AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023385.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023385.01.T01 MTR_8g092020 80.423 189 5 2 1 157 1 189 5.20e-105 299
MsG0480023385.01.T01 MTR_1g097420 67.391 184 28 4 6 157 2 185 4.63e-80 236
MsG0480023385.01.T01 MTR_1g097420 58.768 211 28 4 6 157 2 212 1.81e-75 225
MsG0480023385.01.T01 MTR_2g101890 59.358 187 44 2 3 157 1 187 3.28e-74 221
MsG0480023385.01.T01 MTR_4g012940 59.783 184 42 2 6 157 2 185 6.83e-74 220
MsG0480023385.01.T01 MTR_4g069850 62.428 173 33 2 8 148 4 176 1.66e-71 214
MsG0480023385.01.T01 MTR_6g039490 59.116 181 42 2 9 157 5 185 1.78e-66 202
MsG0480023385.01.T01 MTR_1452s0010 88.333 60 7 0 23 82 1 60 6.07e-34 115
MsG0480023385.01.T01 MTR_1663s0010 66.667 75 25 0 82 156 1 75 2.16e-32 110
MsG0480023385.01.T01 MTR_1686s0010 63.768 69 24 1 23 90 1 69 9.17e-26 94.4
MsG0480023385.01.T01 MTR_1812s0010 64.062 64 23 0 91 154 10 73 4.57e-25 92.0
MsG0480023385.01.T01 MTR_3g064390 35.802 162 71 5 14 146 12 169 1.50e-23 91.7
MsG0480023385.01.T01 MTR_2g096550 33.537 164 78 4 12 146 15 176 6.48e-23 90.5
MsG0480023385.01.T01 MTR_5g076590 36.025 161 72 6 14 146 12 169 7.66e-23 90.1
MsG0480023385.01.T01 MTR_4g079350 36.646 161 71 5 12 144 13 170 1.72e-22 89.4
MsG0480023385.01.T01 MTR_1g052475 36.025 161 72 5 12 144 15 172 2.03e-22 89.4
MsG0480023385.01.T01 MTR_1g068730 33.742 163 78 4 12 146 15 175 4.67e-22 88.2
MsG0480023385.01.T01 MTR_5g013900 34.756 164 68 6 14 145 11 167 6.19e-22 87.8
MsG0480023385.01.T01 MTR_8g006970 34.568 162 75 5 12 145 8 166 6.56e-22 87.0
MsG0480023385.01.T01 MTR_8g036220 35.849 159 71 5 12 142 16 171 9.03e-22 87.8
MsG0480023385.01.T01 MTR_2g014990 36.646 161 71 5 12 144 13 170 1.17e-21 87.4
MsG0480023385.01.T01 MTR_7g100020 32.370 173 87 4 12 156 15 185 1.25e-21 87.0
MsG0480023385.01.T01 MTR_4g088090 36.646 161 71 5 12 144 13 170 1.51e-21 87.0
MsG0480023385.01.T01 MTR_8g006970 34.568 162 75 5 12 145 22 180 1.58e-21 87.0
MsG0480023385.01.T01 MTR_3g087160 33.125 160 76 4 14 145 11 167 1.97e-21 86.3
MsG0480023385.01.T01 MTR_1g068740 33.129 163 79 4 12 146 15 175 1.98e-21 86.7
MsG0480023385.01.T01 MTR_2g090865 34.783 161 74 5 12 144 11 168 2.22e-21 86.7
MsG0480023385.01.T01 MTR_8g090215 31.638 177 83 5 14 155 11 184 2.34e-21 86.3
MsG0480023385.01.T01 MTR_1g115325 33.129 163 79 4 12 146 15 175 2.37e-21 86.3
MsG0480023385.01.T01 MTR_8g103550 32.941 170 83 6 5 146 2 168 4.11e-21 85.5
MsG0480023385.01.T01 MTR_2g005510 34.177 158 73 5 12 141 15 169 7.30e-21 85.1
MsG0480023385.01.T01 MTR_8g089985 32.738 168 82 5 5 144 10 174 8.12e-21 85.1
MsG0480023385.01.T01 MTR_0262s0050 35.404 161 73 5 12 144 15 172 8.43e-21 85.1
MsG0480023385.01.T01 MTR_7g081700 33.951 162 76 5 12 145 8 166 8.47e-21 84.7
MsG0480023385.01.T01 MTR_7g405790 34.969 163 75 5 12 146 15 174 9.31e-21 85.1
MsG0480023385.01.T01 MTR_4g098950 33.537 164 70 6 14 145 11 167 1.40e-20 84.3
MsG0480023385.01.T01 MTR_3g086980 33.540 161 76 5 12 144 16 173 3.78e-20 83.6
MsG0480023385.01.T01 MTR_2g005500 32.544 169 83 5 5 145 2 167 5.08e-20 82.8
MsG0480023385.01.T01 MTR_6g021790 32.164 171 85 4 12 154 6 173 5.42e-20 82.8
MsG0480023385.01.T01 MTR_2g083860 33.333 159 73 4 12 141 13 167 1.88e-19 81.6
MsG0480023385.01.T01 MTR_4g099470 36.842 133 62 4 32 145 13 142 3.12e-19 80.1
MsG0480023385.01.T01 MTR_3g069510 31.677 161 79 4 12 144 12 169 3.51e-19 80.9
MsG0480023385.01.T01 MTR_4g064897 30.723 166 84 4 7 144 7 169 4.93e-19 80.5
MsG0480023385.01.T01 MTR_6g079550 33.750 160 73 5 12 142 12 167 5.18e-19 80.1
MsG0480023385.01.T01 MTR_2g075950 33.544 158 74 5 12 141 13 167 6.87e-19 80.1
MsG0480023385.01.T01 MTR_2g027660 32.099 162 79 4 12 145 6 164 1.57e-18 79.0
MsG0480023385.01.T01 MTR_8g031680 31.737 167 83 4 13 151 7 170 2.18e-18 78.6
MsG0480023385.01.T01 MTR_1g094220 32.335 167 81 6 9 146 28 191 2.21e-18 78.2
MsG0480023385.01.T01 MTR_7g051940 33.129 163 78 5 12 146 13 172 3.11e-18 78.2
MsG0480023385.01.T01 MTR_4g063160 31.429 175 88 5 12 156 15 187 5.64e-18 77.4
MsG0480023385.01.T01 MTR_1g094220 32.099 162 78 6 9 141 28 186 2.11e-17 75.9
MsG0480023385.01.T01 MTR_1g094220 32.099 162 78 6 9 141 28 186 2.92e-17 75.5
MsG0480023385.01.T01 MTR_1g078200 32.515 163 79 4 12 146 14 173 4.68e-17 75.1
MsG0480023385.01.T01 MTR_2g102060 31.056 161 80 4 14 146 12 169 5.38e-17 74.7
MsG0480023385.01.T01 MTR_1g094220 32.099 162 78 6 9 141 28 186 5.83e-17 75.1
MsG0480023385.01.T01 MTR_8g027220 33.333 159 75 6 12 142 26 181 9.62e-17 74.7
MsG0480023385.01.T01 MTR_8g031870 29.630 162 83 4 13 146 7 165 3.49e-16 72.4
MsG0480023385.01.T01 MTR_2g093510 65.306 49 17 0 109 157 779 827 6.54e-16 74.3
MsG0480023385.01.T01 MTR_8g107070 33.962 159 74 5 12 142 14 169 1.05e-15 72.4
MsG0480023385.01.T01 MTR_3g064390 34.921 126 50 4 14 110 12 134 2.56e-15 69.3
MsG0480023385.01.T01 MTR_8g093740 31.579 171 84 6 1 141 1 168 6.51e-15 69.3
MsG0480023385.01.T01 MTR_3g096350 31.579 171 83 6 1 141 1 167 6.82e-15 69.3
MsG0480023385.01.T01 MTR_1g029450 33.333 159 74 6 12 141 17 172 1.44e-14 68.6
MsG0480023385.01.T01 MTR_7g103070 32.278 158 74 5 14 141 18 172 2.56e-14 67.8
MsG0480023385.01.T01 MTR_8g031660 29.448 163 84 4 12 146 6 165 2.60e-14 67.8
MsG0480023385.01.T01 MTR_1g068730 34.127 126 53 4 12 109 15 138 9.96e-14 65.5
MsG0480023385.01.T01 MTR_1g068740 34.127 126 53 4 12 109 15 138 1.49e-13 65.5
MsG0480023385.01.T01 MTR_7g117910 32.639 144 65 5 12 127 20 159 3.41e-13 64.7
MsG0480023385.01.T01 MTR_8g031830 28.205 156 81 5 13 140 7 159 4.33e-13 64.3
MsG0480023385.01.T01 MTR_1g062760 32.278 158 75 4 13 141 15 169 4.53e-13 64.3
MsG0480023385.01.T01 MTR_3g096350 37.363 91 47 2 1 82 1 90 5.16e-13 63.2
MsG0480023385.01.T01 MTR_8g093740 34.109 129 61 4 34 141 10 135 6.62e-13 63.2
MsG0480023385.01.T01 MTR_3g107717 27.950 161 84 5 13 146 14 169 7.82e-13 63.9
MsG0480023385.01.T01 MTR_3g107707 27.950 161 84 5 13 146 14 169 8.66e-13 63.9
MsG0480023385.01.T01 MTR_3g096350 37.363 91 47 2 1 82 1 90 8.93e-13 62.4
MsG0480023385.01.T01 MTR_3g107713 27.950 161 84 5 13 146 14 169 9.40e-13 63.5
MsG0480023385.01.T01 MTR_1g090717 31.875 160 75 4 13 141 16 172 1.23e-12 63.2
MsG0480023385.01.T01 MTR_5g036990 51.613 62 28 2 34 93 32 93 5.85e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023385.01.T01 AT1G22740 65.761 184 31 2 6 157 2 185 6.96e-80 235
MsG0480023385.01.T01 AT4G09720 61.538 182 38 2 8 157 4 185 5.18e-75 223
MsG0480023385.01.T01 AT4G09720 58.031 193 38 2 8 157 4 196 3.88e-73 218
MsG0480023385.01.T01 AT4G09720 59.893 187 38 2 8 157 4 190 6.36e-73 218
MsG0480023385.01.T01 AT2G21880 62.570 179 35 2 6 152 3 181 1.74e-72 217
MsG0480023385.01.T01 AT1G52280 59.669 181 41 2 6 154 2 182 2.50e-72 216
MsG0480023385.01.T01 AT3G16100 59.669 181 41 2 6 154 2 182 4.37e-72 215
MsG0480023385.01.T01 AT1G49300 58.470 183 44 2 7 157 3 185 3.98e-71 213
MsG0480023385.01.T01 AT1G49300 58.470 183 44 2 7 157 3 185 3.98e-71 213
MsG0480023385.01.T01 AT3G18820 62.428 173 33 2 8 148 4 176 1.01e-70 212
MsG0480023385.01.T01 AT2G21880 64.052 153 32 1 23 152 4 156 1.71e-65 198
MsG0480023385.01.T01 AT2G21880 64.052 153 32 1 23 152 4 156 1.71e-65 198
MsG0480023385.01.T01 AT2G21880 58.101 179 35 3 6 152 3 173 9.95e-63 192
MsG0480023385.01.T01 AT4G09720 61.333 150 35 1 31 157 2 151 2.33e-62 189
MsG0480023385.01.T01 AT4G09720 61.333 150 35 1 31 157 2 151 2.33e-62 189
MsG0480023385.01.T01 AT4G09720 61.333 150 35 1 31 157 2 151 2.33e-62 189
MsG0480023385.01.T01 AT5G39620 45.556 180 66 2 9 156 2 181 2.76e-47 152
MsG0480023385.01.T01 AT3G12160 37.267 161 70 5 12 144 15 172 5.38e-24 93.6
MsG0480023385.01.T01 AT5G59840 33.526 173 85 4 12 156 15 185 7.54e-23 90.5
MsG0480023385.01.T01 AT3G53610 32.948 173 86 4 12 156 15 185 2.00e-22 89.4
MsG0480023385.01.T01 AT3G53610 32.948 173 86 4 12 156 15 185 2.00e-22 89.4
MsG0480023385.01.T01 AT3G53610 32.948 173 86 4 12 156 15 185 2.00e-22 89.4
MsG0480023385.01.T01 AT5G45130 34.682 173 80 5 3 146 1 169 2.03e-22 89.0
MsG0480023385.01.T01 AT2G44610 34.756 164 68 6 14 145 11 167 3.04e-22 88.6
MsG0480023385.01.T01 AT3G15060 35.227 176 79 6 12 155 13 185 3.13e-22 89.0
MsG0480023385.01.T01 AT5G47960 36.025 161 72 5 12 144 15 172 4.10e-22 88.6
MsG0480023385.01.T01 AT5G60860 36.025 161 72 5 12 144 13 170 4.49e-22 88.6
MsG0480023385.01.T01 AT2G33870 34.783 161 74 5 12 144 13 170 5.20e-22 88.2
MsG0480023385.01.T01 AT1G28550 36.076 158 70 5 12 141 13 167 7.79e-22 87.8
MsG0480023385.01.T01 AT1G09630 33.540 161 76 5 12 144 12 169 3.03e-21 86.3
MsG0480023385.01.T01 AT5G10260 33.333 162 73 5 14 145 11 167 3.19e-21 85.9
MsG0480023385.01.T01 AT3G46060 31.792 173 88 4 12 156 15 185 3.71e-21 85.9
MsG0480023385.01.T01 AT3G46060 31.792 173 88 4 12 156 15 185 3.71e-21 85.9
MsG0480023385.01.T01 AT3G46060 31.792 173 88 4 12 156 15 185 3.71e-21 85.9
MsG0480023385.01.T01 AT5G64990 34.503 171 73 6 14 152 9 172 3.78e-21 85.9
MsG0480023385.01.T01 AT5G45750 34.118 170 78 5 12 153 13 176 7.15e-21 85.1
MsG0480023385.01.T01 AT1G73640 33.702 181 78 7 12 154 13 189 9.46e-21 85.1
MsG0480023385.01.T01 AT4G19640 32.370 173 84 5 3 146 1 169 9.87e-21 84.3
MsG0480023385.01.T01 AT1G02130 33.533 167 80 6 12 150 8 171 1.03e-20 84.3
MsG0480023385.01.T01 AT4G17530 32.919 161 77 4 12 144 8 165 1.45e-20 84.0
MsG0480023385.01.T01 AT2G43130 34.356 163 76 5 12 146 12 171 1.49e-20 84.3
MsG0480023385.01.T01 AT4G18430 33.540 161 76 5 12 144 13 170 2.19e-20 84.0
MsG0480023385.01.T01 AT5G47200 32.919 161 77 4 12 144 8 165 2.23e-20 83.6
MsG0480023385.01.T01 AT2G22290 33.333 162 73 5 14 145 11 167 3.43e-20 83.2
MsG0480023385.01.T01 AT5G45130 35.000 160 71 5 16 146 22 177 3.85e-20 83.2
MsG0480023385.01.T01 AT1G18200 34.568 162 73 5 12 144 13 170 4.55e-20 83.6
MsG0480023385.01.T01 AT5G59150 34.161 161 75 5 12 144 12 169 5.49e-20 82.8
MsG0480023385.01.T01 AT1G05810 35.152 165 76 4 8 144 8 169 6.15e-20 82.8
MsG0480023385.01.T01 AT3G11730 33.951 162 76 5 12 145 8 166 7.38e-20 82.4
MsG0480023385.01.T01 AT1G07410 32.530 166 81 5 7 144 7 169 9.17e-20 82.4
MsG0480023385.01.T01 AT4G39890 31.928 166 73 6 13 145 10 168 1.26e-19 82.0
MsG0480023385.01.T01 AT1G05810 35.152 165 76 4 8 144 54 215 1.34e-19 82.8
MsG0480023385.01.T01 AT4G39990 32.911 158 75 5 12 141 17 171 2.19e-19 81.6
MsG0480023385.01.T01 AT5G65270 33.533 167 80 5 6 144 11 174 2.69e-19 81.3
MsG0480023385.01.T01 AT2G31680 33.742 163 77 4 12 146 12 171 3.61e-19 80.9
MsG0480023385.01.T01 AT4G18800 33.544 158 74 4 12 141 13 167 3.94e-19 80.5
MsG0480023385.01.T01 AT3G09900 34.969 163 76 5 12 146 15 175 4.81e-19 80.5
MsG0480023385.01.T01 AT5G03520 34.356 163 77 5 12 146 15 175 6.29e-19 80.1
MsG0480023385.01.T01 AT1G16920 34.810 158 72 5 12 141 13 167 1.18e-18 79.3
MsG0480023385.01.T01 AT1G06400 32.911 158 75 4 12 141 13 167 1.57e-18 79.0
MsG0480023385.01.T01 AT4G17170 32.099 162 79 5 12 145 6 164 1.77e-18 79.0
MsG0480023385.01.T01 AT5G64990 33.146 178 73 7 14 152 9 179 1.78e-18 79.0
MsG0480023385.01.T01 AT3G46830 32.298 161 78 5 12 144 12 169 1.96e-18 79.0
MsG0480023385.01.T01 AT3G46830 32.298 161 78 5 12 144 12 169 1.96e-18 79.0
MsG0480023385.01.T01 AT4G35860 30.409 171 88 5 12 154 6 173 2.40e-18 78.6
MsG0480023385.01.T01 AT4G17160 31.677 161 79 5 13 145 7 164 3.04e-18 78.2
MsG0480023385.01.T01 AT3G54840 32.317 164 79 6 9 143 30 190 3.76e-18 77.4
MsG0480023385.01.T01 AT3G07410 33.129 163 78 4 12 146 12 171 1.31e-17 76.6
MsG0480023385.01.T01 AT1G01200 33.962 159 75 5 12 142 28 184 1.32e-17 77.0
MsG0480023385.01.T01 AT3G54840 31.737 167 82 6 9 146 30 193 2.42e-17 75.5
MsG0480023385.01.T01 AT3G54840 31.677 161 78 6 15 146 2 159 9.19e-17 73.6
MsG0480023385.01.T01 AT5G03520 35.433 127 61 3 39 146 41 165 1.10e-16 73.9
MsG0480023385.01.T01 AT5G47520 30.675 163 82 5 12 146 14 173 6.27e-16 72.4
MsG0480023385.01.T01 AT4G19640 32.857 140 62 4 3 113 1 137 6.87e-16 70.5
MsG0480023385.01.T01 AT4G19640 32.836 134 58 4 14 118 12 142 5.04e-15 69.3
MsG0480023385.01.T01 AT1G43890 31.447 159 77 5 12 141 13 168 3.75e-14 67.4
MsG0480023385.01.T01 AT1G43890 31.447 159 77 5 12 141 13 168 3.75e-14 67.4
MsG0480023385.01.T01 AT1G43890 31.447 159 77 5 12 141 13 168 3.75e-14 67.4
MsG0480023385.01.T01 AT5G03530 31.646 158 76 4 13 141 14 168 4.20e-14 67.4
MsG0480023385.01.T01 AT5G03530 31.646 158 76 4 13 141 14 168 4.20e-14 67.4
MsG0480023385.01.T01 AT5G20020 27.950 161 84 5 13 146 14 169 7.54e-13 63.9
MsG0480023385.01.T01 AT5G55190 27.950 161 84 5 13 146 14 169 9.16e-13 63.9
MsG0480023385.01.T01 AT5G20010 27.950 161 84 5 13 146 14 169 9.26e-13 63.9
MsG0480023385.01.T01 AT4G35860 31.008 129 67 4 45 154 2 127 3.81e-12 61.2
MsG0480023385.01.T01 AT5G59150 35.043 117 54 4 47 144 5 118 2.16e-11 59.3
MsG0480023385.01.T01 AT3G09910 28.655 171 90 4 13 154 14 181 4.24e-11 58.9
MsG0480023385.01.T01 AT3G09910 28.655 171 90 4 13 154 14 181 4.24e-11 58.9
MsG0480023385.01.T01 AT3G09910 29.114 158 80 5 13 141 14 168 4.88e-11 58.9
MsG0480023385.01.T01 AT3G09910 29.114 158 80 5 13 141 14 168 4.88e-11 58.9
MsG0480023385.01.T01 AT3G09910 29.114 158 80 5 13 141 14 168 4.88e-11 58.9

Find 38 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAGAGGTTTCAAAATA+TGG 0.212498 4:-84499869 None:intergenic
CTAGGGAATGGTGTGCTTCT+AGG 0.247665 4:+84499837 MsG0480023384.01.T01:CDS
GCATTTCCCTTTGTATTACT+TGG 0.328430 4:+84499653 MsG0480023384.01.T01:CDS
AGGGGCAGATTGTTGTGTTT+TGG 0.341202 4:+84499082 MsG0480023384.01.T01:CDS
GTCATTGTCCTTGGAGATAG+TGG 0.363454 4:+84498189 MsG0480023384.01.T01:CDS
TGATAAACTCGTAACCTTGC+AGG 0.369262 4:+84498894 MsG0480023384.01.T01:CDS
CAACAGTATAAAGCCACAAT+TGG 0.380292 4:+84498838 MsG0480023384.01.T01:CDS
TAGATGGTGGAAACAGTAGA+AGG 0.386136 4:+84499690 MsG0480023384.01.T01:CDS
AAAATGCAGCTCCAAGACTA+TGG 0.389043 4:-84499055 None:intergenic
TTGCTTAAGGTCATTGTCCT+TGG 0.394981 4:+84498180 MsG0480023384.01.T01:CDS
AACAGTATAAAGCCACAATT+GGG 0.408620 4:+84498839 MsG0480023384.01.T01:CDS
TAGGGAATGGTGTGCTTCTA+GGG 0.415556 4:+84499838 MsG0480023384.01.T01:CDS
CAGAAAGAGAACTTTGCTTA+AGG 0.420667 4:+84498167 MsG0480023384.01.T01:CDS
CAATTGTGGCTTTATACTGT+TGG 0.421726 4:-84498837 None:intergenic
CTTTGTATTACTTGGGAACA+AGG 0.440726 4:+84499661 MsG0480023384.01.T01:CDS
GGGAACAAGGTTGATATAGA+TGG 0.470323 4:+84499674 MsG0480023384.01.T01:CDS
CAGGAAAGGTTCCATAGTCT+TGG 0.475873 4:+84499044 MsG0480023384.01.T01:CDS
AATTGATCTCAGGCAGATAC+AGG 0.484106 4:+84499620 MsG0480023384.01.T01:intron
CATTTCCCTTTGTATTACTT+GGG 0.485534 4:+84499654 MsG0480023384.01.T01:CDS
AGGTTACAGAGAAGAAAGCT+AGG 0.511353 4:+84499819 MsG0480023384.01.T01:intron
AATACAAAGGGAAATGCCTC+AGG 0.512303 4:-84499647 None:intergenic
TTTAAAATTACTCACCTGCA+AGG 0.529499 4:-84498908 None:intergenic
TTTGAAACCTCTGCAAAAGA+GGG 0.539597 4:+84499875 MsG0480023384.01.T01:CDS
GATTTGGGATACTGCAGGAC+AGG 0.541113 4:+84499025 MsG0480023384.01.T01:intron
AACAAAATCAGCCCCAATTG+TGG 0.543201 4:-84498851 None:intergenic
CTTGTTCCCAAGTAATACAA+AGG 0.556095 4:-84499660 None:intergenic
AACAAGGTTGATATAGATGG+TGG 0.570432 4:+84499677 MsG0480023384.01.T01:CDS
CAGAGAAGAAAGCTAGGGAA+TGG 0.574138 4:+84499825 MsG0480023384.01.T01:CDS
TTGTTCCCAAGTAATACAAA+GGG 0.581722 4:-84499659 None:intergenic
TGGCAGATTTGGGATACTGC+AGG 0.587071 4:+84499020 MsG0480023384.01.T01:intron
GGGATACTGCAGGACAGGAA+AGG 0.587274 4:+84499030 MsG0480023384.01.T01:CDS
GGTTACAGAGAAGAAAGCTA+GGG 0.611053 4:+84499820 MsG0480023384.01.T01:intron
TCATTGTCCTTGGAGATAGT+GGG 0.622102 4:+84498190 MsG0480023384.01.T01:CDS
AGATGGTGGAAACAGTAGAA+GGG 0.623050 4:+84499691 MsG0480023384.01.T01:CDS
TAACATACCCACTATCTCCA+AGG 0.630039 4:-84498197 None:intergenic
GGCAGATACAGGCAATCCTG+AGG 0.655656 4:+84499631 MsG0480023384.01.T01:intron
AGGGAATGGTGTGCTTCTAG+GGG 0.665067 4:+84499839 MsG0480023384.01.T01:CDS
ACAGTATAAAGCCACAATTG+GGG 0.725981 4:+84498840 MsG0480023384.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATAGTACTTTTATTTTT+AGG + Chr4:84498965-84498984 MsG0480023384.01.T01:intron 10.0%
!!! TTATAGTACTTTTATTTTTA+GGG + Chr4:84498966-84498985 MsG0480023384.01.T01:intron 10.0%
!! AATTTACATTATCCTAAAAA+CGG - Chr4:84498598-84498617 None:intergenic 15.0%
!! ATGATATTATTATTACTTGA+TGG + Chr4:84498258-84498277 MsG0480023384.01.T01:intron 15.0%
!! CAATTATAGAAAATATATTG+TGG + Chr4:84498773-84498792 MsG0480023384.01.T01:intron 15.0%
!!! TATAGTACTTTTATTTTTAG+GGG + Chr4:84498967-84498986 MsG0480023384.01.T01:intron 15.0%
!!! TCCAAATGATTAATTTTTTT+GGG + Chr4:84498436-84498455 MsG0480023384.01.T01:intron 15.0%
!!! TTCCAAATGATTAATTTTTT+TGG + Chr4:84498435-84498454 MsG0480023384.01.T01:intron 15.0%
!! AAAAAAGGAACAAAACAAAA+GGG - Chr4:84498478-84498497 None:intergenic 20.0%
!! AAAAATTGCATACTCAAAAT+CGG - Chr4:84499562-84499581 None:intergenic 20.0%
!! AACAAAAATTTACAATGGTA+TGG + Chr4:84499000-84499019 MsG0480023384.01.T01:intron 20.0%
!! CATTTGATACATTAAACAAT+TGG + Chr4:84499129-84499148 MsG0480023384.01.T01:intron 20.0%
!! GAATGAACAAAAATTTACAA+TGG + Chr4:84498995-84499014 MsG0480023384.01.T01:intron 20.0%
!! TAAAAAAGGAACAAAACAAA+AGG - Chr4:84498479-84498498 None:intergenic 20.0%
!! TCCCAAAAAAATTAATCATT+TGG - Chr4:84498440-84498459 None:intergenic 20.0%
!!! AAATTCTGATATTTTGTTTC+AGG + Chr4:84498308-84498327 MsG0480023384.01.T01:intron 20.0%
!!! AAATTTGGTCGTTTTAAAAA+AGG - Chr4:84498493-84498512 None:intergenic 20.0%
!!! AATTCTGATATTTTGTTTCA+GGG + Chr4:84498309-84498328 MsG0480023384.01.T01:intron 20.0%
!!! AGAGAAATGTTTAAAATCAT+TGG + Chr4:84499309-84499328 MsG0480023384.01.T01:intron 20.0%
!!! TTTAAAATCATTGGATCAAA+TGG + Chr4:84499318-84499337 MsG0480023384.01.T01:intron 20.0%
!!! TTTTTTAAAACGACCAAATT+TGG + Chr4:84498492-84498511 MsG0480023384.01.T01:intron 20.0%
! AAATTATGGTATCTCACATT+TGG + Chr4:84498746-84498765 MsG0480023384.01.T01:intron 25.0%
! AACTTGTACAAATAGAAAAG+TGG - Chr4:84499217-84499236 None:intergenic 25.0%
! ATATGCTGAAATTGGTTATA+CGG + Chr4:84498703-84498722 MsG0480023384.01.T01:intron 25.0%
! ATCTAAACATATGCTGAAAT+TGG + Chr4:84498695-84498714 MsG0480023384.01.T01:intron 25.0%
! GTTTAGATTGCATGTAAATT+TGG - Chr4:84498683-84498702 None:intergenic 25.0%
! TTTATCTTTCGATAGAATCT+TGG + Chr4:84499489-84499508 MsG0480023384.01.T01:intron 25.0%
!!! AAACTTAAGTGATTTGTTTC+AGG + Chr4:84498401-84498420 MsG0480023384.01.T01:intron 25.0%
!!! GTTTTATTGAAAATGCCAAA+TGG - Chr4:84498364-84498383 None:intergenic 25.0%
AACAGTATAAAGCCACAATT+GGG + Chr4:84498839-84498858 MsG0480023384.01.T01:CDS 30.0%
AATCATTGGATCAAATGGAA+CGG + Chr4:84499323-84499342 MsG0480023384.01.T01:intron 30.0%
CATTTCCCTTTGTATTACTT+GGG + Chr4:84499654-84499673 MsG0480023384.01.T01:CDS 30.0%
GACATGAAAACATATGAAGA+AGG - Chr4:84498232-84498251 None:intergenic 30.0%
GCAACAATTAAAAAGGCAAA+TGG - Chr4:84499799-84499818 None:intergenic 30.0%
GTAACCTGCAACAATTAAAA+AGG - Chr4:84499806-84499825 None:intergenic 30.0%
TAGATTGCATGTAAATTTGG+TGG - Chr4:84498680-84498699 None:intergenic 30.0%
TATCCTAAAAACGGATCTAT+TGG - Chr4:84498589-84498608 None:intergenic 30.0%
TTGTTCCCAAGTAATACAAA+GGG - Chr4:84499662-84499681 None:intergenic 30.0%
TTTGATGTGAAATTGATCTC+AGG + Chr4:84499610-84499629 MsG0480023384.01.T01:intron 30.0%
TTTGCAGAGGTTTCAAAATA+TGG - Chr4:84499872-84499891 None:intergenic 30.0%
! TTGGCAATCTTTTTACTTGT+GGG + Chr4:84498523-84498542 MsG0480023384.01.T01:intron 30.0%
! TTTAAAATTACTCACCTGCA+AGG - Chr4:84498911-84498930 None:intergenic 30.0%
!! CATGGTTCAATTGATTTGAT+CGG - Chr4:84499520-84499539 None:intergenic 30.0%
!! TGATATTTTGTTTCAGGGTT+GGG + Chr4:84498314-84498333 MsG0480023384.01.T01:intron 30.0%
!! TTTGCCTTTTTAATTGTTGC+AGG + Chr4:84499799-84499818 MsG0480023384.01.T01:intron 30.0%
!!! AGTTGTTTTTGCTCTTTGTT+TGG + Chr4:84499233-84499252 MsG0480023384.01.T01:intron 30.0%
ACAGTATAAAGCCACAATTG+GGG + Chr4:84498840-84498859 MsG0480023384.01.T01:CDS 35.0%
ATCCAAGTTACATTGCAGTT+GGG + Chr4:84499380-84499399 MsG0480023384.01.T01:intron 35.0%
CAACAGTATAAAGCCACAAT+TGG + Chr4:84498838-84498857 MsG0480023384.01.T01:CDS 35.0%
CAGAAAGAGAACTTTGCTTA+AGG + Chr4:84498167-84498186 MsG0480023384.01.T01:CDS 35.0%
CTTGTTCCCAAGTAATACAA+AGG - Chr4:84499663-84499682 None:intergenic 35.0%
CTTTGTATTACTTGGGAACA+AGG + Chr4:84499661-84499680 MsG0480023384.01.T01:CDS 35.0%
GCATTTCCCTTTGTATTACT+TGG + Chr4:84499653-84499672 MsG0480023384.01.T01:CDS 35.0%
GTGAACACTTTGCATGAAAA+AGG - Chr4:84499777-84499796 None:intergenic 35.0%
TACAATGGTATGGCAGATTT+GGG + Chr4:84499010-84499029 MsG0480023384.01.T01:intron 35.0%
TGAAAATGCCAAATGGATAC+TGG - Chr4:84498357-84498376 None:intergenic 35.0%
TTACAATGGTATGGCAGATT+TGG + Chr4:84499009-84499028 MsG0480023384.01.T01:intron 35.0%
TTGATGAACCAGTATCCATT+TGG + Chr4:84498346-84498365 MsG0480023384.01.T01:intron 35.0%
TTGCATACTCAAAATCGGAT+CGG - Chr4:84499557-84499576 None:intergenic 35.0%
! GTTGGCAATCTTTTTACTTG+TGG + Chr4:84498522-84498541 MsG0480023384.01.T01:intron 35.0%
! TGGCAATCTTTTTACTTGTG+GGG + Chr4:84498524-84498543 MsG0480023384.01.T01:intron 35.0%
! TTTGAAACCTCTGCAAAAGA+GGG + Chr4:84499875-84499894 MsG0480023384.01.T01:CDS 35.0%
!! AACAAGGTTGATATAGATGG+TGG + Chr4:84499677-84499696 MsG0480023384.01.T01:CDS 35.0%
!! CAATTGTGGCTTTATACTGT+TGG - Chr4:84498840-84498859 None:intergenic 35.0%
!! CTGATATTTTGTTTCAGGGT+TGG + Chr4:84498313-84498332 MsG0480023384.01.T01:intron 35.0%
!! TAACTAGCTTTCGTTTCAAC+CGG - Chr4:84499354-84499373 None:intergenic 35.0%
!! TGTCCAATAGATCCGTTTTT+AGG + Chr4:84498583-84498602 MsG0480023384.01.T01:intron 35.0%
!!! TTTTGAAACCTCTGCAAAAG+AGG + Chr4:84499874-84499893 MsG0480023384.01.T01:CDS 35.0%
AAAATGCAGCTCCAAGACTA+TGG - Chr4:84499058-84499077 None:intergenic 40.0%
AACAAAATCAGCCCCAATTG+TGG - Chr4:84498854-84498873 None:intergenic 40.0%
AACCCAACTGCAATGTAACT+TGG - Chr4:84499385-84499404 None:intergenic 40.0%
AATACAAAGGGAAATGCCTC+AGG - Chr4:84499650-84499669 None:intergenic 40.0%
AATTGATCTCAGGCAGATAC+AGG + Chr4:84499620-84499639 MsG0480023384.01.T01:intron 40.0%
AGGTTACAGAGAAGAAAGCT+AGG + Chr4:84499819-84499838 MsG0480023384.01.T01:intron 40.0%
ATCAAATGGAACGGCTTAAC+CGG + Chr4:84499332-84499351 MsG0480023384.01.T01:intron 40.0%
GATCCAAGTTACATTGCAGT+TGG + Chr4:84499379-84499398 MsG0480023384.01.T01:intron 40.0%
GCATGATGACTTTCTTAAGC+AGG + Chr4:84499151-84499170 MsG0480023384.01.T01:intron 40.0%
GGTTACAGAGAAGAAAGCTA+GGG + Chr4:84499820-84499839 MsG0480023384.01.T01:intron 40.0%
TAACATACCCACTATCTCCA+AGG - Chr4:84498200-84498219 None:intergenic 40.0%
TCATTGTCCTTGGAGATAGT+GGG + Chr4:84498190-84498209 MsG0480023384.01.T01:CDS 40.0%
TGATAAACTCGTAACCTTGC+AGG + Chr4:84498894-84498913 MsG0480023384.01.T01:CDS 40.0%
TTGCTTAAGGTCATTGTCCT+TGG + Chr4:84498180-84498199 MsG0480023384.01.T01:CDS 40.0%
! ATCCATCATAATTTGCCAGC+TGG - Chr4:84498564-84498583 None:intergenic 40.0%
! TTGGAGCTGCATTTTACAGA+GGG + Chr4:84499063-84499082 MsG0480023384.01.T01:CDS 40.0%
! TTTTTACTTGTGGGGAACAG+TGG + Chr4:84498532-84498551 MsG0480023384.01.T01:intron 40.0%
!! ACCAAATTTGGTGCATGAGT+TGG + Chr4:84498504-84498523 MsG0480023384.01.T01:intron 40.0%
!! AGATGGTGGAAACAGTAGAA+GGG + Chr4:84499691-84499710 MsG0480023384.01.T01:CDS 40.0%
!! GGGAACAAGGTTGATATAGA+TGG + Chr4:84499674-84499693 MsG0480023384.01.T01:CDS 40.0%
!! TAGATGGTGGAAACAGTAGA+AGG + Chr4:84499690-84499709 MsG0480023384.01.T01:CDS 40.0%
!! TGGGGCTGATTTTGTTACAA+AGG + Chr4:84498858-84498877 MsG0480023384.01.T01:CDS 40.0%
AATCGGATCGGTGAGACTTT+CGG - Chr4:84499545-84499564 None:intergenic 45.0%
CAGAGAAGAAAGCTAGGGAA+TGG + Chr4:84499825-84499844 MsG0480023384.01.T01:CDS 45.0%
CAGGAAAGGTTCCATAGTCT+TGG + Chr4:84499044-84499063 MsG0480023384.01.T01:CDS 45.0%
GCCAACTCATGCACCAAATT+TGG - Chr4:84498508-84498527 None:intergenic 45.0%
GTCATTGTCCTTGGAGATAG+TGG + Chr4:84498189-84498208 MsG0480023384.01.T01:CDS 45.0%
GTCCAGCTGGCAAATTATGA+TGG + Chr4:84498559-84498578 MsG0480023384.01.T01:intron 45.0%
TAGGGAATGGTGTGCTTCTA+GGG + Chr4:84499838-84499857 MsG0480023384.01.T01:CDS 45.0%
! AGGGGCAGATTGTTGTGTTT+TGG + Chr4:84499082-84499101 MsG0480023384.01.T01:CDS 45.0%
! ATTGTAGCCCTCTTTTGCAG+AGG - Chr4:84499885-84499904 None:intergenic 45.0%
! CTTGGAGCTGCATTTTACAG+AGG + Chr4:84499062-84499081 MsG0480023384.01.T01:CDS 45.0%
! TGGAGCTGCATTTTACAGAG+GGG + Chr4:84499064-84499083 MsG0480023384.01.T01:CDS 45.0%
!! AATAATTGTAAAAAATAAAA+AGG - Chr4:84499732-84499751 None:intergenic 5.0%
!!! AAATTTTTAACATAAAATTA+TGG + Chr4:84498732-84498751 MsG0480023384.01.T01:intron 5.0%
AGGGAATGGTGTGCTTCTAG+GGG + Chr4:84499839-84499858 MsG0480023384.01.T01:CDS 50.0%
ATCGGATCGGTGAGACTTTC+GGG - Chr4:84499544-84499563 None:intergenic 50.0%
CTAGGGAATGGTGTGCTTCT+AGG + Chr4:84499837-84499856 MsG0480023384.01.T01:CDS 50.0%
! GATTTGGGATACTGCAGGAC+AGG + Chr4:84499025-84499044 MsG0480023384.01.T01:intron 50.0%
! TGGCAGATTTGGGATACTGC+AGG + Chr4:84499020-84499039 MsG0480023384.01.T01:intron 50.0%
GAACAGTGGTTCAGTCCAGC+TGG + Chr4:84498546-84498565 MsG0480023384.01.T01:intron 55.0%
GGCAGATACAGGCAATCCTG+AGG + Chr4:84499631-84499650 MsG0480023384.01.T01:intron 55.0%
GGGATACTGCAGGACAGGAA+AGG + Chr4:84499030-84499049 MsG0480023384.01.T01:CDS 55.0%
! TCGGTGAGACTTTCGGGTCA+TGG - Chr4:84499538-84499557 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 84498147 84499970 84498147 ID=MsG0480023385.01;Name=MsG0480023385.01
Chr4 mRNA 84498147 84499970 84498147 ID=MsG0480023385.01.T01;Parent=MsG0480023385.01;Name=MsG0480023385.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|5|0|157
Chr4 exon 84498147 84498211 84498147 ID=MsG0480023385.01.T01:exon:2697;Parent=MsG0480023385.01.T01
Chr4 exon 84498816 84498915 84498816 ID=MsG0480023385.01.T01:exon:2698;Parent=MsG0480023385.01.T01
Chr4 exon 84499026 84499103 84499026 ID=MsG0480023385.01.T01:exon:2699;Parent=MsG0480023385.01.T01
Chr4 exon 84499632 84499712 84499632 ID=MsG0480023385.01.T01:exon:2700;Parent=MsG0480023385.01.T01
Chr4 exon 84499821 84499970 84499821 ID=MsG0480023385.01.T01:exon:2701;Parent=MsG0480023385.01.T01
Chr4 CDS 84498147 84498211 84498147 ID=MsG0480023385.01.T01:cds;Parent=MsG0480023385.01.T01
Chr4 CDS 84498816 84498915 84498816 ID=MsG0480023385.01.T01:cds;Parent=MsG0480023385.01.T01
Chr4 CDS 84499026 84499103 84499026 ID=MsG0480023385.01.T01:cds;Parent=MsG0480023385.01.T01
Chr4 CDS 84499632 84499712 84499632 ID=MsG0480023385.01.T01:cds;Parent=MsG0480023385.01.T01
Chr4 CDS 84499821 84499970 84499821 ID=MsG0480023385.01.T01:cds;Parent=MsG0480023385.01.T01
Gene Sequence

>MsG0480023385.01.T01

ATGGATATTTCTAGTTCACACAGAAAGAGAACTTTGCTTAAGGTCATTGTCCTTGGAGATAGTGGATATGTGTACAAAAAATTTAGCCAACAGTATAAAGCCACAATTGGGGCTGATTTTGTTACAAAGGAGCTGCTAGTTGATGATAAACTCGTAACCTTGCAGATTTGGGATACTGCAGGACAGGAAAGGTTCCATAGTCTTGGAGCTGCATTTTACAGAGGGGCAGATTGTTGTGTTTTGGCAGATACAGGCAATCCTGAGGCATTTCCCTTTGTATTACTTGGGAACAAGGTTGATATAGATGGTGGAAACAGTAGAAGGGTTACAGAGAAGAAAGCTAGGGAATGGTGTGCTTCTAGGGGTAACATACCATATTTTGAAACCTCTGCAAAAGAGGGCTACAATGTTGATGATGCATTTTTATGTGTTGCTAAAGTTGCATCAGAAAATGAACACGATTTAGACATGTAA

Protein sequence

>MsG0480023385.01.T01

MDISSSHRKRTLLKVIVLGDSGYVYKKFSQQYKATIGADFVTKELLVDDKLVTLQIWDTAGQERFHSLGAAFYRGADCCVLADTGNPEAFPFVLLGNKVDIDGGNSRRVTEKKAREWCASRGNIPYFETSAKEGYNVDDAFLCVAKVASENEHDLDM*