Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398600 | AES88212.1 | 75.735 | 136 | 1 | 1 | 1 | 104 | 1 | 136 | 2.57e-61 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398600 | sp|Q2PMR7|PSBE_SOYBN | 71.951 | 82 | 23 | 0 | 1 | 82 | 1 | 82 | 7.78e-34 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398600 | A0A6A5LQW0 | 72.527 | 91 | 18 | 1 | 1 | 84 | 1 | 91 | 7.76e-36 | 126 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0398600 | 0.828079 | 1.097155e-54 | -8.615850e-47 |
| Msa0011410 | Msa0398600 | 0.800655 | 1.301809e-48 | -8.615850e-47 |
| Msa0011440 | Msa0398600 | 0.811627 | 6.369630e-51 | -8.615850e-47 |
| Msa0017300 | Msa0398600 | 0.823069 | 1.689343e-53 | -8.615850e-47 |
| Msa0029520 | Msa0398600 | 0.803464 | 3.443091e-49 | -8.615850e-47 |
| Msa0032890 | Msa0398600 | 0.819607 | 1.062863e-52 | -8.615850e-47 |
| Msa0032930 | Msa0398600 | 0.819606 | 1.063175e-52 | -8.615850e-47 |
| Msa0033840 | Msa0398600 | 0.807415 | 5.111712e-50 | -8.615850e-47 |
| Msa0065670 | Msa0398600 | 0.824648 | 7.203779e-54 | -8.615850e-47 |
| Msa0066890 | Msa0398600 | 0.800836 | 1.195299e-48 | -8.615850e-47 |
| Msa0067590 | Msa0398600 | 0.801561 | 8.495884e-49 | -8.615850e-47 |
| Msa0074860 | Msa0398600 | 0.803618 | 3.198378e-49 | -8.615850e-47 |
| Msa0075990 | Msa0398600 | 0.810963 | 8.877284e-51 | -8.615850e-47 |
| Msa0080060 | Msa0398600 | 0.835677 | 1.459508e-56 | -8.615850e-47 |
| Msa0081610 | Msa0398600 | 0.860479 | 2.007121e-63 | -8.615850e-47 |
| Msa0095230 | Msa0398600 | 0.806815 | 6.846893e-50 | -8.615850e-47 |
| Msa0095810 | Msa0398600 | 0.820873 | 5.448447e-53 | -8.615850e-47 |
| Msa0098500 | Msa0398600 | 0.824723 | 6.915550e-54 | -8.615850e-47 |
| Msa0111110 | Msa0398600 | 0.833436 | 5.340632e-56 | -8.615850e-47 |
| Msa0127220 | Msa0398600 | 0.804317 | 2.289287e-49 | -8.615850e-47 |
| Msa0127350 | Msa0398600 | 0.803160 | 3.979483e-49 | -8.615850e-47 |
| Msa0127910 | Msa0398600 | 0.810286 | 1.242785e-50 | -8.615850e-47 |
| Msa0129820 | Msa0398600 | 0.809252 | 2.074296e-50 | -8.615850e-47 |
| Msa0138990 | Msa0398600 | 0.811631 | 6.355164e-51 | -8.615850e-47 |
| Msa0151380 | Msa0398600 | 0.806385 | 8.438655e-50 | -8.615850e-47 |
| Msa0151510 | Msa0398600 | 0.813363 | 2.658597e-51 | -8.615850e-47 |
| Msa0154890 | Msa0398600 | 0.811674 | 6.220352e-51 | -8.615850e-47 |
| Msa0158890 | Msa0398600 | 0.805761 | 1.141842e-49 | -8.615850e-47 |
| Msa0163540 | Msa0398600 | 0.809251 | 2.075317e-50 | -8.615850e-47 |
| Msa0168770 | Msa0398600 | 0.839037 | 2.013250e-57 | -8.615850e-47 |
| Msa0173580 | Msa0398600 | 0.806967 | 6.358930e-50 | -8.615850e-47 |
| Msa0173950 | Msa0398600 | 0.868992 | 4.320768e-66 | -8.615850e-47 |
| Msa0221850 | Msa0398600 | 0.887527 | 1.319217e-72 | -8.615850e-47 |
| Msa0223500 | Msa0398600 | 0.811733 | 6.039097e-51 | -8.615850e-47 |
| Msa0368450 | Msa0398600 | 0.839393 | 1.627531e-57 | -8.615850e-47 |
| Msa0380450 | Msa0398600 | 0.808069 | 3.711968e-50 | -8.615850e-47 |
| Msa0387630 | Msa0398600 | 0.802648 | 5.076735e-49 | -8.615850e-47 |
| Msa0389080 | Msa0398600 | 0.833160 | 6.253637e-56 | -8.615850e-47 |
| Msa0390590 | Msa0398600 | 0.812894 | 3.369498e-51 | -8.615850e-47 |
| Msa0398600 | Msa0405460 | 0.800401 | 1.466391e-48 | -8.615850e-47 |
| Msa0398600 | Msa0405470 | 0.819798 | 9.610774e-53 | -8.615850e-47 |
| Msa0398600 | Msa0432490 | 0.805715 | 1.167722e-49 | -8.615850e-47 |
| Msa0398600 | Msa0449910 | 0.889007 | 3.558790e-73 | -8.615850e-47 |
| Msa0398600 | Msa0460510 | 0.801008 | 1.102420e-48 | -8.615850e-47 |
| Msa0398600 | Msa0461620 | 0.836748 | 7.801059e-57 | -8.615850e-47 |
| Msa0398600 | Msa0476890 | 0.826572 | 2.519789e-54 | -8.615850e-47 |
| Msa0398600 | Msa0483970 | 0.801344 | 9.410382e-49 | -8.615850e-47 |
| Msa0398600 | Msa0484040 | 0.826808 | 2.213750e-54 | -8.615850e-47 |
| Msa0398600 | Msa0484670 | 0.813882 | 2.043810e-51 | -8.615850e-47 |
| Msa0398600 | Msa0493180 | 0.893009 | 9.360660e-75 | -8.615850e-47 |
| Msa0398600 | Msa0502900 | 0.815691 | 8.121031e-52 | -8.615850e-47 |
| Msa0398600 | Msa0507960 | 0.826749 | 2.287378e-54 | -8.615850e-47 |
| Msa0398600 | Msa0521260 | 0.818613 | 1.789327e-52 | -8.615850e-47 |
| Msa0398600 | Msa0550980 | 0.823367 | 1.438947e-53 | -8.615850e-47 |
| Msa0398600 | Msa0550990 | 0.825294 | 5.070128e-54 | -8.615850e-47 |
| Msa0398600 | Msa0554770 | 0.800996 | 1.108958e-48 | -8.615850e-47 |
| Msa0398600 | Msa0557440 | 0.800401 | 1.466391e-48 | -8.615850e-47 |
| Msa0398600 | Msa0559440 | 0.807662 | 4.531505e-50 | -8.615850e-47 |
| Msa0398600 | Msa0559640 | 0.803149 | 4.000448e-49 | -8.615850e-47 |
| Msa0398600 | Msa0576020 | 0.810046 | 1.400485e-50 | -8.615850e-47 |
| Msa0398600 | Msa0577290 | 0.803259 | 3.795856e-49 | -8.615850e-47 |
| Msa0398600 | Msa0582560 | 0.816434 | 5.541121e-52 | -8.615850e-47 |
| Msa0398600 | Msa0582590 | 0.805925 | 1.054841e-49 | -8.615850e-47 |
| Msa0398600 | Msa0582840 | 0.811387 | 7.182718e-51 | -8.615850e-47 |
| Msa0398600 | Msa0582860 | 0.815350 | 9.672240e-52 | -8.615850e-47 |
| Msa0398600 | Msa0582870 | 0.809815 | 1.569837e-50 | -8.615850e-47 |
| Msa0398600 | Msa0583270 | 0.811039 | 8.545308e-51 | -8.615850e-47 |
| Msa0398600 | Msa0590620 | 0.806045 | 9.954187e-50 | -8.615850e-47 |
| Msa0398600 | Msa0591340 | 0.800458 | 1.428079e-48 | -8.615850e-47 |
| Msa0398600 | Msa0606340 | 0.823159 | 1.609453e-53 | -8.615850e-47 |
| Msa0398600 | Msa0606350 | 0.826378 | 2.803384e-54 | -8.615850e-47 |
| Msa0398600 | Msa0622930 | 0.800675 | 1.289727e-48 | -8.615850e-47 |
| Msa0398600 | Msa0649160 | 0.808077 | 3.697755e-50 | -8.615850e-47 |
| Msa0398600 | Msa0654400 | 0.813484 | 2.500359e-51 | -8.615850e-47 |
| Msa0398600 | Msa0654500 | 0.809821 | 1.565303e-50 | -8.615850e-47 |
| Msa0398600 | Msa0654570 | 0.816066 | 6.695775e-52 | -8.615850e-47 |
| Msa0398600 | Msa0656570 | 0.800927 | 1.145199e-48 | -8.615850e-47 |
| Msa0398600 | Msa0690100 | 0.822735 | 2.020998e-53 | -8.615850e-47 |
| Msa0398600 | Msa0745630 | 0.801444 | 8.977872e-49 | -8.615850e-47 |
| Msa0398600 | Msa0779450 | 0.803917 | 2.772230e-49 | -8.615850e-47 |
| Msa0398600 | Msa0788450 | 0.813579 | 2.383171e-51 | -8.615850e-47 |
| Msa0398600 | Msa0820130 | 0.808166 | 3.539874e-50 | -8.615850e-47 |
| Msa0398600 | Msa0825570 | 0.813853 | 2.074313e-51 | -8.615850e-47 |
| Msa0398600 | Msa0826540 | 0.809849 | 1.544317e-50 | -8.615850e-47 |
| Msa0398600 | Msa0829210 | 0.822447 | 2.356929e-53 | -8.615850e-47 |
| Msa0398600 | Msa0829250 | 0.830196 | 3.364761e-55 | -8.615850e-47 |
| Msa0398600 | Msa0864820 | 0.810737 | 9.934459e-51 | -8.615850e-47 |
| Msa0398600 | Msa0869420 | 0.812779 | 3.570452e-51 | -8.615850e-47 |
| Msa0398600 | Msa0881530 | 0.820900 | 5.370363e-53 | -8.615850e-47 |
| Msa0398600 | Msa0919120 | 0.808887 | 2.483189e-50 | -8.615850e-47 |
| Msa0398600 | Msa0924830 | 0.816978 | 4.184409e-52 | -8.615850e-47 |
| Msa0398600 | Msa0924840 | 0.866129 | 3.573366e-65 | -8.615850e-47 |
| Msa0398600 | Msa0924850 | 0.804140 | 2.491432e-49 | -8.615850e-47 |
| Msa0398600 | Msa0924980 | 0.891300 | 4.504964e-74 | -8.615850e-47 |
| Msa0398600 | Msa0925030 | 0.897263 | 1.666491e-76 | -8.615850e-47 |
| Msa0398600 | Msa0931000 | 0.880263 | 6.337801e-70 | -8.615850e-47 |
| Msa0398600 | Msa0934290 | 0.813314 | 2.724844e-51 | -8.615850e-47 |
| Msa0398600 | Msa0945520 | 0.820921 | 5.312533e-53 | -8.615850e-47 |
| Msa0398600 | Msa0971690 | 0.811801 | 5.837498e-51 | -8.615850e-47 |
| Msa0398600 | Msa0971780 | 0.816940 | 4.268266e-52 | -8.615850e-47 |
| Msa0398600 | Msa0982090 | 0.837486 | 5.051303e-57 | -8.615850e-47 |
| Msa0398600 | Msa0983680 | 0.812068 | 5.105316e-51 | -8.615850e-47 |
| Msa0398600 | Msa1017610 | 0.807861 | 4.109319e-50 | -8.615850e-47 |
| Msa0398600 | Msa1039150 | 0.802242 | 6.157530e-49 | -8.615850e-47 |
| Msa0398600 | Msa1057940 | 0.800364 | 1.492437e-48 | -8.615850e-47 |
| Msa0398600 | Msa1078280 | 0.804184 | 2.440018e-49 | -8.615850e-47 |
| Msa0398600 | Msa1084680 | 0.806248 | 9.021041e-50 | -8.615850e-47 |
| Msa0398600 | Msa1086030 | 0.802411 | 5.683711e-49 | -8.615850e-47 |
| Msa0398600 | Msa1086200 | 0.806951 | 6.408193e-50 | -8.615850e-47 |
| Msa0398600 | Msa1086320 | 0.817214 | 3.703500e-52 | -8.615850e-47 |
| Msa0398600 | Msa1086350 | 0.826282 | 2.955646e-54 | -8.615850e-47 |
| Msa0398600 | Msa1086360 | 0.804200 | 2.421347e-49 | -8.615850e-47 |
| Msa0398600 | Msa1086420 | 0.814364 | 1.600119e-51 | -8.615850e-47 |
| Msa0398600 | Msa1086490 | 0.834610 | 2.713687e-56 | -8.615850e-47 |
| Msa0398600 | Msa1086510 | 0.802935 | 4.430348e-49 | -8.615850e-47 |
| Msa0398600 | Msa1086640 | 0.814404 | 1.567856e-51 | -8.615850e-47 |
| Msa0398600 | Msa1086670 | 0.838543 | 2.701627e-57 | -8.615850e-47 |
| Msa0398600 | Msa1086680 | 0.811100 | 8.290416e-51 | -8.615850e-47 |
| Msa0398600 | Msa1086840 | 0.825003 | 5.938920e-54 | -8.615850e-47 |
| Msa0398600 | Msa1086900 | 0.809480 | 1.853646e-50 | -8.615850e-47 |
| Msa0398600 | Msa1091700 | 0.812211 | 4.752424e-51 | -8.615850e-47 |
| Msa0398600 | Msa1091710 | 0.874072 | 8.987589e-68 | -8.615850e-47 |
| Msa0398600 | Msa1117770 | 0.800807 | 1.211817e-48 | -8.615850e-47 |
| Msa0398600 | Msa1121720 | 0.818883 | 1.553668e-52 | -8.615850e-47 |
| Msa0398600 | Msa1129120 | 0.803229 | 3.850618e-49 | -8.615850e-47 |
| Msa0398600 | Msa1143170 | 0.810012 | 1.423906e-50 | -8.615850e-47 |
| Msa0398600 | Msa1144380 | 0.806921 | 6.505222e-50 | -8.615850e-47 |
| Msa0398600 | Msa1181370 | 0.816013 | 6.881456e-52 | -8.615850e-47 |
| Msa0398600 | Msa1197740 | 0.808138 | 3.587748e-50 | -8.615850e-47 |
| Msa0398600 | Msa1199540 | 0.805233 | 1.473541e-49 | -8.615850e-47 |
| Msa0398600 | Msa1212210 | 0.804827 | 1.791874e-49 | -8.615850e-47 |
| Msa0398600 | Msa1236120 | 0.807734 | 4.373657e-50 | -8.615850e-47 |
| Msa0398600 | Msa1236190 | 0.811821 | 5.779656e-51 | -8.615850e-47 |
| Msa0398600 | Msa1251440 | 0.803799 | 2.933317e-49 | -8.615850e-47 |
| Msa0398600 | Msa1260640 | 0.811312 | 7.455334e-51 | -8.615850e-47 |
| Msa0398600 | Msa1273620 | 0.834225 | 3.389516e-56 | -8.615850e-47 |
| Msa0398600 | Msa1279250 | 0.814067 | 1.860655e-51 | -8.615850e-47 |
| Msa0398600 | Msa1305970 | 0.833822 | 4.275300e-56 | -8.615850e-47 |
| Msa0398600 | Msa1311600 | 0.807912 | 4.007983e-50 | -8.615850e-47 |
| Msa0398600 | Msa1354860 | 0.806850 | 6.733795e-50 | -8.615850e-47 |
| Msa0398600 | Msa1354920 | 0.802451 | 5.575612e-49 | -8.615850e-47 |
| Msa0398600 | Msa1355030 | 0.800485 | 1.409803e-48 | -8.615850e-47 |
| Msa0398600 | Msa1355090 | 0.802640 | 5.096683e-49 | -8.615850e-47 |
| Msa0398600 | Msa1356100 | 0.816003 | 6.918275e-52 | -8.615850e-47 |
| Msa0398600 | Msa1381870 | 0.801619 | 8.264859e-49 | -8.615850e-47 |
| Msa0398600 | Msa1382380 | 0.834654 | 2.645259e-56 | -8.615850e-47 |
| Msa0398600 | Msa1386180 | 0.810168 | 1.318026e-50 | -8.615850e-47 |
| Msa0398600 | Msa1386580 | 0.800031 | 1.743766e-48 | -8.615850e-47 |
| Msa0398600 | Msa1388720 | 0.800979 | 1.117956e-48 | -8.615850e-47 |
| Msa0398600 | Msa1389670 | 0.823777 | 1.153735e-53 | -8.615850e-47 |
| Msa0398600 | Msa1394080 | 0.818607 | 1.794409e-52 | -8.615850e-47 |
| Msa0398600 | Msa1394270 | 0.816054 | 6.739301e-52 | -8.615850e-47 |
| Msa0398600 | Msa1397560 | 0.803567 | 3.277638e-49 | -8.615850e-47 |
| Msa0398600 | Msa1410480 | 0.831734 | 1.411404e-55 | -8.615850e-47 |
| Msa0398600 | Msa1410500 | 0.820830 | 5.573424e-53 | -8.615850e-47 |
| Msa0398600 | Msa1412800 | 0.809065 | 2.274894e-50 | -8.615850e-47 |
| Msa0398600 | Msa1421520 | 0.814548 | 1.456444e-51 | -8.615850e-47 |
| Msa0398600 | Msa1440140 | 0.801629 | 8.228081e-49 | -8.615850e-47 |
| Msa0398600 | Msa1444770 | 0.810851 | 9.382767e-51 | -8.615850e-47 |
| Msa0398600 | Msa1459130 | 0.804651 | 1.950538e-49 | -8.615850e-47 |
| Msa0261350 | Msa0398600 | 0.809978 | 1.448135e-50 | -8.615850e-47 |
| Msa0268210 | Msa0398600 | 0.834716 | 2.551887e-56 | -8.615850e-47 |
| Msa0268350 | Msa0398600 | 0.817710 | 2.863442e-52 | -8.615850e-47 |
| Msa0268450 | Msa0398600 | 0.838331 | 3.064201e-57 | -8.615850e-47 |
| Msa0268510 | Msa0398600 | 0.833854 | 4.198711e-56 | -8.615850e-47 |
| Msa0268660 | Msa0398600 | 0.829338 | 5.444358e-55 | -8.615850e-47 |
| Msa0268670 | Msa0398600 | 0.834998 | 2.166550e-56 | -8.615850e-47 |
| Msa0268700 | Msa0398600 | 0.811087 | 8.341811e-51 | -8.615850e-47 |
| Msa0268750 | Msa0398600 | 0.800477 | 1.415041e-48 | -8.615850e-47 |
| Msa0268860 | Msa0398600 | 0.803119 | 4.058278e-49 | -8.615850e-47 |
| Msa0268880 | Msa0398600 | 0.822815 | 1.935345e-53 | -8.615850e-47 |
| Msa0269090 | Msa0398600 | 0.817650 | 2.953315e-52 | -8.615850e-47 |
| Msa0293720 | Msa0398600 | -0.805907 | 1.063850e-49 | -8.615850e-47 |
| Msa0295030 | Msa0398600 | 0.805418 | 1.347791e-49 | -8.615850e-47 |
| Msa0331070 | Msa0398600 | 0.807194 | 5.694504e-50 | -8.615850e-47 |
| Msa0334450 | Msa0398600 | 0.802142 | 6.454031e-49 | -8.615850e-47 |
| Msa0340700 | Msa0398600 | 0.815585 | 8.573449e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398600 | MtrunA17_CPg0492821 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 6.38e-34 | 112 |
| Msa0398600 | MtrunA17_Chr4g0016851 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 6.38e-34 | 112 |
| Msa0398600 | MtrunA17_Chr4g0015751 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 6.38e-34 | 112 |
| Msa0398600 | MtrunA17_Chr4g0017011 | 98.148 | 54 | 1 | 0 | 1 | 54 | 1 | 54 | 2.07e-33 | 111 |
| Msa0398600 | MtrunA17_Chr5g0423051 | 96.296 | 54 | 2 | 0 | 1 | 54 | 1 | 54 | 3.52e-32 | 107 |
| Msa0398600 | MtrunA17_Chr4g0016841 | 61.538 | 91 | 21 | 2 | 14 | 104 | 9 | 85 | 4.52e-31 | 105 |
| Msa0398600 | MtrunA17_Chr6g0451331 | 90.323 | 31 | 3 | 0 | 24 | 54 | 41 | 71 | 5.28e-14 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398600 | ATCG00580.1 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 1.19e-34 | 114 |
| Msa0398600 | ATCG00560.1 | 97.297 | 37 | 1 | 0 | 68 | 104 | 2 | 38 | 3.75e-19 | 73.9 |
Find 25 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTAGCTTACGATGTATT+TGG | 0.244623 | 3_2:-20504143 | Msa0398600:CDS |
| GTAGCTCTATAATTCGGATT+AGG | 0.338134 | 3_2:+20503881 | None:intergenic |
| ATAACCAACCCGCAATGAAT+AGG | 0.348030 | 3_2:+20504177 | None:intergenic |
| TTATTACCAGTATTCGATAC+TGG | 0.348418 | 3_2:-20504226 | Msa0398600:CDS |
| TATGTGGAGCTCGGCATGTC+TGG | 0.349487 | 3_2:-20504278 | Msa0398600:exon |
| ATACCCTCCCTATTCATTGC+GGG | 0.391873 | 3_2:-20504185 | Msa0398600:CDS |
| TAACCAACCCGCAATGAATA+GGG | 0.406851 | 3_2:+20504178 | None:intergenic |
| TGAATCGTACCAGTCTCTAC+TGG | 0.410190 | 3_2:-20503823 | Msa0398600:CDS |
| ATTTCTGTAAAATACTCGTT+TGG | 0.410463 | 3_2:+20504110 | None:intergenic |
| TGTGTCGTAGCTCTATAATT+CGG | 0.415726 | 3_2:+20503875 | None:intergenic |
| AATAATCCAGTATCGAATAC+TGG | 0.423687 | 3_2:+20504220 | None:intergenic |
| CTCGGCATGTCTGGAAGCAC+AGG | 0.508926 | 3_2:-20504269 | Msa0398600:exon |
| ATTCGGATTAGGTTTATCGT+TGG | 0.512045 | 3_2:+20503892 | None:intergenic |
| GAATCGTACCAGTCTCTACT+GGG | 0.515213 | 3_2:-20503822 | Msa0398600:CDS |
| TTTGACTGTATAAGAATATG+TGG | 0.517465 | 3_2:-20504294 | None:intergenic |
| GGTTGGTTATTTGTCAGCAC+GGG | 0.523918 | 3_2:-20504164 | Msa0398600:CDS |
| GGGTTGGTTATTTGTCAGCA+CGG | 0.532372 | 3_2:-20504165 | Msa0398600:CDS |
| CCTCCCTATTCATTGCGGGT+TGG | 0.536548 | 3_2:-20504181 | Msa0398600:CDS |
| GTAAAATACTCGTTTGGACG+AGG | 0.550593 | 3_2:+20504116 | None:intergenic |
| TAATAAACCCCAGTAGAGAC+TGG | 0.572062 | 3_2:+20503814 | None:intergenic |
| GTATAAGAATATGTGGAGCT+CGG | 0.584815 | 3_2:-20504287 | None:intergenic |
| TATACCCTCCCTATTCATTG+CGG | 0.586067 | 3_2:-20504186 | Msa0398600:CDS |
| CAACCCGCAATGAATAGGGA+GGG | 0.665638 | 3_2:+20504182 | None:intergenic |
| CCAACCCGCAATGAATAGGG+AGG | 0.678708 | 3_2:+20504181 | None:intergenic |
| AATCGTACCAGTCTCTACTG+GGG | 0.711157 | 3_2:-20503821 | Msa0398600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTTAGTAGATCTTTTT+AGG | - | chr3_2:20504016-20504035 | Msa0398600:intron | 20.0% |
| !!! | ATTCAACATTTTGTTCATTT+GGG | + | chr3_2:20504206-20504225 | None:intergenic | 20.0% |
| !!! | AATTCAACATTTTGTTCATT+TGG | + | chr3_2:20504207-20504226 | None:intergenic | 20.0% |
| ! | ATTTCTGTAAAATACTCGTT+TGG | + | chr3_2:20503942-20503961 | None:intergenic | 25.0% |
| ! | TTATTAATGGAATTCCTTGT+CGG | + | chr3_2:20503965-20503984 | None:intergenic | 25.0% |
| !!! | ATTTAGTAGATCTTTTTAGG+AGG | - | chr3_2:20504019-20504038 | Msa0398600:intron | 25.0% |
| ! | TATTGATCCCAAAAAAAAGA+CGG | + | chr3_2:20504120-20504139 | None:intergenic | 25.0% |
| TTATTACCAGTATTCGATAC+TGG | - | chr3_2:20503823-20503842 | Msa0398600:CDS | 30.0% | |
| ! | AATAATCCAGTATCGAATAC+TGG | + | chr3_2:20503832-20503851 | None:intergenic | 30.0% |
| ! | TATTTTACAGAAATCCGACA+AGG | - | chr3_2:20503948-20503967 | Msa0398600:intron | 30.0% |
| CAAGGAATTCCATTAATAAC+TGG | - | chr3_2:20503966-20503985 | Msa0398600:intron | 30.0% | |
| GTTGTTCCAAAGAATCAAAA+CGG | + | chr3_2:20503992-20504011 | None:intergenic | 30.0% | |
| AACCATCGTACTGTAAAAAT+GGG | + | chr3_2:20504071-20504090 | None:intergenic | 30.0% | |
| ! | GGTTTAGCTTACGATGTATT+TGG | - | chr3_2:20503906-20503925 | Msa0398600:intron | 35.0% |
| TCAAAACGGCCAGTTATTAA+TGG | + | chr3_2:20503978-20503997 | None:intergenic | 35.0% | |
| TCGTACTGTAAAAATGGGAT+AGG | + | chr3_2:20504066-20504085 | None:intergenic | 35.0% | |
| !! | ATCCCATTTTTACAGTACGA+TGG | - | chr3_2:20504066-20504085 | Msa0398600:intron | 35.0% |
| CAACCATCGTACTGTAAAAA+TGG | + | chr3_2:20504072-20504091 | None:intergenic | 35.0% | |
| ! | CATTTTTACAGTACGATGGT+TGG | - | chr3_2:20504070-20504089 | Msa0398600:intron | 35.0% |
| ! | ATTCGGATTAGGTTTATCGT+TGG | + | chr3_2:20504160-20504179 | None:intergenic | 35.0% |
| ! | GTAGCTCTATAATTCGGATT+AGG | + | chr3_2:20504171-20504190 | None:intergenic | 35.0% |
| ! | TGTGTCGTAGCTCTATAATT+CGG | + | chr3_2:20504177-20504196 | None:intergenic | 35.0% |
| TATACCCTCCCTATTCATTG+CGG | - | chr3_2:20503863-20503882 | Msa0398600:CDS | 40.0% | |
| TAACCAACCCGCAATGAATA+GGG | + | chr3_2:20503874-20503893 | None:intergenic | 40.0% | |
| ATAACCAACCCGCAATGAAT+AGG | + | chr3_2:20503875-20503894 | None:intergenic | 40.0% | |
| GTAAAATACTCGTTTGGACG+AGG | + | chr3_2:20503936-20503955 | None:intergenic | 40.0% | |
| !!! | AACTGGCCGTTTTGATTCTT+TGG | - | chr3_2:20503983-20504002 | Msa0398600:intron | 40.0% |
| TAGGTCCTATCTATGGTCAT+TGG | + | chr3_2:20504047-20504066 | None:intergenic | 40.0% | |
| AATGGGATAGGTCCTATCTA+TGG | + | chr3_2:20504054-20504073 | None:intergenic | 40.0% | |
| !!! | GTACCCACCGTCTTTTTTTT+GGG | - | chr3_2:20504110-20504129 | Msa0398600:intron | 40.0% |
| GATCCCAAAAAAAAGACGGT+GGG | + | chr3_2:20504116-20504135 | None:intergenic | 40.0% | |
| TGATCCCAAAAAAAAGACGG+TGG | + | chr3_2:20504117-20504136 | None:intergenic | 40.0% | |
| TAATAAACCCCAGTAGAGAC+TGG | + | chr3_2:20504238-20504257 | None:intergenic | 40.0% | |
| ATACCCTCCCTATTCATTGC+GGG | - | chr3_2:20503864-20503883 | Msa0398600:CDS | 45.0% | |
| !! | GGGTTGGTTATTTGTCAGCA+CGG | - | chr3_2:20503884-20503903 | Msa0398600:CDS | 45.0% |
| ! | GGTTGGTTATTTGTCAGCAC+GGG | - | chr3_2:20503885-20503904 | Msa0398600:CDS | 45.0% |
| AGGCTCCAATGACCATAGAT+AGG | - | chr3_2:20504039-20504058 | Msa0398600:intron | 45.0% | |
| !!! | GGTACCCACCGTCTTTTTTT+TGG | - | chr3_2:20504109-20504128 | Msa0398600:intron | 45.0% |
| TGAATCGTACCAGTCTCTAC+TGG | - | chr3_2:20504226-20504245 | Msa0398600:CDS | 45.0% | |
| GAATCGTACCAGTCTCTACT+GGG | - | chr3_2:20504227-20504246 | Msa0398600:CDS | 45.0% | |
| AATCGTACCAGTCTCTACTG+GGG | - | chr3_2:20504228-20504247 | Msa0398600:CDS | 45.0% | |
| CAACCCGCAATGAATAGGGA+GGG | + | chr3_2:20503870-20503889 | None:intergenic | 50.0% | |
| ! | GTACGATGGTTGGCTGTTCA+CGG | - | chr3_2:20504080-20504099 | Msa0398600:intron | 50.0% |
| TATGTGGAGCTCGGCATGTC+TGG | - | chr3_2:20503771-20503790 | Msa0398600:CDS | 55.0% | |
| CCAACCCGCAATGAATAGGG+AGG | + | chr3_2:20503871-20503890 | None:intergenic | 55.0% | |
| CCTCCCTATTCATTGCGGGT+TGG | - | chr3_2:20503868-20503887 | Msa0398600:CDS | 55.0% | |
| !! | GTTGGCTGTTCACGGACTAG+CGG | - | chr3_2:20504088-20504107 | Msa0398600:intron | 55.0% |
| ! | CTCGGCATGTCTGGAAGCAC+AGG | - | chr3_2:20503780-20503799 | Msa0398600:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 20503769 | 20504302 | 20503769 | ID=Msa0398600;Name=Msa0398600 |
| chr3_2 | mRNA | 20503769 | 20504302 | 20503769 | ID=Msa0398600-mRNA-1;Parent=Msa0398600;Name=Msa0398600-mRNA-1;_AED=0.22;_eAED=0.22;_QI=17|0|0|1|0|0|2|0|104 |
| chr3_2 | exon | 20504125 | 20504302 | 20504125 | ID=Msa0398600-mRNA-1:exon:4476;Parent=Msa0398600-mRNA-1 |
| chr3_2 | exon | 20503769 | 20503919 | 20503769 | ID=Msa0398600-mRNA-1:exon:4475;Parent=Msa0398600-mRNA-1 |
| chr3_2 | five_prime_UTR | 20504286 | 20504302 | 20504286 | ID=Msa0398600-mRNA-1:five_prime_utr;Parent=Msa0398600-mRNA-1 |
| chr3_2 | CDS | 20504125 | 20504285 | 20504125 | ID=Msa0398600-mRNA-1:cds;Parent=Msa0398600-mRNA-1 |
| chr3_2 | CDS | 20503769 | 20503919 | 20503769 | ID=Msa0398600-mRNA-1:cds;Parent=Msa0398600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
