AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77433


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77433.t1 MTR_6g013990 85.938 256 36 0 1 256 1 256 1.30e-154 442
MS.gene77433.t1 MTR_6g013990 97.059 68 2 0 257 324 413 480 2.22e-35 134
MS.gene77433.t1 MTR_6g013960 78.295 258 54 1 1 256 1 258 1.14e-144 417
MS.gene77433.t1 MTR_6g013960 83.824 68 11 0 257 324 415 482 9.01e-30 118
MS.gene77433.t1 MTR_6g011340 75.969 258 60 1 1 256 1 258 3.74e-138 400
MS.gene77433.t1 MTR_6g011340 88.235 68 8 0 257 324 415 482 1.29e-31 124
MS.gene77433.t1 MTR_6g014187 72.481 258 69 1 1 256 1 258 4.60e-134 390
MS.gene77433.t1 MTR_6g014187 80.882 68 13 0 257 324 415 482 2.23e-27 112
MS.gene77433.t1 MTR_6g014300 66.154 260 84 2 1 256 1 260 3.25e-121 357
MS.gene77433.t1 MTR_6g014300 74.627 67 17 0 258 324 402 468 2.08e-24 103
MS.gene77433.t1 MTR_6g013450 65.637 259 86 2 1 256 1 259 1.79e-119 353
MS.gene77433.t1 MTR_6g013450 73.529 68 18 0 257 324 416 483 4.28e-26 108
MS.gene77433.t1 MTR_0288s0020 61.566 281 104 3 1 277 1 281 5.35e-119 351
MS.gene77433.t1 MTR_0288s0020 82.353 68 12 0 257 324 396 463 6.88e-29 115
MS.gene77433.t1 MTR_6g014040 66.795 259 83 2 1 256 1 259 4.55e-117 347
MS.gene77433.t1 MTR_6g014040 83.824 68 11 0 257 324 416 483 4.97e-30 119
MS.gene77433.t1 MTR_6g013440 65.251 259 87 2 1 256 1 259 1.77e-116 345
MS.gene77433.t1 MTR_6g013440 72.059 68 19 0 257 324 416 483 5.98e-24 102
MS.gene77433.t1 MTR_6g014020 64.341 258 90 1 1 256 1 258 2.70e-116 345
MS.gene77433.t1 MTR_6g014020 73.529 68 18 0 257 324 415 482 1.43e-24 103
MS.gene77433.t1 MTR_6g014270 62.500 256 92 2 5 256 2 257 4.59e-116 344
MS.gene77433.t1 MTR_6g014270 88.235 68 8 0 257 324 414 481 8.83e-32 124
MS.gene77433.t1 MTR_6g014186 61.417 254 96 1 5 256 2 255 5.32e-116 342
MS.gene77433.t1 MTR_6g014186 77.612 67 15 0 258 324 375 441 7.79e-27 110
MS.gene77433.t1 MTR_6g014150 65.354 254 86 1 5 256 2 255 8.24e-113 335
MS.gene77433.t1 MTR_6g014150 77.612 67 15 0 258 324 413 479 4.10e-26 108
MS.gene77433.t1 MTR_6g014310 66.409 259 84 2 1 256 1 259 2.95e-112 334
MS.gene77433.t1 MTR_6g014310 76.471 68 16 0 257 324 416 483 6.83e-26 107
MS.gene77433.t1 MTR_6g014200 66.142 254 84 1 5 256 2 255 4.67e-112 333
MS.gene77433.t1 MTR_6g014200 85.294 68 10 0 257 324 412 479 6.55e-31 121
MS.gene77433.t1 MTR_8g059425 65.891 258 84 3 1 256 1 256 2.85e-111 332
MS.gene77433.t1 MTR_8g059425 80.882 68 13 0 257 324 413 480 1.22e-28 115
MS.gene77433.t1 MTR_6g013920 67.054 258 82 2 1 256 1 257 5.70e-111 331
MS.gene77433.t1 MTR_6g013920 77.941 68 15 0 257 324 414 481 1.16e-26 110
MS.gene77433.t1 MTR_6g013900 68.992 258 77 2 1 256 1 257 1.97e-110 330
MS.gene77433.t1 MTR_6g013900 77.941 68 15 0 257 324 414 481 1.42e-26 109
MS.gene77433.t1 MTR_6g014220 60.853 258 96 2 1 256 1 255 1.81e-106 319
MS.gene77433.t1 MTR_6g014220 88.235 68 8 0 257 324 413 480 3.10e-31 122
MS.gene77433.t1 MTR_6g014050 65.637 259 86 2 1 256 1 259 1.91e-105 317
MS.gene77433.t1 MTR_6g014050 86.765 68 9 0 257 324 416 483 3.44e-30 119
MS.gene77433.t1 MTR_3g008010 60.078 258 98 2 1 256 1 255 3.44e-104 313
MS.gene77433.t1 MTR_3g008010 75.000 68 17 0 257 324 413 480 5.35e-26 108
MS.gene77433.t1 MTR_7g011470 62.162 259 80 3 1 256 1 244 2.13e-103 311
MS.gene77433.t1 MTR_7g011470 83.582 67 11 0 258 324 402 468 2.87e-29 117
MS.gene77433.t1 MTR_6g014290 57.364 258 105 2 1 256 1 255 6.42e-102 308
MS.gene77433.t1 MTR_6g014290 80.882 68 13 0 257 324 413 480 1.78e-28 115
MS.gene77433.t1 MTR_5g058320 59.846 259 85 3 1 256 1 243 8.96e-102 307
MS.gene77433.t1 MTR_5g058320 76.471 68 16 0 257 324 400 467 3.19e-27 111
MS.gene77433.t1 MTR_6g014250 58.915 258 101 2 1 256 1 255 5.07e-101 305
MS.gene77433.t1 MTR_6g014250 79.412 68 14 0 257 324 413 480 1.93e-27 112
MS.gene77433.t1 MTR_7g011470 61.004 259 79 3 1 256 1 240 2.38e-100 303
MS.gene77433.t1 MTR_7g011470 83.582 67 11 0 258 324 398 464 2.57e-29 117
MS.gene77433.t1 MTR_6g014195 70.256 195 58 0 1 195 1 195 3.59e-100 294
MS.gene77433.t1 MTR_6g014160 58.140 258 88 3 1 256 1 240 3.92e-97 293
MS.gene77433.t1 MTR_6g014170 58.140 258 87 3 1 256 1 239 5.82e-95 290
MS.gene77433.t1 MTR_6g014170 86.765 68 9 0 257 324 397 464 3.84e-31 122
MS.gene77433.t1 MTR_0199s0010 52.174 276 125 4 1 274 1 271 7.57e-95 283
MS.gene77433.t1 MTR_6g013680 63.235 204 73 1 55 256 2 205 1.84e-89 272
MS.gene77433.t1 MTR_6g013680 80.556 72 10 2 255 324 308 377 1.11e-26 108
MS.gene77433.t1 MTR_6g014240 53.200 250 89 2 7 256 4 225 3.73e-86 266
MS.gene77433.t1 MTR_6g014240 79.412 68 14 0 257 324 382 449 2.43e-28 114
MS.gene77433.t1 MTR_5g464810 49.805 257 121 4 3 256 5 256 5.19e-81 254
MS.gene77433.t1 MTR_5g464810 50.725 69 32 2 257 324 413 480 1.87e-11 65.1
MS.gene77433.t1 MTR_5g064240 49.805 257 121 4 3 256 5 256 5.19e-81 254
MS.gene77433.t1 MTR_5g064240 50.725 69 32 2 257 324 413 480 1.87e-11 65.1
MS.gene77433.t1 MTR_2g008210 50.794 252 114 3 7 256 8 251 2.49e-79 249
MS.gene77433.t1 MTR_2g008210 58.824 68 27 1 257 323 411 478 4.81e-16 79.0
MS.gene77433.t1 MTR_5g464760 48.828 256 121 5 6 256 8 258 9.44e-78 246
MS.gene77433.t1 MTR_0036s0220 49.004 251 120 4 9 256 11 256 1.41e-77 245
MS.gene77433.t1 MTR_0036s0220 48.529 68 33 2 257 323 413 479 4.31e-11 63.9
MS.gene77433.t1 MTR_8g007585 58.549 193 76 2 1 193 1 189 1.01e-75 238
MS.gene77433.t1 MTR_8g007585 85.294 68 10 0 257 324 327 394 4.04e-30 118
MS.gene77433.t1 MTR_0475s0020 75.969 129 30 1 1 128 1 129 6.79e-66 206
MS.gene77433.t1 MTR_3g079480 43.651 252 135 3 7 256 18 264 6.81e-65 213
MS.gene77433.t1 MTR_3g079480 56.923 65 28 0 258 322 425 489 1.61e-16 80.5
MS.gene77433.t1 MTR_3g479520 42.023 257 142 3 2 256 7 258 6.15e-64 210
MS.gene77433.t1 MTR_3g479520 55.385 65 29 0 258 322 419 483 4.25e-16 79.3
MS.gene77433.t1 MTR_3g479490 41.897 253 140 3 6 256 2 249 1.91e-61 203
MS.gene77433.t1 MTR_3g479490 53.846 65 30 0 258 322 410 474 4.70e-16 79.0
MS.gene77433.t1 MTR_8g043470 52.910 189 69 2 59 245 9 179 4.74e-61 199
MS.gene77433.t1 MTR_8g043470 76.471 68 16 0 257 324 313 380 6.81e-27 109
MS.gene77433.t1 MTR_3g479470 41.667 252 140 3 7 256 10 256 5.08e-60 199
MS.gene77433.t1 MTR_4g094220 40.234 256 138 6 8 256 5 252 8.38e-58 194
MS.gene77433.t1 MTR_4g094220 54.098 61 28 0 258 318 415 475 9.86e-15 75.1
MS.gene77433.t1 MTR_6g013435 58.140 129 51 2 131 256 1 129 2.51e-43 151
MS.gene77433.t1 MTR_6g013435 73.529 68 18 0 257 324 242 309 4.75e-25 103
MS.gene77433.t1 MTR_3g479620 46.154 169 86 2 6 174 2 165 2.55e-43 147
MS.gene77433.t1 MTR_0477s0010 55.652 115 48 2 131 242 1 115 1.70e-35 131
MS.gene77433.t1 MTR_0477s0010 76.119 67 16 0 258 324 253 319 3.93e-26 106
MS.gene77433.t1 MTR_6g014190 83.582 67 11 0 258 324 223 289 4.12e-30 116
MS.gene77433.t1 MTR_6g014190 43.077 65 35 1 194 256 1 65 6.99e-12 65.5
MS.gene77433.t1 MTR_5g066390 80.882 68 13 0 257 324 150 217 4.65e-29 111
MS.gene77433.t1 MTR_6g014185 38.679 212 49 6 47 256 21 153 2.83e-27 110
MS.gene77433.t1 MTR_6g014185 86.154 65 8 1 259 322 281 345 1.10e-26 108
MS.gene77433.t1 MTR_6g013890 59.551 89 33 2 171 256 19 107 5.91e-27 107
MS.gene77433.t1 MTR_5g031860 29.502 261 147 8 9 256 11 247 1.15e-22 98.6
MS.gene77433.t1 MTR_5g031830 29.008 262 148 8 9 256 11 248 3.62e-22 97.1
MS.gene77433.t1 MTR_6g014000 73.016 63 17 0 257 319 91 153 4.60e-21 94.0
MS.gene77433.t1 MTR_3g069690 29.752 242 138 10 12 250 10 222 1.18e-19 89.7
MS.gene77433.t1 MTR_3g069710 29.268 246 135 11 12 250 14 227 6.02e-19 87.4
MS.gene77433.t1 MTR_6g038240 27.200 250 153 8 9 256 10 232 9.07e-19 87.0
MS.gene77433.t1 MTR_5g072830 27.823 248 142 7 10 251 10 226 1.93e-17 83.2
MS.gene77433.t1 MTR_5g072810 26.378 254 159 6 1 251 3 231 2.65e-17 82.8
MS.gene77433.t1 MTR_4g064987 28.745 247 138 10 12 250 10 226 1.29e-16 80.5
MS.gene77433.t1 MTR_7g013220 26.891 238 153 7 9 239 4 227 1.34e-16 80.5
MS.gene77433.t1 MTR_5g072840 26.613 248 145 7 10 251 10 226 1.44e-16 80.5
MS.gene77433.t1 MTR_7g013200 25.541 231 154 6 9 239 4 216 1.71e-16 80.1
MS.gene77433.t1 MTR_2086s0010 53.846 65 30 0 258 322 108 172 1.94e-16 76.3
MS.gene77433.t1 MTR_1996s0010 53.846 65 30 0 258 322 108 172 1.94e-16 76.3
MS.gene77433.t1 MTR_3g479610 58.462 65 27 0 258 322 249 313 2.61e-16 78.6
MS.gene77433.t1 MTR_3g479610 40.476 84 48 1 175 256 5 88 1.14e-13 70.9
MS.gene77433.t1 MTR_5g035580 23.600 250 149 9 10 252 13 227 3.20e-16 79.3
MS.gene77433.t1 MTR_6g038230 26.016 246 150 9 10 251 11 228 4.72e-15 75.9
MS.gene77433.t1 MTR_5g035560 23.600 250 149 9 10 252 11 225 1.04e-14 75.1
MS.gene77433.t1 MTR_0891s0010 52.308 65 31 0 258 322 226 290 3.11e-14 72.4
MS.gene77433.t1 MTR_5g075440 28.571 259 143 9 10 256 10 238 3.13e-14 73.6
MS.gene77433.t1 MTR_7g013260 29.268 164 102 5 9 171 5 155 4.12e-14 73.2
MS.gene77433.t1 MTR_7g013240 25.767 163 109 3 9 171 5 155 7.02e-14 72.4
MS.gene77433.t1 MTR_4g064987 27.935 247 134 11 12 250 10 220 1.54e-13 71.2
MS.gene77433.t1 MTR_7g080935 26.877 253 151 9 8 256 9 231 1.66e-13 71.2
MS.gene77433.t1 MTR_6g038300 25.207 242 149 8 9 246 10 223 2.14e-13 70.9
MS.gene77433.t1 MTR_6g038200 26.829 246 148 10 10 251 11 228 3.05e-13 70.5
MS.gene77433.t1 MTR_7g080940 26.070 257 148 11 8 256 9 231 4.64e-13 70.1
MS.gene77433.t1 MTR_7g117405 28.333 240 141 9 9 239 11 228 5.95e-13 69.7
MS.gene77433.t1 MTR_1g107375 24.900 249 155 8 5 247 3 225 7.37e-13 69.3
MS.gene77433.t1 MTR_8g064880 24.806 258 155 9 4 247 3 235 8.86e-13 69.3
MS.gene77433.t1 MTR_7g106850 73.684 38 9 1 14 50 143 180 1.24e-12 65.9
MS.gene77433.t1 MTR_6g038220 26.378 254 151 10 5 251 3 227 1.33e-12 68.6
MS.gene77433.t1 MTR_7g080950 25.993 277 160 10 6 272 2 243 1.54e-12 68.2
MS.gene77433.t1 MTR_7g013180 22.917 192 133 3 9 192 4 188 7.71e-12 66.2
MS.gene77433.t1 MTR_4g095008 25.896 251 152 13 12 256 13 235 1.10e-11 65.9
MS.gene77433.t1 MTR_7g080900 25.098 255 161 9 5 256 7 234 1.37e-11 65.5
MS.gene77433.t1 MTR_8g064870 28.571 189 103 9 3 179 4 172 1.75e-11 65.1
MS.gene77433.t1 MTR_1g107285 31.016 187 103 7 12 188 10 180 3.44e-11 64.3
MS.gene77433.t1 MTR_1g107350 28.571 182 110 8 5 179 3 171 3.90e-11 64.3
MS.gene77433.t1 MTR_1g032490 24.490 245 156 8 10 246 10 233 5.49e-11 63.5
MS.gene77433.t1 MTR_1g107315 24.603 252 159 9 5 247 3 232 6.78e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77433.t1 AT1G22360 47.079 291 133 6 1 276 1 285 6.10e-82 256
MS.gene77433.t1 AT1G22360 50.000 68 33 1 257 323 412 479 7.91e-12 66.2
MS.gene77433.t1 AT1G22360 47.079 291 133 6 1 276 1 285 1.13e-81 255
MS.gene77433.t1 AT1G22400 47.203 286 129 6 7 276 10 289 7.58e-81 254
MS.gene77433.t1 AT1G22400 52.941 68 31 1 257 323 416 483 9.30e-14 72.0
MS.gene77433.t1 AT1G22340 46.316 285 132 5 7 276 10 288 6.78e-80 251
MS.gene77433.t1 AT1G22340 55.072 69 30 1 257 324 416 484 8.59e-15 75.5
MS.gene77433.t1 AT1G22370 47.018 285 125 6 7 276 10 283 9.41e-78 246
MS.gene77433.t1 AT1G22380 44.056 286 139 5 6 276 9 288 7.72e-74 236
MS.gene77433.t1 AT1G22380 52.941 68 31 1 257 323 415 482 1.12e-14 75.1
MS.gene77433.t1 AT1G78270 45.276 254 131 4 5 256 8 255 2.32e-69 224
MS.gene77433.t1 AT1G78270 49.254 67 33 1 257 322 415 481 5.46e-12 66.6
MS.gene77433.t1 AT5G59580 32.520 246 131 9 8 247 7 223 4.90e-22 96.7
MS.gene77433.t1 AT3G46670 30.769 247 142 8 6 247 2 224 8.69e-22 95.9
MS.gene77433.t1 AT5G59590 31.746 252 140 9 1 247 1 225 8.93e-22 95.9
MS.gene77433.t1 AT2G36970 29.412 272 159 8 1 256 1 255 2.39e-21 94.7
MS.gene77433.t1 AT3G11340 30.196 255 133 12 6 251 5 223 1.25e-20 92.4
MS.gene77433.t1 AT5G05890 29.918 244 147 6 10 250 8 230 1.42e-20 92.4
MS.gene77433.t1 AT3G46660 32.500 240 132 10 6 239 7 222 1.53e-20 92.0
MS.gene77433.t1 AT5G05900 30.126 239 143 8 10 244 8 226 1.58e-20 92.0
MS.gene77433.t1 AT5G38010 30.400 250 150 6 1 247 1 229 1.40e-19 89.4
MS.gene77433.t1 AT5G05860 26.971 241 152 4 10 250 9 225 1.86e-19 89.0
MS.gene77433.t1 AT5G05880 29.412 238 140 7 10 244 8 220 1.92e-19 89.0
MS.gene77433.t1 AT3G02100 28.743 167 110 5 8 171 11 171 4.48e-19 87.8
MS.gene77433.t1 AT5G05870 29.555 247 145 7 10 250 8 231 7.23e-18 84.3
MS.gene77433.t1 AT5G38040 28.692 237 131 9 19 247 19 225 7.06e-17 81.3
MS.gene77433.t1 AT3G21560 27.969 261 138 12 9 249 11 241 4.87e-16 79.0
MS.gene77433.t1 AT4G15490 29.231 260 139 12 10 252 8 239 9.28e-15 75.1
MS.gene77433.t1 AT1G22370 38.889 108 50 3 184 276 7 113 3.53e-14 72.4
MS.gene77433.t1 AT4G15500 26.848 257 148 12 9 253 8 236 4.16e-14 73.2
MS.gene77433.t1 AT3G55700 28.632 234 137 9 12 239 10 219 6.21e-13 69.7
MS.gene77433.t1 AT3G46690 27.778 252 149 9 1 247 1 224 6.88e-13 69.3
MS.gene77433.t1 AT2G31790 27.309 249 150 9 7 251 5 226 9.57e-13 68.9
MS.gene77433.t1 AT3G46680 28.627 255 135 10 6 247 5 225 1.79e-12 68.2
MS.gene77433.t1 AT3G46650 25.194 258 145 8 1 251 1 217 1.05e-11 65.9
MS.gene77433.t1 AT2G28080 24.180 244 163 6 15 251 23 251 1.34e-11 65.5
MS.gene77433.t1 AT3G46700 26.104 249 154 8 1 248 1 220 3.41e-11 64.3
MS.gene77433.t1 AT2G26480 26.360 239 141 8 7 241 5 212 6.67e-11 63.5

Find 61 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCAACATTGGATTGATA+TGG 0.270676 5.1:-30670568 None:intergenic
TCAGCAGCATCTACTGTAAA+TGG 0.295141 5.1:-30670902 None:intergenic
GCTAAAGTTGACGCGATTCC+AGG 0.305944 5.1:+30671155 MS.gene77433:CDS
TTATCTAACAGATGGATATT+TGG 0.307095 5.1:+30671130 MS.gene77433:CDS
GAACTTGGACAAAGTGATTA+AGG 0.324980 5.1:+30672003 MS.gene77433:CDS
AGGTTATTTGAAAGCCTCTA+AGG 0.339199 5.1:-30670607 None:intergenic
TCAGAAACTAAACAAGTAAC+TGG 0.360551 5.1:-30670869 None:intergenic
GTTAAACCATCAAAGGCATT+TGG 0.361890 5.1:-30670677 None:intergenic
AGAGGTCCAAATGCCTTTGA+TGG 0.361997 5.1:+30670671 MS.gene77433:CDS
ATTTGCGAAGAATGGGAGAT+TGG 0.369050 5.1:+30671827 MS.gene77433:intron
GGAAAACTACTTCACCTTAG+AGG 0.373038 5.1:+30670593 MS.gene77433:CDS
CATGGGGAAAAGAGAACAAT+TGG 0.394298 5.1:-30670938 None:intergenic
TTAACTCCATTTCCAGTTCA+AGG 0.403092 5.1:+30670545 MS.gene77433:CDS
ATTTCTAAATTGTTTAAGAA+TGG 0.409131 5.1:+30670992 MS.gene77433:CDS
ATATGGCCTTGAACTGGAAA+TGG 0.427004 5.1:-30670551 None:intergenic
TTTGCGAAGAATGGGAGATT+GGG 0.429782 5.1:+30671828 MS.gene77433:intron
TCCGTCGGAGTTAAACCATC+TGG 0.461575 5.1:-30670722 None:intergenic
GAAACTGATTAATGAATTGA+TGG 0.464761 5.1:+30671889 MS.gene77433:CDS
AGGAAAGAAGATGAGGCAAA+AGG 0.473475 5.1:+30671922 MS.gene77433:CDS
GGATTGATATGGCCTTGAAC+TGG 0.473999 5.1:-30670557 None:intergenic
GAATTGATGGTGGGAGAGAA+AGG 0.480370 5.1:+30671902 MS.gene77433:CDS
TACCTCCTCTCTCTTTACAT+TGG 0.514594 5.1:-30671864 None:intergenic
CTTCATGACTCTGCCACTGC+TGG 0.525593 5.1:+30670836 MS.gene77433:CDS
TAGAAGTAACATGCACTACA+TGG 0.529399 5.1:-30670956 None:intergenic
TTTCCATCTCTATACACCAT+TGG 0.531180 5.1:+30671347 MS.gene77433:CDS
GGACCAATGGTGTATAGAGA+TGG 0.531896 5.1:-30671350 None:intergenic
AAAATCAGTTAAACCATCAA+AGG 0.541491 5.1:-30670684 None:intergenic
GATGAGAGTTATCTAACAGA+TGG 0.542679 5.1:+30671122 MS.gene77433:intron
TCCAGATGGTTTAACTCCGA+CGG 0.549751 5.1:+30670721 MS.gene77433:CDS
ACCATCTGGAATAGTCTCAA+AGG 0.560749 5.1:-30670708 None:intergenic
CAAGAAATTCACCAAAGAAG+TGG 0.561791 5.1:-30670808 None:intergenic
AGGATATTCCTGATATAATG+AGG 0.577513 5.1:+30671198 MS.gene77433:CDS
AGTATTGAAAACAATGGCTG+AGG 0.577645 5.1:-30671279 None:intergenic
ACCTTTGAGACTATTCCAGA+TGG 0.577669 5.1:+30670707 MS.gene77433:CDS
TTAACTCCGACGGATGGTGA+TGG 0.581677 5.1:+30670731 MS.gene77433:CDS
TGGTAGTTCATACATGAACT+TGG 0.582019 5.1:+30671988 MS.gene77433:CDS
ATCAATCCAATGTTGAAACT+AGG 0.583883 5.1:+30670572 MS.gene77433:CDS
GGCCACGGAGTTGAAGAAGA+AGG 0.584340 5.1:+30671943 MS.gene77433:CDS
ACTGATTAATGAATTGATGG+TGG 0.584937 5.1:+30671892 MS.gene77433:CDS
GAGAGAAAGGAAAGAAGATG+AGG 0.584946 5.1:+30671915 MS.gene77433:CDS
AGAAGTAACATGCACTACAT+GGG 0.584959 5.1:-30670955 None:intergenic
GGAGTTGAAGAAGAAGGCAG+AGG 0.585984 5.1:+30671949 MS.gene77433:CDS
TGCCTTCTTCTTCAACTCCG+TGG 0.587057 5.1:-30671945 None:intergenic
GAAGATGAGGCAAAAGGCCA+CGG 0.589843 5.1:+30671928 MS.gene77433:CDS
ATTGTATTCAGTGTTAACAA+AGG 0.597303 5.1:-30670627 None:intergenic
CTGATTAATGAATTGATGGT+GGG 0.598725 5.1:+30671893 MS.gene77433:CDS
AATGGTGTGCTACCACTCAA+AGG 0.604381 5.1:+30671010 MS.gene77433:CDS
ATTAGAAGTATTGAAAACAA+TGG 0.609028 5.1:-30671285 None:intergenic
AAACGATTGCTCAAATCAAG+AGG 0.613843 5.1:+30670653 MS.gene77433:CDS
GAAACTAAACAAGTAACTGG+AGG 0.618347 5.1:-30670866 None:intergenic
ACATAATGATTACCTTTGAG+TGG 0.621915 5.1:-30671022 None:intergenic
TGATACCAATGTAAAGAGAG+AGG 0.628645 5.1:+30671859 MS.gene77433:CDS
TGGAGGGATAAGACCAGCAG+TGG 0.631182 5.1:-30670849 None:intergenic
AAACTAAACAAGTAACTGGA+GGG 0.637432 5.1:-30670865 None:intergenic
GATGGTTTAACTCCGACGGA+TGG 0.637961 5.1:+30670725 MS.gene77433:CDS
GAAGTAACATGCACTACATG+GGG 0.639344 5.1:-30670954 None:intergenic
ACATCTCCATCACCATCCGT+CGG 0.665024 5.1:-30670737 None:intergenic
AATGGAGTTAACACTGCATG+TGG 0.683935 5.1:-30670533 None:intergenic
TACCAATGTAAAGAGAGAGG+AGG 0.690671 5.1:+30671862 MS.gene77433:CDS
GCAGAGGAAGACACAAGACT+CGG 0.694840 5.1:+30671965 MS.gene77433:CDS
GAGGAAGACACAAGACTCGG+TGG 0.714652 5.1:+30671968 MS.gene77433:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCTAAATTGTTTAAGAA+TGG + chr5.1:30670992-30671011 MS.gene77433:CDS 15.0%
!!! CTTTTATATTTTATCAAATC+AGG - chr5.1:30671233-30671252 None:intergenic 15.0%
!!! ATTAGAAGTATTGAAAACAA+TGG - chr5.1:30671288-30671307 None:intergenic 20.0%
!!! TCTGTTGTTTATGTAAATTT+TGG + chr5.1:30671485-30671504 MS.gene77433:intron 20.0%
!!! TTTACATAAACAACAGATTT+TGG - chr5.1:30671482-30671501 None:intergenic 20.0%
!!! TTTGAAAAACATTAGTTTGA+AGG + chr5.1:30671178-30671197 MS.gene77433:CDS 20.0%
! AAAATCAGTTAAACCATCAA+AGG - chr5.1:30670687-30670706 None:intergenic 25.0%
! ATTGTATTCAGTGTTAACAA+AGG - chr5.1:30670630-30670649 None:intergenic 25.0%
! CAAATAATTCTACTAGTAAG+GGG - chr5.1:30671812-30671831 None:intergenic 25.0%
! GAAACTGATTAATGAATTGA+TGG + chr5.1:30671889-30671908 MS.gene77433:CDS 25.0%
! GCAAATAATTCTACTAGTAA+GGG - chr5.1:30671813-30671832 None:intergenic 25.0%
! TAGAATTATTTGCGAAGAAT+GGG + chr5.1:30671820-30671839 MS.gene77433:intron 25.0%
! TGATTTACAAAAGAAGCTAA+TGG - chr5.1:30671374-30671393 None:intergenic 25.0%
! TTATCTAACAGATGGATATT+TGG + chr5.1:30671130-30671149 MS.gene77433:CDS 25.0%
! TTGAAAGAAATTTCAGATAG+AGG + chr5.1:30671641-30671660 MS.gene77433:intron 25.0%
!! TCTTTTATCCTCATTATATC+AGG - chr5.1:30671209-30671228 None:intergenic 25.0%
!!! AAACTAATGTTTTTCAAACC+TGG - chr5.1:30671176-30671195 None:intergenic 25.0%
!!! AACCTTTTTTGTGGATTATT+AGG + chr5.1:30671573-30671592 MS.gene77433:intron 25.0%
AAACTAAACAAGTAACTGGA+GGG - chr5.1:30670868-30670887 None:intergenic 30.0%
AAGATACTAAATGTCTTGAG+TGG + chr5.1:30671441-30671460 MS.gene77433:intron 30.0%
ACATAATGATTACCTTTGAG+TGG - chr5.1:30671025-30671044 None:intergenic 30.0%
ACCTCTCTTATGAAGAAAAA+GGG - chr5.1:30671049-30671068 None:intergenic 30.0%
ACTGATTAATGAATTGATGG+TGG + chr5.1:30671892-30671911 MS.gene77433:CDS 30.0%
AGGATATTCCTGATATAATG+AGG + chr5.1:30671198-30671217 MS.gene77433:CDS 30.0%
ATCAATCCAATGTTGAAACT+AGG + chr5.1:30670572-30670591 MS.gene77433:CDS 30.0%
CATCTTTAGACTCTAATCTT+TGG + chr5.1:30671414-30671433 MS.gene77433:intron 30.0%
CGCAAATAATTCTACTAGTA+AGG - chr5.1:30671814-30671833 None:intergenic 30.0%
GTAGAATTATTTGCGAAGAA+TGG + chr5.1:30671819-30671838 MS.gene77433:intron 30.0%
GTTTCAACATTGGATTGATA+TGG - chr5.1:30670571-30670590 None:intergenic 30.0%
TACCTCTCTTATGAAGAAAA+AGG - chr5.1:30671050-30671069 None:intergenic 30.0%
TCAGAAACTAAACAAGTAAC+TGG - chr5.1:30670872-30670891 None:intergenic 30.0%
! AAAGATGTCAAGTGATTTTG+TGG - chr5.1:30671401-30671420 None:intergenic 30.0%
! AAATTGTTAGAGTTTGCTTG+GGG + chr5.1:30671533-30671552 MS.gene77433:intron 30.0%
! AAGAATTTTCACCACTTCTT+TGG + chr5.1:30670797-30670816 MS.gene77433:CDS 30.0%
! AGAAATTGTTAGAGTTTGCT+TGG + chr5.1:30671531-30671550 MS.gene77433:intron 30.0%
! AGTTTTCCTAGTTTCAACAT+TGG - chr5.1:30670581-30670600 None:intergenic 30.0%
! CTGATTAATGAATTGATGGT+GGG + chr5.1:30671893-30671912 MS.gene77433:CDS 30.0%
! GAAATTGTTAGAGTTTGCTT+GGG + chr5.1:30671532-30671551 MS.gene77433:intron 30.0%
AAAAATGGCCAACACAACAT+TGG - chr5.1:30671779-30671798 None:intergenic 35.0%
AAACGATTGCTCAAATCAAG+AGG + chr5.1:30670653-30670672 MS.gene77433:CDS 35.0%
AGAAGTAACATGCACTACAT+GGG - chr5.1:30670958-30670977 None:intergenic 35.0%
AGGTTATTTGAAAGCCTCTA+AGG - chr5.1:30670610-30670629 None:intergenic 35.0%
CAAGAAATTCACCAAAGAAG+TGG - chr5.1:30670811-30670830 None:intergenic 35.0%
GAAACTAAACAAGTAACTGG+AGG - chr5.1:30670869-30670888 None:intergenic 35.0%
GAACTTGGACAAAGTGATTA+AGG + chr5.1:30672003-30672022 MS.gene77433:CDS 35.0%
GATGAGAGTTATCTAACAGA+TGG + chr5.1:30671122-30671141 MS.gene77433:intron 35.0%
GGCCTAATAATCCACAAAAA+AGG - chr5.1:30671578-30671597 None:intergenic 35.0%
TAATTCTACTAGTAAGGGGT+TGG - chr5.1:30671808-30671827 None:intergenic 35.0%
TAGAAGTAACATGCACTACA+TGG - chr5.1:30670959-30670978 None:intergenic 35.0%
TGATACCAATGTAAAGAGAG+AGG + chr5.1:30671859-30671878 MS.gene77433:CDS 35.0%
TGGTAGTTCATACATGAACT+TGG + chr5.1:30671988-30672007 MS.gene77433:CDS 35.0%
TGGTTCAAAACTTTCTCTTG+TGG - chr5.1:30671686-30671705 None:intergenic 35.0%
TTAACTCCATTTCCAGTTCA+AGG + chr5.1:30670545-30670564 MS.gene77433:CDS 35.0%
TTTCCATCTCTATACACCAT+TGG + chr5.1:30671347-30671366 MS.gene77433:CDS 35.0%
! AAAAGAAGCTAATGGACCAA+TGG - chr5.1:30671366-30671385 None:intergenic 35.0%
! AGTATTGAAAACAATGGCTG+AGG - chr5.1:30671282-30671301 None:intergenic 35.0%
! ATTAGGCCTGATCTTGTTAT+TGG + chr5.1:30671590-30671609 MS.gene77433:intron 35.0%
! TCAAGAATCCACTGATTGAA+GGG - chr5.1:30671709-30671728 None:intergenic 35.0%
! TCCCTTTTTCTTCATAAGAG+AGG + chr5.1:30671045-30671064 MS.gene77433:intron 35.0%
!! GTTAAACCATCAAAGGCATT+TGG - chr5.1:30670680-30670699 None:intergenic 35.0%
!!! ACAGCAAGAAACCTTTTTTG+TGG + chr5.1:30671564-30671583 MS.gene77433:intron 35.0%
AATGGAGTTAACACTGCATG+TGG - chr5.1:30670536-30670555 None:intergenic 40.0%
AGGAAAGAAGATGAGGCAAA+AGG + chr5.1:30671922-30671941 MS.gene77433:CDS 40.0%
ATAGAGGCCTAATAGCAAGT+TGG + chr5.1:30671657-30671676 MS.gene77433:intron 40.0%
ATTTGCGAAGAATGGGAGAT+TGG + chr5.1:30671827-30671846 MS.gene77433:intron 40.0%
CATGGGGAAAAGAGAACAAT+TGG - chr5.1:30670941-30670960 None:intergenic 40.0%
GAAGTAACATGCACTACATG+GGG - chr5.1:30670957-30670976 None:intergenic 40.0%
GAGAGAAAGGAAAGAAGATG+AGG + chr5.1:30671915-30671934 MS.gene77433:CDS 40.0%
GGAAAACTACTTCACCTTAG+AGG + chr5.1:30670593-30670612 MS.gene77433:CDS 40.0%
TACCAATGTAAAGAGAGAGG+AGG + chr5.1:30671862-30671881 MS.gene77433:CDS 40.0%
TACCTCCTCTCTCTTTACAT+TGG - chr5.1:30671867-30671886 None:intergenic 40.0%
TCAGCAGCATCTACTGTAAA+TGG - chr5.1:30670905-30670924 None:intergenic 40.0%
TTTGCGAAGAATGGGAGATT+GGG + chr5.1:30671828-30671847 MS.gene77433:intron 40.0%
! ACCATCTGGAATAGTCTCAA+AGG - chr5.1:30670711-30670730 None:intergenic 40.0%
! AGTGGATTCTTGACTCATTG+CGG + chr5.1:30671716-30671735 MS.gene77433:intron 40.0%
! ATATGGCCTTGAACTGGAAA+TGG - chr5.1:30670554-30670573 None:intergenic 40.0%
! GTCAAGAATCCACTGATTGA+AGG - chr5.1:30671710-30671729 None:intergenic 40.0%
!! ACCTTTGAGACTATTCCAGA+TGG + chr5.1:30670707-30670726 MS.gene77433:CDS 40.0%
AATGGTGTGCTACCACTCAA+AGG + chr5.1:30671010-30671029 MS.gene77433:CDS 45.0%
AGAGGTCCAAATGCCTTTGA+TGG + chr5.1:30670671-30670690 MS.gene77433:CDS 45.0%
GAGCCACCAATAACAAGATC+AGG - chr5.1:30671599-30671618 None:intergenic 45.0%
GATTCTTGACTCATTGCGGA+TGG + chr5.1:30671720-30671739 MS.gene77433:intron 45.0%
GGACCAATGGTGTATAGAGA+TGG - chr5.1:30671353-30671372 None:intergenic 45.0%
TCCAGATGGTTTAACTCCGA+CGG + chr5.1:30670721-30670740 MS.gene77433:CDS 45.0%
TCCAGCACATACACTTTCAG+TGG - chr5.1:30671753-30671772 None:intergenic 45.0%
TTGAACCACCCTTCAATCAG+TGG + chr5.1:30671698-30671717 MS.gene77433:intron 45.0%
! ACCACTGAAAGTGTATGTGC+TGG + chr5.1:30671749-30671768 MS.gene77433:intron 45.0%
! AGAATCCACTGATTGAAGGG+TGG - chr5.1:30671706-30671725 None:intergenic 45.0%
! GGATTGATATGGCCTTGAAC+TGG - chr5.1:30670560-30670579 None:intergenic 45.0%
! GTTAGAGTTTGCTTGGGGTT+TGG + chr5.1:30671538-30671557 MS.gene77433:intron 45.0%
!! AGGCCTGATCTTGTTATTGG+TGG + chr5.1:30671593-30671612 MS.gene77433:intron 45.0%
!! AGGGGTTGGTCAGCAAAAAA+TGG - chr5.1:30671794-30671813 None:intergenic 45.0%
!! GAATTGATGGTGGGAGAGAA+AGG + chr5.1:30671902-30671921 MS.gene77433:CDS 45.0%
!! GTGGACACCAACTTGCTATT+AGG - chr5.1:30671667-30671686 None:intergenic 45.0%
!! TCTTGTTATTGGTGGCTCAG+AGG + chr5.1:30671601-30671620 MS.gene77433:intron 45.0%
ACATCTCCATCACCATCCGT+CGG - chr5.1:30670740-30670759 None:intergenic 50.0%
GAAGATGAGGCAAAAGGCCA+CGG + chr5.1:30671928-30671947 MS.gene77433:CDS 50.0%
GATGGTTTAACTCCGACGGA+TGG + chr5.1:30670725-30670744 MS.gene77433:CDS 50.0%
GCAGAGGAAGACACAAGACT+CGG + chr5.1:30671965-30671984 MS.gene77433:CDS 50.0%
GCTAAAGTTGACGCGATTCC+AGG + chr5.1:30671155-30671174 MS.gene77433:CDS 50.0%
GGAGTTGAAGAAGAAGGCAG+AGG + chr5.1:30671949-30671968 MS.gene77433:CDS 50.0%
TCCGTCGGAGTTAAACCATC+TGG - chr5.1:30670725-30670744 None:intergenic 50.0%
TGCCTTCTTCTTCAACTCCG+TGG - chr5.1:30671948-30671967 None:intergenic 50.0%
TTAACTCCGACGGATGGTGA+TGG + chr5.1:30670731-30670750 MS.gene77433:CDS 50.0%
! CTGGAGTGCCAATGTTGTGT+TGG + chr5.1:30671768-30671787 MS.gene77433:intron 50.0%
CTTCATGACTCTGCCACTGC+TGG + chr5.1:30670836-30670855 MS.gene77433:CDS 55.0%
GAGGAAGACACAAGACTCGG+TGG + chr5.1:30671968-30671987 MS.gene77433:CDS 55.0%
GGCCACGGAGTTGAAGAAGA+AGG + chr5.1:30671943-30671962 MS.gene77433:CDS 55.0%
TGGAGGGATAAGACCAGCAG+TGG - chr5.1:30670852-30670871 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 30670509 30672045 30670509 ID=MS.gene77433
chr5.1 mRNA 30670509 30672045 30670509 ID=MS.gene77433.t1;Parent=MS.gene77433
chr5.1 exon 30670509 30671031 30670509 ID=MS.gene77433.t1.exon1;Parent=MS.gene77433.t1
chr5.1 CDS 30670509 30671031 30670509 ID=cds.MS.gene77433.t1;Parent=MS.gene77433.t1
chr5.1 exon 30671123 30671368 30671123 ID=MS.gene77433.t1.exon2;Parent=MS.gene77433.t1
chr5.1 CDS 30671123 30671368 30671123 ID=cds.MS.gene77433.t1;Parent=MS.gene77433.t1
chr5.1 exon 30671837 30672045 30671837 ID=MS.gene77433.t1.exon3;Parent=MS.gene77433.t1
chr5.1 CDS 30671837 30672045 30671837 ID=cds.MS.gene77433.t1;Parent=MS.gene77433.t1
Gene Sequence

>MS.gene77433

ATGAGTGACTATGCAGAAAAAAAACCACATGCAGTGTTAACTCCATTTCCAGTTCAAGGCCATATCAATCCAATGTTGAAACTAGGAAAACTACTTCACCTTAGAGGCTTTCAAATAACCTTTGTTAACACTGAATACAATCACAAACGATTGCTCAAATCAAGAGGTCCAAATGCCTTTGATGGTTTAACTGATTTTACCTTTGAGACTATTCCAGATGGTTTAACTCCGACGGATGGTGATGGAGATGTTAGTCAAGACTTACGCGCTCTTTGTCTATCAATCATGAAGAATTTTCACCACTTCTTTGGTGAATTTCTTGCTAAACTTCATGACTCTGCCACTGCTGGTCTTATCCCTCCAGTTACTTGTTTAGTTTCTGATTACAACATGCCATTTACAGTAGATGCTGCTGAAGAACATGAACTTCCAATTGTTCTCTTTTCCCCATGTAGTGCATGTTACTTCTATTCTACTTTTCATATTTCTAAATTGTTTAAGAATGGTGTGCTACCACTCAAAGGTAATCATTATGTTCCCTTTTTCTTCATAAGAGAGGTATGTATTTATGTATATAACTTCAAGAAATTGACTTTTGCAATTGTGATATTCAGATGAGAGTTATCTAACAGATGGATATTTGGACGCTAAAGTTGACGCGATTCCAGGTTTGAAAAACATTAGTTTGAAGGATATTCCTGATATAATGAGGATAAAAGATCCTGATTTGATAAAATATAAAAGTCAAGAGACAGATAAATGTCATAGAGCCTCAGCCATTGTTTTCAATACTTCTAATGAACTCGAGAGTGATGCTATGAATGCTCTTAATTCTATATTTCCATCTCTATACACCATTGGTCCATTAGCTTCTTTTGTAAATCAAAGTCCACAAAATCACTTGACATCTTTAGACTCTAATCTTTGGAAAGAAGATACTAAATGTCTTGAGTGGCTTGAATCGAAAGAACCAAAATCTGTTGTTTATGTAAATTTTGGCAGCATTACTGTTATGTCTCAAGAGAAATTGTTAGAGTTTGCTTGGGGTTTGGCGAACAGCAAGAAACCTTTTTTGTGGATTATTAGGCCTGATCTTGTTATTGGTGGCTCAGAGGTGTTGTCATCTGATTTTTTGAAAGAAATTTCAGATAGAGGCCTAATAGCAAGTTGGTGTCCACAAGAGAAAGTTTTGAACCACCCTTCAATCAGTGGATTCTTGACTCATTGCGGATGGAACTCAACCACTGAAAGTGTATGTGCTGGAGTGCCAATGTTGTGTTGGCCATTTTTTGCTGACCAACCCCTTACTAGTAGAATTATTTGCGAAGAATGGGAGATTGGGATGAAAATTGATACCAATGTAAAGAGAGAGGAGGTAGAGAAACTGATTAATGAATTGATGGTGGGAGAGAAAGGAAAGAAGATGAGGCAAAAGGCCACGGAGTTGAAGAAGAAGGCAGAGGAAGACACAAGACTCGGTGGTAGTTCATACATGAACTTGGACAAAGTGATTAAGGATGTCTTGCTTAAAATGTGA

Protein sequence

>MS.gene77433.t1

MSDYAEKKPHAVLTPFPVQGHINPMLKLGKLLHLRGFQITFVNTEYNHKRLLKSRGPNAFDGLTDFTFETIPDGLTPTDGDGDVSQDLRALCLSIMKNFHHFFGEFLAKLHDSATAGLIPPVTCLVSDYNMPFTVDAAEEHELPIVLFSPCSACYFYSTFHISKLFKNGVLPLKDESYLTDGYLDAKVDAIPGLKNISLKDIPDIMRIKDPDLIKYKSQETDKCHRASAIVFNTSNELESDAMNALNSIFPSLYTIEWEIGMKIDTNVKREEVEKLINELMVGEKGKKMRQKATELKKKAEEDTRLGGSSYMNLDKVIKDVLLKM