AlfalfaGEDB | Msa1091710

M. sativa cultivar zhongmu-4 / Msa1091710

KEGG: K02707|K02713
GO: -
PFAM: PF00283.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091710	KAH0447118.1	69.630	135	10	1	1	104	24	158	1.76e-55	179

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091710	sp\|Q2PMR7\|PSBE_SOYBN	70.732	82	24	0	1	82	1	82	5.71e-33	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091710	A0A6A5LQW0	71.429	91	19	1	1	84	1	91	6.95e-35	124

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa1091710	0.824826	6.538047e-54	-8.615850e-47
Msa0017300	Msa1091710	0.813995	1.930015e-51	-8.615850e-47
Msa0029520	Msa1091710	0.841254	5.313806e-58	-8.615850e-47
Msa0033840	Msa1091710	0.849948	2.329310e-60	-8.615850e-47
Msa0065670	Msa1091710	0.824279	8.797954e-54	-8.615850e-47
Msa0067590	Msa1091710	0.817124	3.879417e-52	-8.615850e-47
Msa0075990	Msa1091710	0.807545	4.797365e-50	-8.615850e-47
Msa0081610	Msa1091710	0.851602	7.976547e-61	-8.615850e-47
Msa0095810	Msa1091710	0.814566	1.443055e-51	-8.615850e-47
Msa0098500	Msa1091710	0.801698	7.963692e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091710	MtrunA17_CPg0492821	69.512	82	25	0	1	82	1	82	6.16e-33	109
Msa1091710	MtrunA17_Chr4g0016851	69.512	82	25	0	1	82	1	82	6.16e-33	109
Msa1091710	MtrunA17_Chr4g0015751	69.512	82	25	0	1	82	1	82	6.16e-33	109
Msa1091710	MtrunA17_Chr4g0017011	96.296	54	2	0	1	54	1	54	1.52e-32	108
Msa1091710	MtrunA17_Chr5g0423051	94.444	54	3	0	1	54	1	54	3.59e-31	105
Msa1091710	MtrunA17_Chr4g0016841	61.538	91	21	2	14	104	9	85	3.80e-31	105
Msa1091710	MtrunA17_Chr6g0451331	90.323	31	3	0	24	54	41	71	5.11e-14	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091710	ATCG00580.1	69.512	82	25	0	1	82	1	82	9.51e-34	112
Msa1091710	ATCG00560.1	97.297	37	1	0	68	104	2	38	3.55e-19	74.3

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Find 25 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAATCCAGTATCGAATAC+TGG	0.423687	7_3:+7163213	None:intergenic
AATCGTACCAGTCTCTACTG+GGG	0.711157	7_3:-7162814	Msa1091710:CDS
ATAACCAACCCGCAATGAAT+AGG	0.348030	7_3:+7163170	None:intergenic
ATACCCTCCCTATTCATTGC+GGG	0.391873	7_3:-7163178	Msa1091710:CDS
ATTCGGATTAGGTTTATCGT+TGG	0.512045	7_3:+7162885	None:intergenic
CAACCCGCAATGAATAGGGA+GGG	0.665638	7_3:+7163175	None:intergenic
CCAACCCGCAATGAATAGGG+AGG	0.678708	7_3:+7163174	None:intergenic
CCTCCCTATTCATTGCGGGT+TGG	0.536548	7_3:-7163174	Msa1091710:CDS
CTCGGCATGTCTGGAAGCAC+AGG	0.508926	7_3:-7163262	Msa1091710:exon
CTTTCTGTAAAATACTCGTT+TGG	0.412027	7_3:+7163103	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATTACCAGTATTCGATAC+TGG	-	chr7_3:7162816-7162835	Msa1091710:CDS	30.0%
CTTTCTGTAAAATACTCGTT+TGG	+	chr7_3:7162935-7162954	None:intergenic	30.0%
CAAGGAATTCCATTAATAAC+TGG	-	chr7_3:7162959-7162978	Msa1091710:intron	30.0%
GTTGTTCCAAAGAATCAAAA+CGG	+	chr7_3:7162985-7163004	None:intergenic	30.0%
AACCATCGTACTGTAAAAAT+GGG	+	chr7_3:7163064-7163083	None:intergenic	30.0%
TCAAAACGGCCAGTTATTAA+TGG	+	chr7_3:7162971-7162990	None:intergenic	35.0%
TCGTACTGTAAAAATGGGAT+AGG	+	chr7_3:7163059-7163078	None:intergenic	35.0%
CAACCATCGTACTGTAAAAA+TGG	+	chr7_3:7163065-7163084	None:intergenic	35.0%
TATACCCTCCCTATTCATTG+CGG	-	chr7_3:7162856-7162875	Msa1091710:CDS	40.0%
TAACCAACCCGCAATGAATA+GGG	+	chr7_3:7162867-7162886	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	7162762	7163295	7162762	ID=Msa1091710;Name=Msa1091710
chr7_3	mRNA	7162762	7163295	7162762	ID=Msa1091710-mRNA-1;Parent=Msa1091710;Name=Msa1091710-mRNA-1;_AED=0.22;_eAED=0.22;_QI=17\|0\|0\|1\|0\|0\|2\|0\|104
chr7_3	exon	7163118	7163295	7163118	ID=Msa1091710-mRNA-1:exon:2255;Parent=Msa1091710-mRNA-1
chr7_3	exon	7162762	7162912	7162762	ID=Msa1091710-mRNA-1:exon:2254;Parent=Msa1091710-mRNA-1
chr7_3	five_prime_UTR	7163279	7163295	7163279	ID=Msa1091710-mRNA-1:five_prime_utr;Parent=Msa1091710-mRNA-1
chr7_3	CDS	7163118	7163278	7163118	ID=Msa1091710-mRNA-1:cds;Parent=Msa1091710-mRNA-1
chr7_3	CDS	7162762	7162912	7162762	ID=Msa1091710-mRNA-1:cds;Parent=Msa1091710-mRNA-1

Gene Sequence	>Msa1091710 ATGTCTGGAAGCACAGGAGAAAGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGGATTATTCATAGCATTACTATACCCTCCCTATTCATTGCGGGTTGGTTATTTGTCAGCACGGGTTTAGCTTACGATGTATTTGGAAGTCCTCGTCCAAACGATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTACGACACAATCAAACCCAAATGAACAAAATGTTGAATTGAATCGTACCAGTCTCTACTGGGGTTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCAAATTATTTCTTCAAT
Protein sequence	>Msa1091710 MSGSTGESSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNDSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN