AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0507960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507960 MtrunA17_Chr3g0112121 98.169 437 7 1 1 437 1 436 0.0 887
Msa0507960 MtrunA17_Chr5g0435631 89.269 438 44 3 1 437 1 436 0.0 812
Msa0507960 MtrunA17_Chr4g0009431 82.877 438 73 2 1 437 1 437 0.0 754
Msa0507960 MtrunA17_Chr2g0334101 45.721 409 198 13 25 420 17 414 6.34e-111 333
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507960 AT2G39730.2 80.137 438 83 2 1 437 1 435 0.0 730
Msa0507960 AT2G39730.3 80.137 438 83 2 1 437 1 435 0.0 729
Msa0507960 AT2G39730.1 80.137 438 83 2 1 437 1 435 0.0 728
Msa0507960 AT1G73110.2 54.636 302 130 6 125 420 31 331 3.20e-114 338
Msa0507960 AT1G73110.1 54.636 302 130 6 125 420 128 428 1.24e-112 338

Find 135 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACATGTTCATCATATAAT+TGG 0.129837 3_4:+55648314 None:intergenic
GTACAATGTTTAATTAAATT+TGG 0.183260 3_4:-55648431 Msa0507960:three_prime_UTR
GAAGTGAGGAAGTGGGTTTC+TGG 0.222183 3_4:-55648970 Msa0507960:CDS
CCAATTGGCAGACAAGTATT+TGG 0.242423 3_4:-55648806 Msa0507960:CDS
TGATAGGTTCCTCTCATTCT+TGG 0.246953 3_4:-55650292 Msa0507960:intron
TTCCTCTCATTCTTGGAGTC+TGG 0.255291 3_4:-55650285 Msa0507960:CDS
AACATTCTCAATGTGTTATT+AGG 0.258499 3_4:-55648535 Msa0507960:three_prime_UTR
TTCCTCTTGTGATGTCTTGT+TGG 0.298884 3_4:+55650695 None:intergenic
TCCTCTCATTCTTGGAGTCT+GGG 0.312740 3_4:-55650284 Msa0507960:CDS
TCATCATATAATTGGGATAA+TGG 0.322524 3_4:+55648322 None:intergenic
TCTAGTTTCTCCAATGATCT+TGG 0.338522 3_4:-55648732 Msa0507960:exon
TGCTAATCAAGATGCTATTA+AGG 0.353818 3_4:-55648764 Msa0507960:CDS
TCTCCAGCACTCATCATGAT+AGG 0.354239 3_4:+55649565 None:intergenic
AACTCACTTGATTCCCATCT+TGG 0.355485 3_4:+55650216 None:intergenic
GTGAAGCCTCTGACATTATC+AGG 0.368067 3_4:-55649489 Msa0507960:CDS
GGAGTTGGTATTGAAACAAT+TGG 0.369327 3_4:-55648949 Msa0507960:CDS
CTAGAAAAGTTGTTGGAGTA+TGG 0.369600 3_4:-55648868 Msa0507960:CDS
GCTGCTTCAGTTTCAACTGT+TGG 0.393971 3_4:-55651805 Msa0507960:CDS
ATCTTTGGCTGCTCAAACAC+TGG 0.394520 3_4:+55648895 None:intergenic
AAGATTGTTGACACCTTCCC+TGG 0.404593 3_4:-55649127 Msa0507960:CDS
CGGAGACAGATGGAGGGGTT+TGG 0.414870 3_4:-55650737 Msa0507960:CDS
GTACAACTTTGACAACACTA+TGG 0.415644 3_4:-55650487 Msa0507960:CDS
CACATGTTCATCATATAATT+GGG 0.419749 3_4:+55648315 None:intergenic
ATTATTATTGCAGATTTCTT+CGG 0.420483 3_4:-55649021 Msa0507960:intron
AGGAAGTGGGTTTCTGGAGT+TGG 0.432162 3_4:-55648964 Msa0507960:CDS
CCAAATACTTGTCTGCCAAT+TGG 0.435805 3_4:+55648806 None:intergenic
CCAATACGGTCTTCTCTAGT+AGG 0.437673 3_4:+55649202 None:intergenic
GTTTCTAATTCAGCTTTCTT+CGG 0.438269 3_4:-55650865 Msa0507960:CDS
TGAGTGTGGCATTCACCATC+TGG 0.438378 3_4:+55649380 None:intergenic
GAATGTGAAGAGAGTCCAAT+TGG 0.441295 3_4:-55648821 Msa0507960:CDS
GATGACACTAGAAAAGTTGT+TGG 0.447693 3_4:-55648875 Msa0507960:CDS
TAATAAAATTATCTCAAACT+TGG 0.449697 3_4:+55648497 None:intergenic
TTCCAGCATCTTGTGGTGCT+TGG 0.450580 3_4:+55650650 None:intergenic
AAGTGTTGAGAAATCGTTAC+CGG 0.452222 3_4:+55649273 None:intergenic
AATTTACATACCTTGATGTT+GGG 0.454354 3_4:+55650393 None:intergenic
GGGTAGGGTCAAGAAATTCT+TGG 0.455278 3_4:+55650413 None:intergenic
TTACAAACCTCCAAGATCAT+TGG 0.458612 3_4:+55648722 None:intergenic
GTCGTATGGAGAAGTTCTAC+TGG 0.461112 3_4:-55649228 Msa0507960:CDS
TCTTCCTTGTTGTACATACC+AGG 0.462463 3_4:+55649322 None:intergenic
AAATTTACATACCTTGATGT+TGG 0.464290 3_4:+55650392 None:intergenic
AACTTTGACAACACTATGGA+TGG 0.466779 3_4:-55650483 Msa0507960:CDS
CCAGGGAGTTGGACATTGGT+GGG 0.468336 3_4:+55649340 None:intergenic
TTCATCAACGATCTCGATGC+AGG 0.468728 3_4:-55649445 Msa0507960:CDS
TGAGCTTGTCTTTGCCAAGA+TGG 0.475008 3_4:-55650230 Msa0507960:CDS
TATAATAGGTAGAAAGAGAA+AGG 0.475009 3_4:+55648406 None:intergenic
AGTAGTTGCATCGAAGTTTG+AGG 0.476019 3_4:+55648583 None:intergenic
ATCGTTACCGGTGACAATGA+TGG 0.477733 3_4:+55649285 None:intergenic
TCTTATGAGTACATTAGTAC+TGG 0.483378 3_4:-55650607 Msa0507960:CDS
TTCCAAGCACCACAAGATGC+TGG 0.484718 3_4:-55650652 Msa0507960:CDS
GACCGTATTGGTGTCTGCAT+TGG 0.485554 3_4:-55649190 Msa0507960:CDS
CAGATTTCTTCGGTGCATTG+AGG 0.486126 3_4:-55649011 Msa0507960:CDS
CATCACAAGAGGAAAGGGTT+TGG 0.488621 3_4:-55650686 Msa0507960:CDS
AGTTTCTCCAATGATCTTGG+AGG 0.492672 3_4:-55648729 Msa0507960:intron
CGATGCAGGAGCAGGTCGTA+TGG 0.496017 3_4:-55649431 Msa0507960:CDS
TGATAATGTCAGAGGCTTCA+CGG 0.497210 3_4:+55649491 None:intergenic
AGATTTCTTCGGTGCATTGA+GGG 0.497710 3_4:-55649010 Msa0507960:CDS
AACGATCTCGATGCAGGAGC+AGG 0.497933 3_4:-55649439 Msa0507960:CDS
TTGGTCATCTGAAATATCAT+AGG 0.498519 3_4:+55650714 None:intergenic
AGCCCTATCATGATGAGTGC+TGG 0.507079 3_4:-55649568 Msa0507960:CDS
GAGCTTGAAAGTGGAAATGC+AGG 0.508166 3_4:-55649544 Msa0507960:CDS
GAGCTTGTCTTTGCCAAGAT+GGG 0.509304 3_4:-55650229 Msa0507960:CDS
TCGTTACCGGTGACAATGAT+GGG 0.516193 3_4:+55649286 None:intergenic
TCTCATCCGTGATGGTCGTA+TGG 0.520006 3_4:-55649242 Msa0507960:CDS
TCCCTTCCTGATAATGTCAG+AGG 0.521414 3_4:+55649483 None:intergenic
AGATAGGTATACCGATGGAT+TGG 0.522987 3_4:+55649104 None:intergenic
CAAGACATCACAAGAGGAAA+GGG 0.523453 3_4:-55650691 Msa0507960:CDS
ACATACCTTGATGTTGGGTA+GGG 0.523802 3_4:+55650398 None:intergenic
CCAAACACAAAAGTTTCCTC+AGG 0.524555 3_4:-55650811 Msa0507960:CDS
TGGCAAAGACAAGCTCAGCT+TGG 0.525244 3_4:+55650236 None:intergenic
ACCAATCAGTGCAGTATCCA+TGG 0.525296 3_4:-55651827 Msa0507960:exon
TACATACCTTGATGTTGGGT+AGG 0.527306 3_4:+55650397 None:intergenic
TATTTGGAAGGTGCTGCTCT+TGG 0.530394 3_4:-55648790 Msa0507960:CDS
TTGAATGGCTCAGTAGTAGC+TGG 0.536636 3_4:-55650895 Msa0507960:CDS
ATTCTCAATGTGTTATTAGG+TGG 0.537623 3_4:-55648532 Msa0507960:three_prime_UTR
CCTCTCATTCTTGGAGTCTG+GGG 0.539615 3_4:-55650283 Msa0507960:CDS
ACCAGGGAGTTGGACATTGG+TGG 0.539763 3_4:+55649339 None:intergenic
CTCCAGCACTCATCATGATA+GGG 0.540258 3_4:+55649566 None:intergenic
CTTGGAGTCTGGGGAGGCAA+AGG 0.540709 3_4:-55650274 Msa0507960:CDS
CTCATTCTTGGAGTCTGGGG+AGG 0.540987 3_4:-55650280 Msa0507960:CDS
ACGTTGCAGATGAGCTTGAA+TGG 0.542906 3_4:-55650910 Msa0507960:intron
GGTATACCGATGGATTGGCC+AGG 0.543252 3_4:+55649109 None:intergenic
ACCTTCCCTGGCCAATCCAT+CGG 0.545441 3_4:-55649115 Msa0507960:intron
ACCCCTCCATCTGTCTCCGT+CGG 0.548680 3_4:+55650741 None:intergenic
CTTGACCCTACCCAACATCA+AGG 0.551721 3_4:-55650403 Msa0507960:intron
GTCTGGGGAGGCAAAGGACA+AGG 0.552637 3_4:-55650268 Msa0507960:CDS
CCTACTAGAGAAGACCGTAT+TGG 0.553146 3_4:-55649202 Msa0507960:CDS
TGGTGTTGCACAAAAGAGAA+AGG 0.554304 3_4:+55651846 None:intergenic
AGTTGAAACTGAAGCAGCCA+TGG 0.554794 3_4:+55651810 None:intergenic
TGTTGTACATACCAGGGAGT+TGG 0.556562 3_4:+55649329 None:intergenic
TCAATGTGTTATTAGGTGGA+AGG 0.557881 3_4:-55648528 Msa0507960:three_prime_UTR
CTTCCTTGTTGTACATACCA+GGG 0.559055 3_4:+55649323 None:intergenic
AAAGCTGAATTAGAAACTGT+TGG 0.560874 3_4:+55650871 None:intergenic
GCCATGGATACTGCACTGAT+TGG 0.562692 3_4:+55651826 None:intergenic
ACCGATGGATTGGCCAGGGA+AGG 0.562925 3_4:+55649114 None:intergenic
TTCCAATGCAGACACCAATA+CGG 0.566231 3_4:+55649188 None:intergenic
ACGATGATGAAGTGAGGAAG+TGG 0.566849 3_4:-55648978 Msa0507960:CDS
ACAAGCTTGTCCATAAAAGC+AGG 0.567155 3_4:+55650447 None:intergenic
CCCACCAATGTCCAACTCCC+TGG 0.567626 3_4:-55649340 Msa0507960:CDS
ACAAGACATCACAAGAGGAA+AGG 0.569311 3_4:-55650692 Msa0507960:CDS
GCCTCTGACATTATCAGGAA+GGG 0.569618 3_4:-55649484 Msa0507960:CDS
CATCTTTAGCGATATTGTCA+TGG 0.579614 3_4:+55649158 None:intergenic
GATGCAGGAGCAGGTCGTAT+GGG 0.579936 3_4:-55649430 Msa0507960:CDS
ATCAGCAATGTTCATGAGTG+TGG 0.586551 3_4:+55649366 None:intergenic
TTGGCAGACAAGTATTTGGA+AGG 0.590350 3_4:-55648802 Msa0507960:CDS
CATACCAGGGAGTTGGACAT+TGG 0.598285 3_4:+55649336 None:intergenic
GACCAACAAGACATCACAAG+AGG 0.598306 3_4:-55650697 Msa0507960:CDS
GCAGGAGCAGGTCGTATGGG+TGG 0.598399 3_4:-55649427 Msa0507960:CDS
AGCCTCTGACATTATCAGGA+AGG 0.599821 3_4:-55649485 Msa0507960:CDS
TATGCTCCTCTCATCCGTGA+TGG 0.599927 3_4:-55649250 Msa0507960:CDS
AGTGCTGGAGAGCTTGAAAG+TGG 0.600135 3_4:-55649553 Msa0507960:CDS
AACAGACCGACGGAGACAGA+TGG 0.601295 3_4:-55650747 Msa0507960:CDS
CCCCAGACTCCAAGAATGAG+AGG 0.602433 3_4:+55650283 None:intergenic
AATCAAGATGCTATTAAGGA+GGG 0.604002 3_4:-55648760 Msa0507960:CDS
GACCGACGGAGACAGATGGA+GGG 0.605937 3_4:-55650743 Msa0507960:CDS
TTTGGCTGCTCAAACACTGG+TGG 0.609469 3_4:+55648898 None:intergenic
TAATCAAGATGCTATTAAGG+AGG 0.611873 3_4:-55648761 Msa0507960:CDS
ACCGACGGAGACAGATGGAG+GGG 0.612461 3_4:-55650742 Msa0507960:CDS
AAAGAAGCTTGTGAACTCAA+AGG 0.613555 3_4:-55648926 Msa0507960:CDS
CGATGATGAAGTGAGGAAGT+GGG 0.616122 3_4:-55648977 Msa0507960:CDS
AGACCGACGGAGACAGATGG+AGG 0.622548 3_4:-55650744 Msa0507960:CDS
CGTGTGCCCATCATTGTCAC+CGG 0.623900 3_4:-55649292 Msa0507960:CDS
AAGCTTGTGAACTCAAAGGA+AGG 0.624377 3_4:-55648922 Msa0507960:CDS
GTATACCGATGGATTGGCCA+GGG 0.625385 3_4:+55649110 None:intergenic
TAATGAGTTCCAGCATCTTG+TGG 0.630506 3_4:+55650643 None:intergenic
GCAACTACTAGAAGTTGTGA+TGG 0.634634 3_4:-55648569 Msa0507960:three_prime_UTR
CAGGGAGTTGGACATTGGTG+GGG 0.635431 3_4:+55649341 None:intergenic
GAGTGTACGATGATGAAGTG+AGG 0.639625 3_4:-55648984 Msa0507960:CDS
TCGTATGGAGAAGTTCTACT+GGG 0.642236 3_4:-55649227 Msa0507960:CDS
ATACGACCATCACGGATGAG+AGG 0.646877 3_4:+55649244 None:intergenic
GTTGTTGACAGTGTATTGTG+TGG 0.660705 3_4:+55649402 None:intergenic
ACTTCTCCATACGACCATCA+CGG 0.660717 3_4:+55649236 None:intergenic
CTTTAGCGATATTGTCATGG+CGG 0.675976 3_4:+55649161 None:intergenic
ATACACTGTCAACAACCAGA+TGG 0.678952 3_4:-55649395 Msa0507960:CDS
GATGACAGTAAACAGACCGA+CGG 0.702756 3_4:-55650757 Msa0507960:CDS
ACTCCCTGGTATGTACAACA+AGG 0.721701 3_4:-55649326 Msa0507960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGTTAAAAGTGATATAT+AGG - chr3_4:55648941-55648960 Msa0507960:CDS 15.0%
!!! ACACATTTTATTAATATGTA+TGG - chr3_4:55649526-55649545 Msa0507960:CDS 15.0%
!!! ATTTTCATTTTTGTTTTGAT+AGG - chr3_4:55649779-55649798 Msa0507960:intron 15.0%
!! CATAATAGTAACATTAATTA+AGG + chr3_4:55651400-55651419 None:intergenic 15.0%
!! ATTAATGTTACTATTATGTT+TGG - chr3_4:55651402-55651421 Msa0507960:intron 15.0%
!! TAATAAAATTATCTCAAACT+TGG + chr3_4:55651593-55651612 None:intergenic 15.0%
!! GTACAATGTTTAATTAAATT+TGG - chr3_4:55651656-55651675 Msa0507960:intron 15.0%
!! AGAAAGAAAAAAAAAAACAA+GGG + chr3_4:55651709-55651728 None:intergenic 15.0%
!! AAGAAAGAAAAAAAAAAACA+AGG + chr3_4:55651710-55651729 None:intergenic 15.0%
!! AAAATTTAAGTCACATGATT+TGG + chr3_4:55648419-55648438 None:intergenic 20.0%
!! TCTAATATGGTATCTATAAA+TGG + chr3_4:55648576-55648595 None:intergenic 20.0%
!! TTTATAGATACCATATTAGA+AGG - chr3_4:55648576-55648595 Msa0507960:three_prime_UTR 20.0%
!! TTATAGATACCATATTAGAA+GGG - chr3_4:55648577-55648596 Msa0507960:three_prime_UTR 20.0%
!! ATAGATAAGTAAGTAAAAAG+AGG - chr3_4:55649100-55649119 Msa0507960:intron 20.0%
!! TAGATAAGTAAGTAAAAAGA+GGG - chr3_4:55649101-55649120 Msa0507960:intron 20.0%
!! TTTATACATGAAATCTCATA+AGG + chr3_4:55650013-55650032 None:intergenic 20.0%
!! ATAATAGCTCATAAATAAGA+CGG + chr3_4:55651051-55651070 None:intergenic 20.0%
!! ATTATTATTGCAGATTTCTT+CGG - chr3_4:55651066-55651085 Msa0507960:intron 20.0%
!!! TTTGGTTCAAATAAAAAACT+TGG - chr3_4:55651420-55651439 Msa0507960:intron 20.0%
!!! AAAAAACAAGGGTATATAAT+AGG + chr3_4:55651698-55651717 None:intergenic 20.0%
! AACAAATGAAAGTAACATAC+TGG + chr3_4:55648321-55648340 None:intergenic 25.0%
! TATATAGTTCACATTCACAT+AGG - chr3_4:55648369-55648388 Msa0507960:three_prime_UTR 25.0%
! TGATACTTAGCTGATATATA+GGG - chr3_4:55648488-55648507 Msa0507960:three_prime_UTR 25.0%
! CTTTACATGATTTCTGTATA+CGG + chr3_4:55648926-55648945 None:intergenic 25.0%
! TATAGGAGTAATAGATTTCA+AGG - chr3_4:55648958-55648977 Msa0507960:CDS 25.0%
! AATATCGTGTAAAAATCTAG+TGG + chr3_4:55649052-55649071 None:intergenic 25.0%
! AGATAAGTAAGTAAAAAGAG+GGG - chr3_4:55649102-55649121 Msa0507960:intron 25.0%
! AATTTACATACCTTGATGTT+GGG + chr3_4:55649697-55649716 None:intergenic 25.0%
! AAATTTACATACCTTGATGT+TGG + chr3_4:55649698-55649717 None:intergenic 25.0%
! TGTAGGATTTAAAAGTTATG+AGG + chr3_4:55649972-55649991 None:intergenic 25.0%
! TAAATTGTCTCTACTATCAT+AGG - chr3_4:55650029-55650048 Msa0507960:intron 25.0%
! AAATTGTCTCTACTATCATA+GGG - chr3_4:55650030-55650049 Msa0507960:intron 25.0%
! ACTTACGACTATAAACTATT+TGG - chr3_4:55650079-55650098 Msa0507960:intron 25.0%
! TTATCTATTGACATATACAC+TGG - chr3_4:55650207-55650226 Msa0507960:intron 25.0%
! ACATTAAATAGACACAAGTT+AGG + chr3_4:55650485-55650504 None:intergenic 25.0%
! AAACTTGGACTAAAAAATCT+TGG - chr3_4:55651435-55651454 Msa0507960:intron 25.0%
! AACTTGGACTAAAAAATCTT+GGG - chr3_4:55651436-55651455 Msa0507960:intron 25.0%
!! AACATTCTCAATGTGTTATT+AGG - chr3_4:55651552-55651571 Msa0507960:intron 25.0%
! TATAATAGGTAGAAAGAGAA+AGG + chr3_4:55651684-55651703 None:intergenic 25.0%
! TCATCATATAATTGGGATAA+TGG + chr3_4:55651768-55651787 None:intergenic 25.0%
! CACATGTTCATCATATAATT+GGG + chr3_4:55651775-55651794 None:intergenic 25.0%
! TCACATGTTCATCATATAAT+TGG + chr3_4:55651776-55651795 None:intergenic 25.0%
!!! TTTCTTTTCTCTTGTTTGAT+TGG - chr3_4:55651830-55651849 Msa0507960:exon 25.0%
ATATCAGCTAAGTATCACAT+AGG + chr3_4:55648485-55648504 None:intergenic 30.0%
GTGATACTTAGCTGATATAT+AGG - chr3_4:55648487-55648506 Msa0507960:three_prime_UTR 30.0%
AACTAATCACCCTTCTAATA+TGG + chr3_4:55648589-55648608 None:intergenic 30.0%
ATATTCAAGACCGTTTGAAT+CGG - chr3_4:55648653-55648672 Msa0507960:intron 30.0%
! CTTAAATAAGCCGATTCAAA+CGG + chr3_4:55648666-55648685 None:intergenic 30.0%
ATAAGCTCTCACAAATACTT+AGG + chr3_4:55648701-55648720 None:intergenic 30.0%
AGTAATAGATTTCAAGGAGT+TGG - chr3_4:55648964-55648983 Msa0507960:CDS 30.0%
GATAAGTAAGTAAAAAGAGG+GGG - chr3_4:55649103-55649122 Msa0507960:intron 30.0%
AAAGCTGAATTAGAAACTGT+TGG + chr3_4:55649219-55649238 None:intergenic 30.0%
GTTTCTAATTCAGCTTTCTT+CGG - chr3_4:55649222-55649241 Msa0507960:CDS 30.0%
! TTGGTCATCTGAAATATCAT+AGG + chr3_4:55649376-55649395 None:intergenic 30.0%
TCTTATGAGTACATTAGTAC+TGG - chr3_4:55649480-55649499 Msa0507960:CDS 30.0%
CTTGTTTAGTAATCACTTGT+AGG + chr3_4:55649989-55650008 None:intergenic 30.0%
AATTGTCTCTACTATCATAG+GGG - chr3_4:55650031-55650050 Msa0507960:intron 30.0%
ATATGTCCATAAGCTGTATT+CGG + chr3_4:55650124-55650143 None:intergenic 30.0%
ATACGTTCTTTCAACCATTA+CGG - chr3_4:55650158-55650177 Msa0507960:intron 30.0%
TAGCGTATAAAAGCAGTTTA+TGG - chr3_4:55650303-55650322 Msa0507960:intron 30.0%
ATGAAATGAGCACTTGAATT+AGG + chr3_4:55650425-55650444 None:intergenic 30.0%
GATAATGTAACATGCTTCTT+TGG + chr3_4:55650457-55650476 None:intergenic 30.0%
AGATAGACAGATAGATAGAT+AGG + chr3_4:55651002-55651021 None:intergenic 30.0%
!! AACTTTTCTAGTGTCATCTT+TGG + chr3_4:55651210-55651229 None:intergenic 30.0%
TGCTAATCAAGATGCTATTA+AGG - chr3_4:55651323-55651342 Msa0507960:intron 30.0%
TAATCAAGATGCTATTAAGG+AGG - chr3_4:55651326-55651345 Msa0507960:intron 30.0%
AATCAAGATGCTATTAAGGA+GGG - chr3_4:55651327-55651346 Msa0507960:intron 30.0%
! ATTCTCAATGTGTTATTAGG+TGG - chr3_4:55651555-55651574 Msa0507960:intron 30.0%
TTTCTGTATACGGATCTGTT+TGG + chr3_4:55648916-55648935 None:intergenic 35.0%
! TTTTGTGTTTGGAAGTCTTG+CGG + chr3_4:55649268-55649287 None:intergenic 35.0%
!! AAAAACTTTGAAGCTTCCTG+AGG + chr3_4:55649295-55649314 None:intergenic 35.0%
!!! CCATCATCACAAGTTTTAGA+TGG + chr3_4:55649572-55649591 None:intergenic 35.0%
! CCATCTAAAACTTGTGATGA+TGG - chr3_4:55649569-55649588 Msa0507960:CDS 35.0%
!!! ACTTGTGATGATGGTGTTTT+AGG - chr3_4:55649578-55649597 Msa0507960:intron 35.0%
GTACAACTTTGACAACACTA+TGG - chr3_4:55649600-55649619 Msa0507960:intron 35.0%
AACTTTGACAACACTATGGA+TGG - chr3_4:55649604-55649623 Msa0507960:intron 35.0%
!! TTACATTGCTCCTGCTTTTA+TGG - chr3_4:55649630-55649649 Msa0507960:intron 35.0%
TGCTATGACTTTAGCAGAAT+TGG - chr3_4:55649742-55649761 Msa0507960:intron 35.0%
GCTATGACTTTAGCAGAATT+GGG - chr3_4:55649743-55649762 Msa0507960:intron 35.0%
AATTAGCCGAATACAGCTTA+TGG - chr3_4:55650115-55650134 Msa0507960:intron 35.0%
TAATCGAAACATGTCCGTAA+TGG + chr3_4:55650175-55650194 None:intergenic 35.0%
ATACACTGGTGAGACTATTT+AGG - chr3_4:55650221-55650240 Msa0507960:intron 35.0%
!! ACTGCTTTTATACGCTATCT+TGG + chr3_4:55650300-55650319 None:intergenic 35.0%
CTGTAAGCTCTTGATAAACA+TGG - chr3_4:55650399-55650418 Msa0507960:intron 35.0%
!! AAGTGTTGAGAAATCGTTAC+CGG + chr3_4:55650817-55650836 None:intergenic 35.0%
CATCTTTAGCGATATTGTCA+TGG + chr3_4:55650932-55650951 None:intergenic 35.0%
TAGATAGATAGGTATACCGA+TGG + chr3_4:55650991-55651010 None:intergenic 35.0%
CTGTCTATCTGTTTGTTTGT+CGG - chr3_4:55651024-55651043 Msa0507960:intron 35.0%
!! GGAGTTGGTATTGAAACAAT+TGG - chr3_4:55651138-55651157 Msa0507960:intron 35.0%
AAAGAAGCTTGTGAACTCAA+AGG - chr3_4:55651161-55651180 Msa0507960:intron 35.0%
GATGACACTAGAAAAGTTGT+TGG - chr3_4:55651212-55651231 Msa0507960:intron 35.0%
CTAGAAAAGTTGTTGGAGTA+TGG - chr3_4:55651219-55651238 Msa0507960:intron 35.0%
! TCTAGTTTCTCCAATGATCT+TGG - chr3_4:55651355-55651374 Msa0507960:intron 35.0%
TTACAAACCTCCAAGATCAT+TGG + chr3_4:55651368-55651387 None:intergenic 35.0%
! TCAATGTGTTATTAGGTGGA+AGG - chr3_4:55651559-55651578 Msa0507960:intron 35.0%
!! TGGTGTTGCACAAAAGAGAA+AGG + chr3_4:55648244-55648263 None:intergenic 40.0%
! ATTTCAAGGAGTTGGTCTAG+TGG - chr3_4:55648972-55648991 Msa0507960:CDS 40.0%
AAGTAAGTAAAAAGAGGGGG+AGG - chr3_4:55649106-55649125 Msa0507960:intron 40.0%
! CCTGAGGAAACTTTTGTGTT+TGG + chr3_4:55649279-55649298 None:intergenic 40.0%
CCAAACACAAAAGTTTCCTC+AGG - chr3_4:55649276-55649295 Msa0507960:CDS 40.0%
TTCCTCTTGTGATGTCTTGT+TGG + chr3_4:55649395-55649414 None:intergenic 40.0%
ACAAGACATCACAAGAGGAA+AGG - chr3_4:55649395-55649414 Msa0507960:CDS 40.0%
CAAGACATCACAAGAGGAAA+GGG - chr3_4:55649396-55649415 Msa0507960:CDS 40.0%
TAATGAGTTCCAGCATCTTG+TGG + chr3_4:55649447-55649466 None:intergenic 40.0%
ACAAGCTTGTCCATAAAAGC+AGG + chr3_4:55649643-55649662 None:intergenic 40.0%
ACATACCTTGATGTTGGGTA+GGG + chr3_4:55649692-55649711 None:intergenic 40.0%
TACATACCTTGATGTTGGGT+AGG + chr3_4:55649693-55649712 None:intergenic 40.0%
TGATAGGTTCCTCTCATTCT+TGG - chr3_4:55649795-55649814 Msa0507960:intron 40.0%
AACTCACTTGATTCCCATCT+TGG + chr3_4:55649874-55649893 None:intergenic 40.0%
AAGCATGTTGTGCATGGAAT+TGG + chr3_4:55649918-55649937 None:intergenic 40.0%
! ACTAGAAAGCATGTTGTGCA+TGG + chr3_4:55649924-55649943 None:intergenic 40.0%
! CTCTGTCTGATCAATTTTGC+TGG + chr3_4:55650573-55650592 None:intergenic 40.0%
! TGATAATGTCAGAGGCTTCA+CGG + chr3_4:55650599-55650618 None:intergenic 40.0%
GTTGTTGACAGTGTATTGTG+TGG + chr3_4:55650688-55650707 None:intergenic 40.0%
ATACACTGTCAACAACCAGA+TGG - chr3_4:55650692-55650711 Msa0507960:CDS 40.0%
ATCAGCAATGTTCATGAGTG+TGG + chr3_4:55650724-55650743 None:intergenic 40.0%
! CTTCCTTGTTGTACATACCA+GGG + chr3_4:55650767-55650786 None:intergenic 40.0%
! TCTTCCTTGTTGTACATACC+AGG + chr3_4:55650768-55650787 None:intergenic 40.0%
TCGTATGGAGAAGTTCTACT+GGG - chr3_4:55650860-55650879 Msa0507960:CDS 40.0%
TTCCAATGCAGACACCAATA+CGG + chr3_4:55650902-55650921 None:intergenic 40.0%
CTTTAGCGATATTGTCATGG+CGG + chr3_4:55650929-55650948 None:intergenic 40.0%
AGATAGGTATACCGATGGAT+TGG + chr3_4:55650986-55651005 None:intergenic 40.0%
! AGATTTCTTCGGTGCATTGA+GGG - chr3_4:55651077-55651096 Msa0507960:intron 40.0%
AAGCTTGTGAACTCAAAGGA+AGG - chr3_4:55651165-55651184 Msa0507960:intron 40.0%
GAATGTGAAGAGAGTCCAAT+TGG - chr3_4:55651266-55651285 Msa0507960:intron 40.0%
CCAAATACTTGTCTGCCAAT+TGG + chr3_4:55651284-55651303 None:intergenic 40.0%
CCAATTGGCAGACAAGTATT+TGG - chr3_4:55651281-55651300 Msa0507960:intron 40.0%
TTGGCAGACAAGTATTTGGA+AGG - chr3_4:55651285-55651304 Msa0507960:intron 40.0%
AGTTTCTCCAATGATCTTGG+AGG - chr3_4:55651358-55651377 Msa0507960:intron 40.0%
!! ATCTTGGGTTTGTTATGTGC+AGG - chr3_4:55651451-55651470 Msa0507960:intron 40.0%
AGTAGTTGCATCGAAGTTTG+AGG + chr3_4:55651507-55651526 None:intergenic 40.0%
GCAACTACTAGAAGTTGTGA+TGG - chr3_4:55651518-55651537 Msa0507960:intron 40.0%
ACCAATCAGTGCAGTATCCA+TGG - chr3_4:55648260-55648279 Msa0507960:three_prime_UTR 45.0%
AGTTGAAACTGAAGCAGCCA+TGG + chr3_4:55648280-55648299 None:intergenic 45.0%
GCTGCTTCAGTTTCAACTGT+TGG - chr3_4:55648282-55648301 Msa0507960:three_prime_UTR 45.0%
ACGTTGCAGATGAGCTTGAA+TGG - chr3_4:55649177-55649196 Msa0507960:CDS 45.0%
TTGAATGGCTCAGTAGTAGC+TGG - chr3_4:55649192-55649211 Msa0507960:CDS 45.0%
GATGACAGTAAACAGACCGA+CGG - chr3_4:55649330-55649349 Msa0507960:CDS 45.0%
GACCAACAAGACATCACAAG+AGG - chr3_4:55649390-55649409 Msa0507960:CDS 45.0%
CATCACAAGAGGAAAGGGTT+TGG - chr3_4:55649401-55649420 Msa0507960:CDS 45.0%
GGGTAGGGTCAAGAAATTCT+TGG + chr3_4:55649677-55649696 None:intergenic 45.0%
TTCCTCTCATTCTTGGAGTC+TGG - chr3_4:55649802-55649821 Msa0507960:intron 45.0%
TCCTCTCATTCTTGGAGTCT+GGG - chr3_4:55649803-55649822 Msa0507960:intron 45.0%
TGAGCTTGTCTTTGCCAAGA+TGG - chr3_4:55649857-55649876 Msa0507960:intron 45.0%
GAGCTTGTCTTTGCCAAGAT+GGG - chr3_4:55649858-55649877 Msa0507960:intron 45.0%
! CGCTATCTTGGAGTGCTTAT+TGG + chr3_4:55650288-55650307 None:intergenic 45.0%
CTCCAGCACTCATCATGATA+GGG + chr3_4:55650524-55650543 None:intergenic 45.0%
TCTCCAGCACTCATCATGAT+AGG + chr3_4:55650525-55650544 None:intergenic 45.0%
GAGCTTGAAAGTGGAAATGC+AGG - chr3_4:55650543-55650562 Msa0507960:intron 45.0%
GTGAAGCCTCTGACATTATC+AGG - chr3_4:55650598-55650617 Msa0507960:CDS 45.0%
AGCCTCTGACATTATCAGGA+AGG - chr3_4:55650602-55650621 Msa0507960:CDS 45.0%
GCCTCTGACATTATCAGGAA+GGG - chr3_4:55650603-55650622 Msa0507960:CDS 45.0%
! TCCCTTCCTGATAATGTCAG+AGG + chr3_4:55650607-55650626 None:intergenic 45.0%
TTCATCAACGATCTCGATGC+AGG - chr3_4:55650642-55650661 Msa0507960:CDS 45.0%
TGTTGTACATACCAGGGAGT+TGG + chr3_4:55650761-55650780 None:intergenic 45.0%
ACTCCCTGGTATGTACAACA+AGG - chr3_4:55650761-55650780 Msa0507960:CDS 45.0%
TCGTTACCGGTGACAATGAT+GGG + chr3_4:55650804-55650823 None:intergenic 45.0%
ATCGTTACCGGTGACAATGA+TGG + chr3_4:55650805-55650824 None:intergenic 45.0%
ACTTCTCCATACGACCATCA+CGG + chr3_4:55650854-55650873 None:intergenic 45.0%
GTCGTATGGAGAAGTTCTAC+TGG - chr3_4:55650859-55650878 Msa0507960:CDS 45.0%
CCAATACGGTCTTCTCTAGT+AGG + chr3_4:55650888-55650907 None:intergenic 45.0%
CCTACTAGAGAAGACCGTAT+TGG - chr3_4:55650885-55650904 Msa0507960:CDS 45.0%
AAGATTGTTGACACCTTCCC+TGG - chr3_4:55650960-55650979 Msa0507960:intron 45.0%
! CAGATTTCTTCGGTGCATTG+AGG - chr3_4:55651076-55651095 Msa0507960:intron 45.0%
GAGTGTACGATGATGAAGTG+AGG - chr3_4:55651103-55651122 Msa0507960:intron 45.0%
ACGATGATGAAGTGAGGAAG+TGG - chr3_4:55651109-55651128 Msa0507960:intron 45.0%
CGATGATGAAGTGAGGAAGT+GGG - chr3_4:55651110-55651129 Msa0507960:intron 45.0%
ATCTTTGGCTGCTCAAACAC+TGG + chr3_4:55651195-55651214 None:intergenic 45.0%
!! TATTTGGAAGGTGCTGCTCT+TGG - chr3_4:55651297-55651316 Msa0507960:intron 45.0%
!!! TTTTATTATATTTTTCTTTT+TGG - chr3_4:55651605-55651624 Msa0507960:intron 5.0%
! GCCATGGATACTGCACTGAT+TGG + chr3_4:55648264-55648283 None:intergenic 50.0%
TTCCAAGCACCACAAGATGC+TGG - chr3_4:55649435-55649454 Msa0507960:CDS 50.0%
TTCCAGCATCTTGTGGTGCT+TGG + chr3_4:55649440-55649459 None:intergenic 50.0%
CTTGACCCTACCCAACATCA+AGG - chr3_4:55649684-55649703 Msa0507960:intron 50.0%
CCTCTCATTCTTGGAGTCTG+GGG - chr3_4:55649804-55649823 Msa0507960:intron 50.0%
TGGCAAAGACAAGCTCAGCT+TGG + chr3_4:55649854-55649873 None:intergenic 50.0%
AGCCCTATCATGATGAGTGC+TGG - chr3_4:55650519-55650538 Msa0507960:intron 50.0%
! AGTGCTGGAGAGCTTGAAAG+TGG - chr3_4:55650534-55650553 Msa0507960:intron 50.0%
TGAGTGTGGCATTCACCATC+TGG + chr3_4:55650710-55650729 None:intergenic 50.0%
CATACCAGGGAGTTGGACAT+TGG + chr3_4:55650754-55650773 None:intergenic 50.0%
TATGCTCCTCTCATCCGTGA+TGG - chr3_4:55650837-55650856 Msa0507960:CDS 50.0%
ATACGACCATCACGGATGAG+AGG + chr3_4:55650846-55650865 None:intergenic 50.0%
TCTCATCCGTGATGGTCGTA+TGG - chr3_4:55650845-55650864 Msa0507960:CDS 50.0%
! GACCGTATTGGTGTCTGCAT+TGG - chr3_4:55650897-55650916 Msa0507960:CDS 50.0%
!! GTATACCGATGGATTGGCCA+GGG + chr3_4:55650980-55650999 None:intergenic 50.0%
! GAAGTGAGGAAGTGGGTTTC+TGG - chr3_4:55651117-55651136 Msa0507960:intron 50.0%
!! AGGAAGTGGGTTTCTGGAGT+TGG - chr3_4:55651123-55651142 Msa0507960:intron 50.0%
TTTGGCTGCTCAAACACTGG+TGG + chr3_4:55651192-55651211 None:intergenic 50.0%
AACAGACCGACGGAGACAGA+TGG - chr3_4:55649340-55649359 Msa0507960:CDS 55.0%
CCCCAGACTCCAAGAATGAG+AGG + chr3_4:55649807-55649826 None:intergenic 55.0%
CTCATTCTTGGAGTCTGGGG+AGG - chr3_4:55649807-55649826 Msa0507960:intron 55.0%
AACGATCTCGATGCAGGAGC+AGG - chr3_4:55650648-55650667 Msa0507960:CDS 55.0%
GATGCAGGAGCAGGTCGTAT+GGG - chr3_4:55650657-55650676 Msa0507960:CDS 55.0%
CAGGGAGTTGGACATTGGTG+GGG + chr3_4:55650749-55650768 None:intergenic 55.0%
CCAGGGAGTTGGACATTGGT+GGG + chr3_4:55650750-55650769 None:intergenic 55.0%
ACCAGGGAGTTGGACATTGG+TGG + chr3_4:55650751-55650770 None:intergenic 55.0%
CGTGTGCCCATCATTGTCAC+CGG - chr3_4:55650795-55650814 Msa0507960:CDS 55.0%
ACCTTCCCTGGCCAATCCAT+CGG - chr3_4:55650972-55650991 Msa0507960:intron 55.0%
!! GGTATACCGATGGATTGGCC+AGG + chr3_4:55650981-55651000 None:intergenic 55.0%
AGACCGACGGAGACAGATGG+AGG - chr3_4:55649343-55649362 Msa0507960:CDS 60.0%
GACCGACGGAGACAGATGGA+GGG - chr3_4:55649344-55649363 Msa0507960:CDS 60.0%
ACCGACGGAGACAGATGGAG+GGG - chr3_4:55649345-55649364 Msa0507960:CDS 60.0%
ACCCCTCCATCTGTCTCCGT+CGG + chr3_4:55649349-55649368 None:intergenic 60.0%
CGGAGACAGATGGAGGGGTT+TGG - chr3_4:55649350-55649369 Msa0507960:CDS 60.0%
CTTGGAGTCTGGGGAGGCAA+AGG - chr3_4:55649813-55649832 Msa0507960:intron 60.0%
GTCTGGGGAGGCAAAGGACA+AGG - chr3_4:55649819-55649838 Msa0507960:intron 60.0%
CGATGCAGGAGCAGGTCGTA+TGG - chr3_4:55650656-55650675 Msa0507960:CDS 60.0%
CCCACCAATGTCCAACTCCC+TGG - chr3_4:55650747-55650766 Msa0507960:CDS 60.0%
!! ACCGATGGATTGGCCAGGGA+AGG + chr3_4:55650976-55650995 None:intergenic 60.0%
GCAGGAGCAGGTCGTATGGG+TGG - chr3_4:55650660-55650679 Msa0507960:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 55648211 55651898 55648211 ID=Msa0507960;Name=Msa0507960
chr3_4 mRNA 55648211 55651898 55648211 ID=Msa0507960-mRNA-1;Parent=Msa0507960;Name=Msa0507960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=68|1|1|1|0.83|0.71|7|446|437
chr3_4 exon 55648211 55648636 55648211 ID=Msa0507960-mRNA-1:exon:12431;Parent=Msa0507960-mRNA-1
chr3_4 exon 55648730 55649030 55648730 ID=Msa0507960-mRNA-1:exon:12430;Parent=Msa0507960-mRNA-1
chr3_4 exon 55649116 55649588 55649116 ID=Msa0507960-mRNA-1:exon:12429;Parent=Msa0507960-mRNA-1
chr3_4 exon 55650223 55650308 55650223 ID=Msa0507960-mRNA-1:exon:12428;Parent=Msa0507960-mRNA-1
chr3_4 exon 55650404 55650509 55650404 ID=Msa0507960-mRNA-1:exon:12427;Parent=Msa0507960-mRNA-1
chr3_4 exon 55650598 55650923 55650598 ID=Msa0507960-mRNA-1:exon:12426;Parent=Msa0507960-mRNA-1
chr3_4 exon 55651789 55651898 55651789 ID=Msa0507960-mRNA-1:exon:12425;Parent=Msa0507960-mRNA-1
chr3_4 five_prime_UTR 55651831 55651898 55651831 ID=Msa0507960-mRNA-1:five_prime_utr;Parent=Msa0507960-mRNA-1
chr3_4 CDS 55651789 55651830 55651789 ID=Msa0507960-mRNA-1:cds;Parent=Msa0507960-mRNA-1
chr3_4 CDS 55650598 55650923 55650598 ID=Msa0507960-mRNA-1:cds;Parent=Msa0507960-mRNA-1
chr3_4 CDS 55650404 55650509 55650404 ID=Msa0507960-mRNA-1:cds;Parent=Msa0507960-mRNA-1
chr3_4 CDS 55650223 55650308 55650223 ID=Msa0507960-mRNA-1:cds;Parent=Msa0507960-mRNA-1
chr3_4 CDS 55649116 55649588 55649116 ID=Msa0507960-mRNA-1:cds;Parent=Msa0507960-mRNA-1
chr3_4 CDS 55648750 55649030 55648750 ID=Msa0507960-mRNA-1:cds;Parent=Msa0507960-mRNA-1
chr3_4 three_prime_UTR 55648730 55648749 55648730 ID=Msa0507960-mRNA-1:three_prime_utr;Parent=Msa0507960-mRNA-1
chr3_4 three_prime_UTR 55648211 55648636 55648211 ID=Msa0507960-mRNA-1:three_prime_utr;Parent=Msa0507960-mRNA-1
Gene Sequence

>Msa0507960

ATGGCTGCTTCAGTTTCAACTGTTGGAGCTGTCAAAACACCAATGAGCTTGAATGGCTCAGTAGTAGCTGGACCAACAGTTTCTAATTCAGCTTTCTTCGGAACAAGCTTGAAGAAGCTTACCGCAAGACTTCCAAACACAAAAGTTTCCTCAGGAAGCTTCAAAGTTTTTGCTGCTAAAGAGATCGATGACAGTAAACAGACCGACGGAGACAGATGGAGGGGTTTGGCCTATGATATTTCAGATGACCAACAAGACATCACAAGAGGAAAGGGTTTGGTTGATTCAGTTTTCCAAGCACCACAAGATGCTGGAACTCATTATGCAGTCATGAGTTCTTATGAGTACATTAGTACTGGACTTAAACAGTACAACTTTGACAACACTATGGATGGATTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAATTTCTTGACCCTACCCAACATCAAGGTTCCTCTCATTCTTGGAGTCTGGGGAGGCAAAGGACAAGGAAAATCTTTCCAAGCTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCTATCATGATGAGTGCTGGAGAGCTTGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATCAGACAGAGATACCGTGAAGCCTCTGACATTATCAGGAAGGGAAAGATGTGTTGTTTGTTCATCAACGATCTCGATGCAGGAGCAGGTCGTATGGGTGGAACCACACAATACACTGTCAACAACCAGATGGTGAATGCCACACTCATGAACATTGCTGATAACCCCACCAATGTCCAACTCCCTGGTATGTACAACAAGGAAGACAACGCACGTGTGCCCATCATTGTCACCGGTAACGATTTCTCAACACTTTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCTCCTACTAGAGAAGACCGTATTGGTGTCTGCATTGGAATTTTCCGCCATGACAATATCGCTAAAGATGACATTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATCGATTTCTTCGGTGCATTGAGGGCTAGAGTGTACGATGATGAAGTGAGGAAGTGGGTTTCTGGAGTTGGTATTGAAACAATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCACCAGTGTTTGAGCAGCCAAAGATGACACTAGAAAAGTTGTTGGAGTATGGTAACATGCTTGTCTCAGAACAAGAGAATGTGAAGAGAGTCCAATTGGCAGACAAGTATTTGGAAGGTGCTGCTCTTGGTGATGCTAATCAAGATGCTATTAAGGAGGGAAAATTCTAG

Protein sequence

>Msa0507960

MAASVSTVGAVKTPMSLNGSVVAGPTVSNSAFFGTSLKKLTARLPNTKVSSGSFKVFAAKEIDDSKQTDGDRWRGLAYDISDDQQDITRGKGLVDSVFQAPQDAGTHYAVMSSYEYISTGLKQYNFDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGIETIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVSEQENVKRVQLADKYLEGAALGDANQDAIKEGKF*