Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091710 | KAH0447118.1 | 69.630 | 135 | 10 | 1 | 1 | 104 | 24 | 158 | 1.76e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091710 | sp|Q2PMR7|PSBE_SOYBN | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 5.71e-33 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091710 | A0A6A5LQW0 | 71.429 | 91 | 19 | 1 | 1 | 84 | 1 | 91 | 6.95e-35 | 124 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa1091710 | 0.824826 | 6.538047e-54 | -8.615850e-47 |
| Msa0017300 | Msa1091710 | 0.813995 | 1.930015e-51 | -8.615850e-47 |
| Msa0029520 | Msa1091710 | 0.841254 | 5.313806e-58 | -8.615850e-47 |
| Msa0033840 | Msa1091710 | 0.849948 | 2.329310e-60 | -8.615850e-47 |
| Msa0065670 | Msa1091710 | 0.824279 | 8.797954e-54 | -8.615850e-47 |
| Msa0067590 | Msa1091710 | 0.817124 | 3.879417e-52 | -8.615850e-47 |
| Msa0075990 | Msa1091710 | 0.807545 | 4.797365e-50 | -8.615850e-47 |
| Msa0081610 | Msa1091710 | 0.851602 | 7.976547e-61 | -8.615850e-47 |
| Msa0095810 | Msa1091710 | 0.814566 | 1.443055e-51 | -8.615850e-47 |
| Msa0098500 | Msa1091710 | 0.801698 | 7.963692e-49 | -8.615850e-47 |
| Msa0111110 | Msa1091710 | 0.833200 | 6.112128e-56 | -8.615850e-47 |
| Msa0606350 | Msa1091710 | 0.816660 | 4.931946e-52 | -8.615850e-47 |
| Msa0779450 | Msa1091710 | 0.803183 | 3.937130e-49 | -8.615850e-47 |
| Msa0829210 | Msa1091710 | 0.819033 | 1.436081e-52 | -8.615850e-47 |
| Msa0829250 | Msa1091710 | 0.808888 | 2.482254e-50 | -8.615850e-47 |
| Msa0126750 | Msa1091710 | 0.804902 | 1.728769e-49 | -8.615850e-47 |
| Msa0138990 | Msa1091710 | 0.802493 | 5.464664e-49 | -8.615850e-47 |
| Msa0154890 | Msa1091710 | 0.811494 | 6.806587e-51 | -8.615850e-47 |
| Msa0168770 | Msa1091710 | 0.817031 | 4.071229e-52 | -8.615850e-47 |
| Msa0173950 | Msa1091710 | 0.855772 | 5.039662e-62 | -8.615850e-47 |
| Msa0221850 | Msa1091710 | 0.962571 | 4.905966e-121 | -8.615850e-47 |
| Msa0225790 | Msa1091710 | 0.805452 | 1.325845e-49 | -8.615850e-47 |
| Msa0368450 | Msa1091710 | 0.819629 | 1.050682e-52 | -8.615850e-47 |
| Msa0380400 | Msa1091710 | 0.803797 | 2.937230e-49 | -8.615850e-47 |
| Msa0389080 | Msa1091710 | 0.852703 | 3.879320e-61 | -8.615850e-47 |
| Msa0398600 | Msa1091710 | 0.874072 | 8.987589e-68 | -8.615850e-47 |
| Msa0401860 | Msa1091710 | 0.823460 | 1.369082e-53 | -8.615850e-47 |
| Msa0405460 | Msa1091710 | 0.855094 | 7.945977e-62 | -8.615850e-47 |
| Msa0405470 | Msa1091710 | 0.861460 | 1.009913e-63 | -8.615850e-47 |
| Msa0405550 | Msa1091710 | 0.860463 | 2.029212e-63 | -8.615850e-47 |
| Msa0449910 | Msa1091710 | 0.954249 | 4.523614e-112 | -8.615850e-47 |
| Msa0461620 | Msa1091710 | 0.816731 | 4.753934e-52 | -8.615850e-47 |
| Msa0476890 | Msa1091710 | 0.824287 | 8.760782e-54 | -8.615850e-47 |
| Msa0982090 | Msa1091710 | 0.849714 | 2.707560e-60 | -8.615850e-47 |
| Msa0983600 | Msa1091710 | 0.839250 | 1.772805e-57 | -8.615850e-47 |
| Msa0983610 | Msa1091710 | 0.835980 | 1.223230e-56 | -8.615850e-47 |
| Msa1086320 | Msa1091710 | 0.821390 | 4.142321e-53 | -8.615850e-47 |
| Msa1086490 | Msa1091710 | 0.819413 | 1.177014e-52 | -8.615850e-47 |
| Msa1086510 | Msa1091710 | 0.807537 | 4.815908e-50 | -8.615850e-47 |
| Msa1086670 | Msa1091710 | 0.823444 | 1.380910e-53 | -8.615850e-47 |
| Msa1086680 | Msa1091710 | 0.821678 | 3.553950e-53 | -8.615850e-47 |
| Msa1086760 | Msa1091710 | 0.834983 | 2.186474e-56 | -8.615850e-47 |
| Msa1086770 | Msa1091710 | 0.836140 | 1.113981e-56 | -8.615850e-47 |
| Msa1086940 | Msa1091710 | 0.837334 | 5.525367e-57 | -8.615850e-47 |
| Msa1087070 | Msa1091710 | 0.843421 | 1.415613e-58 | -8.615850e-47 |
| Msa1087080 | Msa1091710 | 0.822109 | 2.823934e-53 | -8.615850e-47 |
| Msa1087090 | Msa1091710 | 0.838391 | 2.957837e-57 | -8.615850e-47 |
| Msa1091710 | Msa1181370 | 0.812748 | 3.626137e-51 | -8.615850e-47 |
| Msa1091710 | Msa1260640 | 0.801757 | 7.746176e-49 | -8.615850e-47 |
| Msa1091710 | Msa1273620 | 0.852657 | 3.996744e-61 | -8.615850e-47 |
| Msa1091710 | Msa1305970 | 0.814207 | 1.732488e-51 | -8.615850e-47 |
| Msa1091710 | Msa1311600 | 0.832011 | 1.205531e-55 | -8.615850e-47 |
| Msa1091710 | Msa1354360 | 0.833999 | 3.860758e-56 | -8.615850e-47 |
| Msa1091710 | Msa1354370 | 0.818012 | 2.447778e-52 | -8.615850e-47 |
| Msa1091710 | Msa1354400 | 0.841326 | 5.085586e-58 | -8.615850e-47 |
| Msa1091710 | Msa1354520 | 0.833422 | 5.383548e-56 | -8.615850e-47 |
| Msa1091710 | Msa1354530 | 0.839350 | 1.669786e-57 | -8.615850e-47 |
| Msa1091710 | Msa1354650 | 0.838175 | 3.361330e-57 | -8.615850e-47 |
| Msa1091710 | Msa1354660 | 0.839367 | 1.652890e-57 | -8.615850e-47 |
| Msa1091710 | Msa1354780 | 0.838820 | 2.291627e-57 | -8.615850e-47 |
| Msa1091710 | Msa1354790 | 0.839906 | 1.197042e-57 | -8.615850e-47 |
| Msa1091710 | Msa1354960 | 0.838743 | 2.398959e-57 | -8.615850e-47 |
| Msa1091710 | Msa1355090 | 0.800974 | 1.120229e-48 | -8.615850e-47 |
| Msa1091710 | Msa1365990 | 0.841896 | 3.597287e-58 | -8.615850e-47 |
| Msa1091710 | Msa1366020 | 0.836865 | 7.284038e-57 | -8.615850e-47 |
| Msa1091710 | Msa1366030 | 0.839731 | 1.329629e-57 | -8.615850e-47 |
| Msa1091710 | Msa1366060 | 0.839393 | 1.627556e-57 | -8.615850e-47 |
| Msa1091710 | Msa1368260 | 0.842350 | 2.728478e-58 | -8.615850e-47 |
| Msa1091710 | Msa1382380 | 0.848275 | 6.799332e-60 | -8.615850e-47 |
| Msa1091710 | Msa1385360 | 0.842157 | 3.070130e-58 | -8.615850e-47 |
| Msa1091710 | Msa1385390 | 0.839803 | 1.273108e-57 | -8.615850e-47 |
| Msa1091710 | Msa1391130 | 0.838028 | 3.668286e-57 | -8.615850e-47 |
| Msa1091710 | Msa1391140 | 0.839445 | 1.578034e-57 | -8.615850e-47 |
| Msa1091710 | Msa1391260 | 0.834684 | 2.598876e-56 | -8.615850e-47 |
| Msa1091710 | Msa1394080 | 0.813666 | 2.279921e-51 | -8.615850e-47 |
| Msa1091710 | Msa1394270 | 0.814485 | 1.504055e-51 | -8.615850e-47 |
| Msa1091710 | Msa1440140 | 0.807952 | 3.931391e-50 | -8.615850e-47 |
| Msa0260580 | Msa1091710 | 0.800123 | 1.670787e-48 | -8.615850e-47 |
| Msa0268210 | Msa1091710 | 0.836123 | 1.125015e-56 | -8.615850e-47 |
| Msa0268450 | Msa1091710 | 0.836579 | 8.613632e-57 | -8.615850e-47 |
| Msa0268660 | Msa1091710 | 0.809196 | 2.132762e-50 | -8.615850e-47 |
| Msa0268670 | Msa1091710 | 0.857125 | 2.019210e-62 | -8.615850e-47 |
| Msa0268700 | Msa1091710 | 0.811459 | 6.927346e-51 | -8.615850e-47 |
| Msa0268880 | Msa1091710 | 0.824493 | 7.833040e-54 | -8.615850e-47 |
| Msa0269090 | Msa1091710 | 0.822425 | 2.385357e-53 | -8.615850e-47 |
| Msa0269170 | Msa1091710 | 0.840574 | 8.013407e-58 | -8.615850e-47 |
| Msa0340700 | Msa1091710 | 0.802099 | 6.586497e-49 | -8.615850e-47 |
| Msa0483970 | Msa1091710 | 0.855011 | 8.397135e-62 | -8.615850e-47 |
| Msa0483980 | Msa1091710 | 0.802175 | 6.354761e-49 | -8.615850e-47 |
| Msa0493180 | Msa1091710 | 0.965951 | 2.825213e-125 | -8.615850e-47 |
| Msa0507960 | Msa1091710 | 0.808467 | 3.053447e-50 | -8.615850e-47 |
| Msa0521260 | Msa1091710 | 0.806436 | 8.232984e-50 | -8.615850e-47 |
| Msa0550990 | Msa1091710 | 0.800651 | 1.303901e-48 | -8.615850e-47 |
| Msa0576020 | Msa1091710 | 0.810523 | 1.104858e-50 | -8.615850e-47 |
| Msa0582860 | Msa1091710 | 0.802479 | 5.502001e-49 | -8.615850e-47 |
| Msa0591250 | Msa1091710 | 0.817615 | 3.008797e-52 | -8.615850e-47 |
| Msa0591340 | Msa1091710 | 0.833474 | 5.224224e-56 | -8.615850e-47 |
| Msa0867660 | Msa1091710 | 0.837946 | 3.850625e-57 | -8.615850e-47 |
| Msa0869420 | Msa1091710 | 0.817266 | 3.604694e-52 | -8.615850e-47 |
| Msa0881530 | Msa1091710 | 0.825251 | 5.191420e-54 | -8.615850e-47 |
| Msa0908260 | Msa1091710 | 0.845585 | 3.704304e-59 | -8.615850e-47 |
| Msa0908270 | Msa1091710 | 0.816947 | 4.251577e-52 | -8.615850e-47 |
| Msa0908280 | Msa1091710 | 0.821524 | 3.856445e-53 | -8.615850e-47 |
| Msa0908350 | Msa1091710 | 0.808982 | 2.369291e-50 | -8.615850e-47 |
| Msa0908470 | Msa1091710 | 0.843931 | 1.034134e-58 | -8.615850e-47 |
| Msa0908500 | Msa1091710 | 0.815266 | 1.009594e-51 | -8.615850e-47 |
| Msa0908510 | Msa1091710 | 0.836054 | 1.171219e-56 | -8.615850e-47 |
| Msa0908630 | Msa1091710 | 0.856967 | 2.249016e-62 | -8.615850e-47 |
| Msa0908690 | Msa1091710 | 0.843924 | 1.038970e-58 | -8.615850e-47 |
| Msa0908700 | Msa1091710 | 0.838673 | 2.500923e-57 | -8.615850e-47 |
| Msa0911220 | Msa1091710 | 0.806087 | 9.751236e-50 | -8.615850e-47 |
| Msa0924830 | Msa1091710 | 0.811086 | 8.347218e-51 | -8.615850e-47 |
| Msa0924840 | Msa1091710 | 0.864357 | 1.288515e-64 | -8.615850e-47 |
| Msa0924900 | Msa1091710 | 0.841264 | 5.281457e-58 | -8.615850e-47 |
| Msa0924980 | Msa1091710 | 0.941784 | 2.274230e-101 | -8.615850e-47 |
| Msa0925030 | Msa1091710 | 0.955754 | 1.461961e-113 | -8.615850e-47 |
| Msa0931000 | Msa1091710 | 0.958176 | 4.499222e-116 | -8.615850e-47 |
| Msa0931180 | Msa1091710 | 0.807241 | 5.565196e-50 | -8.615850e-47 |
| Msa0971690 | Msa1091710 | 0.810626 | 1.049959e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091710 | MtrunA17_CPg0492821 | 69.512 | 82 | 25 | 0 | 1 | 82 | 1 | 82 | 6.16e-33 | 109 |
| Msa1091710 | MtrunA17_Chr4g0016851 | 69.512 | 82 | 25 | 0 | 1 | 82 | 1 | 82 | 6.16e-33 | 109 |
| Msa1091710 | MtrunA17_Chr4g0015751 | 69.512 | 82 | 25 | 0 | 1 | 82 | 1 | 82 | 6.16e-33 | 109 |
| Msa1091710 | MtrunA17_Chr4g0017011 | 96.296 | 54 | 2 | 0 | 1 | 54 | 1 | 54 | 1.52e-32 | 108 |
| Msa1091710 | MtrunA17_Chr5g0423051 | 94.444 | 54 | 3 | 0 | 1 | 54 | 1 | 54 | 3.59e-31 | 105 |
| Msa1091710 | MtrunA17_Chr4g0016841 | 61.538 | 91 | 21 | 2 | 14 | 104 | 9 | 85 | 3.80e-31 | 105 |
| Msa1091710 | MtrunA17_Chr6g0451331 | 90.323 | 31 | 3 | 0 | 24 | 54 | 41 | 71 | 5.11e-14 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091710 | ATCG00580.1 | 69.512 | 82 | 25 | 0 | 1 | 82 | 1 | 82 | 9.51e-34 | 112 |
| Msa1091710 | ATCG00560.1 | 97.297 | 37 | 1 | 0 | 68 | 104 | 2 | 38 | 3.55e-19 | 74.3 |
Find 25 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTAGCTTACGATGTATT+TGG | 0.244623 | 7_3:-7163136 | Msa1091710:CDS |
| GTAGCTCTATAATTCGGATT+AGG | 0.338134 | 7_3:+7162874 | None:intergenic |
| ATAACCAACCCGCAATGAAT+AGG | 0.348030 | 7_3:+7163170 | None:intergenic |
| TTATTACCAGTATTCGATAC+TGG | 0.348418 | 7_3:-7163219 | Msa1091710:CDS |
| TATGTGGAGCTCGGCATGTC+TGG | 0.349487 | 7_3:-7163271 | Msa1091710:exon |
| ATACCCTCCCTATTCATTGC+GGG | 0.391873 | 7_3:-7163178 | Msa1091710:CDS |
| TAACCAACCCGCAATGAATA+GGG | 0.406851 | 7_3:+7163171 | None:intergenic |
| TGAATCGTACCAGTCTCTAC+TGG | 0.410190 | 7_3:-7162816 | Msa1091710:CDS |
| CTTTCTGTAAAATACTCGTT+TGG | 0.412027 | 7_3:+7163103 | None:intergenic |
| TGTGTCGTAGCTCTATAATT+CGG | 0.415726 | 7_3:+7162868 | None:intergenic |
| AATAATCCAGTATCGAATAC+TGG | 0.423687 | 7_3:+7163213 | None:intergenic |
| CTCGGCATGTCTGGAAGCAC+AGG | 0.508926 | 7_3:-7163262 | Msa1091710:exon |
| ATTCGGATTAGGTTTATCGT+TGG | 0.512045 | 7_3:+7162885 | None:intergenic |
| GAATCGTACCAGTCTCTACT+GGG | 0.515213 | 7_3:-7162815 | Msa1091710:CDS |
| TTTGACTGTATAAGAATATG+TGG | 0.517465 | 7_3:-7163287 | None:intergenic |
| GGTTGGTTATTTGTCAGCAC+GGG | 0.523918 | 7_3:-7163157 | Msa1091710:CDS |
| GGGTTGGTTATTTGTCAGCA+CGG | 0.532372 | 7_3:-7163158 | Msa1091710:CDS |
| CCTCCCTATTCATTGCGGGT+TGG | 0.536548 | 7_3:-7163174 | Msa1091710:CDS |
| GTAAAATACTCGTTTGGACG+AGG | 0.550593 | 7_3:+7163109 | None:intergenic |
| TAATAAACCCCAGTAGAGAC+TGG | 0.572062 | 7_3:+7162807 | None:intergenic |
| GTATAAGAATATGTGGAGCT+CGG | 0.584815 | 7_3:-7163280 | None:intergenic |
| TATACCCTCCCTATTCATTG+CGG | 0.586067 | 7_3:-7163179 | Msa1091710:CDS |
| CAACCCGCAATGAATAGGGA+GGG | 0.665638 | 7_3:+7163175 | None:intergenic |
| CCAACCCGCAATGAATAGGG+AGG | 0.678708 | 7_3:+7163174 | None:intergenic |
| AATCGTACCAGTCTCTACTG+GGG | 0.711157 | 7_3:-7162814 | Msa1091710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTTAGTAGATCTTTTT+AGG | - | chr7_3:7163009-7163028 | Msa1091710:intron | 20.0% |
| !!! | ATTCAACATTTTGTTCATTT+GGG | + | chr7_3:7163199-7163218 | None:intergenic | 20.0% |
| !!! | AATTCAACATTTTGTTCATT+TGG | + | chr7_3:7163200-7163219 | None:intergenic | 20.0% |
| ! | TTATTAATGGAATTCCTTGT+CGG | + | chr7_3:7162958-7162977 | None:intergenic | 25.0% |
| !!! | ATTTAGTAGATCTTTTTAGG+AGG | - | chr7_3:7163012-7163031 | Msa1091710:intron | 25.0% |
| ! | TATTGATCCCAAAAAAAAGA+CGG | + | chr7_3:7163113-7163132 | None:intergenic | 25.0% |
| TTATTACCAGTATTCGATAC+TGG | - | chr7_3:7162816-7162835 | Msa1091710:CDS | 30.0% | |
| ! | AATAATCCAGTATCGAATAC+TGG | + | chr7_3:7162825-7162844 | None:intergenic | 30.0% |
| CTTTCTGTAAAATACTCGTT+TGG | + | chr7_3:7162935-7162954 | None:intergenic | 30.0% | |
| CAAGGAATTCCATTAATAAC+TGG | - | chr7_3:7162959-7162978 | Msa1091710:intron | 30.0% | |
| GTTGTTCCAAAGAATCAAAA+CGG | + | chr7_3:7162985-7163004 | None:intergenic | 30.0% | |
| AACCATCGTACTGTAAAAAT+GGG | + | chr7_3:7163064-7163083 | None:intergenic | 30.0% | |
| ! | GGTTTAGCTTACGATGTATT+TGG | - | chr7_3:7162899-7162918 | Msa1091710:intron | 35.0% |
| ! | TATTTTACAGAAAGCCGACA+AGG | - | chr7_3:7162941-7162960 | Msa1091710:intron | 35.0% |
| TCAAAACGGCCAGTTATTAA+TGG | + | chr7_3:7162971-7162990 | None:intergenic | 35.0% | |
| TCGTACTGTAAAAATGGGAT+AGG | + | chr7_3:7163059-7163078 | None:intergenic | 35.0% | |
| !! | ATCCCATTTTTACAGTACGA+TGG | - | chr7_3:7163059-7163078 | Msa1091710:intron | 35.0% |
| CAACCATCGTACTGTAAAAA+TGG | + | chr7_3:7163065-7163084 | None:intergenic | 35.0% | |
| ! | CATTTTTACAGTACGATGGT+TGG | - | chr7_3:7163063-7163082 | Msa1091710:intron | 35.0% |
| ! | ATTCGGATTAGGTTTATCGT+TGG | + | chr7_3:7163153-7163172 | None:intergenic | 35.0% |
| ! | GTAGCTCTATAATTCGGATT+AGG | + | chr7_3:7163164-7163183 | None:intergenic | 35.0% |
| ! | TGTGTCGTAGCTCTATAATT+CGG | + | chr7_3:7163170-7163189 | None:intergenic | 35.0% |
| TATACCCTCCCTATTCATTG+CGG | - | chr7_3:7162856-7162875 | Msa1091710:CDS | 40.0% | |
| TAACCAACCCGCAATGAATA+GGG | + | chr7_3:7162867-7162886 | None:intergenic | 40.0% | |
| ATAACCAACCCGCAATGAAT+AGG | + | chr7_3:7162868-7162887 | None:intergenic | 40.0% | |
| GTAAAATACTCGTTTGGACG+AGG | + | chr7_3:7162929-7162948 | None:intergenic | 40.0% | |
| !!! | AACTGGCCGTTTTGATTCTT+TGG | - | chr7_3:7162976-7162995 | Msa1091710:intron | 40.0% |
| TAGGTCCTATCTATGGTCAT+TGG | + | chr7_3:7163040-7163059 | None:intergenic | 40.0% | |
| AATGGGATAGGTCCTATCTA+TGG | + | chr7_3:7163047-7163066 | None:intergenic | 40.0% | |
| !!! | GTACCCACCGTCTTTTTTTT+GGG | - | chr7_3:7163103-7163122 | Msa1091710:intron | 40.0% |
| GATCCCAAAAAAAAGACGGT+GGG | + | chr7_3:7163109-7163128 | None:intergenic | 40.0% | |
| TGATCCCAAAAAAAAGACGG+TGG | + | chr7_3:7163110-7163129 | None:intergenic | 40.0% | |
| TAATAAACCCCAGTAGAGAC+TGG | + | chr7_3:7163231-7163250 | None:intergenic | 40.0% | |
| ATACCCTCCCTATTCATTGC+GGG | - | chr7_3:7162857-7162876 | Msa1091710:CDS | 45.0% | |
| !! | GGGTTGGTTATTTGTCAGCA+CGG | - | chr7_3:7162877-7162896 | Msa1091710:CDS | 45.0% |
| ! | GGTTGGTTATTTGTCAGCAC+GGG | - | chr7_3:7162878-7162897 | Msa1091710:CDS | 45.0% |
| AGGCTCCAATGACCATAGAT+AGG | - | chr7_3:7163032-7163051 | Msa1091710:intron | 45.0% | |
| !!! | GGTACCCACCGTCTTTTTTT+TGG | - | chr7_3:7163102-7163121 | Msa1091710:intron | 45.0% |
| TGAATCGTACCAGTCTCTAC+TGG | - | chr7_3:7163219-7163238 | Msa1091710:CDS | 45.0% | |
| GAATCGTACCAGTCTCTACT+GGG | - | chr7_3:7163220-7163239 | Msa1091710:CDS | 45.0% | |
| AATCGTACCAGTCTCTACTG+GGG | - | chr7_3:7163221-7163240 | Msa1091710:CDS | 45.0% | |
| CAACCCGCAATGAATAGGGA+GGG | + | chr7_3:7162863-7162882 | None:intergenic | 50.0% | |
| ! | GTACGATGGTTGGCTGTTCA+CGG | - | chr7_3:7163073-7163092 | Msa1091710:intron | 50.0% |
| TATGTGGAGCTCGGCATGTC+TGG | - | chr7_3:7162764-7162783 | Msa1091710:CDS | 55.0% | |
| CCAACCCGCAATGAATAGGG+AGG | + | chr7_3:7162864-7162883 | None:intergenic | 55.0% | |
| CCTCCCTATTCATTGCGGGT+TGG | - | chr7_3:7162861-7162880 | Msa1091710:CDS | 55.0% | |
| !! | GTTGGCTGTTCACGGACTAG+CGG | - | chr7_3:7163081-7163100 | Msa1091710:intron | 55.0% |
| ! | CTCGGCATGTCTGGAAGCAC+AGG | - | chr7_3:7162773-7162792 | Msa1091710:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 7162762 | 7163295 | 7162762 | ID=Msa1091710;Name=Msa1091710 |
| chr7_3 | mRNA | 7162762 | 7163295 | 7162762 | ID=Msa1091710-mRNA-1;Parent=Msa1091710;Name=Msa1091710-mRNA-1;_AED=0.22;_eAED=0.22;_QI=17|0|0|1|0|0|2|0|104 |
| chr7_3 | exon | 7163118 | 7163295 | 7163118 | ID=Msa1091710-mRNA-1:exon:2255;Parent=Msa1091710-mRNA-1 |
| chr7_3 | exon | 7162762 | 7162912 | 7162762 | ID=Msa1091710-mRNA-1:exon:2254;Parent=Msa1091710-mRNA-1 |
| chr7_3 | five_prime_UTR | 7163279 | 7163295 | 7163279 | ID=Msa1091710-mRNA-1:five_prime_utr;Parent=Msa1091710-mRNA-1 |
| chr7_3 | CDS | 7163118 | 7163278 | 7163118 | ID=Msa1091710-mRNA-1:cds;Parent=Msa1091710-mRNA-1 |
| chr7_3 | CDS | 7162762 | 7162912 | 7162762 | ID=Msa1091710-mRNA-1:cds;Parent=Msa1091710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
