATAGTTCTGCAGAATGCA+TGG 0.555735 7_1:-46095284 Msa1021600:intron
AAGATCAAGAACCACCTAGC+GGG 0.560815 7_1:-46094049 Msa1021600:CDS
ATCCTATTAGCCTCTTCCAA+AGG 0.564567 7_1:+46093993 None:intergenic
TATGGATGATCCTTTGGAAG+AGG 0.564870 7_1:-46094003 Msa1021600:CDS
AAAGTTGTGAACAAAACCAT+TGG 0.570596 7_1:+46097097 None:intergenic
GTAGTTCCTCCATTCCCGCT+AGG 0.572693 7_1:+46094035 None:intergenic
ACTATACCTCTTCCATTCCC+AGG 0.573599 7_1:-46097192 Msa1021600:five_prime_UTR
TCTTCCAAAGGATCATCCAT+AGG 0.581655 7_1:+46094005 None:intergenic
CTGCTCGTTCCAAGCACCCG+TGG 0.596725 7_1:+46093581 None:intergenic
GAACGAAATTGATGATGGGT+AGG 0.599016 7_1:+46097035 None:intergenic
TCGCTTTGTTTAGTTATGTG+TGG 0.600291 7_1:-46093685 Msa1021600:three_prime_UTR
GAATGCATGGAGAGTTGGTA+AGG 0.601699 7_1:-46095271 Msa1021600:CDS
AAATAAAGAAAGCTGTAGAG+AGG 0.616626 7_1:+46094837 None:intergenic
GTTCCTCCATTCCCGCTAGG+TGG 0.621366 7_1:+46094038 None:intergenic
GAACCACCTAGCGGGAATGG+AGG 0.633606 7_1:-46094041 Msa1021600:CDS
CTGTACCAAGACCAATAGCA+AGG 0.633937 7_1:-46094913 Msa1021600:CDS
GGGTGAACGAAATTGATGAT+GGG 0.652854 7_1:+46097031 None:intergenic
GTATAGTATGAATGAAACAC+AGG 0.662732 7_1:+46097208 None:intergenic
TAGCCTTTAACAAAGCCTCA+GGG 0.671889 7_1:-46093776 Msa1021600:three_prime_UTR
AAAACTACGAAATTGGAGCG+AGG 0.691122 7_1:+46096936 None:intergenic
AAAATGTCATTTGCACCCTG+AGG 0.693528 7_1:+46093761 None:intergenic
AAAGATCAAGAACCACCTAG+CGG 0.725332 7_1:-46094050 Msa1021600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTCATAAATTTGTAA+AGG - chr7_1:46094264-46094283 Msa1021600:intron 10.0%
!!! TTTTAATATGATATGAAAAA+TGG + chr7_1:46096020-46096039 None:intergenic 10.0%
!! TAAACAATTAATGAAAATTG+AGG + chr7_1:46093941-46093960 None:intergenic 15.0%
!!! TGTTTATAAACAAGTTATTT+TGG - chr7_1:46093955-46093974 Msa1021600:exon 15.0%
!! TATTTAAGTAAAGAATAGTT+TGG - chr7_1:46094170-46094189 Msa1021600:intron 15.0%
!!! TTCATTTTTTATTATCTTTG+TGG - chr7_1:46095508-46095527 Msa1021600:intron 15.0%
!! ATGTATAATATGAAATTGAT+TGG + chr7_1:46096897-46096916 None:intergenic 15.0%
!! TAGTTTGGTTAATTAGATTT+AGG - chr7_1:46093994-46094013 Msa1021600:CDS 20.0%
!!! TGATGTTAGCATAAATTTTA+TGG - chr7_1:46094106-46094125 Msa1021600:intron 20.0%
!! AAAATTGTATCTTGATAAAC+TGG + chr7_1:46094304-46094323 None:intergenic 20.0%
!! AGGAACTATATTAATTGAAT+AGG - chr7_1:46094421-46094440 Msa1021600:intron 20.0%
!! AATTAGTTGAAGTTATTACT+AGG + chr7_1:46094461-46094480 None:intergenic 20.0%
!!! TTAACTTCTTTTTTTTACGA+AGG + chr7_1:46094650-46094669 None:intergenic 20.0%
!! ATTCTTATTCTAAATTGAAC+TGG - chr7_1:46094683-46094702 Msa1021600:intron 20.0%
!!! TCTCAAGAAAAAGTTTATTT+TGG - chr7_1:46094765-46094784 Msa1021600:intron 20.0%
!!! CTCAAGAAAAAGTTTATTTT+GGG - chr7_1:46094766-46094785 Msa1021600:intron 20.0%
!! AATAAAACCTTAATCATACA+TGG + chr7_1:46095105-46095124 None:intergenic 20.0%
!!! TGTATGATTAAGGTTTTATT+TGG - chr7_1:46095105-46095124 Msa1021600:intron 20.0%
!!! AATTTTATGTCCTTCATAAT+TGG - chr7_1:46095421-46095440 Msa1021600:intron 20.0%
!!! ATTTTATGTCCTTCATAATT+GGG - chr7_1:46095422-46095441 Msa1021600:intron 20.0%
!! ATAGTTGAGACTTATTTATA+GGG + chr7_1:46096178-46096197 None:intergenic 20.0%
!! AATAGTTGAGACTTATTTAT+AGG + chr7_1:46096179-46096198 None:intergenic 20.0%
!! ATATATACTGTTATGAATCA+TGG + chr7_1:46096325-46096344 None:intergenic 20.0%
!! TTCCCTTTAATAACATAATA+TGG + chr7_1:46096386-46096405 None:intergenic 20.0%
!!! ATGTTGTTTTGATTGGTTTT+AGG + chr7_1:46093658-46093677 None:intergenic 25.0%
!!! CTAAACAATGTTGTTTTGAT+TGG + chr7_1:46093665-46093684 None:intergenic 25.0%
!! TTTAACTTCAAAACCGAATT+GGG + chr7_1:46093812-46093831 None:intergenic 25.0%
! GAACAATCGAATTTATCTAA+AGG - chr7_1:46093911-46093930 Msa1021600:three_prime_UTR 25.0%
! TTCATGTATTTCTCTTAGTT+TGG - chr7_1:46093979-46093998 Msa1021600:CDS 25.0%
! TAGGTTGTAATGTTTAAAAG+AGG - chr7_1:46094013-46094032 Msa1021600:CDS 25.0%
! TAATGTTTAAAAGAGGTGAA+GGG - chr7_1:46094020-46094039 Msa1021600:CDS 25.0%
!! TTAAGTTGTTTATCCAAACA+CGG - chr7_1:46095356-46095375 Msa1021600:intron 25.0%
! AAAATGAAAGAGCAATAGTT+AGG + chr7_1:46095496-46095515 None:intergenic 25.0%
! TTGTACTAAATCACTTATTG+CGG + chr7_1:46095694-46095713 None:intergenic 25.0%
! GTAAAAAACTTGAAAACAAC+AGG + chr7_1:46095818-46095837 None:intergenic 25.0%
! ATAGTGAATAAACCATAGTT+AGG - chr7_1:46096090-46096109 Msa1021600:intron 25.0%
! GTTTACATATAACCTAACTA+TGG + chr7_1:46096105-46096124 None:intergenic 25.0%
! GTTAGGTTATATGTAAACTA+TGG - chr7_1:46096107-46096126 Msa1021600:intron 25.0%
! TAGTTGAGACTTATTTATAG+GGG + chr7_1:46096177-46096196 None:intergenic 25.0%
! TGGCCATATTATGTTATTAA+AGG - chr7_1:46096380-46096399 Msa1021600:intron 25.0%
! GGCCATATTATGTTATTAAA+GGG - chr7_1:46096381-46096400 Msa1021600:intron 25.0%
! TTATGTTATTAAAGGGAACT+TGG - chr7_1:46096388-46096407 Msa1021600:intron 25.0%
! TATGTTATTAAAGGGAACTT+GGG - chr7_1:46096389-46096408 Msa1021600:intron 25.0%
! AAAAATTCAACCCTACAAAA+GGG + chr7_1:46096437-46096456 None:intergenic 25.0%
! AAAAAATTCAACCCTACAAA+AGG + chr7_1:46096438-46096457 None:intergenic 25.0%
!!! TACAAAGTATTGTCAAACAA+CGG - chr7_1:46096540-46096559 Msa1021600:intron 25.0%
!! AACATCAATGCTATATTTTG+TGG - chr7_1:46096677-46096696 Msa1021600:intron 25.0%
!!! ATTGTTAGTTTTGATGAGAA+AGG - chr7_1:46096939-46096958 Msa1021600:CDS 25.0%
GTATAGTATGAATGAAACAC+AGG + chr7_1:46093615-46093634 None:intergenic 30.0%
AGAACAAAAATGTTTGCCAA+TGG - chr7_1:46093707-46093726 Msa1021600:three_prime_UTR 30.0%
AAAGTTGTGAACAAAACCAT+TGG + chr7_1:46093726-46093745 None:intergenic 30.0%
!! TTTCGATTTTGAAAGCAACA+TGG + chr7_1:46093758-46093777 None:intergenic 30.0%
TTGCTTTCAAAATCGAAACT+TGG - chr7_1:46093760-46093779 Msa1021600:three_prime_UTR 30.0%
! CTTTAACTTCAAAACCGAAT+TGG + chr7_1:46093813-46093832 None:intergenic 30.0%
GAAATCTTGAATTGAGTGTT+TGG + chr7_1:46093851-46093870 None:intergenic 30.0%
TTCTGCAAAAACTACGAAAT+TGG + chr7_1:46093894-46093913 None:intergenic 30.0%
GTAATGTTTAAAAGAGGTGA+AGG - chr7_1:46094019-46094038 Msa1021600:CDS 30.0%
AAGATAAGTCAATCCATAGA+GGG - chr7_1:46094392-46094411 Msa1021600:intron 30.0%
!!! GTTTATTTTGGGATGTAAGA+TGG - chr7_1:46094777-46094796 Msa1021600:intron 30.0%
! ATTTTCACTTGGCATATACA+AGG + chr7_1:46094858-46094877 None:intergenic 30.0%
! TTCTCTGTGAAATTTTCACT+TGG + chr7_1:46094869-46094888 None:intergenic 30.0%
! ACGAAAACTAGGTACATTTT+AGG + chr7_1:46094912-46094931 None:intergenic 30.0%
AAGATATGATCCTTTCATGA+TGG - chr7_1:46094950-46094969 Msa1021600:intron 30.0%
AATACAGTAACCATCATGAA+AGG + chr7_1:46094963-46094982 None:intergenic 30.0%
CAAAAGACAAAGCAATTATC+AGG + chr7_1:46094994-46095013 None:intergenic 30.0%
! CTGATAATTGCTTTGTCTTT+TGG - chr7_1:46094992-46095011 Msa1021600:intron 30.0%
!! TTGTCTTTTGGAAATTCATG+TGG - chr7_1:46095004-46095023 Msa1021600:intron 30.0%
!! TGTCTTTTGGAAATTCATGT+GGG - chr7_1:46095005-46095024 Msa1021600:intron 30.0%
! TGGTGTTTTCCTTTCAAAAT+AGG + chr7_1:46095085-46095104 None:intergenic 30.0%
GAAAACACCATGTATGATTA+AGG - chr7_1:46095095-46095114 Msa1021600:intron 30.0%
! TCTTAAAGTGCTTACATCAT+TGG + chr7_1:46095151-46095170 None:intergenic 30.0%
!! CTTATTTTCATTAGCTCTCT+AGG - chr7_1:46095226-46095245 Msa1021600:intron 30.0%
TTCATTGTTCAACAAGTCTT+AGG + chr7_1:46095382-46095401 None:intergenic 30.0%
TTAAGTGTTCCCAATTATGA+AGG + chr7_1:46095434-46095453 None:intergenic 30.0%
AATGGTAATTGTGACTTACA+GGG + chr7_1:46095603-46095622 None:intergenic 30.0%
AAATGGTAATTGTGACTTAC+AGG + chr7_1:46095604-46095623 None:intergenic 30.0%
TAAGTCACAATTACCATTTC+CGG - chr7_1:46095605-46095624 Msa1021600:intron 30.0%
TAGCAGATATTTGTGCTATA+TGG - chr7_1:46095639-46095658 Msa1021600:intron 30.0%
ATATTTGTGCTATATGGTAG+CGG - chr7_1:46095645-46095664 Msa1021600:intron 30.0%
GAGAAACATGAAAAACTAGA+AGG + chr7_1:46095854-46095873 None:intergenic 30.0%
! AAGGATTTCAGTAACTTTTG+TGG - chr7_1:46095926-46095945 Msa1021600:intron 30.0%
AAATAAAGAAAGCTGTAGAG+AGG + chr7_1:46095986-46096005 None:intergenic 30.0%
!! CTCTACAGCTTTCTTTATTT+TGG - chr7_1:46095986-46096005 Msa1021600:intron 30.0%
! CTATGGTTAGTTAGTTAGTT+AGG - chr7_1:46096124-46096143 Msa1021600:intron 30.0%
! ATATGTCTTTTCCCTTTTGT+AGG - chr7_1:46096423-46096442 Msa1021600:intron 30.0%
! TATGTCTTTTCCCTTTTGTA+GGG - chr7_1:46096424-46096443 Msa1021600:intron 30.0%
ATCCTAAAGTCTTAACCATT+GGG + chr7_1:46096643-46096662 None:intergenic 30.0%
TATCCTAAAGTCTTAACCAT+TGG + chr7_1:46096644-46096663 None:intergenic 30.0%
CAAGTACATTGTTTGTTCAT+AGG - chr7_1:46096706-46096725 Msa1021600:intron 30.0%
CTTGATCTTTATTGAATGCT+AGG + chr7_1:46096760-46096779 None:intergenic 30.0%
CAAAACAAACTTTGACAGAA+TGG - chr7_1:46096971-46096990 Msa1021600:CDS 30.0%
! AATGACATTTTCTATTGCAC+AGG - chr7_1:46097071-46097090 Msa1021600:CDS 30.0%
AACACAGGAGAACAAACATT+AGG + chr7_1:46093600-46093619 None:intergenic 35.0%
TCAATTTCGTTCACCCAATT+CGG - chr7_1:46093796-46093815 Msa1021600:three_prime_UTR 35.0%
CACAGGAAAAAACAATTGCA+AGG + chr7_1:46094072-46094091 None:intergenic 35.0%
!!! CTTGCAATTGTTTTTTCCTG+TGG - chr7_1:46094070-46094089 Msa1021600:CDS 35.0%
! TCAATACTAGAGTTTTCCAC+AGG + chr7_1:46094089-46094108 None:intergenic 35.0%
!! TTTGGTGTTAAGTGTCTGTT+TGG - chr7_1:46094188-46094207 Msa1021600:intron 35.0%
TGTTAAGTGTCTGTTTGGAT+TGG - chr7_1:46094193-46094212 Msa1021600:intron 35.0%
GAAGATAAGTCAATCCATAG+AGG - chr7_1:46094391-46094410 Msa1021600:intron 35.0%
GAAGTTATTACTAGGTGACT+AGG + chr7_1:46094453-46094472 None:intergenic 35.0%
CATTTGCCAATATGAAGTGT+CGG - chr7_1:46094604-46094623 Msa1021600:intron 35.0%
TAAAGATTGCTTGACCTAGA+TGG - chr7_1:46094727-46094746 Msa1021600:intron 35.0%
TTAAGAGTTTGATGCCATCT+AGG + chr7_1:46094744-46094763 None:intergenic 35.0%
AAAGGATCATATCTTCCAAG+TGG + chr7_1:46094945-46094964 None:intergenic 35.0%
GAGTTTATGCATTTGTGATG+AGG - chr7_1:46095056-46095075 Msa1021600:intron 35.0%
!! ATGAGGCATCCTATTTTGAA+AGG - chr7_1:46095073-46095092 Msa1021600:intron 35.0%
!! GTAAGCACTTTAAGACTGTT+TGG - chr7_1:46095156-46095175 Msa1021600:intron 35.0%
AAGTCACAATTACCATTTCC+GGG - chr7_1:46095606-46095625 Msa1021600:intron 35.0%
! TACAAAGTCTTGTCGAATAG+TGG - chr7_1:46095709-46095728 Msa1021600:intron 35.0%
TCTAGCATCAGCAAAAAGAA+GGG + chr7_1:46095884-46095903 None:intergenic 35.0%
TTCTAGCATCAGCAAAAAGA+AGG + chr7_1:46095885-46095904 None:intergenic 35.0%
! GTTACTGAAATCCTTGCTAT+TGG + chr7_1:46095921-46095940 None:intergenic 35.0%
TACTCTACTATGAGTCACTA+TGG - chr7_1:46096231-46096250 Msa1021600:intron 35.0%
ACTCTACTATGAGTCACTAT+GGG - chr7_1:46096232-46096251 Msa1021600:intron 35.0%
TAGCATAGGTGTATTCATGT+GGG + chr7_1:46096263-46096282 None:intergenic 35.0%
ATAGCATAGGTGTATTCATG+TGG + chr7_1:46096264-46096283 None:intergenic 35.0%
ATCAGCAAGAAAGATAGCAT+AGG + chr7_1:46096277-46096296 None:intergenic 35.0%
ATCATTATGACCTTTATCCC+TGG - chr7_1:46096295-46096314 Msa1021600:intron 35.0%
TCATTATGACCTTTATCCCT+GGG - chr7_1:46096296-46096315 Msa1021600:intron 35.0%
TTATGAATCATGGAATCCCA+GGG + chr7_1:46096315-46096334 None:intergenic 35.0%
ACATGAATGAACATGGCAAT+TGG + chr7_1:46096358-46096377 None:intergenic 35.0%
!! GGGAAACTTGTTGTCAATTA+CGG + chr7_1:46096623-46096642 None:intergenic 35.0%
ATTGACAACAAGTTTCCCAA+TGG - chr7_1:46096625-46096644 Msa1021600:intron 35.0%
TTCCCAATGGTTAAGACTTT+AGG - chr7_1:46096638-46096657 Msa1021600:intron 35.0%
!! TCGCTTTGTTTAGTTATGTG+TGG - chr7_1:46097135-46097154 Msa1021600:five_prime_UTR 35.0%
!! GAACGAAATTGATGATGGGT+AGG + chr7_1:46093788-46093807 None:intergenic 40.0%
! GGGTGAACGAAATTGATGAT+GGG + chr7_1:46093792-46093811 None:intergenic 40.0%
TGGGTGAACGAAATTGATGA+TGG + chr7_1:46093793-46093812 None:intergenic 40.0%
AAAACTACGAAATTGGAGCG+AGG + chr7_1:46093887-46093906 None:intergenic 40.0%
AAGAGGTGAAGGGATGTTAA+TGG - chr7_1:46094030-46094049 Msa1021600:CDS 40.0%
AGAGGTGAAGGGATGTTAAT+GGG - chr7_1:46094031-46094050 Msa1021600:CDS 40.0%
CAATCCATAGAGGGACATTA+AGG - chr7_1:46094401-46094420 Msa1021600:intron 40.0%
AGTTCCTTAATGTCCCTCTA+TGG + chr7_1:46094408-46094427 None:intergenic 40.0%
CTGCATGGTGCATAATATGT+GGG - chr7_1:46094561-46094580 Msa1021600:intron 40.0%
ATGTGGGTACTACATAGCTA+AGG - chr7_1:46094577-46094596 Msa1021600:intron 40.0%
TGTGGGTACTACATAGCTAA+GGG - chr7_1:46094578-46094597 Msa1021600:intron 40.0%
! GATGGCTAGTAACCATTTTC+TGG - chr7_1:46094795-46094814 Msa1021600:intron 40.0%
GAAACATCAACGCCAGAAAA+TGG + chr7_1:46094810-46094829 None:intergenic 40.0%
AGAGCAATAGTTAGGCTTTC+TGG + chr7_1:46095488-46095507 None:intergenic 40.0%
! AGATAGTTCTGCAGAATGCA+TGG - chr7_1:46095536-46095555 Msa1021600:intron 40.0%
TATTTGACAATGCCCGGAAA+TGG + chr7_1:46095621-46095640 None:intergenic 40.0%
! ATCTGCTATTTGACAATGCC+CGG + chr7_1:46095627-46095646 None:intergenic 40.0%
ATCACTTATTGCGGAACAAC+AGG + chr7_1:46095685-46095704 None:intergenic 40.0%
TCGAATAGTGGCTATAACAG+TGG - chr7_1:46095721-46095740 Msa1021600:intron 40.0%
!!! ACAGGCAGTTTTTTCAATCG+CGG + chr7_1:46095800-46095819 None:intergenic 40.0%
!! GAAATCCTTGCTATTGGTCT+TGG + chr7_1:46095915-46095934 None:intergenic 40.0%
GTTATGAATCATGGAATCCC+AGG + chr7_1:46096316-46096335 None:intergenic 40.0%
TGCCATGTTCATTCATGTAC+TGG - chr7_1:46096360-46096379 Msa1021600:intron 40.0%
! ATAGCTGCTGTTTGAAACAG+TGG + chr7_1:46096471-46096490 None:intergenic 40.0%
GTTTGTTCATAGGCTACCAT+AGG - chr7_1:46096716-46096735 Msa1021600:intron 40.0%
TGCAAAGTATGCAAGTCCTA+TGG + chr7_1:46096735-46096754 None:intergenic 40.0%
AAAGATCAAGAACCACCTAG+CGG - chr7_1:46096770-46096789 Msa1021600:intron 40.0%
CAAAGGATCATCCATAGGTT+TGG + chr7_1:46096813-46096832 None:intergenic 40.0%
CAAACCTATGGATGATCCTT+TGG - chr7_1:46096811-46096830 Msa1021600:intron 40.0%
TCTTCCAAAGGATCATCCAT+AGG + chr7_1:46096818-46096837 None:intergenic 40.0%
! TATGGATGATCCTTTGGAAG+AGG - chr7_1:46096817-46096836 Msa1021600:intron 40.0%
! ATCCTTTGGAAGAGGCTAAT+AGG - chr7_1:46096825-46096844 Msa1021600:intron 40.0%
! ATCCTATTAGCCTCTTCCAA+AGG + chr7_1:46096830-46096849 None:intergenic 40.0%
GGAAGAGGCTAATAGGATAA+TGG - chr7_1:46096832-46096851 Msa1021600:intron 40.0%
ATAGCCTTTAACAAAGCCTC+AGG - chr7_1:46097043-46097062 Msa1021600:CDS 40.0%
TAGCCTTTAACAAAGCCTCA+GGG - chr7_1:46097044-46097063 Msa1021600:CDS 40.0%
! AAAATGTCATTTGCACCCTG+AGG + chr7_1:46097062-46097081 None:intergenic 40.0%
ACTATACCTCTTCCATTCCC+AGG - chr7_1:46093628-46093647 Msa1021600:three_prime_UTR 45.0%
!!! GATTGGTTTTAGGTGCACCT+GGG + chr7_1:46093648-46093667 None:intergenic 45.0%
!!! TGATTGGTTTTAGGTGCACC+TGG + chr7_1:46093649-46093668 None:intergenic 45.0%
! CGAAATTGGAGCGAGGTTTT+AGG + chr7_1:46093880-46093899 None:intergenic 45.0%
CCACATATTATGCACCATGC+AGG + chr7_1:46094563-46094582 None:intergenic 45.0%
CCTGCATGGTGCATAATATG+TGG - chr7_1:46094560-46094579 Msa1021600:intron 45.0%
!! GTAGCACCGACACTTCATAT+TGG + chr7_1:46094613-46094632 None:intergenic 45.0%
GTCATCGACACACGAAAACT+AGG + chr7_1:46094923-46094942 None:intergenic 45.0%
AACAAGTCTTAGGCCGTGTT+TGG + chr7_1:46095372-46095391 None:intergenic 45.0%
!! GAATGCATGGAGAGTTGGTA+AGG - chr7_1:46095549-46095568 Msa1021600:intron 45.0%
GGTAAGGATGGAATTGATGC+AGG - chr7_1:46095565-46095584 Msa1021600:intron 45.0%
GTTATAGCACTGCAGTGTAG+CGG - chr7_1:46095745-46095764 Msa1021600:intron 45.0%
CAATCGCGGATCACAGAAAA+TGG + chr7_1:46095786-46095805 None:intergenic 45.0%
CTGTACCAAGACCAATAGCA+AGG - chr7_1:46095907-46095926 Msa1021600:intron 45.0%
TCATGGAATCCCAGGGATAA+AGG + chr7_1:46096308-46096327 None:intergenic 45.0%
GGCCAGTACATGAATGAACA+TGG + chr7_1:46096365-46096384 None:intergenic 45.0%
AAGATCAAGAACCACCTAGC+GGG - chr7_1:46096771-46096790 Msa1021600:intron 45.0%
AGGAACTACGACCAAACCTA+TGG - chr7_1:46096799-46096818 Msa1021600:intron 45.0%
!! GTTTTAGGTGCACCTGGGAA+TGG + chr7_1:46093643-46093662 None:intergenic 50.0%
ACACGACACTCACACGTAGA+CGG - chr7_1:46094518-46094537 Msa1021600:intron 50.0%
!! AGTGTCGGTGCTACATAGCT+AGG - chr7_1:46094619-46094638 Msa1021600:intron 50.0%
!! GTGTCGGTGCTACATAGCTA+GGG - chr7_1:46094620-46094639 Msa1021600:intron 50.0%
! TTCGTGTGTCGATGACCACT+TGG - chr7_1:46094927-46094946 Msa1021600:intron 50.0%
CTGCAGAATGCATGGAGAGT+TGG - chr7_1:46095544-46095563 Msa1021600:intron 50.0%
!! GCATGGAGAGTTGGTAAGGA+TGG - chr7_1:46095553-46095572 Msa1021600:intron 50.0%
!! GCACCCTGAGGCTTTGTTAA+AGG + chr7_1:46097050-46097069 None:intergenic 50.0%
!!! TAACCAGCGCCGTTTTTCCA+CGG - chr7_1:46097222-46097241 Msa1021600:five_prime_UTR 50.0%
TCCAAGCACCCGTGGAAAAA+CGG + chr7_1:46097234-46097253 None:intergenic 50.0%
GTGGCGTTGCTTGCTTCACT+GGG + chr7_1:46094491-46094510 None:intergenic 55.0%
TGTGGCGTTGCTTGCTTCAC+TGG + chr7_1:46094492-46094511 None:intergenic 55.0%
! TGAGTGTCGTGTCAGGTGTG+TGG + chr7_1:46094510-46094529 None:intergenic 55.0%
! CTACGTGTGAGTGTCGTGTC+AGG + chr7_1:46094517-46094536 None:intergenic 55.0%
CACGACACTCACACGTAGAC+GGG - chr7_1:46094519-46094538 Msa1021600:intron 55.0%
! CACTCACACGTAGACGGGTT+TGG - chr7_1:46094524-46094543 Msa1021600:intron 55.0%
! AGACGGGTTTGGATCCCCTA+TGG - chr7_1:46094535-46094554 Msa1021600:intron 55.0%
! TGCACCATGCAGGTGCCATA+GGG + chr7_1:46094553-46094572 None:intergenic 55.0%
! ATGCACCATGCAGGTGCCAT+AGG + chr7_1:46094554-46094573 None:intergenic 55.0%
CAAGAACCACCTAGCGGGAA+TGG - chr7_1:46096776-46096795 Msa1021600:intron 55.0%
GTAGTTCCTCCATTCCCGCT+AGG + chr7_1:46096788-46096807 None:intergenic 55.0%
!!! AACCAGCGCCGTTTTTCCAC+GGG - chr7_1:46097223-46097242 Msa1021600:five_prime_UTR 55.0%
GGTGCACCTGGGAATGGAAG+AGG + chr7_1:46093637-46093656 None:intergenic 60.0%
GATCCCCTATGGCACCTGCA+TGG - chr7_1:46094546-46094565 Msa1021600:intron 60.0%
! GCACCATGCAGGTGCCATAG+GGG + chr7_1:46094552-46094571 None:intergenic 60.0%
GAACCACCTAGCGGGAATGG+AGG - chr7_1:46096779-46096798 Msa1021600:intron 60.0%
GTTCCTCCATTCCCGCTAGG+TGG + chr7_1:46096785-46096804 None:intergenic 60.0%
!!! GCCGTTTTTCCACGGGTGCT+TGG - chr7_1:46097230-46097249 Msa1021600:five_prime_UTR 60.0%
CACCCGTGGAAAAACGGCGC+TGG + chr7_1:46097228-46097247 None:intergenic 65.0%
CTGCTCGTTCCAAGCACCCG+TGG + chr7_1:46097242-46097261 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 46093576 46097266 46093576 ID=Msa1021600;Name=Msa1021600
chr7_1 mRNA 46093576 46097266 46093576 ID=Msa1021600-mRNA-1;Parent=Msa1021600;Name=Msa1021600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=140|1|1|1|1|1|4|398|174
chr7_1 exon 46093576 46094114 46093576 ID=Msa1021600-mRNA-1:exon:9150;Parent=Msa1021600-mRNA-1
chr7_1 exon 46094835 46094939 46094835 ID=Msa1021600-mRNA-1:exon:9149;Parent=Msa1021600-mRNA-1
chr7_1 exon 46095239 46095300 46095239 ID=Msa1021600-mRNA-1:exon:9148;Parent=Msa1021600-mRNA-1
chr7_1 exon 46096910 46097266 46096910 ID=Msa1021600-mRNA-1:exon:9147;Parent=Msa1021600-mRNA-1
chr7_1 five_prime_UTR 46097127 46097266 46097127 ID=Msa1021600-mRNA-1:five_prime_utr;Parent=Msa1021600-mRNA-1
chr7_1 CDS 46096910 46097126 46096910 ID=Msa1021600-mRNA-1:cds;Parent=Msa1021600-mRNA-1
chr7_1 CDS 46095239 46095300 46095239 ID=Msa1021600-mRNA-1:cds;Parent=Msa1021600-mRNA-1
chr7_1 CDS 46094835 46094939 46094835 ID=Msa1021600-mRNA-1:cds;Parent=Msa1021600-mRNA-1
chr7_1 CDS 46093974 46094114 46093974 ID=Msa1021600-mRNA-1:cds;Parent=Msa1021600-mRNA-1
chr7_1 three_prime_UTR 46093576 46093973 46093576 ID=Msa1021600-mRNA-1:three_prime_utr;Parent=Msa1021600-mRNA-1
Gene Sequence

>Msa1021600

ATGTTTGCCAATGGTTTTGTTCACAACTTTAGTTCTGTTCCATGTTGCTTTCAAAATCGAAACTTGGCTCCTACCCATCATCAATTTCGTTCACCCAATTCGGTTTTGAAGTTAAAGAAGCAAACTTTACTGCCAAACACTCAATTCAAGATTTCTAGAAGCCTAAAACCTCGCTCCAATTTCGTAGTTTTTGCAGAACAATCGAATTTATCTAAAGTTCTGCAGAATGCATGGAGAGTTGGTAAGGATGGAATTGATGCAGGCACAAATCTAGTCCCTAATTCTGTACCAAGACCAATAGCAAGGATTTCAGTAACTTTTGTGGCTCTGAGTGCTTTGCTTTTTGTGTTCAAGTCTCTCCTCTCTACAGCTTTCTTTATTTTGGCTACCATAGGACTTGCATACTTTGCATACCTAGCATTCAATAAAGATCAAGAACCACCTAGCGGGAATGGAGGAACTACGACCAAACCTATGGATGATCCTTTGGAAGAGGCTAATAGGATAATGGATAAATATAAGTAG

Protein sequence

>Msa1021600

MFANGFVHNFSSVPCCFQNRNLAPTHHQFRSPNSVLKLKKQTLLPNTQFKISRSLKPRSNFVVFAEQSNLSKVLQNAWRVGKDGIDAGTNLVPNSVPRPIARISVTFVALSALLFVFKSLLSTAFFILATIGLAYFAYLAFNKDQEPPSGNGGTTTKPMDDPLEEANRIMDKYK*