Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449910 | AES88212.1 | 75.735 | 136 | 1 | 1 | 1 | 104 | 1 | 136 | 2.57e-61 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449910 | sp|Q2PMR7|PSBE_SOYBN | 71.951 | 82 | 23 | 0 | 1 | 82 | 1 | 82 | 7.78e-34 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449910 | A0A6A5LQW0 | 72.527 | 91 | 18 | 1 | 1 | 84 | 1 | 91 | 7.76e-36 | 126 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0449910 | 0.826923 | 2.078599e-54 | -8.615850e-47 |
| Msa0017300 | Msa0449910 | 0.832602 | 8.606550e-56 | -8.615850e-47 |
| Msa0029520 | Msa0449910 | 0.851346 | 9.423909e-61 | -8.615850e-47 |
| Msa0033840 | Msa0449910 | 0.871607 | 6.008434e-67 | -8.615850e-47 |
| Msa0065670 | Msa0449910 | 0.827210 | 1.774241e-54 | -8.615850e-47 |
| Msa0067590 | Msa0449910 | 0.818001 | 2.461628e-52 | -8.615850e-47 |
| Msa0075990 | Msa0449910 | 0.813152 | 2.958299e-51 | -8.615850e-47 |
| Msa0080060 | Msa0449910 | 0.805305 | 1.423179e-49 | -8.615850e-47 |
| Msa0081610 | Msa0449910 | 0.870624 | 1.268082e-66 | -8.615850e-47 |
| Msa0095810 | Msa0449910 | 0.817458 | 3.264336e-52 | -8.615850e-47 |
| Msa0098500 | Msa0449910 | 0.815687 | 8.138511e-52 | -8.615850e-47 |
| Msa0111110 | Msa0449910 | 0.833442 | 5.321344e-56 | -8.615850e-47 |
| Msa0126750 | Msa0449910 | 0.821907 | 3.144903e-53 | -8.615850e-47 |
| Msa0138990 | Msa0449910 | 0.809863 | 1.533236e-50 | -8.615850e-47 |
| Msa0154890 | Msa0449910 | 0.810052 | 1.396061e-50 | -8.615850e-47 |
| Msa0158890 | Msa0449910 | 0.808261 | 3.378268e-50 | -8.615850e-47 |
| Msa0168770 | Msa0449910 | 0.824683 | 7.068867e-54 | -8.615850e-47 |
| Msa0173950 | Msa0449910 | 0.881044 | 3.327507e-70 | -8.615850e-47 |
| Msa0221850 | Msa0449910 | 0.967065 | 9.101512e-127 | -8.615850e-47 |
| Msa0225790 | Msa0449910 | 0.811446 | 6.972031e-51 | -8.615850e-47 |
| Msa0368450 | Msa0449910 | 0.828924 | 6.858322e-55 | -8.615850e-47 |
| Msa0380400 | Msa0449910 | 0.803967 | 2.707863e-49 | -8.615850e-47 |
| Msa0389080 | Msa0449910 | 0.870381 | 1.523808e-66 | -8.615850e-47 |
| Msa0398600 | Msa0449910 | 0.889007 | 3.558790e-73 | -8.615850e-47 |
| Msa0401860 | Msa0449910 | 0.852218 | 5.332257e-61 | -8.615850e-47 |
| Msa0405460 | Msa0449910 | 0.876301 | 1.556933e-68 | -8.615850e-47 |
| Msa0405470 | Msa0449910 | 0.889196 | 3.007972e-73 | -8.615850e-47 |
| Msa0405550 | Msa0449910 | 0.878877 | 1.966818e-69 | -8.615850e-47 |
| Msa0449910 | Msa0461620 | 0.824461 | 7.972368e-54 | -8.615850e-47 |
| Msa0449910 | Msa0476890 | 0.829568 | 4.786342e-55 | -8.615850e-47 |
| Msa0449910 | Msa0483970 | 0.876067 | 1.875139e-68 | -8.615850e-47 |
| Msa0449910 | Msa0483980 | 0.825072 | 5.720830e-54 | -8.615850e-47 |
| Msa0449910 | Msa0493180 | 0.975958 | 6.443162e-141 | -8.615850e-47 |
| Msa0449910 | Msa0507960 | 0.815736 | 7.935782e-52 | -8.615850e-47 |
| Msa0449910 | Msa0521260 | 0.810879 | 9.256012e-51 | -8.615850e-47 |
| Msa0449910 | Msa0550990 | 0.808130 | 3.602666e-50 | -8.615850e-47 |
| Msa0449910 | Msa0558780 | 0.812818 | 3.501516e-51 | -8.615850e-47 |
| Msa0449910 | Msa0559450 | 0.804143 | 2.488428e-49 | -8.615850e-47 |
| Msa0449910 | Msa0576020 | 0.806711 | 7.205223e-50 | -8.615850e-47 |
| Msa0449910 | Msa0590620 | 0.801439 | 8.998671e-49 | -8.615850e-47 |
| Msa0449910 | Msa0591250 | 0.844680 | 6.505765e-59 | -8.615850e-47 |
| Msa0449910 | Msa0591340 | 0.863493 | 2.393318e-64 | -8.615850e-47 |
| Msa0449910 | Msa0592330 | -0.802004 | 6.891081e-49 | -8.615850e-47 |
| Msa0449910 | Msa0606340 | 0.801210 | 1.002648e-48 | -8.615850e-47 |
| Msa0449910 | Msa0606350 | 0.826633 | 2.437832e-54 | -8.615850e-47 |
| Msa0449910 | Msa0711110 | 0.816489 | 5.387579e-52 | -8.615850e-47 |
| Msa0449910 | Msa0779450 | 0.814415 | 1.558989e-51 | -8.615850e-47 |
| Msa0449910 | Msa0829210 | 0.821727 | 3.461266e-53 | -8.615850e-47 |
| Msa0449910 | Msa0829250 | 0.816187 | 6.293219e-52 | -8.615850e-47 |
| Msa0449910 | Msa0832160 | 0.825096 | 5.645999e-54 | -8.615850e-47 |
| Msa0449910 | Msa0867660 | 0.863037 | 3.313099e-64 | -8.615850e-47 |
| Msa0449910 | Msa0869420 | 0.828143 | 1.058762e-54 | -8.615850e-47 |
| Msa0449910 | Msa0881530 | 0.818165 | 2.260327e-52 | -8.615850e-47 |
| Msa0449910 | Msa0908260 | 0.866601 | 2.529805e-65 | -8.615850e-47 |
| Msa0449910 | Msa0908270 | 0.849221 | 3.717310e-60 | -8.615850e-47 |
| Msa0449910 | Msa0908280 | 0.844436 | 7.570327e-59 | -8.615850e-47 |
| Msa0449910 | Msa0908350 | 0.838320 | 3.084579e-57 | -8.615850e-47 |
| Msa0449910 | Msa0908360 | 0.818647 | 1.757095e-52 | -8.615850e-47 |
| Msa0449910 | Msa0908460 | 0.803182 | 3.937638e-49 | -8.615850e-47 |
| Msa0449910 | Msa0908470 | 0.866665 | 2.415717e-65 | -8.615850e-47 |
| Msa0449910 | Msa0908490 | 0.814161 | 1.773453e-51 | -8.615850e-47 |
| Msa0449910 | Msa0908500 | 0.840707 | 7.392576e-58 | -8.615850e-47 |
| Msa0449910 | Msa0908510 | 0.862465 | 4.973285e-64 | -8.615850e-47 |
| Msa0449910 | Msa0908520 | 0.820382 | 7.065403e-53 | -8.615850e-47 |
| Msa0449910 | Msa0908630 | 0.877953 | 4.152553e-69 | -8.615850e-47 |
| Msa0449910 | Msa0908690 | 0.866024 | 3.856443e-65 | -8.615850e-47 |
| Msa0449910 | Msa0908700 | 0.863031 | 3.327987e-64 | -8.615850e-47 |
| Msa0449910 | Msa0908710 | 0.800162 | 1.639955e-48 | -8.615850e-47 |
| Msa0449910 | Msa0911180 | 0.826384 | 2.793837e-54 | -8.615850e-47 |
| Msa0449910 | Msa0911220 | 0.832017 | 1.201215e-55 | -8.615850e-47 |
| Msa0449910 | Msa0924840 | 0.901957 | 1.582786e-78 | -8.615850e-47 |
| Msa0449910 | Msa0924900 | 0.862613 | 4.475785e-64 | -8.615850e-47 |
| Msa0449910 | Msa0924980 | 0.973280 | 3.671390e-136 | -8.615850e-47 |
| Msa0449910 | Msa0925030 | 0.979762 | 1.098986e-148 | -8.615850e-47 |
| Msa0449910 | Msa0931000 | 0.970360 | 1.688130e-131 | -8.615850e-47 |
| Msa0449910 | Msa0945520 | 0.809653 | 1.701160e-50 | -8.615850e-47 |
| Msa0449910 | Msa0963720 | 0.804979 | 1.665465e-49 | -8.615850e-47 |
| Msa0449910 | Msa0971690 | 0.822348 | 2.486028e-53 | -8.615850e-47 |
| Msa0449910 | Msa0982090 | 0.842390 | 2.662695e-58 | -8.615850e-47 |
| Msa0449910 | Msa0983600 | 0.865917 | 4.169409e-65 | -8.615850e-47 |
| Msa0449910 | Msa0983610 | 0.863707 | 2.053519e-64 | -8.615850e-47 |
| Msa0449910 | Msa0983620 | 0.802900 | 4.504188e-49 | -8.615850e-47 |
| Msa0449910 | Msa1086490 | 0.819844 | 9.383674e-53 | -8.615850e-47 |
| Msa0449910 | Msa1086670 | 0.825740 | 3.975280e-54 | -8.615850e-47 |
| Msa0449910 | Msa1086760 | 0.858131 | 1.016787e-62 | -8.615850e-47 |
| Msa0449910 | Msa1086770 | 0.859065 | 5.351363e-63 | -8.615850e-47 |
| Msa0449910 | Msa1086940 | 0.864712 | 9.981729e-65 | -8.615850e-47 |
| Msa0449910 | Msa1087070 | 0.867723 | 1.108717e-65 | -8.615850e-47 |
| Msa0449910 | Msa1087080 | 0.854137 | 1.504180e-61 | -8.615850e-47 |
| Msa0449910 | Msa1087090 | 0.863867 | 1.831234e-64 | -8.615850e-47 |
| Msa0449910 | Msa1091710 | 0.954249 | 4.523614e-112 | -8.615850e-47 |
| Msa0449910 | Msa1181370 | 0.837012 | 6.682455e-57 | -8.615850e-47 |
| Msa0449910 | Msa1260640 | 0.808803 | 2.588128e-50 | -8.615850e-47 |
| Msa0449910 | Msa1273620 | 0.870799 | 1.110356e-66 | -8.615850e-47 |
| Msa0449910 | Msa1305970 | 0.834190 | 3.458732e-56 | -8.615850e-47 |
| Msa0449910 | Msa1311600 | 0.845342 | 4.311729e-59 | -8.615850e-47 |
| Msa0449910 | Msa1354360 | 0.858331 | 8.863029e-63 | -8.615850e-47 |
| Msa0449910 | Msa1354370 | 0.846916 | 1.607420e-59 | -8.615850e-47 |
| Msa0449910 | Msa1354400 | 0.864595 | 1.086157e-64 | -8.615850e-47 |
| Msa0449910 | Msa1354510 | 0.804985 | 1.660693e-49 | -8.615850e-47 |
| Msa0449910 | Msa1354520 | 0.858766 | 6.574187e-63 | -8.615850e-47 |
| Msa0449910 | Msa1354530 | 0.862887 | 3.685962e-64 | -8.615850e-47 |
| Msa0449910 | Msa1354650 | 0.863486 | 2.406277e-64 | -8.615850e-47 |
| Msa0449910 | Msa1354660 | 0.863923 | 1.759913e-64 | -8.615850e-47 |
| Msa0449910 | Msa1354780 | 0.863394 | 2.569602e-64 | -8.615850e-47 |
| Msa0449910 | Msa1354790 | 0.865136 | 7.351438e-65 | -8.615850e-47 |
| Msa0449910 | Msa1354960 | 0.863360 | 2.632747e-64 | -8.615850e-47 |
| Msa0449910 | Msa1354970 | 0.805792 | 1.125148e-49 | -8.615850e-47 |
| Msa0449910 | Msa1365980 | 0.802184 | 6.327461e-49 | -8.615850e-47 |
| Msa0449910 | Msa1365990 | 0.864328 | 1.316421e-64 | -8.615850e-47 |
| Msa0449910 | Msa1366020 | 0.862621 | 4.451847e-64 | -8.615850e-47 |
| Msa0449910 | Msa1366030 | 0.863696 | 2.070247e-64 | -8.615850e-47 |
| Msa0449910 | Msa1366060 | 0.861789 | 8.014818e-64 | -8.615850e-47 |
| Msa0449910 | Msa1366070 | 0.800287 | 1.546827e-48 | -8.615850e-47 |
| Msa0449910 | Msa1368250 | 0.802751 | 4.834288e-49 | -8.615850e-47 |
| Msa0449910 | Msa1368260 | 0.865550 | 5.443376e-65 | -8.615850e-47 |
| Msa0449910 | Msa1380180 | 0.800981 | 1.116667e-48 | -8.615850e-47 |
| Msa0449910 | Msa1382380 | 0.842848 | 2.012962e-58 | -8.615850e-47 |
| Msa0449910 | Msa1385360 | 0.867004 | 1.883867e-65 | -8.615850e-47 |
| Msa0449910 | Msa1385390 | 0.861312 | 1.120449e-63 | -8.615850e-47 |
| Msa0449910 | Msa1389670 | 0.811098 | 8.295521e-51 | -8.615850e-47 |
| Msa0449910 | Msa1391120 | 0.803737 | 3.021920e-49 | -8.615850e-47 |
| Msa0449910 | Msa1391130 | 0.864004 | 1.661051e-64 | -8.615850e-47 |
| Msa0449910 | Msa1391140 | 0.863724 | 2.029591e-64 | -8.615850e-47 |
| Msa0449910 | Msa1391260 | 0.860672 | 1.754197e-63 | -8.615850e-47 |
| Msa0449910 | Msa1410480 | 0.806084 | 9.766117e-50 | -8.615850e-47 |
| Msa0449910 | Msa1440140 | 0.816664 | 4.920367e-52 | -8.615850e-47 |
| Msa0261350 | Msa0449910 | 0.807395 | 5.161727e-50 | -8.615850e-47 |
| Msa0268210 | Msa0449910 | 0.805072 | 1.592897e-49 | -8.615850e-47 |
| Msa0268450 | Msa0449910 | 0.807335 | 5.314697e-50 | -8.615850e-47 |
| Msa0268660 | Msa0449910 | 0.814251 | 1.694338e-51 | -8.615850e-47 |
| Msa0268670 | Msa0449910 | 0.830792 | 2.405956e-55 | -8.615850e-47 |
| Msa0268880 | Msa0449910 | 0.802289 | 6.020962e-49 | -8.615850e-47 |
| Msa0269090 | Msa0449910 | 0.803763 | 2.984922e-49 | -8.615850e-47 |
| Msa0269170 | Msa0449910 | 0.865238 | 6.827826e-65 | -8.615850e-47 |
| Msa0334450 | Msa0449910 | 0.806272 | 8.916138e-50 | -8.615850e-47 |
| Msa0340700 | Msa0449910 | 0.812156 | 4.885346e-51 | -8.615850e-47 |
| Msa0360790 | Msa0449910 | 0.810039 | 1.405000e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449910 | MtrunA17_CPg0492821 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 6.38e-34 | 112 |
| Msa0449910 | MtrunA17_Chr4g0016851 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 6.38e-34 | 112 |
| Msa0449910 | MtrunA17_Chr4g0015751 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 6.38e-34 | 112 |
| Msa0449910 | MtrunA17_Chr4g0017011 | 98.148 | 54 | 1 | 0 | 1 | 54 | 1 | 54 | 2.07e-33 | 111 |
| Msa0449910 | MtrunA17_Chr5g0423051 | 96.296 | 54 | 2 | 0 | 1 | 54 | 1 | 54 | 3.52e-32 | 107 |
| Msa0449910 | MtrunA17_Chr4g0016841 | 61.538 | 91 | 21 | 2 | 14 | 104 | 9 | 85 | 4.52e-31 | 105 |
| Msa0449910 | MtrunA17_Chr6g0451331 | 90.323 | 31 | 3 | 0 | 24 | 54 | 41 | 71 | 5.28e-14 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449910 | ATCG00580.1 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 1.19e-34 | 114 |
| Msa0449910 | ATCG00560.1 | 97.297 | 37 | 1 | 0 | 68 | 104 | 2 | 38 | 3.75e-19 | 73.9 |
Find 25 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTAGCTTACGATGTATT+TGG | 0.244623 | 3_3:+34884451 | Msa0449910:CDS |
| GTAGCTCTATAATTCGGATT+AGG | 0.338134 | 3_3:-34884713 | None:intergenic |
| ATAACCAACCCGCAATGAAT+AGG | 0.348030 | 3_3:-34884417 | None:intergenic |
| TTATTACCAGTATTCGATAC+TGG | 0.348418 | 3_3:+34884368 | Msa0449910:CDS |
| TATGTGGAGCTCGGCATGTC+TGG | 0.349487 | 3_3:+34884316 | Msa0449910:exon |
| ATACCCTCCCTATTCATTGC+GGG | 0.391873 | 3_3:+34884409 | Msa0449910:CDS |
| TAACCAACCCGCAATGAATA+GGG | 0.406851 | 3_3:-34884416 | None:intergenic |
| TGAATCGTACCAGTCTCTAC+TGG | 0.410190 | 3_3:+34884771 | Msa0449910:CDS |
| CTTTCTGTAAAATACTCGTT+TGG | 0.412027 | 3_3:-34884484 | None:intergenic |
| TGTGTCGTAGCTCTATAATT+CGG | 0.415726 | 3_3:-34884719 | None:intergenic |
| AATAATCCAGTATCGAATAC+TGG | 0.423687 | 3_3:-34884374 | None:intergenic |
| CTCGGCATGTCTGGAAGCAC+AGG | 0.508926 | 3_3:+34884325 | Msa0449910:exon |
| ATTCGGATTAGGTTTATCGT+TGG | 0.512045 | 3_3:-34884702 | None:intergenic |
| GAATCGTACCAGTCTCTACT+GGG | 0.515213 | 3_3:+34884772 | Msa0449910:CDS |
| TTTGACTGTATAAGAATATG+TGG | 0.517465 | 3_3:+34884300 | None:intergenic |
| GGTTGGTTATTTGTCAGCAC+GGG | 0.523918 | 3_3:+34884430 | Msa0449910:CDS |
| GGGTTGGTTATTTGTCAGCA+CGG | 0.532372 | 3_3:+34884429 | Msa0449910:CDS |
| CCTCCCTATTCATTGCGGGT+TGG | 0.536548 | 3_3:+34884413 | Msa0449910:CDS |
| GTAAAATACTCGTTTGGACG+AGG | 0.550593 | 3_3:-34884478 | None:intergenic |
| TAATAAACCCCAGTAGAGAC+TGG | 0.572062 | 3_3:-34884780 | None:intergenic |
| GTATAAGAATATGTGGAGCT+CGG | 0.584815 | 3_3:+34884307 | None:intergenic |
| TATACCCTCCCTATTCATTG+CGG | 0.586067 | 3_3:+34884408 | Msa0449910:CDS |
| CAACCCGCAATGAATAGGGA+GGG | 0.665638 | 3_3:-34884412 | None:intergenic |
| CCAACCCGCAATGAATAGGG+AGG | 0.678708 | 3_3:-34884413 | None:intergenic |
| AATCGTACCAGTCTCTACTG+GGG | 0.711157 | 3_3:+34884773 | Msa0449910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTTAGTAGATCTTTTT+AGG | + | chr3_3:34884561-34884580 | Msa0449910:intron | 20.0% |
| !!! | ATTCAACATTTTGTTCATTT+GGG | - | chr3_3:34884751-34884770 | None:intergenic | 20.0% |
| !!! | AATTCAACATTTTGTTCATT+TGG | - | chr3_3:34884752-34884771 | None:intergenic | 20.0% |
| ! | TTATTAATGGAATTCCTTGT+CGG | - | chr3_3:34884510-34884529 | None:intergenic | 25.0% |
| !!! | ATTTAGTAGATCTTTTTAGG+AGG | + | chr3_3:34884564-34884583 | Msa0449910:intron | 25.0% |
| ! | TATTGATCCCAAAAAAAAGA+CGG | - | chr3_3:34884665-34884684 | None:intergenic | 25.0% |
| TTATTACCAGTATTCGATAC+TGG | + | chr3_3:34884368-34884387 | Msa0449910:CDS | 30.0% | |
| ! | AATAATCCAGTATCGAATAC+TGG | - | chr3_3:34884377-34884396 | None:intergenic | 30.0% |
| CTTTCTGTAAAATACTCGTT+TGG | - | chr3_3:34884487-34884506 | None:intergenic | 30.0% | |
| CAAGGAATTCCATTAATAAC+TGG | + | chr3_3:34884511-34884530 | Msa0449910:intron | 30.0% | |
| GTTGTTCCAAAGAATCAAAA+CGG | - | chr3_3:34884537-34884556 | None:intergenic | 30.0% | |
| AACCATCGTACTGTAAAAAT+GGG | - | chr3_3:34884616-34884635 | None:intergenic | 30.0% | |
| ! | GGTTTAGCTTACGATGTATT+TGG | + | chr3_3:34884451-34884470 | Msa0449910:CDS | 35.0% |
| ! | TATTTTACAGAAAGCCGACA+AGG | + | chr3_3:34884493-34884512 | Msa0449910:intron | 35.0% |
| TCAAAACGGCCAGTTATTAA+TGG | - | chr3_3:34884523-34884542 | None:intergenic | 35.0% | |
| TCGTACTGTAAAAATGGGAT+AGG | - | chr3_3:34884611-34884630 | None:intergenic | 35.0% | |
| !! | ATCCCATTTTTACAGTACGA+TGG | + | chr3_3:34884611-34884630 | Msa0449910:intron | 35.0% |
| CAACCATCGTACTGTAAAAA+TGG | - | chr3_3:34884617-34884636 | None:intergenic | 35.0% | |
| ! | CATTTTTACAGTACGATGGT+TGG | + | chr3_3:34884615-34884634 | Msa0449910:intron | 35.0% |
| ! | ATTCGGATTAGGTTTATCGT+TGG | - | chr3_3:34884705-34884724 | None:intergenic | 35.0% |
| ! | GTAGCTCTATAATTCGGATT+AGG | - | chr3_3:34884716-34884735 | None:intergenic | 35.0% |
| ! | TGTGTCGTAGCTCTATAATT+CGG | - | chr3_3:34884722-34884741 | None:intergenic | 35.0% |
| TATACCCTCCCTATTCATTG+CGG | + | chr3_3:34884408-34884427 | Msa0449910:CDS | 40.0% | |
| TAACCAACCCGCAATGAATA+GGG | - | chr3_3:34884419-34884438 | None:intergenic | 40.0% | |
| ATAACCAACCCGCAATGAAT+AGG | - | chr3_3:34884420-34884439 | None:intergenic | 40.0% | |
| GTAAAATACTCGTTTGGACG+AGG | - | chr3_3:34884481-34884500 | None:intergenic | 40.0% | |
| !!! | AACTGGCCGTTTTGATTCTT+TGG | + | chr3_3:34884528-34884547 | Msa0449910:intron | 40.0% |
| TAGGTCCTATCTATGGTCAT+TGG | - | chr3_3:34884592-34884611 | None:intergenic | 40.0% | |
| AATGGGATAGGTCCTATCTA+TGG | - | chr3_3:34884599-34884618 | None:intergenic | 40.0% | |
| !!! | GTACCCACCGTCTTTTTTTT+GGG | + | chr3_3:34884655-34884674 | Msa0449910:intron | 40.0% |
| GATCCCAAAAAAAAGACGGT+GGG | - | chr3_3:34884661-34884680 | None:intergenic | 40.0% | |
| TGATCCCAAAAAAAAGACGG+TGG | - | chr3_3:34884662-34884681 | None:intergenic | 40.0% | |
| TAATAAACCCCAGTAGAGAC+TGG | - | chr3_3:34884783-34884802 | None:intergenic | 40.0% | |
| ATACCCTCCCTATTCATTGC+GGG | + | chr3_3:34884409-34884428 | Msa0449910:CDS | 45.0% | |
| !! | GGGTTGGTTATTTGTCAGCA+CGG | + | chr3_3:34884429-34884448 | Msa0449910:CDS | 45.0% |
| ! | GGTTGGTTATTTGTCAGCAC+GGG | + | chr3_3:34884430-34884449 | Msa0449910:CDS | 45.0% |
| AGGCTCCAATGACCATAGAT+AGG | + | chr3_3:34884584-34884603 | Msa0449910:intron | 45.0% | |
| !!! | GGTACCCACCGTCTTTTTTT+TGG | + | chr3_3:34884654-34884673 | Msa0449910:intron | 45.0% |
| TGAATCGTACCAGTCTCTAC+TGG | + | chr3_3:34884771-34884790 | Msa0449910:CDS | 45.0% | |
| GAATCGTACCAGTCTCTACT+GGG | + | chr3_3:34884772-34884791 | Msa0449910:CDS | 45.0% | |
| AATCGTACCAGTCTCTACTG+GGG | + | chr3_3:34884773-34884792 | Msa0449910:CDS | 45.0% | |
| CAACCCGCAATGAATAGGGA+GGG | - | chr3_3:34884415-34884434 | None:intergenic | 50.0% | |
| ! | GTACGATGGTTGGCTGTTCA+CGG | + | chr3_3:34884625-34884644 | Msa0449910:intron | 50.0% |
| TATGTGGAGCTCGGCATGTC+TGG | + | chr3_3:34884316-34884335 | Msa0449910:exon | 55.0% | |
| CCAACCCGCAATGAATAGGG+AGG | - | chr3_3:34884416-34884435 | None:intergenic | 55.0% | |
| CCTCCCTATTCATTGCGGGT+TGG | + | chr3_3:34884413-34884432 | Msa0449910:CDS | 55.0% | |
| !! | GTTGGCTGTTCACGGACTAG+CGG | + | chr3_3:34884633-34884652 | Msa0449910:intron | 55.0% |
| ! | CTCGGCATGTCTGGAAGCAC+AGG | + | chr3_3:34884325-34884344 | Msa0449910:exon | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 34884314 | 34884847 | 34884314 | ID=Msa0449910;Name=Msa0449910 |
| chr3_3 | mRNA | 34884314 | 34884847 | 34884314 | ID=Msa0449910-mRNA-1;Parent=Msa0449910;Name=Msa0449910-mRNA-1;_AED=0.22;_eAED=0.22;_QI=17|0|0|1|0|0|2|0|104 |
| chr3_3 | exon | 34884314 | 34884491 | 34884314 | ID=Msa0449910-mRNA-1:exon:6213;Parent=Msa0449910-mRNA-1 |
| chr3_3 | exon | 34884697 | 34884847 | 34884697 | ID=Msa0449910-mRNA-1:exon:6214;Parent=Msa0449910-mRNA-1 |
| chr3_3 | five_prime_UTR | 34884314 | 34884330 | 34884314 | ID=Msa0449910-mRNA-1:five_prime_utr;Parent=Msa0449910-mRNA-1 |
| chr3_3 | CDS | 34884331 | 34884491 | 34884331 | ID=Msa0449910-mRNA-1:cds;Parent=Msa0449910-mRNA-1 |
| chr3_3 | CDS | 34884697 | 34884847 | 34884697 | ID=Msa0449910-mRNA-1:cds;Parent=Msa0449910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
