Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924980 | KAH0447118.1 | 70.370 | 135 | 9 | 1 | 1 | 104 | 24 | 158 | 1.99e-56 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924980 | sp|Q2PMR7|PSBE_SOYBN | 71.951 | 82 | 23 | 0 | 1 | 82 | 1 | 82 | 7.78e-34 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0924980 | 0.828045 | 1.117914e-54 | -8.615850e-47 |
| Msa0017300 | Msa0924980 | 0.836709 | 7.984082e-57 | -8.615850e-47 |
| Msa0029520 | Msa0924980 | 0.845647 | 3.564246e-59 | -8.615850e-47 |
| Msa0033840 | Msa0924980 | 0.868216 | 7.697967e-66 | -8.615850e-47 |
| Msa0065670 | Msa0924980 | 0.830595 | 2.687839e-55 | -8.615850e-47 |
| Msa0067590 | Msa0924980 | 0.807396 | 5.160004e-50 | -8.615850e-47 |
| Msa0075990 | Msa0924980 | 0.815271 | 1.007198e-51 | -8.615850e-47 |
| Msa0080060 | Msa0924980 | 0.802654 | 5.062293e-49 | -8.615850e-47 |
| Msa0081610 | Msa0924980 | 0.869469 | 3.024316e-66 | -8.615850e-47 |
| Msa0095810 | Msa0924980 | 0.816749 | 4.709756e-52 | -8.615850e-47 |
| Msa0098500 | Msa0924980 | 0.816566 | 5.176942e-52 | -8.615850e-47 |
| Msa0111110 | Msa0924980 | 0.833360 | 5.578114e-56 | -8.615850e-47 |
| Msa0606340 | Msa0924980 | 0.805916 | 1.059543e-49 | -8.615850e-47 |
| Msa0606350 | Msa0924980 | 0.828441 | 8.975749e-55 | -8.615850e-47 |
| Msa0690100 | Msa0924980 | 0.802239 | 6.163893e-49 | -8.615850e-47 |
| Msa0711110 | Msa0924980 | 0.823628 | 1.250119e-53 | -8.615850e-47 |
| Msa0779450 | Msa0924980 | 0.807250 | 5.539684e-50 | -8.615850e-47 |
| Msa0788450 | Msa0924980 | 0.802192 | 6.303396e-49 | -8.615850e-47 |
| Msa0825570 | Msa0924980 | 0.802681 | 4.998998e-49 | -8.615850e-47 |
| Msa0829210 | Msa0924980 | 0.823261 | 1.523730e-53 | -8.615850e-47 |
| Msa0829250 | Msa0924980 | 0.821913 | 3.135356e-53 | -8.615850e-47 |
| Msa0832160 | Msa0924980 | 0.827953 | 1.176417e-54 | -8.615850e-47 |
| Msa0126750 | Msa0924980 | 0.809148 | 2.183557e-50 | -8.615850e-47 |
| Msa0138990 | Msa0924980 | 0.810691 | 1.016256e-50 | -8.615850e-47 |
| Msa0154890 | Msa0924980 | 0.805169 | 1.519831e-49 | -8.615850e-47 |
| Msa0168770 | Msa0924980 | 0.826765 | 2.266618e-54 | -8.615850e-47 |
| Msa0173580 | Msa0924980 | 0.804190 | 2.433520e-49 | -8.615850e-47 |
| Msa0173950 | Msa0924980 | 0.876506 | 1.322774e-68 | -8.615850e-47 |
| Msa0221850 | Msa0924980 | 0.961448 | 1.030823e-119 | -8.615850e-47 |
| Msa0225790 | Msa0924980 | 0.802216 | 6.234189e-49 | -8.615850e-47 |
| Msa0368450 | Msa0924980 | 0.828619 | 8.128834e-55 | -8.615850e-47 |
| Msa0380400 | Msa0924980 | 0.811766 | 5.940526e-51 | -8.615850e-47 |
| Msa0387630 | Msa0924980 | 0.800054 | 1.725587e-48 | -8.615850e-47 |
| Msa0389080 | Msa0924980 | 0.865581 | 5.323293e-65 | -8.615850e-47 |
| Msa0398600 | Msa0924980 | 0.891300 | 4.504964e-74 | -8.615850e-47 |
| Msa0401860 | Msa0924980 | 0.853938 | 1.716539e-61 | -8.615850e-47 |
| Msa0405460 | Msa0924980 | 0.875767 | 2.375979e-68 | -8.615850e-47 |
| Msa0405470 | Msa0924980 | 0.889348 | 2.624733e-73 | -8.615850e-47 |
| Msa0405550 | Msa0924980 | 0.882934 | 6.867716e-71 | -8.615850e-47 |
| Msa0432490 | Msa0924980 | 0.809047 | 2.294655e-50 | -8.615850e-47 |
| Msa0449910 | Msa0924980 | 0.973280 | 3.671390e-136 | -8.615850e-47 |
| Msa0461620 | Msa0924980 | 0.825576 | 4.347141e-54 | -8.615850e-47 |
| Msa0476890 | Msa0924980 | 0.832001 | 1.212433e-55 | -8.615850e-47 |
| Msa0261350 | Msa0924980 | 0.810441 | 1.150855e-50 | -8.615850e-47 |
| Msa0268210 | Msa0924980 | 0.801669 | 8.073292e-49 | -8.615850e-47 |
| Msa0268450 | Msa0924980 | 0.804644 | 1.956605e-49 | -8.615850e-47 |
| Msa0268660 | Msa0924980 | 0.813588 | 2.372900e-51 | -8.615850e-47 |
| Msa0268670 | Msa0924980 | 0.829710 | 4.420831e-55 | -8.615850e-47 |
| Msa0268880 | Msa0924980 | 0.806900 | 6.571937e-50 | -8.615850e-47 |
| Msa0269090 | Msa0924980 | 0.804770 | 1.842020e-49 | -8.615850e-47 |
| Msa0269160 | Msa0924980 | 0.801066 | 1.072782e-48 | -8.615850e-47 |
| Msa0269170 | Msa0924980 | 0.867911 | 9.647866e-66 | -8.615850e-47 |
| Msa0334450 | Msa0924980 | 0.802683 | 4.993018e-49 | -8.615850e-47 |
| Msa0340700 | Msa0924980 | 0.813269 | 2.787624e-51 | -8.615850e-47 |
| Msa0360790 | Msa0924980 | 0.813303 | 2.740323e-51 | -8.615850e-47 |
| Msa0483970 | Msa0924980 | 0.880157 | 6.914810e-70 | -8.615850e-47 |
| Msa0483980 | Msa0924980 | 0.834464 | 2.952014e-56 | -8.615850e-47 |
| Msa0493180 | Msa0924980 | 0.969470 | 3.604159e-130 | -8.615850e-47 |
| Msa0507960 | Msa0924980 | 0.815661 | 8.245837e-52 | -8.615850e-47 |
| Msa0521260 | Msa0924980 | 0.810819 | 9.533951e-51 | -8.615850e-47 |
| Msa0550980 | Msa0924980 | 0.803450 | 3.465337e-49 | -8.615850e-47 |
| Msa0550990 | Msa0924980 | 0.812082 | 5.069509e-51 | -8.615850e-47 |
| Msa0558780 | Msa0924980 | 0.803872 | 2.833492e-49 | -8.615850e-47 |
| Msa0576020 | Msa0924980 | 0.803797 | 2.936907e-49 | -8.615850e-47 |
| Msa0591250 | Msa0924980 | 0.845254 | 4.555873e-59 | -8.615850e-47 |
| Msa0591340 | Msa0924980 | 0.863709 | 2.051822e-64 | -8.615850e-47 |
| Msa0592330 | Msa0924980 | -0.803519 | 3.354131e-49 | -8.615850e-47 |
| Msa0864820 | Msa0924980 | 0.803897 | 2.799566e-49 | -8.615850e-47 |
| Msa0867660 | Msa0924980 | 0.865512 | 5.598610e-65 | -8.615850e-47 |
| Msa0867670 | Msa0924980 | 0.802433 | 5.623965e-49 | -8.615850e-47 |
| Msa0869420 | Msa0924980 | 0.833908 | 4.070364e-56 | -8.615850e-47 |
| Msa0881530 | Msa0924980 | 0.816615 | 5.047404e-52 | -8.615850e-47 |
| Msa0908250 | Msa0924980 | 0.803667 | 3.124785e-49 | -8.615850e-47 |
| Msa0908260 | Msa0924980 | 0.868988 | 4.336120e-66 | -8.615850e-47 |
| Msa0908270 | Msa0924980 | 0.851150 | 1.070528e-60 | -8.615850e-47 |
| Msa0908280 | Msa0924980 | 0.844867 | 5.794422e-59 | -8.615850e-47 |
| Msa0908290 | Msa0924980 | 0.802512 | 5.416139e-49 | -8.615850e-47 |
| Msa0908350 | Msa0924980 | 0.838978 | 2.085113e-57 | -8.615850e-47 |
| Msa0908360 | Msa0924980 | 0.820193 | 7.805112e-53 | -8.615850e-47 |
| Msa0908460 | Msa0924980 | 0.807945 | 3.943485e-50 | -8.615850e-47 |
| Msa0908470 | Msa0924980 | 0.869888 | 2.209561e-66 | -8.615850e-47 |
| Msa0908490 | Msa0924980 | 0.818354 | 2.047515e-52 | -8.615850e-47 |
| Msa0908500 | Msa0924980 | 0.842291 | 2.829155e-58 | -8.615850e-47 |
| Msa0908510 | Msa0924980 | 0.865479 | 5.730592e-65 | -8.615850e-47 |
| Msa0908520 | Msa0924980 | 0.823570 | 1.289712e-53 | -8.615850e-47 |
| Msa0908630 | Msa0924980 | 0.879207 | 1.504348e-69 | -8.615850e-47 |
| Msa0908690 | Msa0924980 | 0.869010 | 4.265362e-66 | -8.615850e-47 |
| Msa0908700 | Msa0924980 | 0.865921 | 4.157955e-65 | -8.615850e-47 |
| Msa0908710 | Msa0924980 | 0.807189 | 5.708980e-50 | -8.615850e-47 |
| Msa0911180 | Msa0924980 | 0.834156 | 3.528012e-56 | -8.615850e-47 |
| Msa0911220 | Msa0924980 | 0.839622 | 1.418945e-57 | -8.615850e-47 |
| Msa0924840 | Msa0924980 | 0.904666 | 9.667548e-80 | -8.615850e-47 |
| Msa0924900 | Msa0924980 | 0.864420 | 1.231631e-64 | -8.615850e-47 |
| Msa0924910 | Msa0924980 | 0.801455 | 8.932807e-49 | -8.615850e-47 |
| Msa0924980 | Msa0925030 | 0.981185 | 5.610368e-152 | -8.615850e-47 |
| Msa0924980 | Msa0931000 | 0.970644 | 6.245600e-132 | -8.615850e-47 |
| Msa0924980 | Msa0945520 | 0.807547 | 4.792414e-50 | -8.615850e-47 |
| Msa0924980 | Msa0963720 | 0.805151 | 1.532796e-49 | -8.615850e-47 |
| Msa0924980 | Msa0971690 | 0.828509 | 8.642289e-55 | -8.615850e-47 |
| Msa0924980 | Msa0982090 | 0.844321 | 8.128257e-59 | -8.615850e-47 |
| Msa0924980 | Msa0983600 | 0.867945 | 9.408131e-66 | -8.615850e-47 |
| Msa0924980 | Msa0983610 | 0.864139 | 1.507695e-64 | -8.615850e-47 |
| Msa0924980 | Msa0983620 | 0.809583 | 1.761433e-50 | -8.615850e-47 |
| Msa0924980 | Msa1086490 | 0.821291 | 4.364435e-53 | -8.615850e-47 |
| Msa0924980 | Msa1086670 | 0.828778 | 7.439756e-55 | -8.615850e-47 |
| Msa0924980 | Msa1086760 | 0.864026 | 1.634673e-64 | -8.615850e-47 |
| Msa0924980 | Msa1086770 | 0.860146 | 2.530924e-63 | -8.615850e-47 |
| Msa0924980 | Msa1086940 | 0.865178 | 7.130400e-65 | -8.615850e-47 |
| Msa0924980 | Msa1087070 | 0.869660 | 2.622311e-66 | -8.615850e-47 |
| Msa0924980 | Msa1087080 | 0.857283 | 1.813384e-62 | -8.615850e-47 |
| Msa0924980 | Msa1087090 | 0.865345 | 6.318766e-65 | -8.615850e-47 |
| Msa0924980 | Msa1087100 | 0.805912 | 1.061483e-49 | -8.615850e-47 |
| Msa0924980 | Msa1091710 | 0.941784 | 2.274230e-101 | -8.615850e-47 |
| Msa0924980 | Msa1121720 | 0.800812 | 1.208810e-48 | -8.615850e-47 |
| Msa0924980 | Msa1181370 | 0.840209 | 9.981382e-58 | -8.615850e-47 |
| Msa0924980 | Msa1236190 | 0.806228 | 9.108542e-50 | -8.615850e-47 |
| Msa0924980 | Msa1260640 | 0.805913 | 1.061160e-49 | -8.615850e-47 |
| Msa0924980 | Msa1273620 | 0.865774 | 4.625693e-65 | -8.615850e-47 |
| Msa0924980 | Msa1279250 | 0.801088 | 1.061708e-48 | -8.615850e-47 |
| Msa0924980 | Msa1305970 | 0.835454 | 1.662834e-56 | -8.615850e-47 |
| Msa0924980 | Msa1311600 | 0.839109 | 1.928782e-57 | -8.615850e-47 |
| Msa0924980 | Msa1354360 | 0.860727 | 1.688537e-63 | -8.615850e-47 |
| Msa0924980 | Msa1354370 | 0.852428 | 4.646342e-61 | -8.615850e-47 |
| Msa0924980 | Msa1354400 | 0.866708 | 2.339995e-65 | -8.615850e-47 |
| Msa0924980 | Msa1354510 | 0.810809 | 9.583665e-51 | -8.615850e-47 |
| Msa0924980 | Msa1354520 | 0.862962 | 3.494942e-64 | -8.615850e-47 |
| Msa0924980 | Msa1354530 | 0.864742 | 9.768541e-65 | -8.615850e-47 |
| Msa0924980 | Msa1354540 | 0.800749 | 1.245489e-48 | -8.615850e-47 |
| Msa0924980 | Msa1354650 | 0.865481 | 5.722744e-65 | -8.615850e-47 |
| Msa0924980 | Msa1354660 | 0.866849 | 2.110117e-65 | -8.615850e-47 |
| Msa0924980 | Msa1354780 | 0.865654 | 5.046704e-65 | -8.615850e-47 |
| Msa0924980 | Msa1354790 | 0.867978 | 9.187127e-66 | -8.615850e-47 |
| Msa0924980 | Msa1354800 | 0.802194 | 6.297757e-49 | -8.615850e-47 |
| Msa0924980 | Msa1354960 | 0.865644 | 5.083776e-65 | -8.615850e-47 |
| Msa0924980 | Msa1354970 | 0.811129 | 8.170444e-51 | -8.615850e-47 |
| Msa0924980 | Msa1365880 | 0.804419 | 2.179971e-49 | -8.615850e-47 |
| Msa0924980 | Msa1365980 | 0.807735 | 4.372535e-50 | -8.615850e-47 |
| Msa0924980 | Msa1365990 | 0.867602 | 1.212426e-65 | -8.615850e-47 |
| Msa0924980 | Msa1366020 | 0.865786 | 4.586312e-65 | -8.615850e-47 |
| Msa0924980 | Msa1366030 | 0.863325 | 2.698244e-64 | -8.615850e-47 |
| Msa0924980 | Msa1366060 | 0.864280 | 1.362459e-64 | -8.615850e-47 |
| Msa0924980 | Msa1366070 | 0.807225 | 5.608177e-50 | -8.615850e-47 |
| Msa0924980 | Msa1368250 | 0.805882 | 1.076799e-49 | -8.615850e-47 |
| Msa0924980 | Msa1368260 | 0.867711 | 1.118724e-65 | -8.615850e-47 |
| Msa0924980 | Msa1380180 | 0.808190 | 3.498446e-50 | -8.615850e-47 |
| Msa0924980 | Msa1382380 | 0.846016 | 2.829728e-59 | -8.615850e-47 |
| Msa0924980 | Msa1385360 | 0.868668 | 5.501259e-66 | -8.615850e-47 |
| Msa0924980 | Msa1385390 | 0.866527 | 2.671029e-65 | -8.615850e-47 |
| Msa0924980 | Msa1385400 | 0.803848 | 2.865266e-49 | -8.615850e-47 |
| Msa0924980 | Msa1389670 | 0.813056 | 3.104153e-51 | -8.615850e-47 |
| Msa0924980 | Msa1391120 | 0.810786 | 9.695560e-51 | -8.615850e-47 |
| Msa0924980 | Msa1391130 | 0.869046 | 4.150612e-66 | -8.615850e-47 |
| Msa0924980 | Msa1391140 | 0.864025 | 1.636150e-64 | -8.615850e-47 |
| Msa0924980 | Msa1391150 | 0.803207 | 3.891251e-49 | -8.615850e-47 |
| Msa0924980 | Msa1391250 | 0.806756 | 7.048138e-50 | -8.615850e-47 |
| Msa0924980 | Msa1391260 | 0.863803 | 1.917733e-64 | -8.615850e-47 |
| Msa0924980 | Msa1410480 | 0.814799 | 1.281732e-51 | -8.615850e-47 |
| Msa0924980 | Msa1410500 | 0.800854 | 1.185419e-48 | -8.615850e-47 |
| Msa0924980 | Msa1421520 | 0.804433 | 2.164853e-49 | -8.615850e-47 |
| Msa0924980 | Msa1440140 | 0.821063 | 4.927971e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924980 | MtrunA17_CPg0492821 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 6.38e-34 | 112 |
| Msa0924980 | MtrunA17_Chr4g0016851 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 6.38e-34 | 112 |
| Msa0924980 | MtrunA17_Chr4g0015751 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 6.38e-34 | 112 |
| Msa0924980 | MtrunA17_Chr4g0017011 | 98.148 | 54 | 1 | 0 | 1 | 54 | 1 | 54 | 2.07e-33 | 111 |
| Msa0924980 | MtrunA17_Chr5g0423051 | 96.296 | 54 | 2 | 0 | 1 | 54 | 1 | 54 | 3.52e-32 | 107 |
| Msa0924980 | MtrunA17_Chr4g0016841 | 61.538 | 91 | 21 | 2 | 14 | 104 | 9 | 85 | 4.52e-31 | 105 |
| Msa0924980 | MtrunA17_Chr6g0451331 | 90.323 | 31 | 3 | 0 | 24 | 54 | 41 | 71 | 5.28e-14 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924980 | ATCG00580.1 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 1.19e-34 | 114 |
| Msa0924980 | ATCG00560.1 | 97.297 | 37 | 1 | 0 | 68 | 104 | 2 | 38 | 3.75e-19 | 73.9 |
Find 25 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTAGCTTACGATGTATT+TGG | 0.244623 | 6_2:+67534977 | Msa0924980:CDS |
| GTAGCTCTATAATTCGGATT+AGG | 0.338134 | 6_2:-67535239 | None:intergenic |
| ATAACCAACCCGCAATGAAT+AGG | 0.348030 | 6_2:-67534943 | None:intergenic |
| TTATTACCAGTATTCGATAC+TGG | 0.348418 | 6_2:+67534894 | Msa0924980:CDS |
| TATGTGGAGCTCGGCATGTC+TGG | 0.349487 | 6_2:+67534842 | Msa0924980:exon |
| ATACCCTCCCTATTCATTGC+GGG | 0.391873 | 6_2:+67534935 | Msa0924980:CDS |
| TAACCAACCCGCAATGAATA+GGG | 0.406851 | 6_2:-67534942 | None:intergenic |
| TGAATCGTACCAGTCTCTAC+TGG | 0.410190 | 6_2:+67535297 | Msa0924980:CDS |
| CTTTCTGTAAAATACTCGTT+TGG | 0.412027 | 6_2:-67535010 | None:intergenic |
| TGTGTCGTAGCTCTATAATT+CGG | 0.415726 | 6_2:-67535245 | None:intergenic |
| AATAATCCAGTATCGAATAC+TGG | 0.423687 | 6_2:-67534900 | None:intergenic |
| CTCGGCATGTCTGGAAGCAC+AGG | 0.508926 | 6_2:+67534851 | Msa0924980:exon |
| ATTCGGATTAGGTTTATCGT+TGG | 0.512045 | 6_2:-67535228 | None:intergenic |
| GAATCGTACCAGTCTCTACT+GGG | 0.515213 | 6_2:+67535298 | Msa0924980:CDS |
| TTTGACTGTATAAGAATATG+TGG | 0.517465 | 6_2:+67534826 | None:intergenic |
| GGTTGGTTATTTGTCAGCAC+GGG | 0.523918 | 6_2:+67534956 | Msa0924980:CDS |
| GGGTTGGTTATTTGTCAGCA+CGG | 0.532372 | 6_2:+67534955 | Msa0924980:CDS |
| CCTCCCTATTCATTGCGGGT+TGG | 0.536548 | 6_2:+67534939 | Msa0924980:CDS |
| GTAAAATACTCGTTTGGACG+AGG | 0.550593 | 6_2:-67535004 | None:intergenic |
| TAATAAACCCCAGTAGAGAC+TGG | 0.572062 | 6_2:-67535306 | None:intergenic |
| GTATAAGAATATGTGGAGCT+CGG | 0.584815 | 6_2:+67534833 | None:intergenic |
| TATACCCTCCCTATTCATTG+CGG | 0.586067 | 6_2:+67534934 | Msa0924980:CDS |
| CAACCCGCAATGAATAGGGA+GGG | 0.665638 | 6_2:-67534938 | None:intergenic |
| CCAACCCGCAATGAATAGGG+AGG | 0.678708 | 6_2:-67534939 | None:intergenic |
| AATCGTACCAGTCTCTACTG+GGG | 0.711157 | 6_2:+67535299 | Msa0924980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTTAGTAGATCTTTTT+AGG | + | chr6_2:67535087-67535106 | Msa0924980:intron | 20.0% |
| !!! | ATTCAACATTTTGTTCATTT+GGG | - | chr6_2:67535277-67535296 | None:intergenic | 20.0% |
| !!! | AATTCAACATTTTGTTCATT+TGG | - | chr6_2:67535278-67535297 | None:intergenic | 20.0% |
| ! | TTATTAATGGAATTCCTTGT+CGG | - | chr6_2:67535036-67535055 | None:intergenic | 25.0% |
| !!! | ATTTAGTAGATCTTTTTAGG+AGG | + | chr6_2:67535090-67535109 | Msa0924980:intron | 25.0% |
| ! | TATTGATCCCAAAAAAAAGA+CGG | - | chr6_2:67535191-67535210 | None:intergenic | 25.0% |
| TTATTACCAGTATTCGATAC+TGG | + | chr6_2:67534894-67534913 | Msa0924980:CDS | 30.0% | |
| ! | AATAATCCAGTATCGAATAC+TGG | - | chr6_2:67534903-67534922 | None:intergenic | 30.0% |
| CTTTCTGTAAAATACTCGTT+TGG | - | chr6_2:67535013-67535032 | None:intergenic | 30.0% | |
| CAAGGAATTCCATTAATAAC+TGG | + | chr6_2:67535037-67535056 | Msa0924980:intron | 30.0% | |
| GTTGTTCCAAAGAATCAAAA+CGG | - | chr6_2:67535063-67535082 | None:intergenic | 30.0% | |
| AACCATCGTACTGTAAAAAT+GGG | - | chr6_2:67535142-67535161 | None:intergenic | 30.0% | |
| ! | GGTTTAGCTTACGATGTATT+TGG | + | chr6_2:67534977-67534996 | Msa0924980:CDS | 35.0% |
| ! | TATTTTACAGAAAGCCGACA+AGG | + | chr6_2:67535019-67535038 | Msa0924980:intron | 35.0% |
| TCAAAACGGCCAGTTATTAA+TGG | - | chr6_2:67535049-67535068 | None:intergenic | 35.0% | |
| TCGTACTGTAAAAATGGGAT+AGG | - | chr6_2:67535137-67535156 | None:intergenic | 35.0% | |
| !! | ATCCCATTTTTACAGTACGA+TGG | + | chr6_2:67535137-67535156 | Msa0924980:intron | 35.0% |
| CAACCATCGTACTGTAAAAA+TGG | - | chr6_2:67535143-67535162 | None:intergenic | 35.0% | |
| ! | CATTTTTACAGTACGATGGT+TGG | + | chr6_2:67535141-67535160 | Msa0924980:intron | 35.0% |
| ! | ATTCGGATTAGGTTTATCGT+TGG | - | chr6_2:67535231-67535250 | None:intergenic | 35.0% |
| ! | GTAGCTCTATAATTCGGATT+AGG | - | chr6_2:67535242-67535261 | None:intergenic | 35.0% |
| ! | TGTGTCGTAGCTCTATAATT+CGG | - | chr6_2:67535248-67535267 | None:intergenic | 35.0% |
| TATACCCTCCCTATTCATTG+CGG | + | chr6_2:67534934-67534953 | Msa0924980:CDS | 40.0% | |
| TAACCAACCCGCAATGAATA+GGG | - | chr6_2:67534945-67534964 | None:intergenic | 40.0% | |
| ATAACCAACCCGCAATGAAT+AGG | - | chr6_2:67534946-67534965 | None:intergenic | 40.0% | |
| GTAAAATACTCGTTTGGACG+AGG | - | chr6_2:67535007-67535026 | None:intergenic | 40.0% | |
| !!! | AACTGGCCGTTTTGATTCTT+TGG | + | chr6_2:67535054-67535073 | Msa0924980:intron | 40.0% |
| TAGGTCCTATCTATGGTCAT+TGG | - | chr6_2:67535118-67535137 | None:intergenic | 40.0% | |
| AATGGGATAGGTCCTATCTA+TGG | - | chr6_2:67535125-67535144 | None:intergenic | 40.0% | |
| !!! | GTACCCACCGTCTTTTTTTT+GGG | + | chr6_2:67535181-67535200 | Msa0924980:intron | 40.0% |
| GATCCCAAAAAAAAGACGGT+GGG | - | chr6_2:67535187-67535206 | None:intergenic | 40.0% | |
| TGATCCCAAAAAAAAGACGG+TGG | - | chr6_2:67535188-67535207 | None:intergenic | 40.0% | |
| TAATAAACCCCAGTAGAGAC+TGG | - | chr6_2:67535309-67535328 | None:intergenic | 40.0% | |
| ATACCCTCCCTATTCATTGC+GGG | + | chr6_2:67534935-67534954 | Msa0924980:CDS | 45.0% | |
| !! | GGGTTGGTTATTTGTCAGCA+CGG | + | chr6_2:67534955-67534974 | Msa0924980:CDS | 45.0% |
| ! | GGTTGGTTATTTGTCAGCAC+GGG | + | chr6_2:67534956-67534975 | Msa0924980:CDS | 45.0% |
| AGGCTCCAATGACCATAGAT+AGG | + | chr6_2:67535110-67535129 | Msa0924980:intron | 45.0% | |
| !!! | GGTACCCACCGTCTTTTTTT+TGG | + | chr6_2:67535180-67535199 | Msa0924980:intron | 45.0% |
| TGAATCGTACCAGTCTCTAC+TGG | + | chr6_2:67535297-67535316 | Msa0924980:CDS | 45.0% | |
| GAATCGTACCAGTCTCTACT+GGG | + | chr6_2:67535298-67535317 | Msa0924980:CDS | 45.0% | |
| AATCGTACCAGTCTCTACTG+GGG | + | chr6_2:67535299-67535318 | Msa0924980:CDS | 45.0% | |
| CAACCCGCAATGAATAGGGA+GGG | - | chr6_2:67534941-67534960 | None:intergenic | 50.0% | |
| ! | GTACGATGGTTGGCTGTTCA+CGG | + | chr6_2:67535151-67535170 | Msa0924980:intron | 50.0% |
| TATGTGGAGCTCGGCATGTC+TGG | + | chr6_2:67534842-67534861 | Msa0924980:exon | 55.0% | |
| CCAACCCGCAATGAATAGGG+AGG | - | chr6_2:67534942-67534961 | None:intergenic | 55.0% | |
| CCTCCCTATTCATTGCGGGT+TGG | + | chr6_2:67534939-67534958 | Msa0924980:CDS | 55.0% | |
| !! | GTTGGCTGTTCACGGACTAG+CGG | + | chr6_2:67535159-67535178 | Msa0924980:intron | 55.0% |
| ! | CTCGGCATGTCTGGAAGCAC+AGG | + | chr6_2:67534851-67534870 | Msa0924980:exon | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 67534840 | 67535373 | 67534840 | ID=Msa0924980;Name=Msa0924980 |
| chr6_2 | mRNA | 67534840 | 67535373 | 67534840 | ID=Msa0924980-mRNA-1;Parent=Msa0924980;Name=Msa0924980-mRNA-1;_AED=0.22;_eAED=0.22;_QI=17|0|0|1|0|0|2|0|104 |
| chr6_2 | exon | 67534840 | 67535017 | 67534840 | ID=Msa0924980-mRNA-1:exon:10704;Parent=Msa0924980-mRNA-1 |
| chr6_2 | exon | 67535223 | 67535373 | 67535223 | ID=Msa0924980-mRNA-1:exon:10705;Parent=Msa0924980-mRNA-1 |
| chr6_2 | five_prime_UTR | 67534840 | 67534856 | 67534840 | ID=Msa0924980-mRNA-1:five_prime_utr;Parent=Msa0924980-mRNA-1 |
| chr6_2 | CDS | 67534857 | 67535017 | 67534857 | ID=Msa0924980-mRNA-1:cds;Parent=Msa0924980-mRNA-1 |
| chr6_2 | CDS | 67535223 | 67535373 | 67535223 | ID=Msa0924980-mRNA-1:cds;Parent=Msa0924980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
