Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214710 | AES66607.1 | 98.305 | 59 | 1 | 0 | 1 | 59 | 1 | 59 | 7.76e-34 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214710 | G7ITI9 | 98.305 | 59 | 1 | 0 | 1 | 59 | 1 | 59 | 3.71e-34 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa0214710 | 0.813791 | 2.140816e-51 | -8.615850e-47 |
| Msa0010490 | Msa0214710 | 0.808018 | 3.806161e-50 | -8.615850e-47 |
| Msa0010500 | Msa0214710 | 0.807122 | 5.898457e-50 | -8.615850e-47 |
| Msa0029260 | Msa0214710 | 0.808096 | 3.663211e-50 | -8.615850e-47 |
| Msa0032260 | Msa0214710 | 0.845359 | 4.265209e-59 | -8.615850e-47 |
| Msa0032580 | Msa0214710 | 0.810847 | 9.403199e-51 | -8.615850e-47 |
| Msa0033110 | Msa0214710 | 0.805051 | 1.608641e-49 | -8.615850e-47 |
| Msa0033260 | Msa0214710 | 0.801078 | 1.067076e-48 | -8.615850e-47 |
| Msa0040690 | Msa0214710 | 0.814285 | 1.665459e-51 | -8.615850e-47 |
| Msa0042280 | Msa0214710 | 0.813145 | 2.968794e-51 | -8.615850e-47 |
| Msa0043660 | Msa0214710 | 0.828887 | 7.002840e-55 | -8.615850e-47 |
| Msa0047160 | Msa0214710 | 0.847448 | 1.149146e-59 | -8.615850e-47 |
| Msa0054750 | Msa0214710 | 0.801834 | 7.466908e-49 | -8.615850e-47 |
| Msa0056030 | Msa0214710 | 0.826742 | 2.295829e-54 | -8.615850e-47 |
| Msa0057140 | Msa0214710 | 0.818100 | 2.337188e-52 | -8.615850e-47 |
| Msa0073480 | Msa0214710 | 0.819540 | 1.100556e-52 | -8.615850e-47 |
| Msa0076000 | Msa0214710 | 0.824877 | 6.361037e-54 | -8.615850e-47 |
| Msa0076780 | Msa0214710 | 0.800473 | 1.417506e-48 | -8.615850e-47 |
| Msa0086180 | Msa0214710 | 0.821459 | 3.992670e-53 | -8.615850e-47 |
| Msa0091410 | Msa0214710 | 0.804121 | 2.514635e-49 | -8.615850e-47 |
| Msa0091570 | Msa0214710 | 0.810888 | 9.211018e-51 | -8.615850e-47 |
| Msa0094470 | Msa0214710 | 0.839232 | 1.792213e-57 | -8.615850e-47 |
| Msa0094920 | Msa0214710 | 0.838422 | 2.903733e-57 | -8.615850e-47 |
| Msa0097600 | Msa0214710 | 0.807795 | 4.244490e-50 | -8.615850e-47 |
| Msa0115390 | Msa0214710 | 0.808670 | 2.762559e-50 | -8.615850e-47 |
| Msa0121590 | Msa0214710 | 0.846433 | 2.179451e-59 | -8.615850e-47 |
| Msa0121820 | Msa0214710 | 0.823878 | 1.092658e-53 | -8.615850e-47 |
| Msa0127310 | Msa0214710 | 0.839635 | 1.408467e-57 | -8.615850e-47 |
| Msa0128860 | Msa0214710 | 0.803312 | 3.702338e-49 | -8.615850e-47 |
| Msa0131450 | Msa0214710 | 0.803034 | 4.225371e-49 | -8.615850e-47 |
| Msa0137550 | Msa0214710 | 0.820853 | 5.506113e-53 | -8.615850e-47 |
| Msa0141340 | Msa0214710 | 0.801880 | 7.306991e-49 | -8.615850e-47 |
| Msa0146770 | Msa0214710 | 0.803392 | 3.563719e-49 | -8.615850e-47 |
| Msa0165950 | Msa0214710 | 0.843109 | 1.715063e-58 | -8.615850e-47 |
| Msa0166750 | Msa0214710 | 0.816318 | 5.882152e-52 | -8.615850e-47 |
| Msa0167480 | Msa0214710 | 0.800110 | 1.680658e-48 | -8.615850e-47 |
| Msa0169300 | Msa0214710 | 0.806616 | 7.543631e-50 | -8.615850e-47 |
| Msa0172970 | Msa0214710 | 0.807865 | 4.101760e-50 | -8.615850e-47 |
| Msa0174730 | Msa0214710 | 0.800837 | 1.195063e-48 | -8.615850e-47 |
| Msa0180020 | Msa0214710 | 0.807894 | 4.043745e-50 | -8.615850e-47 |
| Msa0183460 | Msa0214710 | 0.823681 | 1.215064e-53 | -8.615850e-47 |
| Msa0183900 | Msa0214710 | 0.807123 | 5.894434e-50 | -8.615850e-47 |
| Msa0186770 | Msa0214710 | 0.801084 | 1.063881e-48 | -8.615850e-47 |
| Msa0187930 | Msa0214710 | 0.811213 | 7.832186e-51 | -8.615850e-47 |
| Msa0189300 | Msa0214710 | 0.820897 | 5.381238e-53 | -8.615850e-47 |
| Msa0194540 | Msa0214710 | 0.817169 | 3.791614e-52 | -8.615850e-47 |
| Msa0199690 | Msa0214710 | 0.828323 | 9.582587e-55 | -8.615850e-47 |
| Msa0214710 | Msa0226470 | 0.810862 | 9.331654e-51 | -8.615850e-47 |
| Msa0214710 | Msa0227400 | 0.843079 | 1.746505e-58 | -8.615850e-47 |
| Msa0214710 | Msa0231100 | 0.801119 | 1.046475e-48 | -8.615850e-47 |
| Msa0214710 | Msa0231660 | 0.833331 | 5.671404e-56 | -8.615850e-47 |
| Msa0214710 | Msa0236270 | 0.836722 | 7.920974e-57 | -8.615850e-47 |
| Msa0214710 | Msa0244780 | 0.811658 | 6.269770e-51 | -8.615850e-47 |
| Msa0214710 | Msa0260210 | 0.831534 | 1.580909e-55 | -8.615850e-47 |
| Msa0214710 | Msa0260240 | 0.802313 | 5.953544e-49 | -8.615850e-47 |
| Msa0214710 | Msa0262310 | 0.822308 | 2.538792e-53 | -8.615850e-47 |
| Msa0214710 | Msa0268130 | 0.809763 | 1.611227e-50 | -8.615850e-47 |
| Msa0214710 | Msa0280430 | 0.843382 | 1.450364e-58 | -8.615850e-47 |
| Msa0214710 | Msa0291520 | 0.808143 | 3.579509e-50 | -8.615850e-47 |
| Msa0214710 | Msa0298990 | 0.806241 | 9.050217e-50 | -8.615850e-47 |
| Msa0214710 | Msa0304290 | 0.832619 | 8.526389e-56 | -8.615850e-47 |
| Msa0214710 | Msa0304330 | 0.836497 | 9.041256e-57 | -8.615850e-47 |
| Msa0214710 | Msa0304590 | 0.838336 | 3.054683e-57 | -8.615850e-47 |
| Msa0214710 | Msa0304660 | 0.840013 | 1.122793e-57 | -8.615850e-47 |
| Msa0214710 | Msa0305890 | 0.835562 | 1.560908e-56 | -8.615850e-47 |
| Msa0214710 | Msa0331700 | 0.840838 | 6.830029e-58 | -8.615850e-47 |
| Msa0214710 | Msa0337650 | 0.830662 | 2.588357e-55 | -8.615850e-47 |
| Msa0214710 | Msa0340810 | 0.833588 | 4.892031e-56 | -8.615850e-47 |
| Msa0214710 | Msa0344540 | 0.804016 | 2.644453e-49 | -8.615850e-47 |
| Msa0214710 | Msa0345350 | 0.808029 | 3.784599e-50 | -8.615850e-47 |
| Msa0214710 | Msa0345390 | 0.806571 | 7.712243e-50 | -8.615850e-47 |
| Msa0214710 | Msa0355270 | 0.801298 | 9.618459e-49 | -8.615850e-47 |
| Msa0214710 | Msa0366890 | 0.815486 | 9.021670e-52 | -8.615850e-47 |
| Msa0214710 | Msa0376300 | 0.801464 | 8.895812e-49 | -8.615850e-47 |
| Msa0214710 | Msa0376690 | 0.838388 | 2.962534e-57 | -8.615850e-47 |
| Msa0214710 | Msa0385580 | 0.823867 | 1.099036e-53 | -8.615850e-47 |
| Msa0214710 | Msa0402330 | 0.800880 | 1.170970e-48 | -8.615850e-47 |
| Msa0214710 | Msa0414800 | 0.816932 | 4.284765e-52 | -8.615850e-47 |
| Msa0214710 | Msa0416400 | 0.816666 | 4.916535e-52 | -8.615850e-47 |
| Msa0214710 | Msa0419520 | 0.863978 | 1.691524e-64 | -8.615850e-47 |
| Msa0214710 | Msa0443390 | 0.806426 | 8.272349e-50 | -8.615850e-47 |
| Msa0214710 | Msa0447220 | 0.803520 | 3.351631e-49 | -8.615850e-47 |
| Msa0214710 | Msa0458060 | 0.862278 | 5.677220e-64 | -8.615850e-47 |
| Msa0214710 | Msa0465550 | 0.861500 | 9.819241e-64 | -8.615850e-47 |
| Msa0214710 | Msa0471590 | 0.832397 | 9.676422e-56 | -8.615850e-47 |
| Msa0214710 | Msa0508590 | 0.813828 | 2.100390e-51 | -8.615850e-47 |
| Msa0214710 | Msa0511490 | 0.818362 | 2.039739e-52 | -8.615850e-47 |
| Msa0214710 | Msa0526540 | 0.809543 | 1.796306e-50 | -8.615850e-47 |
| Msa0214710 | Msa0527910 | 0.805089 | 1.579781e-49 | -8.615850e-47 |
| Msa0214710 | Msa0534900 | 0.822864 | 1.885780e-53 | -8.615850e-47 |
| Msa0214710 | Msa0546360 | 0.807283 | 5.451464e-50 | -8.615850e-47 |
| Msa0214710 | Msa0550540 | 0.816555 | 5.205891e-52 | -8.615850e-47 |
| Msa0214710 | Msa0550570 | 0.824645 | 7.214230e-54 | -8.615850e-47 |
| Msa0214710 | Msa0556790 | 0.807211 | 5.646399e-50 | -8.615850e-47 |
| Msa0214710 | Msa0576940 | 0.806671 | 7.345386e-50 | -8.615850e-47 |
| Msa0214710 | Msa0600600 | 0.814196 | 1.742240e-51 | -8.615850e-47 |
| Msa0214710 | Msa0602370 | 0.807719 | 4.406253e-50 | -8.615850e-47 |
| Msa0214710 | Msa0603670 | 0.827921 | 1.197975e-54 | -8.615850e-47 |
| Msa0214710 | Msa0609000 | 0.823637 | 1.244623e-53 | -8.615850e-47 |
| Msa0214710 | Msa0610390 | 0.829684 | 4.485675e-55 | -8.615850e-47 |
| Msa0214710 | Msa0612390 | 0.803510 | 3.367813e-49 | -8.615850e-47 |
| Msa0214710 | Msa0615440 | 0.815972 | 7.030139e-52 | -8.615850e-47 |
| Msa0214710 | Msa0618930 | 0.812106 | 5.010099e-51 | -8.615850e-47 |
| Msa0214710 | Msa0631350 | 0.842165 | 3.054327e-58 | -8.615850e-47 |
| Msa0214710 | Msa0641140 | 0.815657 | 8.263708e-52 | -8.615850e-47 |
| Msa0214710 | Msa0650920 | 0.827492 | 1.518508e-54 | -8.615850e-47 |
| Msa0214710 | Msa0654870 | 0.800381 | 1.480036e-48 | -8.615850e-47 |
| Msa0214710 | Msa0669760 | 0.800923 | 1.147415e-48 | -8.615850e-47 |
| Msa0214710 | Msa0687630 | 0.813178 | 2.919520e-51 | -8.615850e-47 |
| Msa0214710 | Msa0691900 | 0.837092 | 6.374729e-57 | -8.615850e-47 |
| Msa0214710 | Msa0694840 | 0.820444 | 6.837512e-53 | -8.615850e-47 |
| Msa0214710 | Msa0698490 | 0.816588 | 5.119379e-52 | -8.615850e-47 |
| Msa0214710 | Msa0698660 | 0.818243 | 2.170489e-52 | -8.615850e-47 |
| Msa0214710 | Msa0705820 | 0.818702 | 1.707902e-52 | -8.615850e-47 |
| Msa0214710 | Msa0715650 | 0.826542 | 2.562467e-54 | -8.615850e-47 |
| Msa0214710 | Msa0719420 | 0.831704 | 1.435786e-55 | -8.615850e-47 |
| Msa0214710 | Msa0753140 | 0.813799 | 2.132169e-51 | -8.615850e-47 |
| Msa0214710 | Msa0770200 | 0.822512 | 2.276333e-53 | -8.615850e-47 |
| Msa0214710 | Msa0772480 | 0.826905 | 2.099311e-54 | -8.615850e-47 |
| Msa0214710 | Msa0774540 | 0.800811 | 1.209575e-48 | -8.615850e-47 |
| Msa0214710 | Msa0780880 | 0.807896 | 4.039713e-50 | -8.615850e-47 |
| Msa0214710 | Msa0789680 | 0.835169 | 1.962289e-56 | -8.615850e-47 |
| Msa0214710 | Msa0791820 | 0.805442 | 1.332158e-49 | -8.615850e-47 |
| Msa0214710 | Msa0793390 | 0.824303 | 8.682240e-54 | -8.615850e-47 |
| Msa0214710 | Msa0794670 | 0.808924 | 2.438095e-50 | -8.615850e-47 |
| Msa0214710 | Msa0798440 | 0.837980 | 3.773042e-57 | -8.615850e-47 |
| Msa0214710 | Msa0802410 | 0.839363 | 1.657290e-57 | -8.615850e-47 |
| Msa0214710 | Msa0805500 | 0.813947 | 1.977242e-51 | -8.615850e-47 |
| Msa0214710 | Msa0806920 | 0.839036 | 2.014079e-57 | -8.615850e-47 |
| Msa0214710 | Msa0814250 | 0.832229 | 1.064676e-55 | -8.615850e-47 |
| Msa0214710 | Msa0819060 | 0.805348 | 1.394405e-49 | -8.615850e-47 |
| Msa0214710 | Msa0830540 | 0.829703 | 4.437267e-55 | -8.615850e-47 |
| Msa0214710 | Msa0831870 | 0.802027 | 6.817380e-49 | -8.615850e-47 |
| Msa0214710 | Msa0839200 | 0.805737 | 1.155389e-49 | -8.615850e-47 |
| Msa0214710 | Msa0913240 | 0.808811 | 2.577639e-50 | -8.615850e-47 |
| Msa0214710 | Msa0926850 | 0.807116 | 5.913680e-50 | -8.615850e-47 |
| Msa0214710 | Msa0933290 | 0.802034 | 6.793013e-49 | -8.615850e-47 |
| Msa0214710 | Msa0960830 | 0.803521 | 3.350447e-49 | -8.615850e-47 |
| Msa0214710 | Msa0963020 | 0.813162 | 2.942727e-51 | -8.615850e-47 |
| Msa0214710 | Msa0970030 | 0.815677 | 8.176892e-52 | -8.615850e-47 |
| Msa0214710 | Msa0989540 | 0.824772 | 6.735257e-54 | -8.615850e-47 |
| Msa0214710 | Msa1006840 | 0.821063 | 4.926824e-53 | -8.615850e-47 |
| Msa0214710 | Msa1014420 | 0.836135 | 1.117178e-56 | -8.615850e-47 |
| Msa0214710 | Msa1019240 | 0.828834 | 7.213120e-55 | -8.615850e-47 |
| Msa0214710 | Msa1019260 | 0.818423 | 1.975761e-52 | -8.615850e-47 |
| Msa0214710 | Msa1025940 | 0.813191 | 2.900625e-51 | -8.615850e-47 |
| Msa0214710 | Msa1029970 | 0.804707 | 1.898774e-49 | -8.615850e-47 |
| Msa0214710 | Msa1041520 | 0.815332 | 9.760730e-52 | -8.615850e-47 |
| Msa0214710 | Msa1055410 | 0.819268 | 1.269675e-52 | -8.615850e-47 |
| Msa0214710 | Msa1073400 | 0.818762 | 1.654723e-52 | -8.615850e-47 |
| Msa0214710 | Msa1081150 | 0.829401 | 5.255082e-55 | -8.615850e-47 |
| Msa0214710 | Msa1081560 | 0.810539 | 1.095957e-50 | -8.615850e-47 |
| Msa0214710 | Msa1084470 | 0.825147 | 5.492296e-54 | -8.615850e-47 |
| Msa0214710 | Msa1089840 | 0.823251 | 1.531567e-53 | -8.615850e-47 |
| Msa0214710 | Msa1093330 | 0.818687 | 1.720825e-52 | -8.615850e-47 |
| Msa0214710 | Msa1104140 | 0.828385 | 9.257335e-55 | -8.615850e-47 |
| Msa0214710 | Msa1104210 | 0.824177 | 9.297823e-54 | -8.615850e-47 |
| Msa0214710 | Msa1108820 | 0.806599 | 7.606361e-50 | -8.615850e-47 |
| Msa0214710 | Msa1122820 | 0.810077 | 1.378993e-50 | -8.615850e-47 |
| Msa0214710 | Msa1125550 | 0.802814 | 4.693285e-49 | -8.615850e-47 |
| Msa0214710 | Msa1138870 | 0.803940 | 2.742771e-49 | -8.615850e-47 |
| Msa0214710 | Msa1165960 | 0.800739 | 1.251200e-48 | -8.615850e-47 |
| Msa0214710 | Msa1166410 | 0.808725 | 2.689429e-50 | -8.615850e-47 |
| Msa0214710 | Msa1166870 | 0.822165 | 2.740206e-53 | -8.615850e-47 |
| Msa0214710 | Msa1179950 | 0.853178 | 2.837575e-61 | -8.615850e-47 |
| Msa0214710 | Msa1179980 | 0.853017 | 3.155648e-61 | -8.615850e-47 |
| Msa0214710 | Msa1184370 | 0.802905 | 4.493021e-49 | -8.615850e-47 |
| Msa0214710 | Msa1209760 | 0.813429 | 2.571708e-51 | -8.615850e-47 |
| Msa0214710 | Msa1218600 | 0.802195 | 6.295522e-49 | -8.615850e-47 |
| Msa0214710 | Msa1226610 | 0.800854 | 1.185189e-48 | -8.615850e-47 |
| Msa0214710 | Msa1227690 | 0.802327 | 5.914118e-49 | -8.615850e-47 |
| Msa0214710 | Msa1237940 | 0.834591 | 2.743574e-56 | -8.615850e-47 |
| Msa0214710 | Msa1257510 | 0.809413 | 1.915716e-50 | -8.615850e-47 |
| Msa0214710 | Msa1265630 | 0.844341 | 8.026658e-59 | -8.615850e-47 |
| Msa0214710 | Msa1269300 | 0.824431 | 8.100038e-54 | -8.615850e-47 |
| Msa0214710 | Msa1270620 | 0.854410 | 1.253979e-61 | -8.615850e-47 |
| Msa0214710 | Msa1270690 | 0.853458 | 2.357569e-61 | -8.615850e-47 |
| Msa0214710 | Msa1282240 | 0.820039 | 8.467045e-53 | -8.615850e-47 |
| Msa0214710 | Msa1295110 | 0.816036 | 6.800600e-52 | -8.615850e-47 |
| Msa0214710 | Msa1299700 | 0.809088 | 2.248656e-50 | -8.615850e-47 |
| Msa0214710 | Msa1306990 | 0.839866 | 1.226448e-57 | -8.615850e-47 |
| Msa0214710 | Msa1331710 | 0.823607 | 1.264846e-53 | -8.615850e-47 |
| Msa0214710 | Msa1332220 | 0.815399 | 9.432913e-52 | -8.615850e-47 |
| Msa0214710 | Msa1355700 | 0.828716 | 7.701938e-55 | -8.615850e-47 |
| Msa0214710 | Msa1356440 | 0.820299 | 7.381357e-53 | -8.615850e-47 |
| Msa0214710 | Msa1363330 | 0.807893 | 4.046727e-50 | -8.615850e-47 |
| Msa0214710 | Msa1368060 | 0.813120 | 3.006288e-51 | -8.615850e-47 |
| Msa0214710 | Msa1371430 | 0.803299 | 3.724896e-49 | -8.615850e-47 |
| Msa0214710 | Msa1374120 | 0.805019 | 1.634008e-49 | -8.615850e-47 |
| Msa0214710 | Msa1379760 | 0.812743 | 3.635197e-51 | -8.615850e-47 |
| Msa0214710 | Msa1386600 | 0.808459 | 3.065258e-50 | -8.615850e-47 |
| Msa0214710 | Msa1388860 | 0.818762 | 1.654723e-52 | -8.615850e-47 |
| Msa0214710 | Msa1394290 | 0.842722 | 2.173276e-58 | -8.615850e-47 |
| Msa0214710 | Msa1404190 | 0.807790 | 4.255089e-50 | -8.615850e-47 |
| Msa0214710 | Msa1432700 | 0.809587 | 1.758171e-50 | -8.615850e-47 |
| Msa0214710 | Msa1433600 | 0.805647 | 1.206865e-49 | -8.615850e-47 |
| Msa0214710 | Msa1444310 | 0.825294 | 5.070202e-54 | -8.615850e-47 |
| Msa0214710 | Msa1448690 | 0.801334 | 9.458469e-49 | -8.615850e-47 |
| Msa0214710 | Msa1450280 | 0.802939 | 4.422003e-49 | -8.615850e-47 |
| Msa0214710 | Msa1457920 | 0.807347 | 5.283244e-50 | -8.615850e-47 |
| Msa0214710 | Msa1465960 | 0.804988 | 1.658252e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214710 | MtrunA17_Chr2g0315721 | 98.276 | 58 | 1 | 0 | 1 | 58 | 1 | 58 | 3.01e-37 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214710 | AT1G10865.2 | 74.576 | 59 | 15 | 0 | 1 | 59 | 1 | 59 | 2.32e-26 | 90.9 |
| Msa0214710 | AT1G10865.1 | 74.576 | 59 | 15 | 0 | 1 | 59 | 1 | 59 | 3.78e-26 | 90.9 |
Find 14 sgRNAs with CRISPR-Local
Find 17 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTGAGTGTGTTGGTCTT+AGG | 0.172998 | 2_1:+59296135 | Msa0214710:CDS |
| AGCTGAGTGTGTTGGTCTTA+GGG | 0.357346 | 2_1:+59296136 | Msa0214710:CDS |
| GGCTAATCCTTTGCAAGACT+TGG | 0.367609 | 2_1:-59295927 | None:intergenic |
| ACCTATTTCAATTGCAAAAG+AGG | 0.400990 | 2_1:+59296161 | Msa0214710:CDS |
| CAGTGAATCTGATTGTGTTA+AGG | 0.440858 | 2_1:+59295970 | Msa0214710:CDS |
| TCAATTTCAGCTGAGTGTGT+TGG | 0.497821 | 2_1:+59296128 | Msa0214710:CDS |
| ACACACTCAGCTGAAATTGA+AGG | 0.502802 | 2_1:-59296125 | None:intergenic |
| TTCACGTTTAAGAGAGGTGA+AGG | 0.516785 | 2_1:+59295888 | None:intergenic |
| TTTCAATTGCAAAAGAGGAC+AGG | 0.525074 | 2_1:+59296166 | Msa0214710:CDS |
| AGATCATACAAGGAGTGTGC+TGG | 0.532397 | 2_1:+59296092 | Msa0214710:CDS |
| GAGACACTTAACTAATTCCA+TGG | 0.532404 | 2_1:-59295948 | None:intergenic |
| GTCTTGCAAAGGATTAGCCA+TGG | 0.600408 | 2_1:+59295931 | Msa0214710:CDS |
| GGTTGATAATAGATCATACA+AGG | 0.601750 | 2_1:+59296082 | Msa0214710:intron |
| ACAATGTCCAAGTCTTGCAA+AGG | 0.613550 | 2_1:+59295920 | Msa0214710:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGTTTATGATTATGAAT+AGG | + | chr2_1:59296061-59296080 | Msa0214710:intron | 15.0% |
| !!! | TGATTTTTGTGATGTTAAAA+TGG | + | chr2_1:59296037-59296056 | Msa0214710:intron | 20.0% |
| !!! | GATTTTTGTGATGTTAAAAT+GGG | + | chr2_1:59296038-59296057 | Msa0214710:intron | 20.0% |
| !! | GGTTGATAATAGATCATACA+AGG | + | chr2_1:59296082-59296101 | Msa0214710:intron | 30.0% |
| ACCTATTTCAATTGCAAAAG+AGG | + | chr2_1:59296161-59296180 | Msa0214710:CDS | 30.0% | |
| ! | TCCTCTTTTGCAATTGAAAT+AGG | - | chr2_1:59296165-59296184 | None:intergenic | 30.0% |
| GAGACACTTAACTAATTCCA+TGG | - | chr2_1:59295951-59295970 | None:intergenic | 35.0% | |
| CAGTGAATCTGATTGTGTTA+AGG | + | chr2_1:59295970-59295989 | Msa0214710:CDS | 35.0% | |
| TTTCAATTGCAAAAGAGGAC+AGG | + | chr2_1:59296166-59296185 | Msa0214710:CDS | 35.0% | |
| ACAATGTCCAAGTCTTGCAA+AGG | + | chr2_1:59295920-59295939 | Msa0214710:exon | 40.0% | |
| ACACACTCAGCTGAAATTGA+AGG | - | chr2_1:59296128-59296147 | None:intergenic | 40.0% | |
| TCAATTTCAGCTGAGTGTGT+TGG | + | chr2_1:59296128-59296147 | Msa0214710:CDS | 40.0% | |
| GGCTAATCCTTTGCAAGACT+TGG | - | chr2_1:59295930-59295949 | None:intergenic | 45.0% | |
| !! | GTCTTGCAAAGGATTAGCCA+TGG | + | chr2_1:59295931-59295950 | Msa0214710:CDS | 45.0% |
| ! | AGATCATACAAGGAGTGTGC+TGG | + | chr2_1:59296092-59296111 | Msa0214710:CDS | 45.0% |
| !! | AGCTGAGTGTGTTGGTCTTA+GGG | + | chr2_1:59296136-59296155 | Msa0214710:CDS | 45.0% |
| !! | CAGCTGAGTGTGTTGGTCTT+AGG | + | chr2_1:59296135-59296154 | Msa0214710:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 59295894 | 59296190 | 59295894 | ID=Msa0214710;Name=Msa0214710 |
| chr2_1 | mRNA | 59295894 | 59296190 | 59295894 | ID=Msa0214710-mRNA-1;Parent=Msa0214710;Name=Msa0214710-mRNA-1;_AED=0.04;_eAED=0.04;_QI=29|1|0.5|1|1|1|2|0|59 |
| chr2_1 | exon | 59295894 | 59295991 | 59295894 | ID=Msa0214710-mRNA-1:exon:16319;Parent=Msa0214710-mRNA-1 |
| chr2_1 | exon | 59296083 | 59296190 | 59296083 | ID=Msa0214710-mRNA-1:exon:16320;Parent=Msa0214710-mRNA-1 |
| chr2_1 | five_prime_UTR | 59295894 | 59295922 | 59295894 | ID=Msa0214710-mRNA-1:five_prime_utr;Parent=Msa0214710-mRNA-1 |
| chr2_1 | CDS | 59295923 | 59295991 | 59295923 | ID=Msa0214710-mRNA-1:cds;Parent=Msa0214710-mRNA-1 |
| chr2_1 | CDS | 59296083 | 59296190 | 59296083 | ID=Msa0214710-mRNA-1:cds;Parent=Msa0214710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
