AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0837590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837590 MtrunA17_Chr5g0404381 98.077 312 6 0 1 312 1 312 0.0 640
Msa0837590 MtrunA17_Chr5g0396951 33.218 289 174 7 41 312 15 301 2.39e-43 150
Msa0837590 MtrunA17_Chr2g0298101 33.449 287 170 7 43 310 14 298 2.14e-40 143
Msa0837590 MtrunA17_Chr6g0449291 32.056 287 177 7 39 310 1 284 1.62e-36 132
Msa0837590 MtrunA17_Chr7g0275331 31.379 290 179 7 40 311 13 300 5.54e-36 131
Msa0837590 MtrunA17_Chr4g0049381 31.673 281 172 7 50 312 23 301 2.76e-34 127
Msa0837590 MtrunA17_Chr4g0000441 44.086 93 51 1 36 127 21 113 3.33e-19 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837590 AT5G66530.1 78.261 276 60 0 37 312 32 307 6.80e-167 466
Msa0837590 AT5G66530.2 78.261 276 60 0 37 312 32 307 6.80e-167 466
Msa0837590 AT5G66530.3 78.261 276 60 0 37 312 32 307 6.80e-167 466
Msa0837590 AT5G66530.4 78.261 276 60 0 37 312 4 279 2.44e-166 463
Msa0837590 AT4G23730.1 34.286 280 163 8 52 312 26 303 1.56e-40 144
Msa0837590 AT3G01590.1 33.798 287 164 8 45 312 8 287 2.09e-40 143
Msa0837590 AT3G01590.2 33.798 287 164 8 45 312 8 287 2.09e-40 143
Msa0837590 AT5G57330.1 32.653 294 165 8 42 310 9 294 4.94e-40 142
Msa0837590 AT4G23730.3 33.916 286 162 9 52 312 26 309 8.79e-39 139
Msa0837590 AT5G14500.1 31.884 276 171 6 52 312 14 287 4.40e-38 137
Msa0837590 AT4G23730.2 34.701 268 154 8 64 312 3 268 4.69e-38 136
Msa0837590 AT4G25900.1 31.834 289 167 10 44 312 34 312 2.36e-37 135
Msa0837590 AT5G14500.2 29.236 301 171 7 52 312 14 312 1.78e-32 123
Msa0837590 AT3G61610.2 31.408 277 170 7 52 310 19 293 2.01e-32 122
Msa0837590 AT3G61610.1 31.408 277 170 7 52 310 25 299 2.47e-32 122

Find 232 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATTTCTTGGTTCTTAA+TGG 0.134775 5_4:+11625966 Msa0837580:intron
GAAGCAGTAATTAACCTTAT+TGG 0.152754 5_4:+11630550 None:intergenic
CTACCCTCAATTGGATTATT+AGG 0.159296 5_4:+11629122 None:intergenic
TCTCGCTTCCAAATGCTATT+TGG 0.165282 5_4:-11627971 Msa0837590:three_prime_UTR
AAGCTACAATTTCCTGCTTT+TGG 0.212182 5_4:-11627934 Msa0837590:three_prime_UTR
CTTCGTGTCTATGCAATTTC+AGG 0.217546 5_4:+11626441 Msa0837580:CDS
GCATGGATTTGCAAGGAATT+TGG 0.218398 5_4:-11629785 Msa0837590:CDS
ACTCGTGGGCAACACCATTT+AGG 0.222811 5_4:-11627445 Msa0837590:three_prime_UTR
TTATTTATATTTATTATATA+TGG 0.233045 5_4:+11631038 None:intergenic
CAAATTATCAAAAGGGGTTT+TGG 0.241386 5_4:+11626390 Msa0837580:CDS
CGGAGGATAGTTCTATTTCT+TGG 0.243268 5_4:+11625956 Msa0837580:intron
TAAAACCAAACTCTGCAATA+TGG 0.250839 5_4:+11627207 Msa0837580:CDS
TGGATGCATGGTAGACCTTC+TGG 0.256819 5_4:+11627133 Msa0837580:CDS
CAGCTTTCATGCTTTATATA+AGG 0.258159 5_4:-11629668 Msa0837590:intron
TGGAATTGCATTTGCAAGTT+TGG 0.261065 5_4:-11630767 Msa0837590:CDS
TCTATTTCTTGGTTCTTAAT+GGG 0.263148 5_4:+11625967 Msa0837580:intron
CCTCACGAGATATTGTTTCT+TGG 0.274035 5_4:+11626502 Msa0837580:CDS
GCATCAGTTAAGGGGTTAAA+AGG 0.284648 5_4:-11629173 Msa0837590:CDS
CGCCCTGCACACATACTTTC+GGG 0.284931 5_4:-11629463 Msa0837590:intron
CATCCATAATGTTCCATAAC+AGG 0.303096 5_4:-11627116 Msa0837590:three_prime_UTR
GTTGTATTGTGATTGAAATT+TGG 0.306186 5_4:-11630977 Msa0837590:five_prime_UTR
GTTGCCCACGAGTTCTTTGC+TGG 0.310243 5_4:+11627455 Msa0837580:CDS
TGCAGTACTATCACCCTAAA+TGG 0.313791 5_4:+11627431 Msa0837580:CDS
TAATTCCTGATTTCTGCATT+TGG 0.314259 5_4:-11626983 Msa0837590:three_prime_UTR
GGTTCTACATTTGCTATGTT+TGG 0.315155 5_4:-11628014 Msa0837590:three_prime_UTR
TTGCAAGCAGATGATATGTT+AGG 0.317577 5_4:+11627528 None:intergenic
GATGAGAATGAAAATTTATC+TGG 0.317815 5_4:+11627562 None:intergenic
GGAATTGCATTTGCAAGTTT+GGG 0.322593 5_4:-11630766 Msa0837590:CDS
CTTTCAGCATGTGCAGGTCT+TGG 0.327570 5_4:+11626732 Msa0837580:CDS
TTGGAGAGATGTTCAAATAT+AGG 0.333895 5_4:+11626036 Msa0837580:CDS
AAAAGAAGGTCTTTGCCATT+AGG 0.336299 5_4:+11630607 None:intergenic
GATCCCCATATTGCAGAGTT+TGG 0.336854 5_4:-11627212 Msa0837590:three_prime_UTR
CGATTTAATTATATCCAAAC+AGG 0.341451 5_4:-11627618 Msa0837590:three_prime_UTR
CCACATTGCTTTCCACAGTT+TGG 0.343104 5_4:-11630100 Msa0837590:CDS
GACTCGTACCCGCGGAAATT+CGG 0.344610 5_4:+11631090 None:intergenic
CCATGATCGTTGGCTTTGTT+AGG 0.349142 5_4:+11626622 Msa0837580:CDS
CTTGAGCTTGGCAAAGAGAT+TGG 0.350647 5_4:+11627266 Msa0837580:CDS
AAACCTGTTATGGAACATTA+TGG 0.353796 5_4:+11627113 Msa0837580:CDS
TTATAACATGAAACCTGTTA+TGG 0.354136 5_4:+11627103 Msa0837580:CDS
CTTTCTTCGCTACCCTCAAT+TGG 0.357618 5_4:+11629113 None:intergenic
TATACATGGACTGCGATAAT+TGG 0.358444 5_4:+11626912 Msa0837580:CDS
TTCTATGTCCAAATAGCATT+TGG 0.360732 5_4:+11627963 None:intergenic
GATGAGTTGCAGCTTGATAA+TGG 0.362819 5_4:-11628542 Msa0837590:CDS
CAGTAATCATGCTCTCAAAC+AGG 0.363401 5_4:-11627079 Msa0837590:three_prime_UTR
TTGGTGGTTGCATTACTTCT+TGG 0.364108 5_4:-11630636 Msa0837590:CDS
AAAACCAAACTCTGCAATAT+GGG 0.367824 5_4:+11627208 Msa0837580:CDS
ATAAGAGCACAACCCAAAAC+TGG 0.369409 5_4:-11626816 Msa0837590:three_prime_UTR
AAGGGTCTGCTAAATCTTCC+AGG 0.371042 5_4:+11627407 Msa0837580:CDS
CCGCCCTGCACACATACTTT+CGG 0.372782 5_4:-11629464 Msa0837590:CDS
TGCTTTCCACAGTTTGGTCC+TGG 0.376361 5_4:-11630094 Msa0837590:CDS
TGTAAGTGGTGCATCAGTTA+AGG 0.379288 5_4:-11629183 Msa0837590:CDS
TGGTTTCTTCTTATTATAAA+CGG 0.386086 5_4:+11630570 None:intergenic
CTACAGCAAATGCTGGTTGC+CGG 0.386630 5_4:+11626675 Msa0837580:CDS
TGACGGCCGGTATATTCATT+TGG 0.391589 5_4:+11627319 Msa0837580:CDS
CTGTTTGGATATAATTAAAT+CGG 0.394862 5_4:+11627619 None:intergenic
ACTTCTTGGAAAGTTCCTAA+TGG 0.402094 5_4:-11630622 Msa0837590:CDS
TCAATTGGATTATTAGGATC+TGG 0.402876 5_4:+11629128 None:intergenic
TCCATGCTCAAATTATCAAA+AGG 0.404420 5_4:+11626382 Msa0837580:CDS
TGCAGCTACTCCAACTCAAT+GGG 0.405401 5_4:+11625995 Msa0837580:intron
ATATACCGGCCGTCATGATC+AGG 0.405563 5_4:-11627311 Msa0837590:three_prime_UTR
GGAGAAGTGAGAACGAGTTT+AGG 0.407959 5_4:+11630688 None:intergenic
GTAAGTGGTGCATCAGTTAA+GGG 0.409071 5_4:-11629182 Msa0837590:CDS
AAGAGGATAACAATATTAAC+AGG 0.409459 5_4:-11631067 Msa0837590:five_prime_UTR
TAAACACAATCTACAAATCC+TGG 0.409510 5_4:+11628578 None:intergenic
ATGCTGAAAGCGAACAGCTT+AGG 0.411570 5_4:-11626719 Msa0837590:three_prime_UTR
GCAAGCATTCATGCTGCAGC+TGG 0.411902 5_4:+11627341 Msa0837580:CDS
ACATATGCATCAATGGAGTT+TGG 0.415076 5_4:+11626138 Msa0837580:CDS
TCTTGGAATACAATGATTGA+TGG 0.417639 5_4:+11626519 Msa0837580:CDS
AGCTCGAGCCTGAACAAACT+TGG 0.418791 5_4:-11628078 Msa0837590:CDS
CACCACTAGCCAACTATTAG+TGG 0.418875 5_4:+11627812 None:intergenic
AGGGATGTGGTCACTTTCCC+AGG 0.421549 5_4:-11628596 Msa0837590:CDS
TGAGGGAAGCAAATCGAATA+GGG 0.423095 5_4:-11626484 Msa0837590:three_prime_UTR
TAGACATGTCATACATTTCT+CGG 0.424455 5_4:-11627499 Msa0837590:three_prime_UTR
CAACTTACTGAACACTAGTA+AGG 0.428804 5_4:-11626874 Msa0837590:three_prime_UTR
TTCATGCTGCAGCTGGAGAA+TGG 0.431186 5_4:+11627348 Msa0837580:CDS
TTCAACCAAATGCAGAAATC+AGG 0.433264 5_4:+11626978 Msa0837580:CDS
ATCGTTGGCTTTGTTAGGAC+AGG 0.434232 5_4:+11626627 Msa0837580:CDS
GTGAGGGAAGCAAATCGAAT+AGG 0.434677 5_4:-11626485 Msa0837590:three_prime_UTR
TGCTGAAAGCGAACAGCTTA+GGG 0.435009 5_4:-11626718 Msa0837590:three_prime_UTR
CTCGTGGGCAACACCATTTA+GGG 0.435349 5_4:-11627444 Msa0837590:three_prime_UTR
ATAATAAGAAGAAACCAATA+AGG 0.439178 5_4:-11630564 Msa0837590:intron
GTAGACCTTCTGGGTCGTGC+AGG 0.440671 5_4:+11627143 Msa0837580:CDS
TTGCCCACGAGTTCTTTGCT+GGG 0.441349 5_4:+11627456 Msa0837580:CDS
ACAGCTGTCCAAGTTTGTTC+AGG 0.442315 5_4:+11628070 None:intergenic
GGATGCATGGTAGACCTTCT+GGG 0.444058 5_4:+11627134 Msa0837580:CDS
TCATGTGGAACACCATGATC+AGG 0.445132 5_4:+11626214 Msa0837580:CDS
AGGGAAGAGAAGCTTTAGAT+TGG 0.449987 5_4:+11626955 Msa0837580:CDS
CCATGCTCAAATTATCAAAA+GGG 0.450262 5_4:+11626383 Msa0837580:CDS
TTCTCTTCCCTTTCCATGGA+CGG 0.450388 5_4:-11626943 Msa0837590:three_prime_UTR
TTCAGTTCCAGAGTTACAAC+AGG 0.450944 5_4:+11629724 None:intergenic
AAGCTTCTCTTCCCTTTCCA+TGG 0.454030 5_4:-11626947 Msa0837590:three_prime_UTR
TTTACTAAGCCACTAATAGT+TGG 0.455991 5_4:-11627821 Msa0837590:three_prime_UTR
GAGGCTGAGATATATTTGTT+TGG 0.457612 5_4:-11630655 Msa0837590:CDS
TTCTTATTATAAACGGCGTC+GGG 0.458194 5_4:+11630577 None:intergenic
TATTGTCAACTTGTGTCTGA+TGG 0.458911 5_4:-11626100 Msa0837590:three_prime_UTR
AAATAATTGATAGGCCGGTT+CGG 0.458970 5_4:+11627887 None:intergenic
GACACGAAGCAGGGAGTTTG+TGG 0.459300 5_4:-11626427 Msa0837590:three_prime_UTR
AAGATGTTTGTGCAGGTGGC+AGG 0.460192 5_4:-11627246 Msa0837590:three_prime_UTR
TTGGTGCATTGGAGCAAGGC+AGG 0.462062 5_4:+11626751 Msa0837580:CDS
CAAGAGATGACATTCTTCTC+TGG 0.462501 5_4:-11626594 Msa0837590:three_prime_UTR
GATTTGCAAGGAATTTGGAT+TGG 0.464230 5_4:-11629780 Msa0837590:CDS
ACAACCGTGGCCGATACAAC+AGG 0.467453 5_4:-11630892 Msa0837590:intron
GGTGAAGTAAAGCAGATTCA+TGG 0.472717 5_4:+11626057 Msa0837580:CDS
TTGCAGCTACTCCAACTCAA+TGG 0.478532 5_4:+11625994 Msa0837580:intron
CCTAACAAAGCCAACGATCA+TGG 0.480433 5_4:-11626622 Msa0837590:three_prime_UTR
CTATTTCTTGGTTCTTAATG+GGG 0.481883 5_4:+11625968 Msa0837580:intron
ATTGGTGGCTTTGCCGTCCA+TGG 0.483327 5_4:+11626930 Msa0837580:CDS
GTGGAAACGTGGTTCCGAAC+CGG 0.485039 5_4:-11627901 Msa0837590:three_prime_UTR
GGCTTTGCCGTCCATGGAAA+GGG 0.486002 5_4:+11626936 Msa0837580:CDS
AGGAATTTGGATTGGACTGT+TGG 0.486366 5_4:-11629772 Msa0837590:CDS
ATTAACTACATATGCATCAA+TGG 0.487427 5_4:+11626131 Msa0837580:CDS
GCTGAGATATATTTGTTTGG+TGG 0.488082 5_4:-11630652 Msa0837590:CDS
AAGTTTGTTCAGGCTCGAGC+TGG 0.490832 5_4:+11628080 None:intergenic
TGCAAGCAGATGATATGTTA+GGG 0.491690 5_4:+11627529 None:intergenic
CATGCTTCCATTTGAAGATG+AGG 0.495158 5_4:+11628375 None:intergenic
CAGAGAAGAATGTCATCTCT+TGG 0.498603 5_4:+11626595 Msa0837580:CDS
TCATGCTGCAGCTGGAGAAT+GGG 0.499640 5_4:+11627349 Msa0837580:CDS
CTCGTTCTCACTTCTCCAGC+TGG 0.499996 5_4:-11630682 Msa0837590:CDS
GAACATGATTTGAGAAGGAA+AGG 0.501593 5_4:-11626327 Msa0837590:three_prime_UTR
TAACTTACCCTATGCACGTA+TGG 0.502742 5_4:+11626161 Msa0837580:CDS
TGTTCGCTTTCAGCATGTGC+AGG 0.503994 5_4:+11626726 Msa0837580:CDS
GTGTCTTCTACAGCAAATGC+TGG 0.505455 5_4:+11626668 Msa0837580:CDS
ATTTCTCGGACATGTGGGTG+GGG 0.509589 5_4:-11627485 Msa0837590:three_prime_UTR
TATAAACAGGCTTCTGTAAG+TGG 0.509718 5_4:-11629197 Msa0837590:intron
CATTTCTCGGACATGTGGGT+GGG 0.510807 5_4:-11627486 Msa0837590:three_prime_UTR
GTGGAATCCTCATCTTCAAA+TGG 0.511002 5_4:-11628382 Msa0837590:CDS
TACATATAGTCGTGCTATGT+GGG 0.511650 5_4:-11629695 Msa0837590:CDS
TGGTCCTGGTGCAATTCAGC+AGG 0.511929 5_4:-11630080 Msa0837590:intron
TTGCAGCTTGATAATGGCTT+GGG 0.512658 5_4:-11628536 Msa0837590:CDS
GGGAAATCCTGTTGTAACTC+TGG 0.512673 5_4:-11629731 Msa0837590:CDS
GATCCTAATAATCCAATTGA+GGG 0.513845 5_4:-11629125 Msa0837590:CDS
TTTGACAGCATGTAGTCATA+CGG 0.518747 5_4:+11627034 Msa0837580:CDS
GCAGTATAAGTGAACGAAGT+TGG 0.520424 5_4:-11627008 Msa0837590:three_prime_UTR
TTGACAGCATGTAGTCATAC+GGG 0.524859 5_4:+11627035 Msa0837580:CDS
AAATTGCATAGACACGAAGC+AGG 0.528261 5_4:-11626437 Msa0837590:three_prime_UTR
ATCTCAGCCTCACTACCAGC+TGG 0.528382 5_4:+11630667 None:intergenic
AGATCCTAATAATCCAATTG+AGG 0.529404 5_4:-11629126 Msa0837590:CDS
CAATTGAGGGTAGCGAAGAA+AGG 0.537959 5_4:-11629112 Msa0837590:intron
TGGCTTTGCCGTCCATGGAA+AGG 0.538510 5_4:+11626935 Msa0837580:CDS
TAATAGTTGGCTAGTGGTGA+GGG 0.539481 5_4:-11627808 Msa0837590:three_prime_UTR
TTACCCGAAAGTATGTGTGC+AGG 0.539592 5_4:+11629460 None:intergenic
CTTCTTATTATAAACGGCGT+CGG 0.542618 5_4:+11630576 None:intergenic
ATTATACAGAAGATACATGT+TGG 0.543953 5_4:+11627846 None:intergenic
ATGTGCAGGTCTTGGTGCAT+TGG 0.545829 5_4:+11626740 Msa0837580:CDS
CTGCACAAACATCTTGAGCT+TGG 0.546334 5_4:+11627254 Msa0837580:CDS
CACTTCTCCAGCTGGTAGTG+AGG 0.546966 5_4:-11630674 Msa0837590:CDS
AGAAGAAATGTGTCTATACA+TGG 0.548618 5_4:+11626898 Msa0837580:CDS
TCATACATTTCTCGGACATG+TGG 0.549365 5_4:-11627491 Msa0837590:three_prime_UTR
GCTCAAGATGTTTGTGCAGG+TGG 0.554250 5_4:-11627250 Msa0837590:three_prime_UTR
ACATGGACTGCGATAATTGG+TGG 0.556485 5_4:+11626915 Msa0837580:CDS
GTTGCAGCTTGATAATGGCT+TGG 0.558868 5_4:-11628537 Msa0837590:CDS
CTAATAGTTGGCTAGTGGTG+AGG 0.561355 5_4:-11627809 Msa0837590:three_prime_UTR
CAGCCCCAGCAAAGAACTCG+TGG 0.563427 5_4:-11627460 Msa0837590:three_prime_UTR
GGTGATTCTGAGAATGTTGA+GGG 0.564386 5_4:-11629751 Msa0837590:CDS
ACAATGTTACATATGTAATG+AGG 0.564932 5_4:+11627738 None:intergenic
AAAATTTATCTGGCGAGAGT+AGG 0.565092 5_4:+11627572 None:intergenic
ACATTTCTCGGACATGTGGG+TGG 0.565171 5_4:-11627487 Msa0837590:three_prime_UTR
TCTTGGACAACCATGATCGT+TGG 0.565685 5_4:+11626612 Msa0837580:CDS
ATCTTCGTAATGCAGGGATG+TGG 0.567372 5_4:-11628609 Msa0837590:intron
CATGCTCAAATTATCAAAAG+GGG 0.567381 5_4:+11626384 Msa0837580:CDS
CAAGCTCAAGATGTTTGTGC+AGG 0.567522 5_4:-11627253 Msa0837590:three_prime_UTR
GACACAAGTTGACAATAAGC+AGG 0.569030 5_4:+11626106 Msa0837580:CDS
CCAAGAAACAATATCTCGTG+AGG 0.570769 5_4:-11626502 Msa0837590:three_prime_UTR
TTTAACAGCATGGATTTGCA+AGG 0.571252 5_4:-11629792 Msa0837590:intron
TAGACCTTCTGGGTCGTGCA+GGG 0.573876 5_4:+11627144 Msa0837580:CDS
TACTTTGGGAGTGAAAGTTA+CGG 0.574092 5_4:-11630728 Msa0837590:CDS
TGCTTGCCAAATGAATATAC+CGG 0.574218 5_4:-11627325 Msa0837590:three_prime_UTR
AAATGTAGCTTTGCATTGTG+TGG 0.577386 5_4:+11627659 None:intergenic
GTGCAGAACATGATTTGAGA+AGG 0.578813 5_4:-11626332 Msa0837590:three_prime_UTR
TGGTCTGCTCCCCATTGAGT+TGG 0.579605 5_4:-11626005 Msa0837590:three_prime_UTR
CATACGGGGCTAGTTGAAGA+AGG 0.580862 5_4:+11627050 Msa0837580:CDS
AAAATGTGGAAATGTAGAGA+TGG 0.581375 5_4:+11626548 Msa0837580:CDS
GTTTGAATATGCCCTGATCA+TGG 0.582702 5_4:-11626226 Msa0837590:three_prime_UTR
GTATCGGCCACGGTTGTGAA+AGG 0.584436 5_4:+11630898 None:intergenic
AACATGATTTGAGAAGGAAA+GGG 0.586327 5_4:-11626326 Msa0837590:three_prime_UTR
GTGTTCCACATGACAGTGTT+CGG 0.586703 5_4:-11626204 Msa0837590:three_prime_UTR
ATACATATAGTCGTGCTATG+TGG 0.586796 5_4:-11629696 Msa0837590:CDS
AAACACAATCTACAAATCCT+GGG 0.586977 5_4:+11628579 None:intergenic
GGGAATATCCGAATTTCCGC+GGG 0.586990 5_4:-11631098 Msa0837590:five_prime_UTR
GGTCTTGGTGCATTGGAGCA+AGG 0.587977 5_4:+11626747 Msa0837580:CDS
GCTGGTCAGATGCGGTGTTG+TGG 0.588359 5_4:-11628401 Msa0837590:CDS
ATTGATGGATATATAAAATG+TGG 0.588755 5_4:+11626534 Msa0837580:CDS
TACCCGAAAGTATGTGTGCA+GGG 0.589772 5_4:+11629461 None:intergenic
TGTTTGTGTTGAAAATGCTA+AGG 0.590805 5_4:-11628340 Msa0837590:intron
CACGGTTACTGATCATGCAA+TGG 0.591147 5_4:+11628036 None:intergenic
AGGGTGATAGTACTGCATCC+TGG 0.591218 5_4:-11627425 Msa0837590:three_prime_UTR
ACCGCACGACAACCAAAAGC+AGG 0.594748 5_4:+11627922 None:intergenic
CATGTGGAACACCATGATCA+GGG 0.594774 5_4:+11626215 Msa0837580:CDS
GTGCATTGGAGCAAGGCAGG+TGG 0.595340 5_4:+11626754 Msa0837580:CDS
TTAACCTGTTGTATCGGCCA+CGG 0.596643 5_4:+11630888 None:intergenic
TGTTGTAACTCTGGAACTGA+AGG 0.600817 5_4:-11629722 Msa0837590:CDS
TGCCCACGAGTTCTTTGCTG+GGG 0.600883 5_4:+11627457 Msa0837580:CDS
CAAACTGTGGAAAGCAATGT+GGG 0.602638 5_4:+11630101 None:intergenic
GTGAAAGTTACGGAAGGTGA+AGG 0.603482 5_4:-11630718 Msa0837590:CDS
AAACCAAACTCTGCAATATG+GGG 0.605962 5_4:+11627209 Msa0837580:CDS
CCCATGTAGCTGGTCAGATG+CGG 0.613904 5_4:-11628409 Msa0837590:intron
TGAACCCTGATCATGACGGC+CGG 0.615568 5_4:+11627306 Msa0837580:CDS
TATACCGGCCGTCATGATCA+GGG 0.615693 5_4:-11627310 Msa0837590:three_prime_UTR
CCAAACTGTGGAAAGCAATG+TGG 0.616463 5_4:+11630100 None:intergenic
CATACCTGCTGAATTGCACC+AGG 0.622503 5_4:+11630076 None:intergenic
TGGTGATTCTGAGAATGTTG+AGG 0.627538 5_4:-11629752 Msa0837590:CDS
AGGTGGATTCACACCTACAT+TGG 0.631100 5_4:+11626771 Msa0837580:CDS
ACAACCCTGCACGACCCAGA+AGG 0.636249 5_4:-11627148 Msa0837590:three_prime_UTR
AGTAATCATGCTCTCAAACA+GGG 0.636388 5_4:-11627078 Msa0837590:three_prime_UTR
CAAGAAACAATATCTCGTGA+GGG 0.636849 5_4:-11626501 Msa0837590:three_prime_UTR
GGGATTTGATAATTTGCGAG+AGG 0.639122 5_4:-11627788 Msa0837590:three_prime_UTR
CATACATTTCTCGGACATGT+GGG 0.639227 5_4:-11627490 Msa0837590:three_prime_UTR
AGGGTTGTTGAAAGAAGCAA+AGG 0.642613 5_4:+11627163 Msa0837580:CDS
ATCCTCTTGACTCGTACCCG+CGG 0.645360 5_4:+11631082 None:intergenic
TAAGTGGTGCATCAGTTAAG+GGG 0.648460 5_4:-11629181 Msa0837590:CDS
GTTGTCGTGCGGTGGAAACG+TGG 0.651404 5_4:-11627912 Msa0837590:three_prime_UTR
AGCCACTAATAGTTGGCTAG+TGG 0.654669 5_4:-11627814 Msa0837590:three_prime_UTR
ACAGTTACCTTTCACAACCG+TGG 0.654856 5_4:-11630905 Msa0837590:CDS
TATGGAACATTATGGATGCA+TGG 0.658187 5_4:+11627121 Msa0837580:CDS
TGGGAATATCCGAATTTCCG+CGG 0.661158 5_4:-11631099 Msa0837590:five_prime_UTR
AGCCCCAGCAAAGAACTCGT+GGG 0.664328 5_4:-11627459 Msa0837590:three_prime_UTR
GGGAAAGTGTAAGCATTGTG+AGG 0.669895 5_4:-11626306 Msa0837590:three_prime_UTR
TTGGGAGTGAAAGTTACGGA+AGG 0.670040 5_4:-11630724 Msa0837590:CDS
ATGGCTTCAATGGCATTCTG+TGG 0.671150 5_4:-11630935 Msa0837590:CDS
GTTCACCGAACACTGTCATG+TGG 0.671369 5_4:+11626199 Msa0837580:CDS
GATTTAATTATATCCAAACA+GGG 0.671483 5_4:-11627617 Msa0837590:three_prime_UTR
TTCCGCGGGTACGAGTCAAG+AGG 0.680262 5_4:-11631084 Msa0837590:five_prime_UTR
ATAGACATGTATGTCAAATG+TGG 0.683026 5_4:+11626837 Msa0837580:CDS
TTAATTATATCCAAACAGGG+TGG 0.685106 5_4:-11627614 Msa0837590:three_prime_UTR
AATTGCATAGACACGAAGCA+GGG 0.686791 5_4:-11626436 Msa0837590:three_prime_UTR
ATTGCACCAGGACCAAACTG+TGG 0.695286 5_4:+11630088 None:intergenic
GAATTGAACCCTGATCATGA+CGG 0.698554 5_4:+11627302 Msa0837580:CDS
ACATAGCAAATGTAGAACCA+CGG 0.703222 5_4:+11628018 None:intergenic
CATTGCATGATCAGTAACCG+TGG 0.704081 5_4:-11628035 Msa0837590:exon
TGACAGCATGTAGTCATACG+GGG 0.707193 5_4:+11627036 Msa0837580:CDS
GCAGCTACTCCAACTCAATG+GGG 0.716414 5_4:+11625996 Msa0837580:intron
CCGAAAGTATGTGTGCAGGG+CGG 0.758965 5_4:+11629464 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATATTTATTATATA+TGG + chr5_4:11626022-11626041 Msa0837580:CDS 0.0%
!!! TCTTAAATTAAAATTTTACA+TGG - chr5_4:11627995-11628014 Msa0837590:three_prime_UTR 10.0%
!!! TATTACATTGTTATTTACTA+AGG - chr5_4:11626664-11626683 Msa0837590:three_prime_UTR 15.0%
!! AAGAAAATAACATTGAATAA+AGG + chr5_4:11627009-11627028 Msa0837580:CDS 15.0%
!! AATTTGAATAATCACTAAAT+AGG - chr5_4:11627619-11627638 Msa0837590:three_prime_UTR 15.0%
!! ATTTGAATAATCACTAAATA+GGG - chr5_4:11627620-11627639 Msa0837590:three_prime_UTR 15.0%
!! AGTTTACAAACTTTATAAAA+AGG - chr5_4:11628745-11628764 Msa0837590:intron 15.0%
!! GAAAAAACAAATACTATACT+TGG - chr5_4:11626053-11626072 Msa0837590:three_prime_UTR 20.0%
!! ATTTGGAAACAAAGAAAAAA+TGG - chr5_4:11626097-11626116 Msa0837590:three_prime_UTR 20.0%
!! TTATTACAAGCTAGAAAATT+TGG + chr5_4:11626240-11626259 Msa0837580:CDS 20.0%
!! AAACAAAGAAAAAACTACTT+TGG - chr5_4:11626314-11626333 Msa0837590:three_prime_UTR 20.0%
!! AACAAAGAAAAAACTACTTT+GGG - chr5_4:11626315-11626334 Msa0837590:three_prime_UTR 20.0%
!! TGGTTTCTTCTTATTATAAA+CGG + chr5_4:11626490-11626509 Msa0837580:CDS 20.0%
!! ATAATAAGAAGAAACCAATA+AGG - chr5_4:11626493-11626512 Msa0837590:three_prime_UTR 20.0%
!! GAAAATTAATAAGTATCCAA+GGG + chr5_4:11626916-11626935 Msa0837580:CDS 20.0%
!! AGAAAATTAATAAGTATCCA+AGG + chr5_4:11626917-11626936 Msa0837580:CDS 20.0%
!!! GATACTTATTAATTTTCTTC+TGG - chr5_4:11626919-11626938 Msa0837590:three_prime_UTR 20.0%
!!! ACAAAAATTTGATGACTAAT+TGG - chr5_4:11627079-11627098 Msa0837590:three_prime_UTR 20.0%
!! AGTTAAAAATACTGACAATA+AGG - chr5_4:11627555-11627574 Msa0837590:three_prime_UTR 20.0%
!! TTGAATATTATTGTGACATT+TGG - chr5_4:11627657-11627676 Msa0837590:three_prime_UTR 20.0%
!!! ATCATTTTGTCATTATAAAC+AGG - chr5_4:11627847-11627866 Msa0837590:three_prime_UTR 20.0%
!!! TTAAAATTTTACATGGTAAG+TGG - chr5_4:11628002-11628021 Msa0837590:three_prime_UTR 20.0%
!!! GATAATTTGAAATACTTCAT+AGG + chr5_4:11628118-11628137 None:intergenic 20.0%
!! TTCAAATTCATACAAAATGA+TGG + chr5_4:11628221-11628240 None:intergenic 20.0%
!!! TTTATCATTCAATGCAATTT+TGG + chr5_4:11628383-11628402 None:intergenic 20.0%
!! CAAGACAAAAAATAATTGAT+AGG + chr5_4:11629182-11629201 None:intergenic 20.0%
!! CTGTTTGGATATAATTAAAT+CGG + chr5_4:11629441-11629460 None:intergenic 20.0%
!! GATTTAATTATATCCAAACA+GGG - chr5_4:11629440-11629459 Msa0837590:intron 20.0%
!!! ATAAAAATAGATCCAGTTTT+GGG + chr5_4:11630256-11630275 None:intergenic 20.0%
!!! AATAAAAATAGATCCAGTTT+TGG + chr5_4:11630257-11630276 None:intergenic 20.0%
!!! TATTTTGTTTTTACCAATGT+AGG - chr5_4:11630273-11630292 Msa0837590:intron 20.0%
!!! ATTGATGGATATATAAAATG+TGG + chr5_4:11630526-11630545 None:intergenic 20.0%
! AAGAGGATAACAATATTAAC+AGG - chr5_4:11625990-11626009 Msa0837590:three_prime_UTR 25.0%
! GTTGTATTGTGATTGAAATT+TGG - chr5_4:11626080-11626099 Msa0837590:three_prime_UTR 25.0%
!!! TTTTGATTAACCTGTTGTAT+CGG + chr5_4:11626178-11626197 Msa0837580:CDS 25.0%
! ATAAGTGCTTATACTATAAG+TGG + chr5_4:11626717-11626736 Msa0837580:CDS 25.0%
!!! ATTCAATGTTATTTTCTTGC+AGG - chr5_4:11627011-11627030 Msa0837590:three_prime_UTR 25.0%
!!! ATTTGATGACTAATTGGTTT+TGG - chr5_4:11627085-11627104 Msa0837590:three_prime_UTR 25.0%
!! CAACTTTTGTGCTTAATATT+TGG - chr5_4:11627160-11627179 Msa0837590:three_prime_UTR 25.0%
!!! GACTTGTTAAAATGTTTGTT+TGG - chr5_4:11627235-11627254 Msa0837590:three_prime_UTR 25.0%
! CATGAAATTACATCATGATT+TGG + chr5_4:11627482-11627501 Msa0837580:CDS 25.0%
! CAACTCATTCAAACAATAAT+TGG + chr5_4:11627756-11627775 None:intergenic 25.0%
! GTTGAAATTATTCAAATGCA+TGG - chr5_4:11627772-11627791 Msa0837590:three_prime_UTR 25.0%
! ATTAGAAATTAGCCACTAAA+TGG + chr5_4:11628266-11628285 None:intergenic 25.0%
!!! AATGCAATTTTGGTCTTATA+TGG + chr5_4:11628373-11628392 None:intergenic 25.0%
! ACAAAAAATAATTGATAGGC+CGG + chr5_4:11629178-11629197 None:intergenic 25.0%
! ATTATACAGAAGATACATGT+TGG + chr5_4:11629214-11629233 None:intergenic 25.0%
! ACAATGTTACATATGTAATG+AGG + chr5_4:11629322-11629341 None:intergenic 25.0%
! CGATTTAATTATATCCAAAC+AGG - chr5_4:11629439-11629458 Msa0837590:intron 25.0%
! GATGAGAATGAAAATTTATC+TGG + chr5_4:11629498-11629517 None:intergenic 25.0%
! AGAAGCCAGATAAAAAATAA+GGG + chr5_4:11629671-11629690 None:intergenic 25.0%
! TTATAACATGAAACCTGTTA+TGG + chr5_4:11629957-11629976 None:intergenic 25.0%
!!! CATAGCTTTAAAAATCTTGT+AGG - chr5_4:11630486-11630505 Msa0837590:intron 25.0%
! ATTAACTACATATGCATCAA+TGG + chr5_4:11630929-11630948 None:intergenic 25.0%
!! TCTATTTCTTGGTTCTTAAT+GGG + chr5_4:11631093-11631112 None:intergenic 25.0%
!! TTCTATTTCTTGGTTCTTAA+TGG + chr5_4:11631094-11631113 None:intergenic 25.0%
AAACAAAGAAAAAATGGCGA+TGG - chr5_4:11626103-11626122 Msa0837590:three_prime_UTR 30.0%
GCTCAATTGAAAGAAAACTA+TGG + chr5_4:11626202-11626221 Msa0837580:CDS 30.0%
CATCGCAAAATCAAAATTGT+TGG + chr5_4:11626267-11626286 Msa0837580:CDS 30.0%
!!! ATTTTGATTTTGCGATGTAG+TGG - chr5_4:11626270-11626289 Msa0837590:three_prime_UTR 30.0%
GAAGCAGTAATTAACCTTAT+TGG + chr5_4:11626510-11626529 Msa0837580:CDS 30.0%
TGTCACTAATCTATTATGTC+CGG + chr5_4:11626573-11626592 Msa0837580:CDS 30.0%
TTGAAAATGTATCTGACACA+TGG + chr5_4:11626620-11626639 Msa0837580:CDS 30.0%
!! TACATTTTCAATCTGAAGTG+AGG - chr5_4:11626629-11626648 Msa0837590:three_prime_UTR 30.0%
!! ACATTTTCAATCTGAAGTGA+GGG - chr5_4:11626630-11626649 Msa0837590:three_prime_UTR 30.0%
TTATTTACTAAGGCTCTGTT+TGG - chr5_4:11626674-11626693 Msa0837590:three_prime_UTR 30.0%
!!! GTTGTTTTAATAAGCTGTCT+TGG - chr5_4:11626794-11626813 Msa0837590:three_prime_UTR 30.0%
TAAACACTTGTGAGATTGTT+TGG + chr5_4:11626841-11626860 Msa0837580:CDS 30.0%
! GTTCATTTGAGTTTATCTAC+CGG + chr5_4:11626866-11626885 Msa0837580:CDS 30.0%
!!! TTAATTTTCTTCTGGAACAG+TGG - chr5_4:11626927-11626946 Msa0837590:three_prime_UTR 30.0%
CAGCTTTCATGCTTTATATA+AGG - chr5_4:11627389-11627408 Msa0837590:three_prime_UTR 30.0%
TGCTTTATATAAGGTTGTCA+AGG - chr5_4:11627398-11627417 Msa0837590:three_prime_UTR 30.0%
!! TTTCATGCTTTCATTTTTGC+AGG - chr5_4:11627495-11627514 Msa0837590:three_prime_UTR 30.0%
ACATTTGGTATTATGTTTGC+TGG - chr5_4:11627672-11627691 Msa0837590:three_prime_UTR 30.0%
AAAATCATCTGTACTTGGTT+AGG + chr5_4:11627730-11627749 None:intergenic 30.0%
TCAATTGGATTATTAGGATC+TGG + chr5_4:11627932-11627951 None:intergenic 30.0%
AGATCCTAATAATCCAATTG+AGG - chr5_4:11627931-11627950 Msa0837590:three_prime_UTR 30.0%
GATCCTAATAATCCAATTGA+GGG - chr5_4:11627932-11627951 Msa0837590:three_prime_UTR 30.0%
TCTGTAACATACTTTACTTC+TGG - chr5_4:11627968-11627987 Msa0837590:three_prime_UTR 30.0%
CTGTAACATACTTTACTTCT+GGG - chr5_4:11627969-11627988 Msa0837590:three_prime_UTR 30.0%
! CAAAATGATGGAGATAAAGA+AGG + chr5_4:11628209-11628228 None:intergenic 30.0%
GTATCATTTCATCCATTTAG+TGG - chr5_4:11628251-11628270 Msa0837590:intron 30.0%
AAACACAATCTACAAATCCT+GGG + chr5_4:11628481-11628500 None:intergenic 30.0%
TAAACACAATCTACAAATCC+TGG + chr5_4:11628482-11628501 None:intergenic 30.0%
AAAGTGTAAGCACTTGATTT+GGG + chr5_4:11628617-11628636 None:intergenic 30.0%
TGTTTGTGTTGAAAATGCTA+AGG - chr5_4:11628717-11628736 Msa0837590:intron 30.0%
CTATTGTTAATGCTTCAGAT+TGG - chr5_4:11628948-11628967 Msa0837590:intron 30.0%
TTCTATGTCCAAATAGCATT+TGG + chr5_4:11629097-11629116 None:intergenic 30.0%
TTTACTAAGCCACTAATAGT+TGG - chr5_4:11629236-11629255 Msa0837590:intron 30.0%
TTAATTATATCCAAACAGGG+TGG - chr5_4:11629443-11629462 Msa0837590:intron 30.0%
TAGACATGTCATACATTTCT+CGG - chr5_4:11629558-11629577 Msa0837590:intron 30.0%
GAGAAGCCAGATAAAAAATA+AGG + chr5_4:11629672-11629691 None:intergenic 30.0%
AAAACCAAACTCTGCAATAT+GGG + chr5_4:11629852-11629871 None:intergenic 30.0%
TAAAACCAAACTCTGCAATA+TGG + chr5_4:11629853-11629872 None:intergenic 30.0%
!!! TATTGCAGAGTTTGGTTTTA+TGG - chr5_4:11629853-11629872 Msa0837590:intron 30.0%
!!! ATTGCAGAGTTTGGTTTTAT+GGG - chr5_4:11629854-11629873 Msa0837590:intron 30.0%
AAACCTGTTATGGAACATTA+TGG + chr5_4:11629947-11629966 None:intergenic 30.0%
TAATTCCTGATTTCTGCATT+TGG - chr5_4:11630074-11630093 Msa0837590:intron 30.0%
AGAAGAAATGTGTCTATACA+TGG + chr5_4:11630162-11630181 None:intergenic 30.0%
ATAGACATGTATGTCAAATG+TGG + chr5_4:11630223-11630242 None:intergenic 30.0%
! TATTTTATCAGGTTTGATGC+CGG - chr5_4:11630363-11630382 Msa0837590:intron 30.0%
AAAATGTGGAAATGTAGAGA+TGG + chr5_4:11630512-11630531 None:intergenic 30.0%
TCTTGGAATACAATGATTGA+TGG + chr5_4:11630541-11630560 None:intergenic 30.0%
! CAAATTATCAAAAGGGGTTT+TGG + chr5_4:11630670-11630689 None:intergenic 30.0%
CATGCTCAAATTATCAAAAG+GGG + chr5_4:11630676-11630695 None:intergenic 30.0%
CCATGCTCAAATTATCAAAA+GGG + chr5_4:11630677-11630696 None:intergenic 30.0%
TCCATGCTCAAATTATCAAA+AGG + chr5_4:11630678-11630697 None:intergenic 30.0%
AACATGATTTGAGAAGGAAA+GGG - chr5_4:11630731-11630750 Msa0837590:CDS 30.0%
TACAAAAACAATGCTTCTTC+TGG - chr5_4:11630799-11630818 Msa0837590:intron 30.0%
ACAAAAACAATGCTTCTTCT+GGG - chr5_4:11630800-11630819 Msa0837590:intron 30.0%
CATGGTCAATTGTTGAAAAA+AGG + chr5_4:11630985-11631004 None:intergenic 30.0%
TTGGAGAGATGTTCAAATAT+AGG + chr5_4:11631024-11631043 None:intergenic 30.0%
ACATCTCTCCAATAAAAACA+TGG - chr5_4:11631032-11631051 Msa0837590:five_prime_UTR 30.0%
! CTATTTCTTGGTTCTTAATG+GGG + chr5_4:11631092-11631111 None:intergenic 30.0%
TGGAATTGCATTTGCAAGTT+TGG - chr5_4:11626290-11626309 Msa0837590:three_prime_UTR 35.0%
GGAATTGCATTTGCAAGTTT+GGG - chr5_4:11626291-11626310 Msa0837590:three_prime_UTR 35.0%
! TACTTTGGGAGTGAAAGTTA+CGG - chr5_4:11626329-11626348 Msa0837590:three_prime_UTR 35.0%
GAGGCTGAGATATATTTGTT+TGG - chr5_4:11626402-11626421 Msa0837590:three_prime_UTR 35.0%
GCTGAGATATATTTGTTTGG+TGG - chr5_4:11626405-11626424 Msa0837590:three_prime_UTR 35.0%
ACTTCTTGGAAAGTTCCTAA+TGG - chr5_4:11626435-11626454 Msa0837590:three_prime_UTR 35.0%
AAAAGAAGGTCTTTGCCATT+AGG + chr5_4:11626453-11626472 Msa0837580:CDS 35.0%
TTCTTATTATAAACGGCGTC+GGG + chr5_4:11626483-11626502 Msa0837580:CDS 35.0%
CTTCTTATTATAAACGGCGT+CGG + chr5_4:11626484-11626503 Msa0837580:CDS 35.0%
AATCTCACAAGTGTTTATGC+CGG - chr5_4:11626844-11626863 Msa0837590:three_prime_UTR 35.0%
TCAAATGAACCAATCCAAAC+AGG - chr5_4:11626876-11626895 Msa0837590:three_prime_UTR 35.0%
TGGTTGAGTATTTAACAGCA+TGG - chr5_4:11627255-11627274 Msa0837590:three_prime_UTR 35.0%
TTTAACAGCATGGATTTGCA+AGG - chr5_4:11627265-11627284 Msa0837590:three_prime_UTR 35.0%
GATTTGCAAGGAATTTGGAT+TGG - chr5_4:11627277-11627296 Msa0837590:three_prime_UTR 35.0%
ATACATATAGTCGTGCTATG+TGG - chr5_4:11627361-11627380 Msa0837590:three_prime_UTR 35.0%
TACATATAGTCGTGCTATGT+GGG - chr5_4:11627362-11627381 Msa0837590:three_prime_UTR 35.0%
! ATGTTTGCTGGATATCTGAA+CGG - chr5_4:11627684-11627703 Msa0837590:three_prime_UTR 35.0%
GGATGAAAATCATCTGTACT+TGG + chr5_4:11627735-11627754 None:intergenic 35.0%
TATAAACAGGCTTCTGTAAG+TGG - chr5_4:11627860-11627879 Msa0837590:three_prime_UTR 35.0%
CTACCCTCAATTGGATTATT+AGG + chr5_4:11627938-11627957 None:intergenic 35.0%
TAAGTGGTAACTACTTGTAC+AGG - chr5_4:11628018-11628037 Msa0837590:three_prime_UTR 35.0%
! CAACTTTTTATCCAACCACT+TGG + chr5_4:11628090-11628109 None:intergenic 35.0%
GCACATGAAAATGCATGTAT+GGG + chr5_4:11628159-11628178 None:intergenic 35.0%
TGCACATGAAAATGCATGTA+TGG + chr5_4:11628160-11628179 None:intergenic 35.0%
! ATGATGGAGATAAAGAAGGT+AGG + chr5_4:11628205-11628224 None:intergenic 35.0%
! GAAAGTGTAAGCACTTGATT+TGG + chr5_4:11628618-11628637 None:intergenic 35.0%
GGCGATTGAATTCAAATAAC+TGG - chr5_4:11628826-11628845 Msa0837590:intron 35.0%
TCATGCAGTGTTATGATATC+TGG - chr5_4:11628877-11628896 Msa0837590:intron 35.0%
ACATAGCAAATGTAGAACCA+CGG + chr5_4:11629042-11629061 None:intergenic 35.0%
!! GGTTCTACATTTGCTATGTT+TGG - chr5_4:11629043-11629062 Msa0837590:intron 35.0%
! AAGCTACAATTTCCTGCTTT+TGG - chr5_4:11629123-11629142 Msa0837590:CDS 35.0%
AAATAATTGATAGGCCGGTT+CGG + chr5_4:11629173-11629192 None:intergenic 35.0%
! AAATGTAGCTTTGCATTGTG+TGG + chr5_4:11629401-11629420 None:intergenic 35.0%
AAAATTTATCTGGCGAGAGT+AGG + chr5_4:11629488-11629507 None:intergenic 35.0%
TGCAAGCAGATGATATGTTA+GGG + chr5_4:11629531-11629550 None:intergenic 35.0%
TTGCAAGCAGATGATATGTT+AGG + chr5_4:11629532-11629551 None:intergenic 35.0%
!!! GCAGACCCTTATTTTTTATC+TGG - chr5_4:11629663-11629682 Msa0837590:intron 35.0%
TGCTTGCCAAATGAATATAC+CGG - chr5_4:11629732-11629751 Msa0837590:CDS 35.0%
AAACCAAACTCTGCAATATG+GGG + chr5_4:11629851-11629870 None:intergenic 35.0%
TATGGAACATTATGGATGCA+TGG + chr5_4:11629939-11629958 None:intergenic 35.0%
CATCCATAATGTTCCATAAC+AGG - chr5_4:11629941-11629960 Msa0837590:intron 35.0%
AGTAATCATGCTCTCAAACA+GGG - chr5_4:11629979-11629998 Msa0837590:intron 35.0%
TTTGACAGCATGTAGTCATA+CGG + chr5_4:11630026-11630045 None:intergenic 35.0%
TTCAACCAAATGCAGAAATC+AGG + chr5_4:11630082-11630101 None:intergenic 35.0%
! TATACATGGACTGCGATAAT+TGG + chr5_4:11630148-11630167 None:intergenic 35.0%
CAACTTACTGAACACTAGTA+AGG - chr5_4:11630183-11630202 Msa0837590:intron 35.0%
!! CAGCTTAGGGTTATTTTATC+AGG - chr5_4:11630352-11630371 Msa0837590:intron 35.0%
CAAGAAACAATATCTCGTGA+GGG - chr5_4:11630556-11630575 Msa0837590:intron 35.0%
!! CCCTTTTGATAATTTGAGCA+TGG - chr5_4:11630674-11630693 Msa0837590:CDS 35.0%
GAACATGATTTGAGAAGGAA+AGG - chr5_4:11630730-11630749 Msa0837590:CDS 35.0%
ATCAAAAACCATACGTGCAT+AGG - chr5_4:11630888-11630907 Msa0837590:intron 35.0%
TCAAAAACCATACGTGCATA+GGG - chr5_4:11630889-11630908 Msa0837590:intron 35.0%
ACATATGCATCAATGGAGTT+TGG + chr5_4:11630922-11630941 None:intergenic 35.0%
TATTGTCAACTTGTGTCTGA+TGG - chr5_4:11630957-11630976 Msa0837590:exon 35.0%
AAAAATGGCGATGGCTTCAA+TGG - chr5_4:11626112-11626131 Msa0837590:three_prime_UTR 40.0%
! TTGGTGGTTGCATTACTTCT+TGG - chr5_4:11626421-11626440 Msa0837590:three_prime_UTR 40.0%
AAATTAGGGCCTGTTTGGAT+TGG + chr5_4:11626888-11626907 Msa0837580:CDS 40.0%
AATCCAAACAGGCCCTAATT+TGG - chr5_4:11626887-11626906 Msa0837590:three_prime_UTR 40.0%
ATCCAAACAGGCCCTAATTT+GGG - chr5_4:11626888-11626907 Msa0837590:three_prime_UTR 40.0%
ATCCAAGGGATCCCAAATTA+GGG + chr5_4:11626902-11626921 Msa0837580:CDS 40.0%
TATCCAAGGGATCCCAAATT+AGG + chr5_4:11626903-11626922 Msa0837580:CDS 40.0%
!!! ATTTTCTTCTGGAACAGTGG+AGG - chr5_4:11626930-11626949 Msa0837590:three_prime_UTR 40.0%
CAAACTGTGGAAAGCAATGT+GGG + chr5_4:11626959-11626978 Msa0837580:CDS 40.0%
GCATGGATTTGCAAGGAATT+TGG - chr5_4:11627272-11627291 Msa0837590:three_prime_UTR 40.0%
! AGGAATTTGGATTGGACTGT+TGG - chr5_4:11627285-11627304 Msa0837590:three_prime_UTR 40.0%
! TGGTGATTCTGAGAATGTTG+AGG - chr5_4:11627305-11627324 Msa0837590:three_prime_UTR 40.0%
! GGTGATTCTGAGAATGTTGA+GGG - chr5_4:11627306-11627325 Msa0837590:three_prime_UTR 40.0%
TTCAGTTCCAGAGTTACAAC+AGG + chr5_4:11627336-11627355 Msa0837580:CDS 40.0%
!! TGTTGTAACTCTGGAACTGA+AGG - chr5_4:11627335-11627354 Msa0837590:three_prime_UTR 40.0%
TGTAAGTGGTGCATCAGTTA+AGG - chr5_4:11627874-11627893 Msa0837590:three_prime_UTR 40.0%
GTAAGTGGTGCATCAGTTAA+GGG - chr5_4:11627875-11627894 Msa0837590:three_prime_UTR 40.0%
TAAGTGGTGCATCAGTTAAG+GGG - chr5_4:11627876-11627895 Msa0837590:three_prime_UTR 40.0%
GCATCAGTTAAGGGGTTAAA+AGG - chr5_4:11627884-11627903 Msa0837590:three_prime_UTR 40.0%
TTTATCCAACCACTTGGCTA+AGG + chr5_4:11628084-11628103 None:intergenic 40.0%
ATAGACCATCTTCGTAATGC+AGG - chr5_4:11628441-11628460 Msa0837590:intron 40.0%
TAGACCATCTTCGTAATGCA+GGG - chr5_4:11628442-11628461 Msa0837590:intron 40.0%
GATGAGTTGCAGCTTGATAA+TGG - chr5_4:11628515-11628534 Msa0837590:CDS 40.0%
!! TTGCAGCTTGATAATGGCTT+GGG - chr5_4:11628521-11628540 Msa0837590:CDS 40.0%
GTGGAATCCTCATCTTCAAA+TGG - chr5_4:11628675-11628694 Msa0837590:intron 40.0%
CATGCTTCCATTTGAAGATG+AGG + chr5_4:11628685-11628704 None:intergenic 40.0%
TGACTACAACGTCAACATGA+TGG - chr5_4:11628805-11628824 Msa0837590:intron 40.0%
TCTCGCTTCCAAATGCTATT+TGG - chr5_4:11629086-11629105 Msa0837590:intron 40.0%
TAATAGTTGGCTAGTGGTGA+GGG - chr5_4:11629249-11629268 Msa0837590:intron 40.0%
! GGGATTTGATAATTTGCGAG+AGG - chr5_4:11629269-11629288 Msa0837590:intron 40.0%
! TAGTAGTTTTCCACCCTGTT+TGG + chr5_4:11629456-11629475 None:intergenic 40.0%
TCATACATTTCTCGGACATG+TGG - chr5_4:11629566-11629585 Msa0837590:intron 40.0%
CATACATTTCTCGGACATGT+GGG - chr5_4:11629567-11629586 Msa0837590:intron 40.0%
TGCAGTACTATCACCCTAAA+TGG + chr5_4:11629629-11629648 None:intergenic 40.0%
GAATTGAACCCTGATCATGA+CGG + chr5_4:11629758-11629777 None:intergenic 40.0%
!!! AGAGTTTGGTTTTATGGGCA+TGG - chr5_4:11629859-11629878 Msa0837590:intron 40.0%
AGGGTTGTTGAAAGAAGCAA+AGG + chr5_4:11629897-11629916 None:intergenic 40.0%
CAGTAATCATGCTCTCAAAC+AGG - chr5_4:11629978-11629997 Msa0837590:intron 40.0%
TTGACAGCATGTAGTCATAC+GGG + chr5_4:11630025-11630044 None:intergenic 40.0%
GCAGTATAAGTGAACGAAGT+TGG - chr5_4:11630049-11630068 Msa0837590:intron 40.0%
!! AGGGAAGAGAAGCTTTAGAT+TGG + chr5_4:11630105-11630124 None:intergenic 40.0%
! ATAAGAGCACAACCCAAAAC+TGG - chr5_4:11630241-11630260 Msa0837590:intron 40.0%
CAGAGAAGAATGTCATCTCT+TGG + chr5_4:11630465-11630484 None:intergenic 40.0%
CAAGAGATGACATTCTTCTC+TGG - chr5_4:11630463-11630482 Msa0837590:intron 40.0%
! CCTCACGAGATATTGTTTCT+TGG + chr5_4:11630558-11630577 None:intergenic 40.0%
CCAAGAAACAATATCTCGTG+AGG - chr5_4:11630555-11630574 Msa0837590:intron 40.0%
TGAGGGAAGCAAATCGAATA+GGG - chr5_4:11630573-11630592 Msa0837590:CDS 40.0%
CTTCGTGTCTATGCAATTTC+AGG + chr5_4:11630619-11630638 None:intergenic 40.0%
AAATTGCATAGACACGAAGC+AGG - chr5_4:11630620-11630639 Msa0837590:CDS 40.0%
AATTGCATAGACACGAAGCA+GGG - chr5_4:11630621-11630640 Msa0837590:CDS 40.0%
GTGCAGAACATGATTTGAGA+AGG - chr5_4:11630725-11630744 Msa0837590:CDS 40.0%
GTTTGAATATGCCCTGATCA+TGG - chr5_4:11630831-11630850 Msa0837590:intron 40.0%
TAACTTACCCTATGCACGTA+TGG + chr5_4:11630899-11630918 None:intergenic 40.0%
! GACACAAGTTGACAATAAGC+AGG + chr5_4:11630954-11630973 None:intergenic 40.0%
GGTGAAGTAAAGCAGATTCA+TGG + chr5_4:11631003-11631022 None:intergenic 40.0%
!! GGAGCAGACCATGTTTTTAT+TGG + chr5_4:11631043-11631062 None:intergenic 40.0%
ATGGCTTCAATGGCATTCTG+TGG - chr5_4:11626122-11626141 Msa0837590:three_prime_UTR 45.0%
ACAGTTACCTTTCACAACCG+TGG - chr5_4:11626152-11626171 Msa0837590:three_prime_UTR 45.0%
! TTAACCTGTTGTATCGGCCA+CGG + chr5_4:11626172-11626191 Msa0837580:CDS 45.0%
TTGGGAGTGAAAGTTACGGA+AGG - chr5_4:11626333-11626352 Msa0837590:three_prime_UTR 45.0%
GTGAAAGTTACGGAAGGTGA+AGG - chr5_4:11626339-11626358 Msa0837590:three_prime_UTR 45.0%
GGAGAAGTGAGAACGAGTTT+AGG + chr5_4:11626372-11626391 Msa0837580:CDS 45.0%
ATTATGTCCGGTGTTCGTGT+CGG + chr5_4:11626561-11626580 Msa0837580:CDS 45.0%
ATCCCAAATTAGGGCCTGTT+TGG + chr5_4:11626893-11626912 Msa0837580:CDS 45.0%
CCAAACTGTGGAAAGCAATG+TGG + chr5_4:11626960-11626979 Msa0837580:CDS 45.0%
CCACATTGCTTTCCACAGTT+TGG - chr5_4:11626957-11626976 Msa0837590:three_prime_UTR 45.0%
GGGAAATCCTGTTGTAACTC+TGG - chr5_4:11627326-11627345 Msa0837590:three_prime_UTR 45.0%
! TACCCGAAAGTATGTGTGCA+GGG + chr5_4:11627599-11627618 None:intergenic 45.0%
! TTACCCGAAAGTATGTGTGC+AGG + chr5_4:11627600-11627619 None:intergenic 45.0%
CTTTCTTCGCTACCCTCAAT+TGG + chr5_4:11627947-11627966 None:intergenic 45.0%
CAATTGAGGGTAGCGAAGAA+AGG - chr5_4:11627945-11627964 Msa0837590:three_prime_UTR 45.0%
AACCACTTGGCTAAGGCTAA+GGG + chr5_4:11628077-11628096 None:intergenic 45.0%
ACATCCCTGCATTACGAAGA+TGG + chr5_4:11628449-11628468 None:intergenic 45.0%
ATCTTCGTAATGCAGGGATG+TGG - chr5_4:11628448-11628467 Msa0837590:intron 45.0%
!! GTTGCAGCTTGATAATGGCT+TGG - chr5_4:11628520-11628539 Msa0837590:CDS 45.0%
! ACAGCTGTCCAAGTTTGTTC+AGG + chr5_4:11628990-11629009 None:intergenic 45.0%
CACGGTTACTGATCATGCAA+TGG + chr5_4:11629024-11629043 None:intergenic 45.0%
CATTGCATGATCAGTAACCG+TGG - chr5_4:11629022-11629041 Msa0837590:intron 45.0%
AGCCACTAATAGTTGGCTAG+TGG - chr5_4:11629243-11629262 Msa0837590:intron 45.0%
CACCACTAGCCAACTATTAG+TGG + chr5_4:11629248-11629267 None:intergenic 45.0%
CTAATAGTTGGCTAGTGGTG+AGG - chr5_4:11629248-11629267 Msa0837590:intron 45.0%
AAGGGTCTGCTAAATCTTCC+AGG + chr5_4:11629653-11629672 None:intergenic 45.0%
TGACGGCCGGTATATTCATT+TGG + chr5_4:11629741-11629760 None:intergenic 45.0%
CTTGAGCTTGGCAAAGAGAT+TGG + chr5_4:11629794-11629813 None:intergenic 45.0%
CTGCACAAACATCTTGAGCT+TGG + chr5_4:11629806-11629825 None:intergenic 45.0%
CAAGCTCAAGATGTTTGTGC+AGG - chr5_4:11629804-11629823 Msa0837590:intron 45.0%
GATCCCCATATTGCAGAGTT+TGG - chr5_4:11629845-11629864 Msa0837590:intron 45.0%
TGACAGCATGTAGTCATACG+GGG + chr5_4:11630024-11630043 None:intergenic 45.0%
AAGCTTCTCTTCCCTTTCCA+TGG - chr5_4:11630110-11630129 Msa0837590:CDS 45.0%
TTCTCTTCCCTTTCCATGGA+CGG - chr5_4:11630114-11630133 Msa0837590:intron 45.0%
! ACATGGACTGCGATAATTGG+TGG + chr5_4:11630145-11630164 None:intergenic 45.0%
! AGGTGGATTCACACCTACAT+TGG + chr5_4:11630289-11630308 None:intergenic 45.0%
ATGCTGAAAGCGAACAGCTT+AGG - chr5_4:11630338-11630357 Msa0837590:intron 45.0%
TGCTGAAAGCGAACAGCTTA+GGG - chr5_4:11630339-11630358 Msa0837590:intron 45.0%
GTGTCTTCTACAGCAAATGC+TGG + chr5_4:11630392-11630411 None:intergenic 45.0%
!! ATCGTTGGCTTTGTTAGGAC+AGG + chr5_4:11630433-11630452 None:intergenic 45.0%
!! CCATGATCGTTGGCTTTGTT+AGG + chr5_4:11630438-11630457 None:intergenic 45.0%
CCTAACAAAGCCAACGATCA+TGG - chr5_4:11630435-11630454 Msa0837590:intron 45.0%
TCTTGGACAACCATGATCGT+TGG + chr5_4:11630448-11630467 None:intergenic 45.0%
GTGAGGGAAGCAAATCGAAT+AGG - chr5_4:11630572-11630591 Msa0837590:CDS 45.0%
!!! CAAAAGGGGTTTTGGTTCAG+AGG + chr5_4:11630662-11630681 None:intergenic 45.0%
! GGGAAAGTGTAAGCATTGTG+AGG - chr5_4:11630751-11630770 Msa0837590:CDS 45.0%
CATGTGGAACACCATGATCA+GGG + chr5_4:11630845-11630864 None:intergenic 45.0%
TCATGTGGAACACCATGATC+AGG + chr5_4:11630846-11630865 None:intergenic 45.0%
GTGTTCCACATGACAGTGTT+CGG - chr5_4:11630853-11630872 Msa0837590:intron 45.0%
TGCAGCTACTCCAACTCAAT+GGG + chr5_4:11631065-11631084 None:intergenic 45.0%
TTGCAGCTACTCCAACTCAA+TGG + chr5_4:11631066-11631085 None:intergenic 45.0%
CGTCGGGACGAACAAAAAGA+AGG + chr5_4:11626467-11626486 Msa0837580:CDS 50.0%
TGCTTTCCACAGTTTGGTCC+TGG - chr5_4:11626963-11626982 Msa0837590:three_prime_UTR 50.0%
ATTGCACCAGGACCAAACTG+TGG + chr5_4:11626972-11626991 Msa0837580:CDS 50.0%
CATACCTGCTGAATTGCACC+AGG + chr5_4:11626984-11627003 Msa0837580:CDS 50.0%
ACTTGGCTAAGGCTAAGGGA+AGG + chr5_4:11628073-11628092 None:intergenic 50.0%
!! TTCCCTTAGCCTTAGCCAAG+TGG - chr5_4:11628072-11628091 Msa0837590:CDS 50.0%
CAACCACTTGGCTAAGGCTA+AGG + chr5_4:11628078-11628097 None:intergenic 50.0%
!! CTTAGCCTTAGCCAAGTGGT+TGG - chr5_4:11628076-11628095 Msa0837590:CDS 50.0%
TTGCCTCTTACCCATGTAGC+TGG - chr5_4:11628638-11628657 Msa0837590:intron 50.0%
TGACCAGCTACATGGGTAAG+AGG + chr5_4:11628644-11628663 None:intergenic 50.0%
GAACAGTGCACAGTCTAGCA+GGG + chr5_4:11628784-11628803 None:intergenic 50.0%
AGAACAGTGCACAGTCTAGC+AGG + chr5_4:11628785-11628804 None:intergenic 50.0%
! AAGTTTGTTCAGGCTCGAGC+TGG + chr5_4:11628980-11628999 None:intergenic 50.0%
AGCTCGAGCCTGAACAAACT+TGG - chr5_4:11628979-11628998 Msa0837590:intron 50.0%
!! TCCTGCTTTTGGTTGTCGTG+CGG - chr5_4:11629134-11629153 Msa0837590:CDS 50.0%
ACATTTCTCGGACATGTGGG+TGG - chr5_4:11629570-11629589 Msa0837590:intron 50.0%
CATTTCTCGGACATGTGGGT+GGG - chr5_4:11629571-11629590 Msa0837590:intron 50.0%
ATTTCTCGGACATGTGGGTG+GGG - chr5_4:11629572-11629591 Msa0837590:intron 50.0%
TTGCCCACGAGTTCTTTGCT+GGG + chr5_4:11629604-11629623 None:intergenic 50.0%
ACTCGTGGGCAACACCATTT+AGG - chr5_4:11629612-11629631 Msa0837590:intron 50.0%
CTCGTGGGCAACACCATTTA+GGG - chr5_4:11629613-11629632 Msa0837590:intron 50.0%
AGGGTGATAGTACTGCATCC+TGG - chr5_4:11629632-11629651 Msa0837590:intron 50.0%
TCATGCTGCAGCTGGAGAAT+GGG + chr5_4:11629711-11629730 None:intergenic 50.0%
TTCATGCTGCAGCTGGAGAA+TGG + chr5_4:11629712-11629731 None:intergenic 50.0%
ATATACCGGCCGTCATGATC+AGG - chr5_4:11629746-11629765 Msa0837590:CDS 50.0%
TATACCGGCCGTCATGATCA+GGG - chr5_4:11629747-11629766 Msa0837590:CDS 50.0%
GCTCAAGATGTTTGTGCAGG+TGG - chr5_4:11629807-11629826 Msa0837590:intron 50.0%
AAGATGTTTGTGCAGGTGGC+AGG - chr5_4:11629811-11629830 Msa0837590:intron 50.0%
GGATGCATGGTAGACCTTCT+GGG + chr5_4:11629926-11629945 None:intergenic 50.0%
TGGATGCATGGTAGACCTTC+TGG + chr5_4:11629927-11629946 None:intergenic 50.0%
!! CATACGGGGCTAGTTGAAGA+AGG + chr5_4:11630010-11630029 None:intergenic 50.0%
! ATGTGCAGGTCTTGGTGCAT+TGG + chr5_4:11630320-11630339 None:intergenic 50.0%
CTTTCAGCATGTGCAGGTCT+TGG + chr5_4:11630328-11630347 None:intergenic 50.0%
TGTTCGCTTTCAGCATGTGC+AGG + chr5_4:11630334-11630353 None:intergenic 50.0%
! CTACAGCAAATGCTGGTTGC+CGG + chr5_4:11630385-11630404 None:intergenic 50.0%
GTTCACCGAACACTGTCATG+TGG + chr5_4:11630861-11630880 None:intergenic 50.0%
GCAGCTACTCCAACTCAATG+GGG + chr5_4:11631064-11631083 None:intergenic 50.0%
GACTCGTACCCGCGGAAATT+CGG + chr5_4:11625970-11625989 Msa0837580:intron 55.0%
! ATCCTCTTGACTCGTACCCG+CGG + chr5_4:11625978-11625997 Msa0837580:intron 55.0%
! GTATCGGCCACGGTTGTGAA+AGG + chr5_4:11626162-11626181 Msa0837580:CDS 55.0%
ACAACCGTGGCCGATACAAC+AGG - chr5_4:11626165-11626184 Msa0837590:three_prime_UTR 55.0%
CTCGTTCTCACTTCTCCAGC+TGG - chr5_4:11626375-11626394 Msa0837590:three_prime_UTR 55.0%
! CACTTCTCCAGCTGGTAGTG+AGG - chr5_4:11626383-11626402 Msa0837590:three_prime_UTR 55.0%
ATCTCAGCCTCACTACCAGC+TGG + chr5_4:11626393-11626412 Msa0837580:CDS 55.0%
! GGCCCTAATTTGGGATCCCT+TGG - chr5_4:11626897-11626916 Msa0837590:three_prime_UTR 55.0%
TGGTCCTGGTGCAATTCAGC+AGG - chr5_4:11626977-11626996 Msa0837590:three_prime_UTR 55.0%
! CCGAAAGTATGTGTGCAGGG+CGG + chr5_4:11627596-11627615 None:intergenic 55.0%
CCGCCCTGCACACATACTTT+CGG - chr5_4:11627593-11627612 Msa0837590:three_prime_UTR 55.0%
CGCCCTGCACACATACTTTC+GGG - chr5_4:11627594-11627613 Msa0837590:three_prime_UTR 55.0%
! AGGGATGTGGTCACTTTCCC+AGG - chr5_4:11628461-11628480 Msa0837590:intron 55.0%
CCGCATCTGACCAGCTACAT+GGG + chr5_4:11628651-11628670 None:intergenic 55.0%
CCCATGTAGCTGGTCAGATG+CGG - chr5_4:11628648-11628667 Msa0837590:intron 55.0%
ACCGCATCTGACCAGCTACA+TGG + chr5_4:11628652-11628671 None:intergenic 55.0%
ACCGCACGACAACCAAAAGC+AGG + chr5_4:11629138-11629157 None:intergenic 55.0%
!! TGCTTTTGGTTGTCGTGCGG+TGG - chr5_4:11629137-11629156 Msa0837590:CDS 55.0%
GTGGAAACGTGGTTCCGAAC+CGG - chr5_4:11629156-11629175 Msa0837590:CDS 55.0%
AGCCCCAGCAAAGAACTCGT+GGG - chr5_4:11629598-11629617 Msa0837590:intron 55.0%
TGCCCACGAGTTCTTTGCTG+GGG + chr5_4:11629603-11629622 None:intergenic 55.0%
GTTGCCCACGAGTTCTTTGC+TGG + chr5_4:11629605-11629624 None:intergenic 55.0%
GCAAGCATTCATGCTGCAGC+TGG + chr5_4:11629719-11629738 None:intergenic 55.0%
TGAACCCTGATCATGACGGC+CGG + chr5_4:11629754-11629773 None:intergenic 55.0%
TAGACCTTCTGGGTCGTGCA+GGG + chr5_4:11629916-11629935 None:intergenic 55.0%
GGCTTTGCCGTCCATGGAAA+GGG + chr5_4:11630124-11630143 None:intergenic 55.0%
! TGGCTTTGCCGTCCATGGAA+AGG + chr5_4:11630125-11630144 None:intergenic 55.0%
! ATTGGTGGCTTTGCCGTCCA+TGG + chr5_4:11630130-11630149 None:intergenic 55.0%
TTGGTGCATTGGAGCAAGGC+AGG + chr5_4:11630309-11630328 None:intergenic 55.0%
! GGTCTTGGTGCATTGGAGCA+AGG + chr5_4:11630313-11630332 None:intergenic 55.0%
GACACGAAGCAGGGAGTTTG+TGG - chr5_4:11630630-11630649 Msa0837590:CDS 55.0%
TGGTCTGCTCCCCATTGAGT+TGG - chr5_4:11631052-11631071 Msa0837590:five_prime_UTR 55.0%
TTCCGCGGGTACGAGTCAAG+AGG - chr5_4:11625973-11625992 Msa0837590:three_prime_UTR 60.0%
GACACCACCGACACGAACAC+CGG - chr5_4:11626551-11626570 Msa0837590:three_prime_UTR 60.0%
ATGTCCGGTGTTCGTGTCGG+TGG + chr5_4:11626558-11626577 Msa0837580:CDS 60.0%
! GCTGGTCAGATGCGGTGTTG+TGG - chr5_4:11628656-11628675 Msa0837590:intron 60.0%
GTTGTCGTGCGGTGGAAACG+TGG - chr5_4:11629145-11629164 Msa0837590:CDS 60.0%
CAGCCCCAGCAAAGAACTCG+TGG - chr5_4:11629597-11629616 Msa0837590:intron 60.0%
ACAACCCTGCACGACCCAGA+AGG - chr5_4:11629909-11629928 Msa0837590:intron 60.0%
GTAGACCTTCTGGGTCGTGC+AGG + chr5_4:11629917-11629936 None:intergenic 60.0%
GTGCATTGGAGCAAGGCAGG+TGG + chr5_4:11630306-11630325 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 11625960 11631119 11625960 ID=Msa0837590;Name=Msa0837590
chr5_4 mRNA 11625960 11631119 11625960 ID=Msa0837590-mRNA-1;Parent=Msa0837590;Name=Msa0837590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=156|1|1|1|1|1|9|2088|312
chr5_4 exon 11625960 11628113 11625960 ID=Msa0837590-mRNA-1:exon:5094;Parent=Msa0837590-mRNA-1
chr5_4 exon 11628341 11628422 11628341 ID=Msa0837590-mRNA-1:exon:5093;Parent=Msa0837590-mRNA-1
chr5_4 exon 11628509 11628616 11628509 ID=Msa0837590-mRNA-1:exon:5092;Parent=Msa0837590-mRNA-1
chr5_4 exon 11629113 11629210 11629113 ID=Msa0837590-mRNA-1:exon:5091;Parent=Msa0837590-mRNA-1
chr5_4 exon 11629464 11629562 11629464 ID=Msa0837590-mRNA-1:exon:5090;Parent=Msa0837590-mRNA-1
chr5_4 exon 11629669 11629806 11629669 ID=Msa0837590-mRNA-1:exon:5089;Parent=Msa0837590-mRNA-1
chr5_4 exon 11630081 11630132 11630081 ID=Msa0837590-mRNA-1:exon:5088;Parent=Msa0837590-mRNA-1
chr5_4 exon 11630565 11630789 11630565 ID=Msa0837590-mRNA-1:exon:5087;Parent=Msa0837590-mRNA-1
chr5_4 exon 11630893 11631119 11630893 ID=Msa0837590-mRNA-1:exon:5086;Parent=Msa0837590-mRNA-1
chr5_4 five_prime_UTR 11630964 11631119 11630964 ID=Msa0837590-mRNA-1:five_prime_utr;Parent=Msa0837590-mRNA-1
chr5_4 CDS 11630893 11630963 11630893 ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4 CDS 11630565 11630789 11630565 ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4 CDS 11630081 11630132 11630081 ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4 CDS 11629669 11629806 11629669 ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4 CDS 11629464 11629562 11629464 ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4 CDS 11629113 11629210 11629113 ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4 CDS 11628509 11628616 11628509 ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4 CDS 11628341 11628422 11628341 ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4 CDS 11628048 11628113 11628048 ID=Msa0837590-mRNA-1:cds;Parent=Msa0837590-mRNA-1
chr5_4 three_prime_UTR 11625960 11628047 11625960 ID=Msa0837590-mRNA-1:three_prime_utr;Parent=Msa0837590-mRNA-1
Gene Sequence

>Msa0837590

ATGGCGATGGCTTCAATGGCATTCTGTGGTGTCAACACAGTTACCTTTCACAACCGTGGCCGATACAACAGTGGAATTGCATTTGCAAGTTTGGGAAACAAAGAAAAAACTACTTTGGGAGTGAAAGTTACGGAAGGTGAAGGAAATTTGCCTAAACTCGTTCTCACTTCTCCAGCTGGTAGTGAGGCTGAGATATATTTGTTTGGTGGTTGCATTACTTCTTGGAAAGTTCCTAATGGCAAAGACCTTCTTTTTGTTCGTCCCGACGCCGTTTATAATAAGAAGAAACCAATAAGTGGAGGTATCCCACATTGCTTTCCACAGTTTGGTCCTGGTGCAATTCAGCAGCATGGATTTGCAAGGAATTTGGATTGGACTGTTGGTGATTCTGAGAATGTTGAGGGAAATCCTGTTGTAACTCTGGAACTGAAGGATGATACATATAGTCGTGCTATGTGGGATTTCAGCTTTCATGCTTTATATAAGGTCACACTAAATGCTAAAAGTCTTTCGACTGAGTTAAAAGTTAAAAATACTGACAATAAGGCATTCTCATTCAATACCGCCCTGCACACATACTTTCGGGCTTCTGTAAGTGGTGCATCAGTTAAGGGGTTAAAAGGTTGCAAAACTCTGAACAAACATCCAGATCCTAATAATCCAATTGAGGGTAGCGAAGAAAGGGATGTGGTCACTTTCCCAGGATTTGTAGATTGTGTTTATCTTAACGCTTCAGATGAGTTGCAGCTTGATAATGGCTTGGGTGATATAATTTCTATCAAGAACACGAACTGGTCAGATGCGGTGTTGTGGAATCCTCATCTTCAAATGGAAGCATGTTACAAAGATTTTGTTTGTGTTGAAAATGCTAAGATTGGAAATGTCCAGCTCGAGCCTGAACAAACTTGGACAGCTGTGCAGCATCTTACCATTGCATGA
Protein sequence

>Msa0837590

MAMASMAFCGVNTVTFHNRGRYNSGIAFASLGNKEKTTLGVKVTEGEGNLPKLVLTSPAGSEAEIYLFGGCITSWKVPNGKDLLFVRPDAVYNKKKPISGGIPHCFPQFGPGAIQQHGFARNLDWTVGDSENVEGNPVVTLELKDDTYSRAMWDFSFHALYKVTLNAKSLSTELKVKNTDNKAFSFNTALHTYFRASVSGASVKGLKGCKTLNKHPDPNNPIEGSEERDVVTFPGFVDCVYLNASDELQLDNGLGDIISIKNTNWSDAVLWNPHLQMEACYKDFVCVENAKIGNVQLEPEQTWTAVQHLTIA*