AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0080060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080060 MtrunA17_Chr1g0191941 89.055 402 42 1 79 480 7 406 0.0 728
Msa0080060 MtrunA17_Chr7g0272711 53.961 467 201 6 25 480 22 485 6.39e-161 464
Msa0080060 MtrunA17_Chr2g0296331 46.908 469 232 4 28 479 16 484 6.12e-146 426
Msa0080060 MtrunA17_Chr4g0066981 47.537 467 221 4 28 479 23 480 3.77e-141 414
Msa0080060 MtrunA17_Chr1g0191951 94.872 78 4 0 1 78 1 78 3.19e-47 158
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080060 AT1G09020.1 48.884 493 232 4 1 480 1 486 7.44e-156 452

Find 135 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATACTTCCAACGTGTTTA+AGG 0.148528 1_2:-58262731 Msa0080060:CDS
CCATTCCTCACTTGTTTGTT+TGG 0.213376 1_2:-58268411 Msa0080060:CDS
TGGCTCCTGTGTGGGATTCT+AGG 0.216648 1_2:-58265437 Msa0080060:CDS
GTTCAATACGTTTGGGTAGA+TGG 0.239481 1_2:-58263642 Msa0080060:CDS
GTTTAATGGTCACTTTCTTT+AGG 0.241162 1_2:-58262359 Msa0080060:three_prime_UTR
GTTCATATTTATATTAATTT+AGG 0.248545 1_2:+58268621 None:intergenic
CACTTGTTTGTTTGGCCTCA+TGG 0.250434 1_2:-58268403 Msa0080060:CDS
CACTTTCTTTAGGATGAAAT+TGG 0.252484 1_2:-58262349 Msa0080060:three_prime_UTR
ATACCAATTGTGGATGATTC+TGG 0.255262 1_2:-58263357 Msa0080060:CDS
CGTTGCAATTGGCTGTTTAT+TGG 0.259307 1_2:+58263600 None:intergenic
TTTCTATGCGGTTCTTTCAC+TGG 0.272488 1_2:-58268367 Msa0080060:CDS
ATGCTTTCAGGAAGTATCTT+TGG 0.275765 1_2:-58265457 Msa0080060:intron
AACTCAAGTTTCTTGTTGTT+TGG 0.276317 1_2:+58268859 None:intergenic
AAGCGTTTCAAGAACGATTA+TGG 0.296514 1_2:-58263694 Msa0080060:CDS
ACCGATTGGTTCAATACGTT+TGG 0.299005 1_2:-58263650 Msa0080060:CDS
ATTGTTGGGTTAGTTTAGTT+TGG 0.300163 1_2:-58262421 Msa0080060:exon
ATGGAACGCTTTGCTAATTC+TGG 0.300906 1_2:-58262687 Msa0080060:intron
GCATTGAATTTGAGACAAAT+TGG 0.317046 1_2:-58262771 Msa0080060:CDS
GAAAAGCGCTTAACCGTATA+TGG 0.324882 1_2:+58268811 None:intergenic
TACTGCTTCTCATTTGCTTC+CGG 0.327253 1_2:-58265789 Msa0080060:CDS
TCTCATTTGCTTCCGGAGTC+TGG 0.337135 1_2:-58265782 Msa0080060:CDS
AACAAGTGAGGAATGGAAAA+AGG 0.342501 1_2:+58268418 None:intergenic
GAATGGGAGGAAAACTGTTT+TGG 0.348653 1_2:-58262399 Msa0080060:three_prime_UTR
ATTAAGAAATAAATTAATCT+TGG 0.356672 1_2:-58262282 Msa0080060:three_prime_UTR
GGCATCCCATGTAACATATA+TGG 0.360054 1_2:+58266515 None:intergenic
TGGGTTAGTTTAGTTTGGAA+TGG 0.379983 1_2:-58262416 Msa0080060:exon
CAGTAGCATGCATCCATATA+CGG 0.387731 1_2:-58268824 Msa0080060:five_prime_UTR
GAACGATTATGGTTCTTTGC+CGG 0.389922 1_2:-58263683 Msa0080060:CDS
CGCCACAGTGAACACTATTT+CGG 0.390725 1_2:-58266546 Msa0080060:CDS
GGGTTAGTTTAGTTTGGAAT+GGG 0.404174 1_2:-58262415 Msa0080060:exon
CCGATTGGTTCAATACGTTT+GGG 0.414058 1_2:-58263649 Msa0080060:CDS
GAGCAGCAGCCATTTATAAA+CGG 0.418064 1_2:-58266575 Msa0080060:CDS
AGCAGCAGCCATTTATAAAC+GGG 0.425365 1_2:-58266574 Msa0080060:CDS
CGAATTGAAGGCCGCCCGAC+TGG 0.426158 1_2:-58267910 Msa0080060:CDS
GCTGCAGGTAGAGGAGGAAA+TGG 0.428068 1_2:-58268475 Msa0080060:CDS
CCAATCGGTATTTGAAGAAC+CGG 0.430303 1_2:+58263664 None:intergenic
TTTGGCCTTAGCGTTGCAAT+TGG 0.432792 1_2:+58263589 None:intergenic
AGAATAATACAAATGAAAAC+AGG 0.438479 1_2:+58268789 None:intergenic
ATTGCATATTCTATATGAAC+AGG 0.444363 1_2:-58265621 Msa0080060:intron
TCTAGGAAGTGCAAGTTTGT+TGG 0.444547 1_2:-58265420 Msa0080060:CDS
AATGTGGAACTGATAGTAAT+GGG 0.445752 1_2:-58264093 Msa0080060:CDS
GGTTCATCAGCTGCAGGTAG+AGG 0.446142 1_2:-58268484 Msa0080060:CDS
TGATGTGTTCAAATTATTGT+TGG 0.453571 1_2:-58262436 Msa0080060:CDS
TTCAATACGTTTGGGTAGAT+GGG 0.455387 1_2:-58263641 Msa0080060:CDS
TTCTATGCGGTTCTTTCACT+GGG 0.457978 1_2:-58268366 Msa0080060:intron
TTACCAATGTCTCGAATTGA+AGG 0.465371 1_2:-58267922 Msa0080060:CDS
GCGGTGAACCCGTTTATAAA+TGG 0.465452 1_2:+58266566 None:intergenic
GGGTAGATGGGCGCCAAAAG+TGG 0.478271 1_2:-58263629 Msa0080060:CDS
AAGTCCTTCATCAGTAAAAG+TGG 0.478439 1_2:+58264159 None:intergenic
GAACCAGAATCATCCACAAT+TGG 0.479679 1_2:+58263354 None:intergenic
TTCAGTGCTTGAATAATGTC+CGG 0.484827 1_2:+58265384 None:intergenic
AGAGCAAACTCTGGTGTCCT+AGG 0.487042 1_2:+58265854 None:intergenic
TCACAGTGATCTTACTGCAT+TGG 0.488595 1_2:-58263230 Msa0080060:intron
GATCCCTTGCACACTCCTGC+AGG 0.489091 1_2:+58262470 None:intergenic
TAATTTGAACACATCACCTA+TGG 0.489576 1_2:+58262443 None:intergenic
GTTGTTTGCTACTTGACTCC+AGG 0.490524 1_2:-58267880 Msa0080060:CDS
GGTAGATGGGCGCCAAAAGT+GGG 0.495369 1_2:-58263628 Msa0080060:CDS
CCAAATACCGTATGAAATCC+TGG 0.498485 1_2:+58267862 None:intergenic
AGTATCTTTGGCTCCTGTGT+GGG 0.498993 1_2:-58265445 Msa0080060:CDS
CGATCCATTGCATGTGGTGA+TGG 0.505024 1_2:-58262706 Msa0080060:CDS
TATATGATGTATATTCAAGA+AGG 0.507403 1_2:-58263329 Msa0080060:intron
ATGCATTCTTCTTCCGAGGA+CGG 0.508228 1_2:-58263843 Msa0080060:CDS
CATTATTCAAGCACTGAAAG+AGG 0.510834 1_2:-58265379 Msa0080060:intron
GATGTGTTCAAATTATTGTT+GGG 0.510954 1_2:-58262435 Msa0080060:CDS
ATATTTATATTAATTTAGGC+AGG 0.512186 1_2:+58268625 None:intergenic
GAGAGATACTAAAATTATCC+AGG 0.512926 1_2:+58263179 None:intergenic
CAAATTGGAAAATGTCCTTA+CGG 0.513581 1_2:-58262756 Msa0080060:CDS
CCGGTTCTTCAAATACCGAT+TGG 0.514318 1_2:-58263664 Msa0080060:CDS
GCAGCACTAAGAGAAGCATT+TGG 0.515122 1_2:+58263571 None:intergenic
GTAATGGGAAAGCATATCCT+TGG 0.515149 1_2:-58264078 Msa0080060:CDS
CAATGTGGAACTGATAGTAA+TGG 0.515165 1_2:-58264094 Msa0080060:CDS
TGGTGGTGAAGTCTGCCTGC+AGG 0.517145 1_2:-58262485 Msa0080060:CDS
CGTTCCATCACCACATGCAA+TGG 0.521140 1_2:+58262702 None:intergenic
AAAGTGGATCGATGACTCTC+CGG 0.522520 1_2:+58264175 None:intergenic
TTAGTTTAGTTTGGAATGGG+AGG 0.524609 1_2:-58262412 Msa0080060:exon
TTTGCTTCCGGAGTCTGGCA+AGG 0.526888 1_2:-58265777 Msa0080060:intron
TGATTTGAGATTGAAATGTC+AGG 0.532626 1_2:-58268505 Msa0080060:exon
AGCTGCAGATGGGATCTACT+AGG 0.536186 1_2:+58266494 None:intergenic
CTGAGGAGTTGAGCCGTCCT+CGG 0.536297 1_2:+58263830 None:intergenic
CCCAAACGTATTGAACCAAT+CGG 0.537256 1_2:+58263649 None:intergenic
TGCTACTAGCTAGTAATCAA+AGG 0.541349 1_2:-58268552 Msa0080060:five_prime_UTR
TGTTGGAGTGCTTAGTGCAC+CGG 0.541788 1_2:-58265403 Msa0080060:CDS
AAAGGTTGAGGATCAGGTAC+TGG 0.545680 1_2:+58268436 None:intergenic
AGTTAGCTCAATACCAATTG+TGG 0.548842 1_2:-58263367 Msa0080060:CDS
ATGTCTTCTAGTCTCTCAAA+AGG 0.548979 1_2:+58263909 None:intergenic
TATTATGCATTCTTCTTCCG+AGG 0.549168 1_2:-58263847 Msa0080060:CDS
TATCAAACCTTGCCAGACTC+CGG 0.549980 1_2:+58265770 None:intergenic
TTAGGATGAAATTGGAAGGA+GGG 0.550294 1_2:-58262341 Msa0080060:three_prime_UTR
AATGTATGCTAGGATAAGCC+TGG 0.551088 1_2:-58263197 Msa0080060:CDS
AAGTATCTTTGGCTCCTGTG+TGG 0.554132 1_2:-58265446 Msa0080060:CDS
ATGTCAGGTTCATCAGCTGC+AGG 0.555266 1_2:-58268490 Msa0080060:CDS
GCAGAACCATATATGTTACA+TGG 0.555752 1_2:-58266521 Msa0080060:CDS
AACAGCCAATTGCAACGCTA+AGG 0.557100 1_2:-58263594 Msa0080060:CDS
TTCTTTAGGATGAAATTGGA+AGG 0.559424 1_2:-58262345 Msa0080060:three_prime_UTR
TCTGCCTGCAGGAGTGTGCA+AGG 0.559432 1_2:-58262474 Msa0080060:CDS
GCTATCGCTCTAATGAATCA+AGG 0.560125 1_2:-58263550 Msa0080060:intron
CCAAACAAACAAGTGAGGAA+TGG 0.562084 1_2:+58268411 None:intergenic
TTTAGGATGAAATTGGAAGG+AGG 0.565109 1_2:-58262342 Msa0080060:three_prime_UTR
AAACAACTTGAAATCCAGTC+GGG 0.566738 1_2:+58267896 None:intergenic
GAATGCATAATAGCAACTAC+TGG 0.570220 1_2:+58263858 None:intergenic
CGGCCTTCAATTCGAGACAT+TGG 0.573549 1_2:+58267919 None:intergenic
TCATCAGCTGCAGGTAGAGG+AGG 0.573943 1_2:-58268481 Msa0080060:CDS
CTTGACTCCAGGATTTCATA+CGG 0.581995 1_2:-58267869 Msa0080060:intron
TACAGGTGTTGGAGAAGTTG+TGG 0.586664 1_2:-58262505 Msa0080060:intron
AGAAACATACTTTAGCAGCA+TGG 0.589951 1_2:-58264135 Msa0080060:CDS
GAGACATGCAGAGCAAACTC+TGG 0.590289 1_2:+58265845 None:intergenic
GTAGATGGGCGCCAAAAGTG+GGG 0.591294 1_2:-58263627 Msa0080060:CDS
CTAGATGTGAAATGTATGCT+AGG 0.597927 1_2:-58263207 Msa0080060:CDS
CACAGTGAACACTATTTCGG+TGG 0.598731 1_2:-58266543 Msa0080060:CDS
GAAGTCATATGTAGCAGCTG+AGG 0.600897 1_2:+58263813 None:intergenic
TTGCATTGTGAACTGTGCTA+TGG 0.602161 1_2:+58268675 None:intergenic
GTGCAAGGGATCATTTCCAT+AGG 0.609204 1_2:-58262459 Msa0080060:CDS
CAGAACCATATATGTTACAT+GGG 0.619520 1_2:-58266520 Msa0080060:CDS
CATCACCACATGCAATGGAT+CGG 0.619982 1_2:+58262707 None:intergenic
TAGATGGGCGCCAAAAGTGG+GGG 0.625100 1_2:-58263626 Msa0080060:CDS
GTTGGAAGTATAAGTCCGTA+AGG 0.626388 1_2:+58262741 None:intergenic
CTGCCTGCAGGAGTGTGCAA+GGG 0.626861 1_2:-58262473 Msa0080060:CDS
CAAACAACTTGAAATCCAGT+CGG 0.630864 1_2:+58267895 None:intergenic
AAGGTCCGATCCATTGCATG+TGG 0.637910 1_2:-58262712 Msa0080060:CDS
CGAAATAGTGTTCACTGTGG+CGG 0.638369 1_2:+58266547 None:intergenic
GAGAGAAAATTACAGCAATG+TGG 0.643369 1_2:-58264109 Msa0080060:CDS
AGTGAATGAAAATGAGACGT+AGG 0.645002 1_2:+58268722 None:intergenic
CTTACATCAACAAAACTCCA+AGG 0.646824 1_2:+58264061 None:intergenic
TTTGTGTGGATGGTGTGTGG+CGG 0.661221 1_2:-58266604 Msa0080060:CDS
TATTAATGTCACTAGACACA+TGG 0.669317 1_2:-58266465 Msa0080060:intron
GGATCGGACCTTAAACACGT+TGG 0.671025 1_2:+58262723 None:intergenic
CAACTTGAAATCCAGTCGGG+CGG 0.674400 1_2:+58267899 None:intergenic
GGTGAAACCGCGTTTCTATG+CGG 0.677368 1_2:-58268379 Msa0080060:CDS
TGAGGCCAAACAAACAAGTG+AGG 0.681158 1_2:+58268406 None:intergenic
TTGTTTGTTTGGCCTCATGG+AGG 0.688091 1_2:-58268400 Msa0080060:CDS
AGGTGTTGGAGAAGTTGTGG+TGG 0.695836 1_2:-58262502 Msa0080060:CDS
CACTTCCTAGAATCCCACAC+AGG 0.698640 1_2:+58265432 None:intergenic
GAAAGAACCGCATAGAAACG+CGG 0.713783 1_2:+58268372 None:intergenic
AACGCGGTTTCACCTCCATG+AGG 0.729601 1_2:+58268388 None:intergenic
CACCGAAATAGTGTTCACTG+TGG 0.763286 1_2:+58266544 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTCATATTTATATTAATTT+AGG + chr1_2:58262540-58262559 None:intergenic 10.0%
!! AAGAACTAAAAAATATATAT+AGG - chr1_2:58264938-58264957 Msa0080060:intron 10.0%
!! AGAACTAAAAAATATATATA+GGG - chr1_2:58264939-58264958 Msa0080060:intron 10.0%
!!! AATTCTATTATCATTATTTT+AGG - chr1_2:58266031-58266050 Msa0080060:intron 10.0%
!! AAATATTAGAGATATTTATT+TGG - chr1_2:58266114-58266133 Msa0080060:intron 10.0%
!! AATATTAGAGATATTTATTT+GGG - chr1_2:58266115-58266134 Msa0080060:intron 10.0%
!! ATATAAATAAATATCCAAAA+TGG + chr1_2:58266218-58266237 None:intergenic 10.0%
!!! ATTTTGGATATTTATTTATA+TGG - chr1_2:58266217-58266236 Msa0080060:intron 10.0%
!!! AGATTATTTTAATATAATAC+GGG + chr1_2:58266457-58266476 None:intergenic 10.0%
!!! GAGATTATTTTAATATAATA+CGG + chr1_2:58266458-58266477 None:intergenic 10.0%
!!! TAAATTTTCTACTTAAAATT+GGG + chr1_2:58267167-58267186 None:intergenic 10.0%
!! ATACATTAAAATTAAAATAC+AGG - chr1_2:58268636-58268655 Msa0080060:five_prime_UTR 10.0%
!! ATTAAGAAATAAATTAATCT+TGG - chr1_2:58268876-58268895 Msa0080060:five_prime_UTR 10.0%
!! ATATTTATATTAATTTAGGC+AGG + chr1_2:58262536-58262555 None:intergenic 15.0%
!! AAAAAAAAAAACTTACCAAA+AGG + chr1_2:58263016-58263035 None:intergenic 15.0%
!!! GATTTTAAAAATTCATATAG+AGG + chr1_2:58263322-58263341 None:intergenic 15.0%
!!! ATATGAATTTTTAAAATCTG+AGG - chr1_2:58263324-58263343 Msa0080060:intron 15.0%
!! AGATAAATGTTAATACAAAT+CGG - chr1_2:58263596-58263615 Msa0080060:CDS 15.0%
!! AATGAAAGTTTATTTACAAT+AGG + chr1_2:58264223-58264242 None:intergenic 15.0%
!!! TCAATAAAAGAAGAATTTTT+AGG + chr1_2:58265094-58265113 None:intergenic 15.0%
!!! CTAAATATTTTTTACCATTT+AGG - chr1_2:58265956-58265975 Msa0080060:intron 15.0%
!! ATAATGATAATAGAATTCAA+TGG + chr1_2:58266028-58266047 None:intergenic 15.0%
!!! ATAGATTTTGTAAAAACAAA+TGG - chr1_2:58266491-58266510 Msa0080060:CDS 15.0%
!!! GTAAATTTTCTACTTAAAAT+TGG + chr1_2:58267168-58267187 None:intergenic 15.0%
!!! TATATTTATTTTTAATCTGC+AGG - chr1_2:58267221-58267240 Msa0080060:intron 15.0%
!! ATGTATAAATTTAATGCTAT+TGG + chr1_2:58268056-58268075 None:intergenic 15.0%
!! TTAAATTGAATATAAAGTGA+AGG - chr1_2:58268194-58268213 Msa0080060:intron 15.0%
!! GTTAAATTTCAATTAGTATA+AGG - chr1_2:58268227-58268246 Msa0080060:intron 15.0%
!! GTTAGACTAAATATATTTAT+CGG - chr1_2:58268304-58268323 Msa0080060:intron 15.0%
!! TTAGACTAAATATATTTATC+GGG - chr1_2:58268305-58268324 Msa0080060:intron 15.0%
!! AGAATAATACAAATGAAAAC+AGG + chr1_2:58262372-58262391 None:intergenic 20.0%
!! TCTAGAAAATTATTTGAGTA+TGG - chr1_2:58262941-58262960 Msa0080060:intron 20.0%
!! ATTGTATAGTTTATTCAACA+TGG - chr1_2:58263085-58263104 Msa0080060:intron 20.0%
!!! TGTTTTTGTACTATAATTTC+TGG - chr1_2:58263859-58263878 Msa0080060:CDS 20.0%
!! TAAATTTGAATCTACTCATT+TGG - chr1_2:58264432-58264451 Msa0080060:intron 20.0%
!! TAAAAATTGCATAATATGAG+AGG - chr1_2:58264494-58264513 Msa0080060:intron 20.0%
!! AAAAATTGCATAATATGAGA+GGG - chr1_2:58264495-58264514 Msa0080060:intron 20.0%
!! CTTAAGTGTGTTATATATAT+AGG - chr1_2:58264784-58264803 Msa0080060:intron 20.0%
!! AAAATATATATAGGGAGTTT+CGG - chr1_2:58264947-58264966 Msa0080060:intron 20.0%
!! TTAAAAAATTAATCGGTGAA+AGG - chr1_2:58265008-58265027 Msa0080060:intron 20.0%
!! TAAAAAATTAATCGGTGAAA+GGG - chr1_2:58265009-58265028 Msa0080060:intron 20.0%
!! AAACAATCATCAATTGAATA+AGG + chr1_2:58265044-58265063 None:intergenic 20.0%
!!! TATTCAATTGATGATTGTTT+TGG - chr1_2:58265044-58265063 Msa0080060:intron 20.0%
!!! TAAAAGAAGAATTTTTAGGA+GGG + chr1_2:58265090-58265109 None:intergenic 20.0%
!!! ATAAAAGAAGAATTTTTAGG+AGG + chr1_2:58265091-58265110 None:intergenic 20.0%
!! AAGAGAATATAAGAATAATC+AGG + chr1_2:58265178-58265197 None:intergenic 20.0%
!! GCATAAATTTCAATACTATA+AGG + chr1_2:58265236-58265255 None:intergenic 20.0%
!!! ATAGCAATTTATCTGATTTT+TGG - chr1_2:58265447-58265466 Msa0080060:CDS 20.0%
!!! AATTTGCTTAAGATAATTTC+AGG - chr1_2:58265477-58265496 Msa0080060:intron 20.0%
!! TAAAATATATATCGAACACA+AGG + chr1_2:58265672-58265691 None:intergenic 20.0%
!! TTAACTTAATATATGCTTTC+AGG - chr1_2:58265689-58265708 Msa0080060:intron 20.0%
!!! TAATTTCTTTTAACTTCACA+TGG + chr1_2:58265910-58265929 None:intergenic 20.0%
!! TGAAGTTAAAAGAAATTACA+AGG - chr1_2:58265912-58265931 Msa0080060:intron 20.0%
!! ATATTTAGCATAAATCAACT+TGG + chr1_2:58265944-58265963 None:intergenic 20.0%
!! ACTAATTAATTATGCCTAAA+TGG + chr1_2:58265973-58265992 None:intergenic 20.0%
!! AATCATTGAAATTATGTAGT+AGG - chr1_2:58266063-58266082 Msa0080060:intron 20.0%
!! ATTTATTTATATGGTATGTC+TGG - chr1_2:58266226-58266245 Msa0080060:intron 20.0%
!! GTTATACTTCAATACATTAT+TGG - chr1_2:58266285-58266304 Msa0080060:intron 20.0%
!! GGAAAATAGAATAAAAGATA+AGG + chr1_2:58266687-58266706 None:intergenic 20.0%
!!! AATTTTTCTCATATGTGTTA+AGG + chr1_2:58267125-58267144 None:intergenic 20.0%
!!! TTTAAAATTTTTGCAATGCA+AGG - chr1_2:58267275-58267294 Msa0080060:intron 20.0%
!!! AAGCTTACATTTTAGTATTT+CGG + chr1_2:58267376-58267395 None:intergenic 20.0%
!! TATATGATGTATATTCAAGA+AGG - chr1_2:58267829-58267848 Msa0080060:intron 20.0%
!!! TTTTTTTTTCTTTTTCCGTA+AGG - chr1_2:58268263-58268282 Msa0080060:intron 20.0%
!! TAAAATTAAAATACAGGTGT+TGG - chr1_2:58268642-58268661 Msa0080060:five_prime_UTR 20.0%
!!! CTTTGAAAAACTATGTTTAA+TGG - chr1_2:58268785-58268804 Msa0080060:five_prime_UTR 20.0%
!!! CTAGTTATCTATTTTATTTG+CGG - chr1_2:58268844-58268863 Msa0080060:five_prime_UTR 20.0%
!!! TGTTGTAGAGTTTTAGAAAA+CGG + chr1_2:58262408-58262427 None:intergenic 25.0%
!!! CTCAAATAATTTTCTAGAAC+AGG + chr1_2:58262939-58262958 None:intergenic 25.0%
!!! TTTGTTTTCTCATATTGCTT+GGG - chr1_2:58263478-58263497 Msa0080060:intron 25.0%
!!! ATTGTTTTGATGTTGTTTCA+AGG - chr1_2:58263659-58263678 Msa0080060:CDS 25.0%
! ATGTAATGAAAGAGTTGAAA+AGG + chr1_2:58263806-58263825 None:intergenic 25.0%
!!! GGTTTTTTTTTAAGAAGTGT+TGG - chr1_2:58264016-58264035 Msa0080060:intron 25.0%
!! TCTAAAGAGCAATTTTCAAA+GGG - chr1_2:58264169-58264188 Msa0080060:CDS 25.0%
! TCTCACAGTTATTAATGTAT+CGG - chr1_2:58264405-58264424 Msa0080060:intron 25.0%
! AAATATATGCAACAAACCAA+GGG + chr1_2:58264749-58264768 None:intergenic 25.0%
! AAAATATATGCAACAAACCA+AGG + chr1_2:58264750-58264769 None:intergenic 25.0%
!! TTTGTTGCATATATTTTGCT+TGG - chr1_2:58264753-58264772 Msa0080060:intron 25.0%
! GATTAACATTATCGTCAAAA+TGG - chr1_2:58264824-58264843 Msa0080060:intron 25.0%
!!! TGCATTTATAGTCTTGTAAT+TGG - chr1_2:58264878-58264897 Msa0080060:intron 25.0%
!! TCAGATAAATTGCTATTGAT+TGG + chr1_2:58265443-58265462 None:intergenic 25.0%
! ATTGCATATTCTATATGAAC+AGG - chr1_2:58265537-58265556 Msa0080060:intron 25.0%
! TCATGTAAATAGTGTAATGA+GGG + chr1_2:58265576-58265595 None:intergenic 25.0%
!! AAAGAGGTTTGTAGAAATTT+TGG - chr1_2:58265795-58265814 Msa0080060:CDS 25.0%
! TTGAATGAAAACTGAACAAT+TGG - chr1_2:58265827-58265846 Msa0080060:CDS 25.0%
!! TAGGTTCTAGTAAAACTATT+TGG - chr1_2:58266082-58266101 Msa0080060:intron 25.0%
!! AGGTTCTAGTAAAACTATTT+GGG - chr1_2:58266083-58266102 Msa0080060:intron 25.0%
!! GATTTATAGTTCTTCCATTT+TGG - chr1_2:58266201-58266220 Msa0080060:intron 25.0%
! TTCACTTATAGTAGAAGATA+TGG - chr1_2:58266312-58266331 Msa0080060:intron 25.0%
! TTGTAGTCAAGCTATAAATA+AGG - chr1_2:58266418-58266437 Msa0080060:intron 25.0%
! TGTAGTCAAGCTATAAATAA+GGG - chr1_2:58266419-58266438 Msa0080060:intron 25.0%
!! AATTTCCCTTATGATCTTTT+TGG - chr1_2:58266587-58266606 Msa0080060:CDS 25.0%
!! TTAGATAAATTAGGGACTTT+TGG + chr1_2:58266660-58266679 None:intergenic 25.0%
! AAGGTCTGTTAGATAAATTA+GGG + chr1_2:58266668-58266687 None:intergenic 25.0%
! TAAGGTCTGTTAGATAAATT+AGG + chr1_2:58266669-58266688 None:intergenic 25.0%
!! CTTTTATTCTATTTTCCCAA+TGG - chr1_2:58266690-58266709 Msa0080060:intron 25.0%
! CATGCATATGTTTAAAAGTT+AGG + chr1_2:58266921-58266940 None:intergenic 25.0%
!! CTAACTTTTAAACATATGCA+TGG - chr1_2:58266919-58266938 Msa0080060:intron 25.0%
! ATGTAAGCTTTCACATTTAT+TGG - chr1_2:58267386-58267405 Msa0080060:intron 25.0%
!! AATACATTTTGCTTCTAACA+TGG + chr1_2:58267702-58267721 None:intergenic 25.0%
!! TCTACATTACTTGTTGATTA+AGG - chr1_2:58268021-58268040 Msa0080060:intron 25.0%
! CATGTTTCATTAGTTCATTA+TGG + chr1_2:58268107-58268126 None:intergenic 25.0%
! CATAATGAACTAATGAAACA+TGG - chr1_2:58268105-58268124 Msa0080060:intron 25.0%
! CTAACAATATTAGCATTGTT+AGG + chr1_2:58268289-58268308 None:intergenic 25.0%
! ATATAGCAACATTTGGATAA+AGG + chr1_2:58268518-58268537 None:intergenic 25.0%
! CTTATAGATATAGCAACATT+TGG + chr1_2:58268525-58268544 None:intergenic 25.0%
! TGATGTGTTCAAATTATTGT+TGG - chr1_2:58268722-58268741 Msa0080060:five_prime_UTR 25.0%
! GATGTGTTCAAATTATTGTT+GGG - chr1_2:58268723-58268742 Msa0080060:five_prime_UTR 25.0%
!! AACTCAAGTTTCTTGTTGTT+TGG + chr1_2:58262302-58262321 None:intergenic 30.0%
! TGATTTGAGATTGAAATGTC+AGG - chr1_2:58262653-58262672 Msa0080060:intron 30.0%
ATGCTATCAAAACGAATCAA+AGG + chr1_2:58263136-58263155 None:intergenic 30.0%
!! TATTTTTGTGTATGCACAGA+TGG - chr1_2:58263204-58263223 Msa0080060:CDS 30.0%
GAAAAATGGTATTCTGATCA+AGG + chr1_2:58263421-58263440 None:intergenic 30.0%
!! GAATACCATTTTTCTCTCTT+TGG - chr1_2:58263427-58263446 Msa0080060:intron 30.0%
!! GTTTGTTTTCTCATATTGCT+TGG - chr1_2:58263477-58263496 Msa0080060:intron 30.0%
! TTGTTTTCTCATATTGCTTG+GGG - chr1_2:58263479-58263498 Msa0080060:intron 30.0%
TGCATGTAAAGCAATAGAAA+AGG + chr1_2:58263903-58263922 None:intergenic 30.0%
TACATGCAATGTTTGTATCT+TGG - chr1_2:58263915-58263934 Msa0080060:CDS 30.0%
TTGTTGTGGTTTACAACAAA+TGG - chr1_2:58263947-58263966 Msa0080060:intron 30.0%
AGACTTCCAAAATTTCTCTA+GGG + chr1_2:58264152-58264171 None:intergenic 30.0%
TAGACTTCCAAAATTTCTCT+AGG + chr1_2:58264153-58264172 None:intergenic 30.0%
! GTCTAAAGAGCAATTTTCAA+AGG - chr1_2:58264168-58264187 Msa0080060:CDS 30.0%
TTAATGATGCATTCACATTC+TGG - chr1_2:58264380-58264399 Msa0080060:intron 30.0%
GATACATTAATAACTGTGAG+AGG + chr1_2:58264406-58264425 None:intergenic 30.0%
GCACAATATCAAACATTTCA+TGG - chr1_2:58264454-58264473 Msa0080060:intron 30.0%
CAGAACCATATATGTTACAT+GGG - chr1_2:58264638-58264657 Msa0080060:intron 30.0%
!! AATATTTTCAAGCTGCAGAT+GGG + chr1_2:58264677-58264696 None:intergenic 30.0%
!! TAATATTTTCAAGCTGCAGA+TGG + chr1_2:58264678-58264697 None:intergenic 30.0%
TATTAATGTCACTAGACACA+TGG - chr1_2:58264693-58264712 Msa0080060:intron 30.0%
AATATATGCAACAAACCAAG+GGG + chr1_2:58264748-58264767 None:intergenic 30.0%
! TGCATATATTTTGCTTGGAA+AGG - chr1_2:58264758-58264777 Msa0080060:intron 30.0%
AAAAGAAAGTAGCTTAACCT+TGG - chr1_2:58265261-58265280 Msa0080060:intron 30.0%
TGGAAACATTGAAAAGACAA+AGG + chr1_2:58265423-58265442 None:intergenic 30.0%
!! GCAATTTATCTGATTTTTGG+TGG - chr1_2:58265450-58265469 Msa0080060:CDS 30.0%
TAAATAGTGTAATGAGGGAA+GGG + chr1_2:58265571-58265590 None:intergenic 30.0%
CTCATGTAAATAGTGTAATG+AGG + chr1_2:58265577-58265596 None:intergenic 30.0%
CTCATTACACTATTTACATG+AGG - chr1_2:58265575-58265594 Msa0080060:intron 30.0%
AACTGAACAATTGGCAAAAA+TGG - chr1_2:58265836-58265855 Msa0080060:CDS 30.0%
TTGGCAAAAATGGTTGAAAA+AGG - chr1_2:58265846-58265865 Msa0080060:CDS 30.0%
!!! TTTTAACTTCACATGGACTT+AGG + chr1_2:58265903-58265922 None:intergenic 30.0%
! GCTAAAAGGTACATATTTCA+AGG + chr1_2:58266150-58266169 None:intergenic 30.0%
AAGCATCAATGATAGCTAAA+AGG + chr1_2:58266164-58266183 None:intergenic 30.0%
CTAAATGCTATCTAAGAATG+AGG + chr1_2:58266351-58266370 None:intergenic 30.0%
CTCATTCTTAGATAGCATTT+AGG - chr1_2:58266349-58266368 Msa0080060:intron 30.0%
GTAGTCAAGCTATAAATAAG+GGG - chr1_2:58266420-58266439 Msa0080060:intron 30.0%
TGTAAAAACAAATGGCATAC+AGG - chr1_2:58266499-58266518 Msa0080060:CDS 30.0%
AAAGAGAGGATACCAAATAA+AGG + chr1_2:58266535-58266554 None:intergenic 30.0%
! TATTTTCCTTTCCTCATTGT+AGG - chr1_2:58266554-58266573 Msa0080060:CDS 30.0%
GAAAGCCAAAAAGATCATAA+GGG + chr1_2:58266595-58266614 None:intergenic 30.0%
TGAAAGCCAAAAAGATCATA+AGG + chr1_2:58266596-58266615 None:intergenic 30.0%
TATAGGACAGAAATAACTAC+TGG + chr1_2:58266620-58266639 None:intergenic 30.0%
TCCTATATTTGACATTGCAT+AGG - chr1_2:58266633-58266652 Msa0080060:intron 30.0%
TCCTATGCAATGTCAAATAT+AGG + chr1_2:58266637-58266656 None:intergenic 30.0%
AAACAAAGAGATTTAGCATC+GGG + chr1_2:58266799-58266818 None:intergenic 30.0%
GAAACAAAGAGATTTAGCAT+CGG + chr1_2:58266800-58266819 None:intergenic 30.0%
TCTCTATTAACACCAATGAT+TGG - chr1_2:58266892-58266911 Msa0080060:intron 30.0%
AAAGTTAGGAAACCAATCAT+TGG + chr1_2:58266907-58266926 None:intergenic 30.0%
AATGTGGAACTGATAGTAAT+GGG - chr1_2:58267065-58267084 Msa0080060:intron 30.0%
!!! TTATTTTTAATCTGCAGGCT+AGG - chr1_2:58267226-58267245 Msa0080060:intron 30.0%
! TTATTGGCTATGCGTATAAA+TGG - chr1_2:58267402-58267421 Msa0080060:intron 30.0%
! AATGGTTTGGAACTAATGTA+CGG - chr1_2:58267420-58267439 Msa0080060:intron 30.0%
! AATGTACGGAGTTAATTTTC+AGG - chr1_2:58267434-58267453 Msa0080060:intron 30.0%
GTCTAAACAAAAAAGAGACT+TGG + chr1_2:58267662-58267681 None:intergenic 30.0%
GAGAGATACTAAAATTATCC+AGG + chr1_2:58267982-58268001 None:intergenic 30.0%
!! GGATAATTTTAGTATCTCTC+AGG - chr1_2:58267982-58268001 Msa0080060:intron 30.0%
AATCAACAAGTAATGTAGAG+AGG + chr1_2:58268020-58268039 None:intergenic 30.0%
! GCATTGAATTTGAGACAAAT+TGG - chr1_2:58268387-58268406 Msa0080060:CDS 30.0%
CAAATTGGAAAATGTCCTTA+CGG - chr1_2:58268402-58268421 Msa0080060:CDS 30.0%
TTATACTTCCAACGTGTTTA+AGG - chr1_2:58268427-58268446 Msa0080060:CDS 30.0%
! ATATATTGTTGTTCTTGCTC+AGG + chr1_2:58268585-58268604 None:intergenic 30.0%
TAATTTGAACACATCACCTA+TGG + chr1_2:58268718-58268737 None:intergenic 30.0%
!! ATTGTTGGGTTAGTTTAGTT+TGG - chr1_2:58268737-58268756 Msa0080060:five_prime_UTR 30.0%
! GTTTAATGGTCACTTTCTTT+AGG - chr1_2:58268799-58268818 Msa0080060:five_prime_UTR 30.0%
!! CACTTTCTTTAGGATGAAAT+TGG - chr1_2:58268809-58268828 Msa0080060:five_prime_UTR 30.0%
!! TTCTTTAGGATGAAATTGGA+AGG - chr1_2:58268813-58268832 Msa0080060:five_prime_UTR 30.0%
AGTGAATGAAAATGAGACGT+AGG + chr1_2:58262439-58262458 None:intergenic 35.0%
TGCTACTAGCTAGTAATCAA+AGG - chr1_2:58262606-58262625 Msa0080060:intron 35.0%
AACAAGTGAGGAATGGAAAA+AGG + chr1_2:58262743-58262762 None:intergenic 35.0%
! TGAGTATGGATTATTCAGCA+TGG - chr1_2:58262955-58262974 Msa0080060:intron 35.0%
TGGATTATTCAGCATGGTAT+TGG - chr1_2:58262961-58262980 Msa0080060:intron 35.0%
TTACCAATGTCTCGAATTGA+AGG - chr1_2:58263236-58263255 Msa0080060:intron 35.0%
AAACAACTTGAAATCCAGTC+GGG + chr1_2:58263265-58263284 None:intergenic 35.0%
CAAACAACTTGAAATCCAGT+CGG + chr1_2:58263266-58263285 None:intergenic 35.0%
GATCTCCAAAGAGAGAAAAA+TGG + chr1_2:58263435-58263454 None:intergenic 35.0%
! TGTTTTCTCATATTGCTTGG+GGG - chr1_2:58263480-58263499 Msa0080060:intron 35.0%
GTGTAATGAAAGAGCTGAAA+AGG - chr1_2:58263681-58263700 Msa0080060:CDS 35.0%
! GAAAAGGAAGTTGTTTCAAG+AGG - chr1_2:58263697-58263716 Msa0080060:CDS 35.0%
! CTTGGTCATTTCATTTGTTG+TGG - chr1_2:58263933-58263952 Msa0080060:intron 35.0%
TGTGGTTTACAACAAATGGA+TGG - chr1_2:58263951-58263970 Msa0080060:intron 35.0%
TGAGTTGTCGTTCTGATATA+AGG - chr1_2:58264043-58264062 Msa0080060:intron 35.0%
! AACTGTTGTTGGGAGTATAA+AGG - chr1_2:58264113-58264132 Msa0080060:CDS 35.0%
! TGGGAGTATAAAGGTCATTT+CGG - chr1_2:58264122-58264141 Msa0080060:CDS 35.0%
GACTTCCAAAATTTCTCTAG+GGG + chr1_2:58264151-58264170 None:intergenic 35.0%
GCAGAACCATATATGTTACA+TGG - chr1_2:58264637-58264656 Msa0080060:intron 35.0%
ATATATGCAACAAACCAAGG+GGG + chr1_2:58264747-58264766 None:intergenic 35.0%
!!! AATGGTGTGTTATTTTCTCC+AGG - chr1_2:58264842-58264861 Msa0080060:intron 35.0%
TTGAAAAGACAAAGGAGAGA+GGG + chr1_2:58265415-58265434 None:intergenic 35.0%
ATTGAAAAGACAAAGGAGAG+AGG + chr1_2:58265416-58265435 None:intergenic 35.0%
GTAAATAGTGTAATGAGGGA+AGG + chr1_2:58265572-58265591 None:intergenic 35.0%
TAACATACATTGCATGTGCA+TGG + chr1_2:58265630-58265649 None:intergenic 35.0%
!! ATGCTTTCAGGAAGTATCTT+TGG - chr1_2:58265701-58265720 Msa0080060:intron 35.0%
TTCAGTGCTTGAATAATGTC+CGG + chr1_2:58265777-58265796 None:intergenic 35.0%
!! CATTATTCAAGCACTGAAAG+AGG - chr1_2:58265779-58265798 Msa0080060:CDS 35.0%
ATCAATCAATGGAGTGATCA+AGG + chr1_2:58266399-58266418 None:intergenic 35.0%
GCTTGACTACAATCAATCAA+TGG + chr1_2:58266410-58266429 None:intergenic 35.0%
GAGGATACCAAATAAAGGAT+GGG + chr1_2:58266530-58266549 None:intergenic 35.0%
AGAGGATACCAAATAAAGGA+TGG + chr1_2:58266531-58266550 None:intergenic 35.0%
GAGGAAAGGAAAATAAAGAG+AGG + chr1_2:58266549-58266568 None:intergenic 35.0%
! GGTGTTAATAGAGATTAGCT+TGG + chr1_2:58266886-58266905 None:intergenic 35.0%
CTAACATGCTTAATTTCAGC+CGG - chr1_2:58266964-58266983 Msa0080060:intron 35.0%
AAGTCCTTCATCAGTAAAAG+TGG + chr1_2:58267002-58267021 None:intergenic 35.0%
AGAAACATACTTTAGCAGCA+TGG - chr1_2:58267023-58267042 Msa0080060:intron 35.0%
GAGAGAAAATTACAGCAATG+TGG - chr1_2:58267049-58267068 Msa0080060:intron 35.0%
CAATGTGGAACTGATAGTAA+TGG - chr1_2:58267064-58267083 Msa0080060:intron 35.0%
CTTACATCAACAAAACTCCA+AGG + chr1_2:58267100-58267119 None:intergenic 35.0%
ATGTCTTCTAGTCTCTCAAA+AGG + chr1_2:58267252-58267271 None:intergenic 35.0%
GAATGCATAATAGCAACTAC+TGG + chr1_2:58267303-58267322 None:intergenic 35.0%
TATTATGCATTCTTCTTCCG+AGG - chr1_2:58267311-58267330 Msa0080060:intron 35.0%
AAGCGTTTCAAGAACGATTA+TGG - chr1_2:58267464-58267483 Msa0080060:intron 35.0%
TTCAATACGTTTGGGTAGAT+GGG - chr1_2:58267517-58267536 Msa0080060:intron 35.0%
AGTTAGCTCAATACCAATTG+TGG - chr1_2:58267791-58267810 Msa0080060:intron 35.0%
ATACCAATTGTGGATGATTC+TGG - chr1_2:58267801-58267820 Msa0080060:intron 35.0%
CTAGATGTGAAATGTATGCT+AGG - chr1_2:58267951-58267970 Msa0080060:intron 35.0%
ATTAGCATTGTTAGGCCTTA+CGG + chr1_2:58268281-58268300 None:intergenic 35.0%
!! TGGGTTAGTTTAGTTTGGAA+TGG - chr1_2:58268742-58268761 Msa0080060:five_prime_UTR 35.0%
!! GGGTTAGTTTAGTTTGGAAT+GGG - chr1_2:58268743-58268762 Msa0080060:five_prime_UTR 35.0%
!! TTAGTTTAGTTTGGAATGGG+AGG - chr1_2:58268746-58268765 Msa0080060:five_prime_UTR 35.0%
! TTTAGGATGAAATTGGAAGG+AGG - chr1_2:58268816-58268835 Msa0080060:five_prime_UTR 35.0%
TTAGGATGAAATTGGAAGGA+GGG - chr1_2:58268817-58268836 Msa0080060:five_prime_UTR 35.0%
CAGTAGCATGCATCCATATA+CGG - chr1_2:58262334-58262353 Msa0080060:three_prime_UTR 40.0%
!! GAAAAGCGCTTAACCGTATA+TGG + chr1_2:58262350-58262369 None:intergenic 40.0%
TTGCATTGTGAACTGTGCTA+TGG + chr1_2:58262486-58262505 None:intergenic 40.0%
ATGGAAAAAGGTTGAGGATC+AGG + chr1_2:58262731-58262750 None:intergenic 40.0%
TGAGGAATGGAAAAAGGTTG+AGG + chr1_2:58262737-58262756 None:intergenic 40.0%
CCAAACAAACAAGTGAGGAA+TGG + chr1_2:58262750-58262769 None:intergenic 40.0%
CCATTCCTCACTTGTTTGTT+TGG - chr1_2:58262747-58262766 Msa0080060:CDS 40.0%
TTTCTATGCGGTTCTTTCAC+TGG - chr1_2:58262791-58262810 Msa0080060:intron 40.0%
TTCTATGCGGTTCTTTCACT+GGG - chr1_2:58262792-58262811 Msa0080060:intron 40.0%
!!! GCTGTCACTTTGTTTCCTTT+TGG - chr1_2:58262998-58263017 Msa0080060:intron 40.0%
CTTGACTCCAGGATTTCATA+CGG - chr1_2:58263289-58263308 Msa0080060:intron 40.0%
CCAAATACCGTATGAAATCC+TGG + chr1_2:58263299-58263318 None:intergenic 40.0%
CCAGGATTTCATACGGTATT+TGG - chr1_2:58263296-58263315 Msa0080060:intron 40.0%
! TCTCTCTTTGGAGATCATAG+AGG - chr1_2:58263439-58263458 Msa0080060:intron 40.0%
! CTCTCTTTGGAGATCATAGA+GGG - chr1_2:58263440-58263459 Msa0080060:intron 40.0%
! TCTCTTTGGAGATCATAGAG+GGG - chr1_2:58263441-58263460 Msa0080060:intron 40.0%
GAAGAGGAAAGAAAGGGTAA+AGG - chr1_2:58263502-58263521 Msa0080060:intron 40.0%
! CTTGCTGTCCTGCTTTATAT+TGG - chr1_2:58263736-58263755 Msa0080060:intron 40.0%
TGTCCTGCTTTATATTGGCA+GGG - chr1_2:58263741-58263760 Msa0080060:intron 40.0%
GGTTTACAACAAATGGATGG+AGG - chr1_2:58263954-58263973 Msa0080060:intron 40.0%
TACAACAAATGGATGGAGGT+TGG - chr1_2:58263958-58263977 Msa0080060:intron 40.0%
!! TTGGACGGAGATTGGTTTAT+AGG - chr1_2:58263982-58264001 Msa0080060:intron 40.0%
!! TGGACGGAGATTGGTTTATA+GGG - chr1_2:58263983-58264002 Msa0080060:intron 40.0%
GGTTTATAGGGAGGAAAGTT+TGG - chr1_2:58263995-58264014 Msa0080060:intron 40.0%
GCAGACAGTTAACTGTTGTT+GGG - chr1_2:58264103-58264122 Msa0080060:CDS 40.0%
! GGGAGTATAAAGGTCATTTC+GGG - chr1_2:58264123-58264142 Msa0080060:CDS 40.0%
!! TGTGCAGTATCAGTTTTGTG+TGG - chr1_2:58264540-58264559 Msa0080060:intron 40.0%
!! CAGTATCAGTTTTGTGTGGA+TGG - chr1_2:58264544-58264563 Msa0080060:intron 40.0%
GAGCAGCAGCCATTTATAAA+CGG - chr1_2:58264583-58264602 Msa0080060:intron 40.0%
AGCAGCAGCCATTTATAAAC+GGG - chr1_2:58264584-58264603 Msa0080060:intron 40.0%
GGCATCCCATGTAACATATA+TGG + chr1_2:58264646-58264665 None:intergenic 40.0%
! TTAACCTTGGAGCTTTTCCA+GGG - chr1_2:58265274-58265293 Msa0080060:intron 40.0%
! TTTTCCAGGGAGTTTTTCCT+AGG - chr1_2:58265287-58265306 Msa0080060:intron 40.0%
TACTGCTTCTCATTTGCTTC+CGG - chr1_2:58265369-58265388 Msa0080060:intron 40.0%
TGAAAAGACAAAGGAGAGAG+GGG + chr1_2:58265414-58265433 None:intergenic 40.0%
! TCTAGGAAGTGCAAGTTTGT+TGG - chr1_2:58265738-58265757 Msa0080060:intron 40.0%
GGTTGTACCCATCCTTTATT+TGG - chr1_2:58266520-58266539 Msa0080060:CDS 40.0%
CAAGAACCTACAATGAGGAA+AGG + chr1_2:58266563-58266582 None:intergenic 40.0%
TGATGCAAGAACCTACAATG+AGG + chr1_2:58266568-58266587 None:intergenic 40.0%
ACAAACCATGGCATTTGTGA+AGG + chr1_2:58266741-58266760 None:intergenic 40.0%
TCCAGTGACAAAACAAACCA+TGG + chr1_2:58266753-58266772 None:intergenic 40.0%
!! CGATCCACTTTTACTGATGA+AGG - chr1_2:58266995-58267014 Msa0080060:intron 40.0%
! GTAATGGGAAAGCATATCCT+TGG - chr1_2:58267080-58267099 Msa0080060:intron 40.0%
GGCTATGCGTATAAATGGTT+TGG - chr1_2:58267407-58267426 Msa0080060:intron 40.0%
GAACGATTATGGTTCTTTGC+CGG - chr1_2:58267475-58267494 Msa0080060:intron 40.0%
CCAATCGGTATTTGAAGAAC+CGG + chr1_2:58267497-58267516 None:intergenic 40.0%
! ACCGATTGGTTCAATACGTT+TGG - chr1_2:58267508-58267527 Msa0080060:intron 40.0%
CCCAAACGTATTGAACCAAT+CGG + chr1_2:58267512-58267531 None:intergenic 40.0%
! CCGATTGGTTCAATACGTTT+GGG - chr1_2:58267509-58267528 Msa0080060:intron 40.0%
GTTCAATACGTTTGGGTAGA+TGG - chr1_2:58267516-58267535 Msa0080060:intron 40.0%
! TTATTGGATTCCCCCACTTT+TGG + chr1_2:58267545-58267564 None:intergenic 40.0%
CGTTGCAATTGGCTGTTTAT+TGG + chr1_2:58267561-58267580 None:intergenic 40.0%
GCTATCGCTCTAATGAATCA+AGG - chr1_2:58267608-58267627 Msa0080060:intron 40.0%
GAACCAGAATCATCCACAAT+TGG + chr1_2:58267807-58267826 None:intergenic 40.0%
TCACAGTGATCTTACTGCAT+TGG - chr1_2:58267928-58267947 Msa0080060:CDS 40.0%
AATGTATGCTAGGATAAGCC+TGG - chr1_2:58267961-58267980 Msa0080060:intron 40.0%
!!! ATGAAGTTTTTTTGTGCCGC+AGG - chr1_2:58268365-58268384 Msa0080060:intron 40.0%
TGTCTCAAATTCAATGCCTG+CGG + chr1_2:58268384-58268403 None:intergenic 40.0%
! GTTGGAAGTATAAGTCCGTA+AGG + chr1_2:58268420-58268439 None:intergenic 40.0%
ATGGAACGCTTTGCTAATTC+TGG - chr1_2:58268471-58268490 Msa0080060:CDS 40.0%
TGTTGTTCTTGCTCAGGTAA+AGG + chr1_2:58268579-58268598 None:intergenic 40.0%
! GAATGGGAGGAAAACTGTTT+TGG - chr1_2:58268759-58268778 Msa0080060:five_prime_UTR 40.0%
AAAGGTTGAGGATCAGGTAC+TGG + chr1_2:58262725-58262744 None:intergenic 45.0%
TGAGGCCAAACAAACAAGTG+AGG + chr1_2:58262755-58262774 None:intergenic 45.0%
CACTTGTTTGTTTGGCCTCA+TGG - chr1_2:58262755-58262774 Msa0080060:CDS 45.0%
TTGTTTGTTTGGCCTCATGG+AGG - chr1_2:58262758-58262777 Msa0080060:CDS 45.0%
GAAAGAACCGCATAGAAACG+CGG + chr1_2:58262789-58262808 None:intergenic 45.0%
! GTTGTTTGCTACTTGACTCC+AGG - chr1_2:58263278-58263297 Msa0080060:intron 45.0%
TTTGGAGATCATAGAGGGGA+TGG - chr1_2:58263445-58263464 Msa0080060:intron 45.0%
TTGGAGATCATAGAGGGGAT+GGG - chr1_2:58263446-58263465 Msa0080060:intron 45.0%
TTGGGGGAAGAGGAAAGAAA+GGG - chr1_2:58263496-58263515 Msa0080060:intron 45.0%
CTGTCCTGCTTTATATTGGC+AGG - chr1_2:58263740-58263759 Msa0080060:intron 45.0%
CTTTATATTGGCAGGGCAGT+AGG - chr1_2:58263748-58263767 Msa0080060:intron 45.0%
! CAAATGGATGGAGGTTGGTT+TGG - chr1_2:58263963-58263982 Msa0080060:intron 45.0%
!! ACGGAGATTGGTTTATAGGG+AGG - chr1_2:58263986-58264005 Msa0080060:intron 45.0%
! CTTAAGTGCCACTAGTGTGA+CGG - chr1_2:58264081-58264100 Msa0080060:CDS 45.0%
GGCAGACAGTTAACTGTTGT+TGG - chr1_2:58264102-58264121 Msa0080060:CDS 45.0%
! GGGATCCCCTAGAGAAATTT+TGG - chr1_2:58264143-58264162 Msa0080060:CDS 45.0%
!! AGTTTTGTGTGGATGGTGTG+TGG - chr1_2:58264551-58264570 Msa0080060:intron 45.0%
GCGGTGAACCCGTTTATAAA+TGG + chr1_2:58264595-58264614 None:intergenic 45.0%
CGAAATAGTGTTCACTGTGG+CGG + chr1_2:58264614-58264633 None:intergenic 45.0%
CGCCACAGTGAACACTATTT+CGG - chr1_2:58264612-58264631 Msa0080060:intron 45.0%
CACCGAAATAGTGTTCACTG+TGG + chr1_2:58264617-58264636 None:intergenic 45.0%
CACAGTGAACACTATTTCGG+TGG - chr1_2:58264615-58264634 Msa0080060:intron 45.0%
ATGCATGCACATATGCTACC+TGG + chr1_2:58264863-58264882 None:intergenic 45.0%
! CTTAACCTTGGAGCTTTTCC+AGG - chr1_2:58265273-58265292 Msa0080060:intron 45.0%
TATCAAACCTTGCCAGACTC+CGG + chr1_2:58265391-58265410 None:intergenic 45.0%
! AAGTATCTTTGGCTCCTGTG+TGG - chr1_2:58265712-58265731 Msa0080060:intron 45.0%
! AGTATCTTTGGCTCCTGTGT+GGG - chr1_2:58265713-58265732 Msa0080060:intron 45.0%
GAGTGATCAAGGATCTACTC+AGG + chr1_2:58266388-58266407 None:intergenic 45.0%
!!! GCCATGGTTTGTTTTGTCAC+TGG - chr1_2:58266749-58266768 Msa0080060:intron 45.0%
AAAGTGGATCGATGACTCTC+CGG + chr1_2:58266986-58267005 None:intergenic 45.0%
ATGCATTCTTCTTCCGAGGA+CGG - chr1_2:58267315-58267334 Msa0080060:intron 45.0%
GAAGTCATATGTAGCAGCTG+AGG + chr1_2:58267348-58267367 None:intergenic 45.0%
CCGGTTCTTCAAATACCGAT+TGG - chr1_2:58267494-58267513 Msa0080060:intron 45.0%
AACAGCCAATTGCAACGCTA+AGG - chr1_2:58267564-58267583 Msa0080060:intron 45.0%
!! TTTGGCCTTAGCGTTGCAAT+TGG + chr1_2:58267572-58267591 None:intergenic 45.0%
!! GCAGCACTAAGAGAAGCATT+TGG + chr1_2:58267590-58267609 None:intergenic 45.0%
TAGCTGTTCTTAGCACAAGG+AGG + chr1_2:58267871-58267890 None:intergenic 45.0%
GTCTAGCTGTTCTTAGCACA+AGG + chr1_2:58267874-58267893 None:intergenic 45.0%
CATCACCACATGCAATGGAT+CGG + chr1_2:58268454-58268473 None:intergenic 45.0%
!! TACAGGTGTTGGAGAAGTTG+TGG - chr1_2:58268653-58268672 Msa0080060:five_prime_UTR 45.0%
GTGCAAGGGATCATTTCCAT+AGG - chr1_2:58268699-58268718 Msa0080060:five_prime_UTR 45.0%
!!! TAACATTTTAAAAAATTAAT+CGG - chr1_2:58265001-58265020 Msa0080060:intron 5.0%
ATGTCAGGTTCATCAGCTGC+AGG - chr1_2:58262668-58262687 Msa0080060:intron 50.0%
GGTGAAACCGCGTTTCTATG+CGG - chr1_2:58262779-58262798 Msa0080060:intron 50.0%
CGGCCTTCAATTCGAGACAT+TGG + chr1_2:58263242-58263261 None:intergenic 50.0%
CAACTTGAAATCCAGTCGGG+CGG + chr1_2:58263262-58263281 None:intergenic 50.0%
CTCATATTGCTTGGGGGAAG+AGG - chr1_2:58263486-58263505 Msa0080060:intron 50.0%
CTTGGGGGAAGAGGAAAGAA+AGG - chr1_2:58263495-58263514 Msa0080060:intron 50.0%
CTGCCCTGCCAATATAAAGC+AGG + chr1_2:58263747-58263766 None:intergenic 50.0%
!! TGGATGGAGGTTGGTTTGGA+CGG - chr1_2:58263967-58263986 Msa0080060:intron 50.0%
!! AGGTTGGTTTGGACGGAGAT+TGG - chr1_2:58263974-58263993 Msa0080060:intron 50.0%
TTTGTGTGGATGGTGTGTGG+CGG - chr1_2:58264554-58264573 Msa0080060:intron 50.0%
AGCTGCAGATGGGATCTACT+AGG + chr1_2:58264667-58264686 None:intergenic 50.0%
! CAAACCAAGGGGGCATAGAT+GGG + chr1_2:58264737-58264756 None:intergenic 50.0%
! ACAAACCAAGGGGGCATAGA+TGG + chr1_2:58264738-58264757 None:intergenic 50.0%
AACTCCCTGGAAAAGCTCCA+AGG + chr1_2:58265281-58265300 None:intergenic 50.0%
GTGTCCTAGGAAAAACTCCC+TGG + chr1_2:58265294-58265313 None:intergenic 50.0%
AGAGCAAACTCTGGTGTCCT+AGG + chr1_2:58265307-58265326 None:intergenic 50.0%
GAGACATGCAGAGCAAACTC+TGG + chr1_2:58265316-58265335 None:intergenic 50.0%
TCTCATTTGCTTCCGGAGTC+TGG - chr1_2:58265376-58265395 Msa0080060:intron 50.0%
CACTTCCTAGAATCCCACAC+AGG + chr1_2:58265729-58265748 None:intergenic 50.0%
! TGTTGGAGTGCTTAGTGCAC+CGG - chr1_2:58265755-58265774 Msa0080060:intron 50.0%
ACCAGAAACACCATCAGCAG+AGG + chr1_2:58266718-58266737 None:intergenic 50.0%
CTGGTCCTTCACAAATGCCA+TGG - chr1_2:58266733-58266752 Msa0080060:intron 50.0%
!! AGCATCGGGTGCAGGTTTTA+TGG + chr1_2:58266785-58266804 None:intergenic 50.0%
! AGAGATTTAGCATCGGGTGC+AGG + chr1_2:58266793-58266812 None:intergenic 50.0%
GGATCGGACCTTAAACACGT+TGG + chr1_2:58268438-58268457 None:intergenic 50.0%
AAGGTCCGATCCATTGCATG+TGG - chr1_2:58268446-58268465 Msa0080060:CDS 50.0%
CGATCCATTGCATGTGGTGA+TGG - chr1_2:58268452-58268471 Msa0080060:CDS 50.0%
CGTTCCATCACCACATGCAA+TGG + chr1_2:58268459-58268478 None:intergenic 50.0%
!! AGGTGTTGGAGAAGTTGTGG+TGG - chr1_2:58268656-58268675 Msa0080060:five_prime_UTR 50.0%
GGTTCATCAGCTGCAGGTAG+AGG - chr1_2:58262674-58262693 Msa0080060:intron 55.0%
TCATCAGCTGCAGGTAGAGG+AGG - chr1_2:58262677-58262696 Msa0080060:intron 55.0%
GCTGCAGGTAGAGGAGGAAA+TGG - chr1_2:58262683-58262702 Msa0080060:intron 55.0%
AACGCGGTTTCACCTCCATG+AGG + chr1_2:58262773-58262792 None:intergenic 55.0%
ACTGTCTGCCGTCACACTAG+TGG + chr1_2:58264092-58264111 None:intergenic 55.0%
ACTTCCCATCTATGCCCCCT+TGG - chr1_2:58264730-58264749 Msa0080060:intron 55.0%
TTTGCTTCCGGAGTCTGGCA+AGG - chr1_2:58265381-58265400 Msa0080060:CDS 55.0%
TGGCTCCTGTGTGGGATTCT+AGG - chr1_2:58265721-58265740 Msa0080060:intron 55.0%
!! CCATCAGCAGAGGCACCATT+GGG + chr1_2:58266708-58266727 None:intergenic 55.0%
!! ACCATCAGCAGAGGCACCAT+TGG + chr1_2:58266709-58266728 None:intergenic 55.0%
! GCCTCTGCTGATGGTGTTTC+TGG - chr1_2:58266714-58266733 Msa0080060:intron 55.0%
GGTAGATGGGCGCCAAAAGT+GGG - chr1_2:58267530-58267549 Msa0080060:intron 55.0%
GTAGATGGGCGCCAAAAGTG+GGG - chr1_2:58267531-58267550 Msa0080060:intron 55.0%
TAGATGGGCGCCAAAAGTGG+GGG - chr1_2:58267532-58267551 Msa0080060:intron 55.0%
CCCAATGGTGCCTCTGCTGA+TGG - chr1_2:58266705-58266724 Msa0080060:intron 60.0%
CTGAGGAGTTGAGCCGTCCT+CGG + chr1_2:58267331-58267350 None:intergenic 60.0%
GGGTAGATGGGCGCCAAAAG+TGG - chr1_2:58267529-58267548 Msa0080060:intron 60.0%
! TGGTGGTGAAGTCTGCCTGC+AGG - chr1_2:58268673-58268692 Msa0080060:five_prime_UTR 60.0%
! TCTGCCTGCAGGAGTGTGCA+AGG - chr1_2:58268684-58268703 Msa0080060:five_prime_UTR 60.0%
! CTGCCTGCAGGAGTGTGCAA+GGG - chr1_2:58268685-58268704 Msa0080060:five_prime_UTR 60.0%
GATCCCTTGCACACTCCTGC+AGG + chr1_2:58268691-58268710 None:intergenic 60.0%
CGAATTGAAGGCCGCCCGAC+TGG - chr1_2:58263248-58263267 Msa0080060:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 58262257 58268923 58262257 ID=Msa0080060;Name=Msa0080060
chr1_2 mRNA 58262257 58268923 58262257 ID=Msa0080060-mRNA-1;Parent=Msa0080060;Name=Msa0080060-mRNA-1;_AED=0.12;_eAED=0.12;_QI=411|1|1|1|1|1|13|174|480
chr1_2 exon 58262257 58262522 58262257 ID=Msa0080060-mRNA-1:exon:18630;Parent=Msa0080060-mRNA-1
chr1_2 exon 58262688 58262793 58262688 ID=Msa0080060-mRNA-1:exon:18629;Parent=Msa0080060-mRNA-1
chr1_2 exon 58263177 58263246 58263177 ID=Msa0080060-mRNA-1:exon:18628;Parent=Msa0080060-mRNA-1
chr1_2 exon 58263330 58263393 58263330 ID=Msa0080060-mRNA-1:exon:18627;Parent=Msa0080060-mRNA-1
chr1_2 exon 58263551 58263724 58263551 ID=Msa0080060-mRNA-1:exon:18626;Parent=Msa0080060-mRNA-1
chr1_2 exon 58263793 58263937 58263793 ID=Msa0080060-mRNA-1:exon:18625;Parent=Msa0080060-mRNA-1
chr1_2 exon 58264066 58264197 58264066 ID=Msa0080060-mRNA-1:exon:18624;Parent=Msa0080060-mRNA-1
chr1_2 exon 58265380 58265469 58265380 ID=Msa0080060-mRNA-1:exon:18623;Parent=Msa0080060-mRNA-1
chr1_2 exon 58265622 58265681 58265622 ID=Msa0080060-mRNA-1:exon:18622;Parent=Msa0080060-mRNA-1
chr1_2 exon 58265778 58265885 58265778 ID=Msa0080060-mRNA-1:exon:18621;Parent=Msa0080060-mRNA-1
chr1_2 exon 58266466 58266633 58266466 ID=Msa0080060-mRNA-1:exon:18620;Parent=Msa0080060-mRNA-1
chr1_2 exon 58267870 58267957 58267870 ID=Msa0080060-mRNA-1:exon:18619;Parent=Msa0080060-mRNA-1
chr1_2 exon 58268367 58268923 58268367 ID=Msa0080060-mRNA-1:exon:18618;Parent=Msa0080060-mRNA-1
chr1_2 five_prime_UTR 58268513 58268923 58268513 ID=Msa0080060-mRNA-1:five_prime_utr;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58268367 58268512 58268367 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58267870 58267957 58267870 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58266466 58266633 58266466 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58265778 58265885 58265778 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58265622 58265681 58265622 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58265380 58265469 58265380 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58264066 58264197 58264066 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58263793 58263937 58263793 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58263551 58263724 58263551 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58263330 58263393 58263330 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58263177 58263246 58263177 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58262688 58262793 58262688 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 CDS 58262431 58262522 58262431 ID=Msa0080060-mRNA-1:cds;Parent=Msa0080060-mRNA-1
chr1_2 three_prime_UTR 58262257 58262430 58262257 ID=Msa0080060-mRNA-1:three_prime_utr;Parent=Msa0080060-mRNA-1
Gene Sequence

>Msa0080060

ATGTCAGGTTCATCAGCTGCAGGTAGAGGAGGAAATGGAAGTAGTAGTGATGTACCAGTACCTGATCCTCAACCTTTTTCCATTCCTCACTTGTTTGTTTGGCCTCATGGAGGTGAAACCGCGTTTCTATGCGGTTCTTTCACTGGATGGTCAACAAATTTACCAATGTCTCGAATTGAAGGCCGCCCGACTGGATTTCAAGTTGTTTGCTACTTGACTCCAGGATTTCATACGTATCAGTTTTGTGTGGATGGTGTGTGGCGGCATGATGAGCAGCAGCCATTTATAAACGGGTTCACCGCCACAGTGAACACTATTTCGGTGGCAGAACCATATATGTTACATGGGATGCCTAGTAGATCCCATCTGCAGCTTGAAAATATTAATGTCACTAGACACATGGGAGTTTTTCCTAGGACACCAGAGTTTGCTCTGCATGTCTCGCGCTATCACATATATAAATTTATGTCATCGAATACTGCTTCTCATTTGCTTCCGGAGTCTGGCAAGGTATTTGTCTTGAATATAGATTTATCACTTCAGCAAGCATTGCATATTCTATATGAACAGGAAGTATCTTTGGCTCCTGTGTGGGATTCTAGGAAGTGCAAGTTTGTTGGAGTGCTTAGTGCACCGGACATTATTCAAGCACTGAAAGAGCCGGAGAGTCATCGATCCACTTTTACTGATGAAGGACTTGAGAAACATACTTTAGCAGCATGGATAGAGAGAAAATTACAGCAATGTGGAACTGATAGTAATGGGAAAGCATATCCTTGGAGTTTTGTTGATGCTAGGCCTTTTGAGAGACTAGAAGACATCGCTTTAAAATTTTTGCAATGCAAGGTGCCAGTAGTTGCTATTATGCATTCTTCTTCCGAGGACGGCTCAACTCCTCAGCTGCTACATATGACTTCTCGCTCCGAAATACTAAAATGTATATGCAAGCGTTTCAAGAACGATTATGGTTCTTTGCCGGTTCTTCAAATACCGATTGGTTCAATACGTTTGGGTAGATGGGCGCCAAAAGTGGGGGAATCCAATAAACAGCCAATTGCAACGCTAAGGCCAAATGCTTCTCTTAGTGCTGCTATCGCTCTAATGAATCAAGCTGAAGTTAGCTCAATACCAATTGTGGATGATTCTGGTTCATTATATGATGTATATTCAAGAAGTGATCTTACTGCATTGGCTAGATGTGAAATGTATGCTAGGATAAGCCTGGATAATTTTAGTATCTCTCAGGCATTGAATTTGAGACAAATTGGAAAATGTCCTTACGGACTTATACTTCCAACGTGTTTAAGGTCCGATCCATTGCATGTGGTGATGGAACGCTTTGCTAATTCTGGTGTTGGAGAAGTTGTGGTGGTGAAGTCTGCCTGCAGGAGTGTGCAAGGGATCATTTCCATAGGTGATGTGTTCAAATTATTGTTGGGTTAG

Protein sequence

>Msa0080060

MSGSSAAGRGGNGSSSDVPVPDPQPFSIPHLFVWPHGGETAFLCGSFTGWSTNLPMSRIEGRPTGFQVVCYLTPGFHTYQFCVDGVWRHDEQQPFINGFTATVNTISVAEPYMLHGMPSRSHLQLENINVTRHMGVFPRTPEFALHVSRYHIYKFMSSNTASHLLPESGKVFVLNIDLSLQQALHILYEQEVSLAPVWDSRKCKFVGVLSAPDIIQALKEPESHRSTFTDEGLEKHTLAAWIERKLQQCGTDSNGKAYPWSFVDARPFERLEDIALKFLQCKVPVVAIMHSSSEDGSTPQLLHMTSRSEILKCICKRFKNDYGSLPVLQIPIGSIRLGRWAPKVGESNKQPIATLRPNASLSAAIALMNQAEVSSIPIVDDSGSLYDVYSRSDLTALARCEMYARISLDNFSISQALNLRQIGKCPYGLILPTCLRSDPLHVVMERFANSGVGEVVVVKSACRSVQGIISIGDVFKLLLG*