AlfalfaGEDB | Msa0837590

M. sativa cultivar zhongmu-4 / Msa0837590

KEGG: K01792
GO: -
PFAM: PF01263.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837590	XP_003612039.1	98.077	312	6	0	1	312	1	312	0.0	640

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837590	sp\|Q40784\|AAPC_CENCI	34.799	273	157	8	50	303	33	303	2.05e-37	139

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837590	G7KEX7	98.077	312	6	0	1	312	1	312	0.0	640

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0837590	0.865181	7.114884e-65	-8.615850e-47
Msa0001420	Msa0837590	0.842010	3.357663e-58	-8.615850e-47
Msa0001460	Msa0837590	0.802942	4.414404e-49	-8.615850e-47
Msa0001540	Msa0837590	0.815409	9.384924e-52	-8.615850e-47
Msa0002060	Msa0837590	0.826256	2.997774e-54	-8.615850e-47
Msa0003470	Msa0837590	0.812020	5.231574e-51	-8.615850e-47
Msa0005160	Msa0837590	0.840268	9.633567e-58	-8.615850e-47
Msa0006050	Msa0837590	0.851475	8.665434e-61	-8.615850e-47
Msa0006580	Msa0837590	0.828912	6.905240e-55	-8.615850e-47
Msa0007160	Msa0837590	0.811771	5.924867e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837590	MtrunA17_Chr5g0404381	98.077	312	6	0	1	312	1	312	0.0	640
Msa0837590	MtrunA17_Chr5g0396951	33.218	289	174	7	41	312	15	301	2.39e-43	150
Msa0837590	MtrunA17_Chr2g0298101	33.449	287	170	7	43	310	14	298	2.14e-40	143
Msa0837590	MtrunA17_Chr6g0449291	32.056	287	177	7	39	310	1	284	1.62e-36	132
Msa0837590	MtrunA17_Chr7g0275331	31.379	290	179	7	40	311	13	300	5.54e-36	131
Msa0837590	MtrunA17_Chr4g0049381	31.673	281	172	7	50	312	23	301	2.76e-34	127
Msa0837590	MtrunA17_Chr4g0000441	44.086	93	51	1	36	127	21	113	3.33e-19	82.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0837590	AT5G66530.1	78.261	276	60	0	37	312	32	307	6.80e-167	466
Msa0837590	AT5G66530.2	78.261	276	60	0	37	312	32	307	6.80e-167	466
Msa0837590	AT5G66530.3	78.261	276	60	0	37	312	32	307	6.80e-167	466
Msa0837590	AT5G66530.4	78.261	276	60	0	37	312	4	279	2.44e-166	463
Msa0837590	AT4G23730.1	34.286	280	163	8	52	312	26	303	1.56e-40	144
Msa0837590	AT3G01590.1	33.798	287	164	8	45	312	8	287	2.09e-40	143
Msa0837590	AT3G01590.2	33.798	287	164	8	45	312	8	287	2.09e-40	143
Msa0837590	AT5G57330.1	32.653	294	165	8	42	310	9	294	4.94e-40	142
Msa0837590	AT4G23730.3	33.916	286	162	9	52	312	26	309	8.79e-39	139
Msa0837590	AT5G14500.1	31.884	276	171	6	52	312	14	287	4.40e-38	137

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Find 232 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAACTCTGCAATAT+GGG	0.367824	5_4:+11627208	Msa0837580:CDS
AAAAGAAGGTCTTTGCCATT+AGG	0.336299	5_4:+11630607	None:intergenic
AAAATGTGGAAATGTAGAGA+TGG	0.581375	5_4:+11626548	Msa0837580:CDS
AAAATTTATCTGGCGAGAGT+AGG	0.565092	5_4:+11627572	None:intergenic
AAACACAATCTACAAATCCT+GGG	0.586977	5_4:+11628579	None:intergenic
AAACCAAACTCTGCAATATG+GGG	0.605962	5_4:+11627209	Msa0837580:CDS
AAACCTGTTATGGAACATTA+TGG	0.353796	5_4:+11627113	Msa0837580:CDS
AAATAATTGATAGGCCGGTT+CGG	0.458970	5_4:+11627887	None:intergenic
AAATGTAGCTTTGCATTGTG+TGG	0.577386	5_4:+11627659	None:intergenic
AAATTGCATAGACACGAAGC+AGG	0.528261	5_4:-11626437	Msa0837590:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAGAAAAAATGGCGA+TGG	-	chr5_4:11626103-11626122	Msa0837590:three_prime_UTR	30.0%
GCTCAATTGAAAGAAAACTA+TGG	+	chr5_4:11626202-11626221	Msa0837580:CDS	30.0%
CATCGCAAAATCAAAATTGT+TGG	+	chr5_4:11626267-11626286	Msa0837580:CDS	30.0%
GAAGCAGTAATTAACCTTAT+TGG	+	chr5_4:11626510-11626529	Msa0837580:CDS	30.0%
TGTCACTAATCTATTATGTC+CGG	+	chr5_4:11626573-11626592	Msa0837580:CDS	30.0%
TTGAAAATGTATCTGACACA+TGG	+	chr5_4:11626620-11626639	Msa0837580:CDS	30.0%
TTATTTACTAAGGCTCTGTT+TGG	-	chr5_4:11626674-11626693	Msa0837590:three_prime_UTR	30.0%
TAAACACTTGTGAGATTGTT+TGG	+	chr5_4:11626841-11626860	Msa0837580:CDS	30.0%
CAGCTTTCATGCTTTATATA+AGG	-	chr5_4:11627389-11627408	Msa0837590:three_prime_UTR	30.0%
TGCTTTATATAAGGTTGTCA+AGG	-	chr5_4:11627398-11627417	Msa0837590:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	11625960	11631119	11625960	ID=Msa0837590;Name=Msa0837590
chr5_4	mRNA	11625960	11631119	11625960	ID=Msa0837590-mRNA-1;Parent=Msa0837590;Name=Msa0837590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=156\|1\|1\|1\|1\|1\|9\|2088\|312
chr5_4	exon	11625960	11628113	11625960	ID=Msa0837590-mRNA-1:exon:5094;Parent=Msa0837590-mRNA-1
chr5_4	exon	11628341	11628422	11628341	ID=Msa0837590-mRNA-1:exon:5093;Parent=Msa0837590-mRNA-1
chr5_4	exon	11628509	11628616	11628509	ID=Msa0837590-mRNA-1:exon:5092;Parent=Msa0837590-mRNA-1
chr5_4	exon	11629113	11629210	11629113	ID=Msa0837590-mRNA-1:exon:5091;Parent=Msa0837590-mRNA-1
chr5_4	exon	11629464	11629562	11629464	ID=Msa0837590-mRNA-1:exon:5090;Parent=Msa0837590-mRNA-1
chr5_4	exon	11629669	11629806	11629669	ID=Msa0837590-mRNA-1:exon:5089;Parent=Msa0837590-mRNA-1
chr5_4	exon	11630081	11630132	11630081	ID=Msa0837590-mRNA-1:exon:5088;Parent=Msa0837590-mRNA-1
chr5_4	exon	11630565	11630789	11630565	ID=Msa0837590-mRNA-1:exon:5087;Parent=Msa0837590-mRNA-1
chr5_4	exon	11630893	11631119	11630893	ID=Msa0837590-mRNA-1:exon:5086;Parent=Msa0837590-mRNA-1
chr5_4	five_prime_UTR	11630964	11631119	11630964	ID=Msa0837590-mRNA-1:five_prime_utr;Parent=Msa0837590-mRNA-1
chr5_4	CDS	11630893	11630963	11630893	ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4	CDS	11630565	11630789	11630565	ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4	CDS	11630081	11630132	11630081	ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4	CDS	11629669	11629806	11629669	ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4	CDS	11629464	11629562	11629464	ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4	CDS	11629113	11629210	11629113	ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4	CDS	11628509	11628616	11628509	ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4	CDS	11628341	11628422	11628341	ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4	CDS	11628048	11628113	11628048	ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4	three_prime_UTR	11625960	11628047	11625960	ID=Msa0837590-mRNA-1:three_prime_utr;Parent=Msa0837590-mRNA-1

Gene Sequence

>Msa0837590

ATGGCGATGGCTTCAATGGCATTCTGTGGTGTCAACACAGTTACCTTTCACAACCGTGGCCGATACAACAGTGGAATTGCATTTGCAAGTTTGGGAAACAAAGAAAAAACTACTTTGGGAGTGAAAGTTACGGAAGGTGAAGGAAATTTGCCTAAACTCGTTCTCACTTCTCCAGCTGGTAGTGAGGCTGAGATATATTTGTTTGGTGGTTGCATTACTTCTTGGAAAGTTCCTAATGGCAAAGACCTTCTTTTTGTTCGTCCCGACGCCGTTTATAATAAGAAGAAACCAATAAGTGGAGGTATCCCACATTGCTTTCCACAGTTTGGTCCTGGTGCAATTCAGCAGCATGGATTTGCAAGGAATTTGGATTGGACTGTTGGTGATTCTGAGAATGTTGAGGGAAATCCTGTTGTAACTCTGGAACTGAAGGATGATACATATAGTCGTGCTATGTGGGATTTCAGCTTTCATGCTTTATATAAGGTCACACTAAATGCTAAAAGTCTTTCGACTGAGTTAAAAGTTAAAAATACTGACAATAAGGCATTCTCATTCAATACCGCCCTGCACACATACTTTCGGGCTTCTGTAAGTGGTGCATCAGTTAAGGGGTTAAAAGGTTGCAAAACTCTGAACAAACATCCAGATCCTAATAATCCAATTGAGGGTAGCGAAGAAAGGGATGTGGTCACTTTCCCAGGATTTGTAGATTGTGTTTATCTTAACGCTTCAGATGAGTTGCAGCTTGATAATGGCTTGGGTGATATAATTTCTATCAAGAACACGAACTGGTCAGATGCGGTGTTGTGGAATCCTCATCTTCAAATGGAAGCATGTTACAAAGATTTTGTTTGTGTTGAAAATGCTAAGATTGGAAATGTCCAGCTCGAGCCTGAACAAACTTGGACAGCTGTGCAGCATCTTACCATTGCATGA

Protein sequence

>Msa0837590

MAMASMAFCGVNTVTFHNRGRYNSGIAFASLGNKEKTTLGVKVTEGEGNLPKLVLTSPAGSEAEIYLFGGCITSWKVPNGKDLLFVRPDAVYNKKKPISGGIPHCFPQFGPGAIQQHGFARNLDWTVGDSENVEGNPVVTLELKDDTYSRAMWDFSFHALYKVTLNAKSLSTELKVKNTDNKAFSFNTALHTYFRASVSGASVKGLKGCKTLNKHPDPNNPIEGSEERDVVTFPGFVDCVYLNASDELQLDNGLGDIISIKNTNWSDAVLWNPHLQMEACYKDFVCVENAKIGNVQLEPEQTWTAVQHLTIA*