Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652760 | XP_013456900.1 | 96.154 | 286 | 10 | 1 | 1 | 285 | 1 | 286 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652760 | sp|Q8GYB1|NUD15_ARATH | 70.504 | 278 | 77 | 4 | 3 | 277 | 10 | 285 | 1.28e-129 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652760 | A0A072UNI2 | 96.154 | 286 | 10 | 1 | 1 | 285 | 1 | 286 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004060 | Msa0652760 | 0.835724 | 1.420768e-56 | -8.615850e-47 |
| Msa0005000 | Msa0652760 | -0.809210 | 2.118172e-50 | -8.615850e-47 |
| Msa0006880 | Msa0652760 | 0.812472 | 4.166744e-51 | -8.615850e-47 |
| Msa0010770 | Msa0652760 | 0.814140 | 1.792535e-51 | -8.615850e-47 |
| Msa0027390 | Msa0652760 | 0.806143 | 9.492637e-50 | -8.615850e-47 |
| Msa0033880 | Msa0652760 | 0.807837 | 4.157961e-50 | -8.615850e-47 |
| Msa0039250 | Msa0652760 | 0.811903 | 5.546662e-51 | -8.615850e-47 |
| Msa0047250 | Msa0652760 | 0.808817 | 2.570909e-50 | -8.615850e-47 |
| Msa0090030 | Msa0652760 | 0.847185 | 1.357183e-59 | -8.615850e-47 |
| Msa0096580 | Msa0652760 | 0.804101 | 2.538788e-49 | -8.615850e-47 |
| Msa0097950 | Msa0652760 | 0.818218 | 2.198627e-52 | -8.615850e-47 |
| Msa0098390 | Msa0652760 | -0.811872 | 5.633364e-51 | -8.615850e-47 |
| Msa0100800 | Msa0652760 | 0.803640 | 3.165118e-49 | -8.615850e-47 |
| Msa0108870 | Msa0652760 | 0.830089 | 3.573993e-55 | -8.615850e-47 |
| Msa0118000 | Msa0652760 | 0.800120 | 1.672865e-48 | -8.615850e-47 |
| Msa0619920 | Msa0652760 | 0.811695 | 6.155730e-51 | -8.615850e-47 |
| Msa0620330 | Msa0652760 | 0.805766 | 1.139480e-49 | -8.615850e-47 |
| Msa0626680 | Msa0652760 | 0.825739 | 3.977049e-54 | -8.615850e-47 |
| Msa0626940 | Msa0652760 | 0.816350 | 5.786444e-52 | -8.615850e-47 |
| Msa0646130 | Msa0652760 | 0.832125 | 1.130070e-55 | -8.615850e-47 |
| Msa0651150 | Msa0652760 | 0.816478 | 5.417527e-52 | -8.615850e-47 |
| Msa0652300 | Msa0652760 | 0.809139 | 2.193184e-50 | -8.615850e-47 |
| Msa0652410 | Msa0652760 | 0.844512 | 7.220771e-59 | -8.615850e-47 |
| Msa0652760 | Msa0659990 | 0.826503 | 2.618415e-54 | -8.615850e-47 |
| Msa0652760 | Msa0664760 | 0.815599 | 8.511094e-52 | -8.615850e-47 |
| Msa0652760 | Msa0687230 | 0.805238 | 1.469777e-49 | -8.615850e-47 |
| Msa0652760 | Msa0687450 | 0.807914 | 4.005683e-50 | -8.615850e-47 |
| Msa0652760 | Msa0695010 | 0.961617 | 6.553847e-120 | -8.615850e-47 |
| Msa0652760 | Msa0695110 | 0.950849 | 7.025290e-109 | -8.615850e-47 |
| Msa0652760 | Msa0706390 | 0.824104 | 9.671247e-54 | -8.615850e-47 |
| Msa0652760 | Msa0747720 | -0.802934 | 4.431633e-49 | -8.615850e-47 |
| Msa0652760 | Msa0756930 | 0.845621 | 3.622715e-59 | -8.615850e-47 |
| Msa0652760 | Msa0795660 | 0.812902 | 3.355021e-51 | -8.615850e-47 |
| Msa0652760 | Msa0825280 | 0.803479 | 3.418435e-49 | -8.615850e-47 |
| Msa0652760 | Msa0836500 | 0.822615 | 2.155198e-53 | -8.615850e-47 |
| Msa0652760 | Msa0851470 | 0.801379 | 9.255922e-49 | -8.615850e-47 |
| Msa0652760 | Msa0858820 | 0.810209 | 1.291550e-50 | -8.615850e-47 |
| Msa0652760 | Msa0861830 | 0.814736 | 1.323519e-51 | -8.615850e-47 |
| Msa0652760 | Msa0888940 | 0.820542 | 6.491800e-53 | -8.615850e-47 |
| Msa0652760 | Msa0947530 | -0.819431 | 1.165498e-52 | -8.615850e-47 |
| Msa0652760 | Msa0980940 | 0.822079 | 2.869245e-53 | -8.615850e-47 |
| Msa0652760 | Msa0981430 | 0.828170 | 1.043249e-54 | -8.615850e-47 |
| Msa0652760 | Msa1033970 | 0.805171 | 1.518459e-49 | -8.615850e-47 |
| Msa0652760 | Msa1038210 | -0.809845 | 1.547098e-50 | -8.615850e-47 |
| Msa0652760 | Msa1073830 | 0.801647 | 8.157631e-49 | -8.615850e-47 |
| Msa0652760 | Msa1083880 | 0.808471 | 3.047562e-50 | -8.615850e-47 |
| Msa0652760 | Msa1093330 | 0.806217 | 9.156911e-50 | -8.615850e-47 |
| Msa0652760 | Msa1113590 | 0.808603 | 2.855577e-50 | -8.615850e-47 |
| Msa0652760 | Msa1169720 | 0.806452 | 8.170306e-50 | -8.615850e-47 |
| Msa0652760 | Msa1198880 | 0.834452 | 2.973340e-56 | -8.615850e-47 |
| Msa0652760 | Msa1201830 | 0.817174 | 3.780040e-52 | -8.615850e-47 |
| Msa0652760 | Msa1202150 | 0.803378 | 3.587839e-49 | -8.615850e-47 |
| Msa0652760 | Msa1205850 | 0.801953 | 7.060924e-49 | -8.615850e-47 |
| Msa0652760 | Msa1207730 | 0.818716 | 1.695666e-52 | -8.615850e-47 |
| Msa0652760 | Msa1223330 | 0.808182 | 3.511044e-50 | -8.615850e-47 |
| Msa0652760 | Msa1253810 | 0.808267 | 3.367552e-50 | -8.615850e-47 |
| Msa0652760 | Msa1280620 | 0.843365 | 1.465332e-58 | -8.615850e-47 |
| Msa0652760 | Msa1286550 | 0.806182 | 9.314657e-50 | -8.615850e-47 |
| Msa0652760 | Msa1294840 | 0.827411 | 1.588162e-54 | -8.615850e-47 |
| Msa0652760 | Msa1294960 | 0.853387 | 2.470723e-61 | -8.615850e-47 |
| Msa0652760 | Msa1296300 | 0.816098 | 6.586398e-52 | -8.615850e-47 |
| Msa0652760 | Msa1333970 | 0.802280 | 6.046614e-49 | -8.615850e-47 |
| Msa0652760 | Msa1340830 | 0.813507 | 2.471962e-51 | -8.615850e-47 |
| Msa0652760 | Msa1363700 | 0.838584 | 2.635953e-57 | -8.615850e-47 |
| Msa0652760 | Msa1369490 | 0.844437 | 7.566768e-59 | -8.615850e-47 |
| Msa0652760 | Msa1422840 | 0.813088 | 3.055374e-51 | -8.615850e-47 |
| Msa0652760 | Msa1422910 | 0.804897 | 1.732950e-49 | -8.615850e-47 |
| Msa0652760 | Msa1430290 | 0.948706 | 5.536713e-107 | -8.615850e-47 |
| Msa0652760 | Msa1464290 | 0.816745 | 4.720312e-52 | -8.615850e-47 |
| Msa0126770 | Msa0652760 | 0.830236 | 3.291078e-55 | -8.615850e-47 |
| Msa0127040 | Msa0652760 | 0.814004 | 1.921409e-51 | -8.615850e-47 |
| Msa0127850 | Msa0652760 | 0.814062 | 1.865690e-51 | -8.615850e-47 |
| Msa0133720 | Msa0652760 | 0.804642 | 1.958443e-49 | -8.615850e-47 |
| Msa0138210 | Msa0652760 | 0.808161 | 3.548113e-50 | -8.615850e-47 |
| Msa0140400 | Msa0652760 | 0.825756 | 3.939724e-54 | -8.615850e-47 |
| Msa0145150 | Msa0652760 | 0.804788 | 1.826196e-49 | -8.615850e-47 |
| Msa0165300 | Msa0652760 | 0.815073 | 1.114338e-51 | -8.615850e-47 |
| Msa0171850 | Msa0652760 | 0.805138 | 1.542456e-49 | -8.615850e-47 |
| Msa0171980 | Msa0652760 | 0.810676 | 1.023862e-50 | -8.615850e-47 |
| Msa0174000 | Msa0652760 | 0.815781 | 7.754439e-52 | -8.615850e-47 |
| Msa0177270 | Msa0652760 | 0.808399 | 3.156868e-50 | -8.615850e-47 |
| Msa0183420 | Msa0652760 | 0.800570 | 1.354468e-48 | -8.615850e-47 |
| Msa0193600 | Msa0652760 | 0.803080 | 4.135156e-49 | -8.615850e-47 |
| Msa0198520 | Msa0652760 | 0.800255 | 1.570226e-48 | -8.615850e-47 |
| Msa0208810 | Msa0652760 | 0.819846 | 9.370693e-53 | -8.615850e-47 |
| Msa0381000 | Msa0652760 | 0.805485 | 1.304731e-49 | -8.615850e-47 |
| Msa0392200 | Msa0652760 | 0.842082 | 3.212817e-58 | -8.615850e-47 |
| Msa0423270 | Msa0652760 | 0.807361 | 5.247559e-50 | -8.615850e-47 |
| Msa0436200 | Msa0652760 | 0.808049 | 3.748579e-50 | -8.615850e-47 |
| Msa0439890 | Msa0652760 | 0.823358 | 1.445821e-53 | -8.615850e-47 |
| Msa0461590 | Msa0652760 | 0.800931 | 1.143375e-48 | -8.615850e-47 |
| Msa0474700 | Msa0652760 | 0.828749 | 7.562742e-55 | -8.615850e-47 |
| Msa0239940 | Msa0652760 | 0.818869 | 1.564962e-52 | -8.615850e-47 |
| Msa0244380 | Msa0652760 | 0.800743 | 1.249037e-48 | -8.615850e-47 |
| Msa0273650 | Msa0652760 | 0.803575 | 3.265731e-49 | -8.615850e-47 |
| Msa0291520 | Msa0652760 | 0.806610 | 7.566392e-50 | -8.615850e-47 |
| Msa0299520 | Msa0652760 | 0.804221 | 2.396602e-49 | -8.615850e-47 |
| Msa0308220 | Msa0652760 | 0.816336 | 5.829777e-52 | -8.615850e-47 |
| Msa0321170 | Msa0652760 | 0.808402 | 3.152571e-50 | -8.615850e-47 |
| Msa0322590 | Msa0652760 | 0.811885 | 5.597901e-51 | -8.615850e-47 |
| Msa0343190 | Msa0652760 | 0.827844 | 1.249551e-54 | -8.615850e-47 |
| Msa0346990 | Msa0652760 | 0.849887 | 2.423206e-60 | -8.615850e-47 |
| Msa0363810 | Msa0652760 | 0.810545 | 1.092823e-50 | -8.615850e-47 |
| Msa0487780 | Msa0652760 | 0.808006 | 3.828194e-50 | -8.615850e-47 |
| Msa0510290 | Msa0652760 | 0.803399 | 3.551416e-49 | -8.615850e-47 |
| Msa0524590 | Msa0652760 | 0.805092 | 1.577481e-49 | -8.615850e-47 |
| Msa0527910 | Msa0652760 | 0.824055 | 9.928063e-54 | -8.615850e-47 |
| Msa0549590 | Msa0652760 | 0.801852 | 7.405579e-49 | -8.615850e-47 |
| Msa0550570 | Msa0652760 | 0.810436 | 1.153514e-50 | -8.615850e-47 |
| Msa0578090 | Msa0652760 | 0.824825 | 6.543922e-54 | -8.615850e-47 |
| Msa0586850 | Msa0652760 | 0.831891 | 1.290796e-55 | -8.615850e-47 |
| Msa0588120 | Msa0652760 | 0.803687 | 3.094525e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652760 | MtrunA17_Chr4g0046091 | 96.154 | 286 | 10 | 1 | 1 | 285 | 1 | 286 | 0.0 | 558 |
| Msa0652760 | MtrunA17_Chr2g0283341 | 49.145 | 234 | 90 | 4 | 29 | 262 | 1 | 205 | 5.81e-74 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652760 | AT1G28960.3 | 69.825 | 285 | 81 | 4 | 3 | 284 | 10 | 292 | 1.22e-132 | 377 |
| Msa0652760 | AT1G28960.1 | 69.825 | 285 | 81 | 4 | 3 | 284 | 10 | 292 | 1.22e-132 | 377 |
| Msa0652760 | AT1G28960.5 | 69.825 | 285 | 81 | 4 | 3 | 284 | 10 | 292 | 1.22e-132 | 377 |
| Msa0652760 | AT1G28960.7 | 70.504 | 278 | 77 | 4 | 3 | 277 | 10 | 285 | 1.30e-130 | 372 |
| Msa0652760 | AT1G28960.6 | 70.504 | 278 | 77 | 4 | 3 | 277 | 10 | 285 | 1.30e-130 | 372 |
| Msa0652760 | AT2G33980.2 | 68.016 | 247 | 72 | 3 | 33 | 277 | 18 | 259 | 3.12e-114 | 330 |
| Msa0652760 | AT2G33980.4 | 68.016 | 247 | 72 | 3 | 33 | 277 | 18 | 259 | 3.12e-114 | 330 |
| Msa0652760 | AT2G33980.1 | 68.016 | 247 | 72 | 3 | 33 | 277 | 18 | 259 | 1.33e-113 | 330 |
| Msa0652760 | AT2G33980.3 | 68.016 | 247 | 72 | 3 | 33 | 277 | 18 | 259 | 3.52e-113 | 329 |
| Msa0652760 | AT5G45940.1 | 61.053 | 190 | 70 | 2 | 87 | 272 | 28 | 217 | 2.81e-79 | 239 |
| Msa0652760 | AT5G45940.2 | 62.791 | 129 | 45 | 1 | 87 | 212 | 28 | 156 | 1.70e-51 | 166 |
| Msa0652760 | AT5G45940.3 | 63.780 | 127 | 43 | 1 | 87 | 210 | 28 | 154 | 5.19e-51 | 166 |
Find 98 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCCTCTTCCTTTCTTTC+AGG | 0.144264 | 4_3:+60451356 | None:intergenic |
| AACCTGTGGAACTTTGAATT+TGG | 0.148694 | 4_3:+60451498 | None:intergenic |
| TGAATCATGGTAGCTGATTC+AGG | 0.246118 | 4_3:+60453817 | None:intergenic |
| GTAACAACATTGACTAGTTT+TGG | 0.246703 | 4_3:+60453245 | None:intergenic |
| CGAGAGGCAGAAGAGGAAAT+TGG | 0.270083 | 4_3:-60453275 | Msa0652760:CDS |
| TCTTGAACCATTCTTGTCTA+AGG | 0.274255 | 4_3:-60453219 | Msa0652760:intron |
| CTCTGTTCCAAAACATCTTC+AGG | 0.287071 | 4_3:+60453883 | None:intergenic |
| ATTTCTGCTCACCTTGTGTT+TGG | 0.302067 | 4_3:-60451312 | Msa0652760:three_prime_UTR |
| TGGCAAAGTTGTTTCTCAAT+TGG | 0.304222 | 4_3:-60453845 | Msa0652760:CDS |
| ACCTGTGGAACTTTGAATTT+GGG | 0.326845 | 4_3:+60451499 | None:intergenic |
| GCAAACTGCCATCACATCTA+TGG | 0.329294 | 4_3:+60451119 | None:intergenic |
| AAAGTGATGATGGGGATCTA+AGG | 0.334445 | 4_3:-60453741 | Msa0652760:CDS |
| GGCAAAGTTGTTTCTCAATT+GGG | 0.351294 | 4_3:-60453844 | Msa0652760:CDS |
| CAATAACAATTTGATACTAT+AGG | 0.355004 | 4_3:-60454116 | Msa0652760:five_prime_UTR |
| TTGGTGACAGATACTGTTCT+TGG | 0.364656 | 4_3:+60454003 | None:intergenic |
| ACTAGCAGTTTAATGTTTGA+AGG | 0.371560 | 4_3:+60454176 | None:intergenic |
| TAGAATAAATCAAATGGAAA+AGG | 0.394241 | 4_3:-60451274 | Msa0652760:three_prime_UTR |
| CGATGACAGGAACTACTCTT+AGG | 0.397188 | 4_3:+60451878 | None:intergenic |
| AATAACAATTTGATACTATA+GGG | 0.401857 | 4_3:-60454115 | Msa0652760:five_prime_UTR |
| TCCAGATCCCAAAATTAGTC+TGG | 0.402451 | 4_3:+60451237 | None:intergenic |
| TGCAGCCCTAATCAAAATTC+CGG | 0.409951 | 4_3:+60451564 | None:intergenic |
| TCAGGAAGAGAGAGAGTGGA+TGG | 0.414184 | 4_3:-60451662 | Msa0652760:CDS |
| TGCTAGTTTAACTACTTGTC+CGG | 0.424659 | 4_3:-60454160 | Msa0652760:five_prime_UTR |
| CCTTCCTCCGCTTTCCCACC+AGG | 0.426104 | 4_3:+60453326 | None:intergenic |
| TACAATAATATATATTCGTC+AGG | 0.427184 | 4_3:-60451395 | Msa0652760:three_prime_UTR |
| AGAATAAATCAAATGGAAAA+GGG | 0.430085 | 4_3:-60451273 | Msa0652760:three_prime_UTR |
| TGTTTATTTGAAAGTGATGA+TGG | 0.443684 | 4_3:-60453751 | Msa0652760:CDS |
| TTGCAAAAGCTAATCTAAAC+CGG | 0.444277 | 4_3:+60454141 | None:intergenic |
| GAAAGCGGAGGAAGGGGATA+AGG | 0.452799 | 4_3:-60453318 | Msa0652760:CDS |
| GATCGGTAGAATAAATCAAA+TGG | 0.459510 | 4_3:-60451280 | Msa0652760:three_prime_UTR |
| ACCTGAGTGAGTAGAGAGCT+TGG | 0.464566 | 4_3:+60453696 | None:intergenic |
| AATACTGATTCCACTTCTGC+AGG | 0.466410 | 4_3:+60451814 | None:intergenic |
| ACTTCTGCAGGATTCAGAAC+AGG | 0.470641 | 4_3:+60451826 | None:intergenic |
| TGGTGGGAAAGCGGAGGAAG+GGG | 0.473889 | 4_3:-60453324 | Msa0652760:CDS |
| GCTTTAAGCAGGATGAAAAT+CGG | 0.478548 | 4_3:-60451687 | Msa0652760:intron |
| TTTGAAGGTCTGATCCTTGT+CGG | 0.479051 | 4_3:+60454191 | None:intergenic |
| CCTGGTGGGAAAGCGGAGGA+AGG | 0.480967 | 4_3:-60453326 | Msa0652760:CDS |
| TCCAAAACATCTTCAGGAAA+AGG | 0.484289 | 4_3:+60453889 | None:intergenic |
| GGAATAATAAAATGTTGTAA+AGG | 0.484974 | 4_3:-60451217 | Msa0652760:three_prime_UTR |
| ATTTATATCTCCTGAAAGAA+AGG | 0.485574 | 4_3:-60451366 | Msa0652760:three_prime_UTR |
| GGAAGAAGAATCCATGACTT+TGG | 0.487067 | 4_3:+60453984 | None:intergenic |
| GAAATATGAATTCCAAGTGA+TGG | 0.489702 | 4_3:+60451330 | None:intergenic |
| GAGAGGCAGAAGAGGAAATT+GGG | 0.494487 | 4_3:-60453274 | Msa0652760:CDS |
| TGTTCTGAATCCTGCAGAAG+TGG | 0.496762 | 4_3:-60451824 | Msa0652760:CDS |
| CTGGTGGGAAAGCGGAGGAA+GGG | 0.497359 | 4_3:-60453325 | Msa0652760:CDS |
| GCAGGATGAAAATCGGAGTC+AGG | 0.500021 | 4_3:-60451680 | Msa0652760:intron |
| ACCTTGAGAAACATTTCTAA+AGG | 0.503154 | 4_3:+60451784 | None:intergenic |
| TCTTCCAACGTTACCACTGG+TGG | 0.507992 | 4_3:-60453967 | Msa0652760:CDS |
| TCCCAAATTCAAAGTTCCAC+AGG | 0.509189 | 4_3:-60451500 | Msa0652760:CDS |
| CTGCATCAATTGTGTACAAA+CGG | 0.513281 | 4_3:-60451546 | Msa0652760:CDS |
| CTCATATGGGGATTGACTGC+CGG | 0.519065 | 4_3:-60451583 | Msa0652760:CDS |
| ATCTCCTGAAAGAAAGGAAG+AGG | 0.524063 | 4_3:-60451360 | Msa0652760:three_prime_UTR |
| GGCAGAAGAGGAAATTGGGT+TGG | 0.528513 | 4_3:-60453270 | Msa0652760:CDS |
| TCATGAAGTATGCCGATGAC+AGG | 0.534330 | 4_3:+60451865 | None:intergenic |
| TCTTCTTCCAACGTTACCAC+TGG | 0.535311 | 4_3:-60453970 | Msa0652760:CDS |
| AGAGGATGCTGTCCATCACT+TGG | 0.536088 | 4_3:-60451342 | Msa0652760:three_prime_UTR |
| CAGGAAGAGAGAGAGTGGAT+GGG | 0.539082 | 4_3:-60451661 | Msa0652760:CDS |
| AAGTGATGATGGGGATCTAA+GGG | 0.540717 | 4_3:-60453740 | Msa0652760:CDS |
| TGAAGAAAAGAAATATATTG+AGG | 0.545140 | 4_3:+60451421 | None:intergenic |
| GTGTTTGGATATCTAATGAT+CGG | 0.547839 | 4_3:-60451297 | Msa0652760:three_prime_UTR |
| ACCTTTAGAAATGTTTCTCA+AGG | 0.548045 | 4_3:-60451785 | Msa0652760:intron |
| GGATTCTGCTCTATGAAAGC+CGG | 0.548477 | 4_3:+60451520 | None:intergenic |
| TGCAAAACGAGAGGCAGAAG+AGG | 0.549211 | 4_3:-60453282 | Msa0652760:CDS |
| ATCTCAGAGACTTCTTGCGT+TGG | 0.549765 | 4_3:-60453944 | Msa0652760:CDS |
| ATTTGATACTATAGGGTAGG+TGG | 0.554437 | 4_3:-60454108 | Msa0652760:five_prime_UTR |
| GTTTATTTGAAAGTGATGAT+GGG | 0.557864 | 4_3:-60453750 | Msa0652760:CDS |
| AGTTCCACAGGTTGTAAGCA+AGG | 0.560370 | 4_3:-60451488 | Msa0652760:CDS |
| CTATCCTTGCTTACAACCTG+TGG | 0.562710 | 4_3:+60451484 | None:intergenic |
| ATAGATACCTTAGACAAGAA+TGG | 0.563801 | 4_3:+60453212 | None:intergenic |
| AATTGTGTACAAACGGCCAC+CGG | 0.564192 | 4_3:-60451539 | Msa0652760:CDS |
| TCTTCAGGAAAAGGTGGTGG+TGG | 0.564320 | 4_3:+60453898 | None:intergenic |
| GTCATTGCCTGGTGGGAAAG+CGG | 0.565959 | 4_3:-60453333 | Msa0652760:CDS |
| GAATAAATCAAATGGAAAAG+GGG | 0.577318 | 4_3:-60451272 | Msa0652760:three_prime_UTR |
| TGAAATGATAAGCAATAAGA+TGG | 0.579545 | 4_3:-60451179 | Msa0652760:three_prime_UTR |
| AGTATCTGTCACCAAAGTCA+TGG | 0.580073 | 4_3:-60453995 | Msa0652760:CDS |
| CTAAGAGTAGTTCCTGTCAT+CGG | 0.582497 | 4_3:-60451877 | Msa0652760:CDS |
| GGAGTCAGGAAGAGAGAGAG+TGG | 0.584588 | 4_3:-60451666 | Msa0652760:CDS |
| GTAGGTGAAGTGTCATTGCC+TGG | 0.586937 | 4_3:-60453344 | Msa0652760:intron |
| AGGATAGTTCAATGACTTGA+CGG | 0.587268 | 4_3:-60451468 | Msa0652760:exon |
| CGCGGCCACTGCAAAACGAG+AGG | 0.591310 | 4_3:-60453291 | Msa0652760:CDS |
| ACATCTTCAGGAAAAGGTGG+TGG | 0.591697 | 4_3:+60453895 | None:intergenic |
| TCCAAGCTCTCTACTCACTC+AGG | 0.594205 | 4_3:-60453697 | Msa0652760:intron |
| ACAATTTGATACTATAGGGT+AGG | 0.599534 | 4_3:-60454111 | Msa0652760:five_prime_UTR |
| TTTGATACTATAGGGTAGGT+GGG | 0.601183 | 4_3:-60454107 | Msa0652760:five_prime_UTR |
| TGACAGGAACTACTCTTAGG+AGG | 0.607814 | 4_3:+60451881 | None:intergenic |
| TTTATTTGAAAGTGATGATG+GGG | 0.614807 | 4_3:-60453749 | Msa0652760:CDS |
| AAAACATCTTCAGGAAAAGG+TGG | 0.635918 | 4_3:+60453892 | None:intergenic |
| GAACAGAGCATTGAAGAGAG+TGG | 0.639203 | 4_3:-60453868 | Msa0652760:CDS |
| TTCTGCTCTATGAAAGCCGG+TGG | 0.643205 | 4_3:+60451523 | None:intergenic |
| AGATCCACCAGTGGTAACGT+TGG | 0.652080 | 4_3:+60453963 | None:intergenic |
| GTGAAGTGTCATTGCCTGGT+GGG | 0.658192 | 4_3:-60453340 | Msa0652760:CDS |
| ATTGCCTGGTGGGAAAGCGG+AGG | 0.658525 | 4_3:-60453330 | Msa0652760:CDS |
| ACAAAGATTTCATTCCGACA+AGG | 0.669608 | 4_3:-60454205 | Msa0652760:five_prime_UTR |
| CAGAGCATTGAAGAGAGTGG+TGG | 0.680698 | 4_3:-60453865 | Msa0652760:CDS |
| GGTGAAGTGTCATTGCCTGG+TGG | 0.686704 | 4_3:-60453341 | Msa0652760:CDS |
| TCATTAGATATCCAAACACA+AGG | 0.698944 | 4_3:+60451301 | None:intergenic |
| GGAAGGGGATAAGGACGACG+CGG | 0.736631 | 4_3:-60453309 | Msa0652760:CDS |
| AAGTCTCTGAGATCCACCAG+TGG | 0.760789 | 4_3:+60453954 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAATCATTTTAAGAAAA+GGG | + | chr4_3:60452666-60452685 | None:intergenic | 10.0% |
| !!! | TTATAAATCATTTTAAGAAA+AGG | + | chr4_3:60452667-60452686 | None:intergenic | 10.0% |
| !! | AATAACAATTTGATACTATA+GGG | - | chr4_3:60451203-60451222 | Msa0652760:three_prime_UTR | 15.0% |
| !!! | TTTTCTTTAATAGGAAAAAA+AGG | + | chr4_3:60452819-60452838 | None:intergenic | 15.0% |
| !!! | AATCAATTTGAGAAATTTTT+CGG | - | chr4_3:60453135-60453154 | Msa0652760:intron | 15.0% |
| !!! | TCTTTGTCTTAGATTTTATA+TGG | + | chr4_3:60451100-60451119 | None:intergenic | 20.0% |
| !! | CAATAACAATTTGATACTAT+AGG | - | chr4_3:60451202-60451221 | Msa0652760:three_prime_UTR | 20.0% |
| !!! | TTTTTAGGACTAAAATTATC+TGG | + | chr4_3:60451531-60451550 | None:intergenic | 20.0% |
| !!! | TTTTTTTAGACAAATGTTAG+TGG | - | chr4_3:60451724-60451743 | Msa0652760:intron | 20.0% |
| !!! | TACTTTAGTTATTGTGATTT+TGG | - | chr4_3:60451895-60451914 | Msa0652760:intron | 20.0% |
| !!! | TTTTGGTTATTTGAATTTAG+AGG | - | chr4_3:60451912-60451931 | Msa0652760:intron | 20.0% |
| !! | TTTGGTTATTTGAATTTAGA+GGG | - | chr4_3:60451913-60451932 | Msa0652760:intron | 20.0% |
| !!! | TTTCAGCAATTTTCTTTAAT+AGG | + | chr4_3:60452828-60452847 | None:intergenic | 20.0% |
| !!! | TTTTTCGGAAATTTATTTGT+TGG | - | chr4_3:60453150-60453169 | Msa0652760:intron | 20.0% |
| !!! | GAAATTTATTTGTTGGATAA+TGG | - | chr4_3:60453157-60453176 | Msa0652760:intron | 20.0% |
| !! | GGGTTATAAATTTGTATTAT+TGG | - | chr4_3:60453272-60453291 | Msa0652760:CDS | 20.0% |
| !! | TGAAGAAAAGAAATATATTG+AGG | + | chr4_3:60453900-60453919 | None:intergenic | 20.0% |
| !! | TACAATAATATATATTCGTC+AGG | - | chr4_3:60453923-60453942 | Msa0652760:CDS | 20.0% |
| !! | TAGAATAAATCAAATGGAAA+AGG | - | chr4_3:60454044-60454063 | Msa0652760:CDS | 20.0% |
| !! | AGAATAAATCAAATGGAAAA+GGG | - | chr4_3:60454045-60454064 | Msa0652760:CDS | 20.0% |
| !!! | AAAAAATTCCAGACTAATTT+TGG | - | chr4_3:60454073-60454092 | Msa0652760:five_prime_UTR | 20.0% |
| !!! | AAAAATTCCAGACTAATTTT+GGG | - | chr4_3:60454074-60454093 | Msa0652760:five_prime_UTR | 20.0% |
| !! | GGAATAATAAAATGTTGTAA+AGG | - | chr4_3:60454101-60454120 | Msa0652760:five_prime_UTR | 20.0% |
| !! | ATTATCTGGATTTTGAATCA+TGG | + | chr4_3:60451517-60451536 | None:intergenic | 25.0% |
| ! | TGTTTATTTGAAAGTGATGA+TGG | - | chr4_3:60451567-60451586 | Msa0652760:CDS | 25.0% |
| ! | GTTTATTTGAAAGTGATGAT+GGG | - | chr4_3:60451568-60451587 | Msa0652760:CDS | 25.0% |
| !! | TTTATTTGAAAGTGATGATG+GGG | - | chr4_3:60451569-60451588 | Msa0652760:CDS | 25.0% |
| ! | TAAAGATTCAAAATTCCAAG+TGG | + | chr4_3:60452183-60452202 | None:intergenic | 25.0% |
| !!! | CTAGAAAATGTTGATTTTGT+TGG | - | chr4_3:60452251-60452270 | Msa0652760:intron | 25.0% |
| !! | TGTAATTATTTAGCTCATGA+AGG | - | chr4_3:60452294-60452313 | Msa0652760:intron | 25.0% |
| ! | ACTTCATTCTTGAATATCAT+CGG | - | chr4_3:60452436-60452455 | Msa0652760:intron | 25.0% |
| ! | AATTCCTGAAAACAATAAAC+AGG | + | chr4_3:60452702-60452721 | None:intergenic | 25.0% |
| ! | TAACAACACTTCATAGATTT+AGG | - | chr4_3:60453050-60453069 | Msa0652760:intron | 25.0% |
| ! | GATACAAATAAAACTAAGCA+TGG | + | chr4_3:60453561-60453580 | None:intergenic | 25.0% |
| ! | AGCAGAAAAAATATCTCATA+TGG | - | chr4_3:60453721-60453740 | Msa0652760:CDS | 25.0% |
| ! | GCAGAAAAAATATCTCATAT+GGG | - | chr4_3:60453722-60453741 | Msa0652760:CDS | 25.0% |
| ! | CAGAAAAAATATCTCATATG+GGG | - | chr4_3:60453723-60453742 | Msa0652760:CDS | 25.0% |
| ! | ATTTATATCTCCTGAAAGAA+AGG | - | chr4_3:60453952-60453971 | Msa0652760:CDS | 25.0% |
| ! | GAATAAATCAAATGGAAAAG+GGG | - | chr4_3:60454046-60454065 | Msa0652760:exon | 25.0% |
| ! | TGAAATGATAAGCAATAAGA+TGG | - | chr4_3:60454139-60454158 | Msa0652760:five_prime_UTR | 25.0% |
| !! | TTTTTAATCCATAGATGTGA+TGG | - | chr4_3:60454191-60454210 | Msa0652760:five_prime_UTR | 25.0% |
| ACTAGCAGTTTAATGTTTGA+AGG | + | chr4_3:60451145-60451164 | None:intergenic | 30.0% | |
| TTGCAAAAGCTAATCTAAAC+CGG | + | chr4_3:60451180-60451199 | None:intergenic | 30.0% | |
| ACAATTTGATACTATAGGGT+AGG | - | chr4_3:60451207-60451226 | Msa0652760:three_prime_UTR | 30.0% | |
| !!! | ATCAAAACAGCAGCTTTTTT+AGG | + | chr4_3:60451546-60451565 | None:intergenic | 30.0% |
| AATTTAGAGGGAATGAATTG+AGG | - | chr4_3:60451925-60451944 | Msa0652760:intron | 30.0% | |
| ATTTAGAGGGAATGAATTGA+GGG | - | chr4_3:60451926-60451945 | Msa0652760:intron | 30.0% | |
| !!! | GTAACAACATTGACTAGTTT+TGG | + | chr4_3:60452076-60452095 | None:intergenic | 30.0% |
| ATAGATACCTTAGACAAGAA+TGG | + | chr4_3:60452109-60452128 | None:intergenic | 30.0% | |
| TTAATTGAGTATTCTCCACT+TGG | - | chr4_3:60452165-60452184 | Msa0652760:intron | 30.0% | |
| AAATTTATGTCTGCGATTGA+TGG | - | chr4_3:60452205-60452224 | Msa0652760:intron | 30.0% | |
| CCAAGACAACAATCATAATA+AGG | + | chr4_3:60452549-60452568 | None:intergenic | 30.0% | |
| CCTTATTATGATTGTTGTCT+TGG | - | chr4_3:60452546-60452565 | Msa0652760:intron | 30.0% | |
| ! | TCTACCTGTTTATTGTTTTC+AGG | - | chr4_3:60452695-60452714 | Msa0652760:intron | 30.0% |
| ! | CTAATCAGTTTGTTTACATC+AGG | + | chr4_3:60452729-60452748 | None:intergenic | 30.0% |
| CTGATGTAAACAAACTGATT+AGG | - | chr4_3:60452727-60452746 | Msa0652760:intron | 30.0% | |
| CTAAGAAATGTTGCATTCAA+TGG | - | chr4_3:60452783-60452802 | Msa0652760:intron | 30.0% | |
| AAAGCATAAGTTCGTTATTG+TGG | + | chr4_3:60452927-60452946 | None:intergenic | 30.0% | |
| ! | TTATGCTTTGAACTAGATAG+AGG | - | chr4_3:60452938-60452957 | Msa0652760:intron | 30.0% |
| !!! | TGCATAAAGTTTTGAAACTG+TGG | + | chr4_3:60453183-60453202 | None:intergenic | 30.0% |
| GAGGAATAGACTAATAGAAA+AGG | + | chr4_3:60453338-60453357 | None:intergenic | 30.0% | |
| GCTGTAAAAGAAACAATGAT+AGG | + | chr4_3:60453416-60453435 | None:intergenic | 30.0% | |
| ! | ACCTTTAGAAATGTTTCTCA+AGG | - | chr4_3:60453533-60453552 | Msa0652760:intron | 30.0% |
| ACCTTGAGAAACATTTCTAA+AGG | + | chr4_3:60453537-60453556 | None:intergenic | 30.0% | |
| GAAATATGAATTCCAAGTGA+TGG | + | chr4_3:60453991-60454010 | None:intergenic | 30.0% | |
| TCATTAGATATCCAAACACA+AGG | + | chr4_3:60454020-60454039 | None:intergenic | 30.0% | |
| GTGTTTGGATATCTAATGAT+CGG | - | chr4_3:60454021-60454040 | Msa0652760:CDS | 30.0% | |
| GATCGGTAGAATAAATCAAA+TGG | - | chr4_3:60454038-60454057 | Msa0652760:CDS | 30.0% | |
| AAGATGGTGAAAAATGAACT+TGG | - | chr4_3:60454155-60454174 | Msa0652760:five_prime_UTR | 30.0% | |
| ACAAAGATTTCATTCCGACA+AGG | - | chr4_3:60451113-60451132 | Msa0652760:three_prime_UTR | 35.0% | |
| ! | TGCTAGTTTAACTACTTGTC+CGG | - | chr4_3:60451158-60451177 | Msa0652760:three_prime_UTR | 35.0% |
| ATTTGATACTATAGGGTAGG+TGG | - | chr4_3:60451210-60451229 | Msa0652760:three_prime_UTR | 35.0% | |
| TTTGATACTATAGGGTAGGT+GGG | - | chr4_3:60451211-60451230 | Msa0652760:three_prime_UTR | 35.0% | |
| AAAACATCTTCAGGAAAAGG+TGG | + | chr4_3:60451429-60451448 | None:intergenic | 35.0% | |
| ! | ACCTTTTCCTGAAGATGTTT+TGG | - | chr4_3:60451428-60451447 | Msa0652760:three_prime_UTR | 35.0% |
| TCCAAAACATCTTCAGGAAA+AGG | + | chr4_3:60451432-60451451 | None:intergenic | 35.0% | |
| !! | TGGCAAAGTTGTTTCTCAAT+TGG | - | chr4_3:60451473-60451492 | Msa0652760:CDS | 35.0% |
| !! | GGCAAAGTTGTTTCTCAATT+GGG | - | chr4_3:60451474-60451493 | Msa0652760:CDS | 35.0% |
| GCACATACACTTCTCATATT+AGG | + | chr4_3:60451796-60451815 | None:intergenic | 35.0% | |
| AACCATTTGCCCAATAGTAT+AGG | + | chr4_3:60451857-60451876 | None:intergenic | 35.0% | |
| ATACTATTGGGCAAATGGTT+TGG | - | chr4_3:60451857-60451876 | Msa0652760:CDS | 35.0% | |
| TACTATTGGGCAAATGGTTT+GGG | - | chr4_3:60451858-60451877 | Msa0652760:CDS | 35.0% | |
| ! | GGTGTGTGTGTTTTATATGT+AGG | - | chr4_3:60451956-60451975 | Msa0652760:intron | 35.0% |
| TCTTGAACCATTCTTGTCTA+AGG | - | chr4_3:60452099-60452118 | Msa0652760:intron | 35.0% | |
| GTCTGTATAAAGTAATGCAG+TGG | - | chr4_3:60452594-60452613 | Msa0652760:intron | 35.0% | |
| GGGTATGTATCTGATTCTTT+AGG | + | chr4_3:60452646-60452665 | None:intergenic | 35.0% | |
| ! | TACATGACTTTTACAGTTGG+TGG | + | chr4_3:60452865-60452884 | None:intergenic | 35.0% |
| ! | GGATACATGACTTTTACAGT+TGG | + | chr4_3:60452868-60452887 | None:intergenic | 35.0% |
| AAAAGTCATGTATCCATTGC+AGG | - | chr4_3:60452873-60452892 | Msa0652760:intron | 35.0% | |
| ACGTTCTTATTAGCAACGAT+TGG | - | chr4_3:60453105-60453124 | Msa0652760:intron | 35.0% | |
| AAGTATGACCATTTCAGAGT+CGG | - | chr4_3:60453238-60453257 | Msa0652760:CDS | 35.0% | |
| ATGTTTACATTCCCTGTTGT+TGG | - | chr4_3:60453300-60453319 | Msa0652760:CDS | 35.0% | |
| GTGTAAACTATCCAACAACA+GGG | + | chr4_3:60453314-60453333 | None:intergenic | 35.0% | |
| TGTGTAAACTATCCAACAAC+AGG | + | chr4_3:60453315-60453334 | None:intergenic | 35.0% | |
| ! | GCTTTAAGCAGGATGAAAAT+CGG | - | chr4_3:60453631-60453650 | Msa0652760:intron | 35.0% |
| CTGCATCAATTGTGTACAAA+CGG | - | chr4_3:60453772-60453791 | Msa0652760:CDS | 35.0% | |
| ACCTGTGGAACTTTGAATTT+GGG | + | chr4_3:60453822-60453841 | None:intergenic | 35.0% | |
| AACCTGTGGAACTTTGAATT+TGG | + | chr4_3:60453823-60453842 | None:intergenic | 35.0% | |
| AGGATAGTTCAATGACTTGA+CGG | - | chr4_3:60453850-60453869 | Msa0652760:CDS | 35.0% | |
| TTTGAAGGTCTGATCCTTGT+CGG | + | chr4_3:60451130-60451149 | None:intergenic | 40.0% | |
| ! | TTGGTGACAGATACTGTTCT+TGG | + | chr4_3:60451318-60451337 | None:intergenic | 40.0% |
| AGTATCTGTCACCAAAGTCA+TGG | - | chr4_3:60451323-60451342 | Msa0652760:three_prime_UTR | 40.0% | |
| GGAAGAAGAATCCATGACTT+TGG | + | chr4_3:60451337-60451356 | None:intergenic | 40.0% | |
| CTCTGTTCCAAAACATCTTC+AGG | + | chr4_3:60451438-60451457 | None:intergenic | 40.0% | |
| ! | TGAATCATGGTAGCTGATTC+AGG | + | chr4_3:60451504-60451523 | None:intergenic | 40.0% |
| !! | AAAGTGATGATGGGGATCTA+AGG | - | chr4_3:60451577-60451596 | Msa0652760:CDS | 40.0% |
| !! | AAGTGATGATGGGGATCTAA+GGG | - | chr4_3:60451578-60451597 | Msa0652760:CDS | 40.0% |
| TTTGCCCAATAGTATAGGCT+GGG | + | chr4_3:60451852-60451871 | None:intergenic | 40.0% | |
| ATTTGCCCAATAGTATAGGC+TGG | + | chr4_3:60451853-60451872 | None:intergenic | 40.0% | |
| AGCCTATACTATTGGGCAAA+TGG | - | chr4_3:60451852-60451871 | Msa0652760:CDS | 40.0% | |
| ACTATTGGGCAAATGGTTTG+GGG | - | chr4_3:60451859-60451878 | Msa0652760:CDS | 40.0% | |
| ! | TGCGATTGATGGTTAGTTCA+TGG | - | chr4_3:60452216-60452235 | Msa0652760:intron | 40.0% |
| TACTTATTCCTCACACAGCA+TGG | + | chr4_3:60452325-60452344 | None:intergenic | 40.0% | |
| TAAAGTAATGCAGTGGCCAT+TGG | - | chr4_3:60452601-60452620 | Msa0652760:intron | 40.0% | |
| TCCATTGCAGGTCATTAAAC+TGG | - | chr4_3:60452885-60452904 | Msa0652760:intron | 40.0% | |
| CCATTGCAGGTCATTAAACT+GGG | - | chr4_3:60452886-60452905 | Msa0652760:intron | 40.0% | |
| ACTTAGTGCTCAGCATAAAC+AGG | - | chr4_3:60453010-60453029 | Msa0652760:intron | 40.0% | |
| AAATTTATAACCCGTGACCG+CGG | + | chr4_3:60453265-60453284 | None:intergenic | 40.0% | |
| AGTCTATTCCTCATCTGCTT+CGG | - | chr4_3:60453346-60453365 | Msa0652760:intron | 40.0% | |
| !! | CGGATTGAAAGTGTTCAATG+AGG | - | chr4_3:60453366-60453385 | Msa0652760:intron | 40.0% |
| TGATAGGTGAGATGAAGTAC+TGG | + | chr4_3:60453400-60453419 | None:intergenic | 40.0% | |
| CTAAGAGTAGTTCCTGTCAT+CGG | - | chr4_3:60453441-60453460 | Msa0652760:intron | 40.0% | |
| !! | AATACTGATTCCACTTCTGC+AGG | + | chr4_3:60453507-60453526 | None:intergenic | 40.0% |
| !!! | TGACTGCCGGAATTTTGATT+AGG | - | chr4_3:60453748-60453767 | Msa0652760:CDS | 40.0% |
| !!! | GACTGCCGGAATTTTGATTA+GGG | - | chr4_3:60453749-60453768 | Msa0652760:CDS | 40.0% |
| TGCAGCCCTAATCAAAATTC+CGG | + | chr4_3:60453757-60453776 | None:intergenic | 40.0% | |
| TCCCAAATTCAAAGTTCCAC+AGG | - | chr4_3:60453818-60453837 | Msa0652760:CDS | 40.0% | |
| ATCTCCTGAAAGAAAGGAAG+AGG | - | chr4_3:60453958-60453977 | Msa0652760:CDS | 40.0% | |
| ATTTCTGCTCACCTTGTGTT+TGG | - | chr4_3:60454006-60454025 | Msa0652760:CDS | 40.0% | |
| !!! | TCCAGACTAATTTTGGGATC+TGG | - | chr4_3:60454080-60454099 | Msa0652760:five_prime_UTR | 40.0% |
| TCCAGATCCCAAAATTAGTC+TGG | + | chr4_3:60454084-60454103 | None:intergenic | 40.0% | |
| TCTTCTTCCAACGTTACCAC+TGG | - | chr4_3:60451348-60451367 | Msa0652760:three_prime_UTR | 45.0% | |
| ATCTCAGAGACTTCTTGCGT+TGG | - | chr4_3:60451374-60451393 | Msa0652760:three_prime_UTR | 45.0% | |
| ACATCTTCAGGAAAAGGTGG+TGG | + | chr4_3:60451426-60451445 | None:intergenic | 45.0% | |
| !! | GAACAGAGCATTGAAGAGAG+TGG | - | chr4_3:60451450-60451469 | Msa0652760:three_prime_UTR | 45.0% |
| AGATAACGTGTGTCTGACAC+AGG | - | chr4_3:60451764-60451783 | Msa0652760:intron | 45.0% | |
| GATAACGTGTGTCTGACACA+GGG | - | chr4_3:60451765-60451784 | Msa0652760:intron | 45.0% | |
| TGTGTCCCAGCCTATACTAT+TGG | - | chr4_3:60451844-60451863 | Msa0652760:CDS | 45.0% | |
| GTGTCCCAGCCTATACTATT+GGG | - | chr4_3:60451845-60451864 | Msa0652760:CDS | 45.0% | |
| AGGGAATGAATTGAGGGTTG+TGG | - | chr4_3:60451932-60451951 | Msa0652760:intron | 45.0% | |
| GAATGAATTGAGGGTTGTGG+TGG | - | chr4_3:60451935-60451954 | Msa0652760:intron | 45.0% | |
| GAGAGGCAGAAGAGGAAATT+GGG | - | chr4_3:60452044-60452063 | Msa0652760:intron | 45.0% | |
| ! | TGCTCTGAGTCTGAGATGAT+TGG | - | chr4_3:60452352-60452371 | Msa0652760:intron | 45.0% |
| ! | GAGTCTGAGATGATTGGAGA+TGG | - | chr4_3:60452358-60452377 | Msa0652760:intron | 45.0% |
| ! | TCTGAGATGATTGGAGATGG+AGG | - | chr4_3:60452361-60452380 | Msa0652760:intron | 45.0% |
| CTGAGATGATTGGAGATGGA+GGG | - | chr4_3:60452362-60452381 | Msa0652760:intron | 45.0% | |
| TCAGCTGCACTTCATGTATC+TGG | + | chr4_3:60452502-60452521 | None:intergenic | 45.0% | |
| AGATACATGAAGTGCAGCTG+AGG | - | chr4_3:60452501-60452520 | Msa0652760:intron | 45.0% | |
| ATCCCATTCCCATTCACCAA+TGG | + | chr4_3:60452620-60452639 | None:intergenic | 45.0% | |
| TTCTTCACTGTCCACGTTCA+TGG | - | chr4_3:60452751-60452770 | Msa0652760:intron | 45.0% | |
| AGTACGTACAACCATGAACG+TGG | + | chr4_3:60452765-60452784 | None:intergenic | 45.0% | |
| CCCAGTTTAATGACCTGCAA+TGG | + | chr4_3:60452889-60452908 | None:intergenic | 45.0% | |
| CTTTCAATCCGAAGCAGATG+AGG | + | chr4_3:60453357-60453376 | None:intergenic | 45.0% | |
| TGACAGGAACTACTCTTAGG+AGG | + | chr4_3:60453440-60453459 | None:intergenic | 45.0% | |
| CGATGACAGGAACTACTCTT+AGG | + | chr4_3:60453443-60453462 | None:intergenic | 45.0% | |
| TCATGAAGTATGCCGATGAC+AGG | + | chr4_3:60453456-60453475 | None:intergenic | 45.0% | |
| ACTTCTGCAGGATTCAGAAC+AGG | + | chr4_3:60453495-60453514 | None:intergenic | 45.0% | |
| ! | TGTTCTGAATCCTGCAGAAG+TGG | - | chr4_3:60453494-60453513 | Msa0652760:intron | 45.0% |
| ! | CTGAAGCGATTGCTTTAAGC+AGG | - | chr4_3:60453620-60453639 | Msa0652760:intron | 45.0% |
| AATTGTGTACAAACGGCCAC+CGG | - | chr4_3:60453779-60453798 | Msa0652760:CDS | 45.0% | |
| GGATTCTGCTCTATGAAAGC+CGG | + | chr4_3:60453801-60453820 | None:intergenic | 45.0% | |
| AGTTCCACAGGTTGTAAGCA+AGG | - | chr4_3:60453830-60453849 | Msa0652760:CDS | 45.0% | |
| CTATCCTTGCTTACAACCTG+TGG | + | chr4_3:60453837-60453856 | None:intergenic | 45.0% | |
| GCATCCTCTTCCTTTCTTTC+AGG | + | chr4_3:60453965-60453984 | None:intergenic | 45.0% | |
| GCAAACTGCCATCACATCTA+TGG | + | chr4_3:60454202-60454221 | None:intergenic | 45.0% | |
| TCTTCCAACGTTACCACTGG+TGG | - | chr4_3:60451351-60451370 | Msa0652760:three_prime_UTR | 50.0% | |
| ! | AGATCCACCAGTGGTAACGT+TGG | + | chr4_3:60451358-60451377 | None:intergenic | 50.0% |
| !! | AAGTCTCTGAGATCCACCAG+TGG | + | chr4_3:60451367-60451386 | None:intergenic | 50.0% |
| ! | TCTTCAGGAAAAGGTGGTGG+TGG | + | chr4_3:60451423-60451442 | None:intergenic | 50.0% |
| !! | CAGAGCATTGAAGAGAGTGG+TGG | - | chr4_3:60451453-60451472 | Msa0652760:exon | 50.0% |
| TCCAAGCTCTCTACTCACTC+AGG | - | chr4_3:60451621-60451640 | Msa0652760:CDS | 50.0% | |
| ACCTGAGTGAGTAGAGAGCT+TGG | + | chr4_3:60451625-60451644 | None:intergenic | 50.0% | |
| ! | GTAGGTGAAGTGTCATTGCC+TGG | - | chr4_3:60451974-60451993 | Msa0652760:intron | 50.0% |
| ! | GTGAAGTGTCATTGCCTGGT+GGG | - | chr4_3:60451978-60451997 | Msa0652760:intron | 50.0% |
| ! | TTCTGCCTCTCGTTTTGCAG+TGG | + | chr4_3:60452035-60452054 | None:intergenic | 50.0% |
| TGCAAAACGAGAGGCAGAAG+AGG | - | chr4_3:60452036-60452055 | Msa0652760:intron | 50.0% | |
| CGAGAGGCAGAAGAGGAAAT+TGG | - | chr4_3:60452043-60452062 | Msa0652760:intron | 50.0% | |
| GGCAGAAGAGGAAATTGGGT+TGG | - | chr4_3:60452048-60452067 | Msa0652760:intron | 50.0% | |
| AGGAGATTCCATGCTGTGTG+AGG | - | chr4_3:60452314-60452333 | Msa0652760:intron | 50.0% | |
| ATGCAGTGGCCATTGGTGAA+TGG | - | chr4_3:60452608-60452627 | Msa0652760:intron | 50.0% | |
| TGCAGTGGCCATTGGTGAAT+GGG | - | chr4_3:60452609-60452628 | Msa0652760:intron | 50.0% | |
| TGGCCATTGGTGAATGGGAA+TGG | - | chr4_3:60452614-60452633 | Msa0652760:intron | 50.0% | |
| GGCCATTGGTGAATGGGAAT+GGG | - | chr4_3:60452615-60452634 | Msa0652760:intron | 50.0% | |
| GCAGGATGAAAATCGGAGTC+AGG | - | chr4_3:60453638-60453657 | Msa0652760:intron | 50.0% | |
| TCAGGAAGAGAGAGAGTGGA+TGG | - | chr4_3:60453656-60453675 | Msa0652760:intron | 50.0% | |
| CAGGAAGAGAGAGAGTGGAT+GGG | - | chr4_3:60453657-60453676 | Msa0652760:intron | 50.0% | |
| CTCATATGGGGATTGACTGC+CGG | - | chr4_3:60453735-60453754 | Msa0652760:CDS | 50.0% | |
| TTCTGCTCTATGAAAGCCGG+TGG | + | chr4_3:60453798-60453817 | None:intergenic | 50.0% | |
| AGAGGATGCTGTCCATCACT+TGG | - | chr4_3:60453976-60453995 | Msa0652760:CDS | 50.0% | |
| ! | GGTGAAGTGTCATTGCCTGG+TGG | - | chr4_3:60451977-60451996 | Msa0652760:intron | 55.0% |
| GTCATTGCCTGGTGGGAAAG+CGG | - | chr4_3:60451985-60452004 | Msa0652760:intron | 55.0% | |
| GAAAGCGGAGGAAGGGGATA+AGG | - | chr4_3:60452000-60452019 | Msa0652760:intron | 55.0% | |
| !! | GAAGTGCAGCTGAGGTACTG+AGG | - | chr4_3:60452509-60452528 | Msa0652760:intron | 55.0% |
| !! | ACAGTTGGTGGCACGAGCAA+TGG | + | chr4_3:60452853-60452872 | None:intergenic | 55.0% |
| ACCATTTCAGAGTCGGTCCG+CGG | - | chr4_3:60453245-60453264 | Msa0652760:CDS | 55.0% | |
| GGAGTCAGGAAGAGAGAGAG+TGG | - | chr4_3:60453652-60453671 | Msa0652760:intron | 55.0% | |
| ATTGCCTGGTGGGAAAGCGG+AGG | - | chr4_3:60451988-60452007 | Msa0652760:intron | 60.0% | |
| CTGGTGGGAAAGCGGAGGAA+GGG | - | chr4_3:60451993-60452012 | Msa0652760:intron | 60.0% | |
| TGGTGGGAAAGCGGAGGAAG+GGG | - | chr4_3:60451994-60452013 | Msa0652760:intron | 60.0% | |
| GGAAGGGGATAAGGACGACG+CGG | - | chr4_3:60452009-60452028 | Msa0652760:intron | 60.0% | |
| ! | ACCGCGGACCGACTCTGAAA+TGG | + | chr4_3:60453249-60453268 | None:intergenic | 60.0% |
| CCTTCCTCCGCTTTCCCACC+AGG | + | chr4_3:60451995-60452014 | None:intergenic | 65.0% | |
| CCTGGTGGGAAAGCGGAGGA+AGG | - | chr4_3:60451992-60452011 | Msa0652760:intron | 65.0% | |
| CGCGGCCACTGCAAAACGAG+AGG | - | chr4_3:60452027-60452046 | Msa0652760:intron | 65.0% | |
| TCAGAGTCGGTCCGCGGTCA+CGG | - | chr4_3:60453251-60453270 | Msa0652760:CDS | 65.0% | |
| CAGAGTCGGTCCGCGGTCAC+GGG | - | chr4_3:60453252-60453271 | Msa0652760:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 60451090 | 60454250 | 60451090 | ID=Msa0652760;Name=Msa0652760 |
| chr4_3 | mRNA | 60451090 | 60454250 | 60451090 | ID=Msa0652760-mRNA-1;Parent=Msa0652760;Name=Msa0652760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=186|1|1|1|1|1|4|381|285 |
| chr4_3 | exon | 60451090 | 60451698 | 60451090 | ID=Msa0652760-mRNA-1:exon:16448;Parent=Msa0652760-mRNA-1 |
| chr4_3 | exon | 60451786 | 60451905 | 60451786 | ID=Msa0652760-mRNA-1:exon:16447;Parent=Msa0652760-mRNA-1 |
| chr4_3 | exon | 60453220 | 60453362 | 60453220 | ID=Msa0652760-mRNA-1:exon:16446;Parent=Msa0652760-mRNA-1 |
| chr4_3 | exon | 60453698 | 60454250 | 60453698 | ID=Msa0652760-mRNA-1:exon:16445;Parent=Msa0652760-mRNA-1 |
| chr4_3 | five_prime_UTR | 60454065 | 60454250 | 60454065 | ID=Msa0652760-mRNA-1:five_prime_utr;Parent=Msa0652760-mRNA-1 |
| chr4_3 | CDS | 60453698 | 60454064 | 60453698 | ID=Msa0652760-mRNA-1:cds;Parent=Msa0652760-mRNA-1 |
| chr4_3 | CDS | 60453220 | 60453362 | 60453220 | ID=Msa0652760-mRNA-1:cds;Parent=Msa0652760-mRNA-1 |
| chr4_3 | CDS | 60451786 | 60451905 | 60451786 | ID=Msa0652760-mRNA-1:cds;Parent=Msa0652760-mRNA-1 |
| chr4_3 | CDS | 60451471 | 60451698 | 60451471 | ID=Msa0652760-mRNA-1:cds;Parent=Msa0652760-mRNA-1 |
| chr4_3 | three_prime_UTR | 60451090 | 60451470 | 60451090 | ID=Msa0652760-mRNA-1:three_prime_utr;Parent=Msa0652760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
