AlfalfaGEDB | Msa0652760

M. sativa cultivar zhongmu-4 / Msa0652760

KEGG: K17879
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006104 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008893 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0010945 GO:0015936 GO:0015937 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00293.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652760	XP_013456900.1	96.154	286	10	1	1	285	1	286	0.0	558

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652760	sp\|Q8GYB1\|NUD15_ARATH	70.504	278	77	4	3	277	10	285	1.28e-129	372

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652760	A0A072UNI2	96.154	286	10	1	1	285	1	286	0.0	558

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004060	Msa0652760	0.835724	1.420768e-56	-8.615850e-47
Msa0005000	Msa0652760	-0.809210	2.118172e-50	-8.615850e-47
Msa0006880	Msa0652760	0.812472	4.166744e-51	-8.615850e-47
Msa0010770	Msa0652760	0.814140	1.792535e-51	-8.615850e-47
Msa0027390	Msa0652760	0.806143	9.492637e-50	-8.615850e-47
Msa0033880	Msa0652760	0.807837	4.157961e-50	-8.615850e-47
Msa0039250	Msa0652760	0.811903	5.546662e-51	-8.615850e-47
Msa0047250	Msa0652760	0.808817	2.570909e-50	-8.615850e-47
Msa0090030	Msa0652760	0.847185	1.357183e-59	-8.615850e-47
Msa0096580	Msa0652760	0.804101	2.538788e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652760	MtrunA17_Chr4g0046091	96.154	286	10	1	1	285	1	286	0.0	558
Msa0652760	MtrunA17_Chr2g0283341	49.145	234	90	4	29	262	1	205	5.81e-74	226

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652760	AT1G28960.3	69.825	285	81	4	3	284	10	292	1.22e-132	377
Msa0652760	AT1G28960.1	69.825	285	81	4	3	284	10	292	1.22e-132	377
Msa0652760	AT1G28960.5	69.825	285	81	4	3	284	10	292	1.22e-132	377
Msa0652760	AT1G28960.7	70.504	278	77	4	3	277	10	285	1.30e-130	372
Msa0652760	AT1G28960.6	70.504	278	77	4	3	277	10	285	1.30e-130	372
Msa0652760	AT2G33980.2	68.016	247	72	3	33	277	18	259	3.12e-114	330
Msa0652760	AT2G33980.4	68.016	247	72	3	33	277	18	259	3.12e-114	330
Msa0652760	AT2G33980.1	68.016	247	72	3	33	277	18	259	1.33e-113	330
Msa0652760	AT2G33980.3	68.016	247	72	3	33	277	18	259	3.52e-113	329
Msa0652760	AT5G45940.1	61.053	190	70	2	87	272	28	217	2.81e-79	239

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Find 98 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCTTCAGGAAAAGG+TGG	0.635918	4_3:+60453892	None:intergenic
AAAGTGATGATGGGGATCTA+AGG	0.334445	4_3:-60453741	Msa0652760:CDS
AACCTGTGGAACTTTGAATT+TGG	0.148694	4_3:+60451498	None:intergenic
AAGTCTCTGAGATCCACCAG+TGG	0.760789	4_3:+60453954	None:intergenic
AAGTGATGATGGGGATCTAA+GGG	0.540717	4_3:-60453740	Msa0652760:CDS
AATAACAATTTGATACTATA+GGG	0.401857	4_3:-60454115	Msa0652760:five_prime_UTR
AATACTGATTCCACTTCTGC+AGG	0.466410	4_3:+60451814	None:intergenic
AATTGTGTACAAACGGCCAC+CGG	0.564192	4_3:-60451539	Msa0652760:CDS
ACAAAGATTTCATTCCGACA+AGG	0.669608	4_3:-60454205	Msa0652760:five_prime_UTR
ACAATTTGATACTATAGGGT+AGG	0.599534	4_3:-60454111	Msa0652760:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAGCAGTTTAATGTTTGA+AGG	+	chr4_3:60451145-60451164	None:intergenic	30.0%
TTGCAAAAGCTAATCTAAAC+CGG	+	chr4_3:60451180-60451199	None:intergenic	30.0%
ACAATTTGATACTATAGGGT+AGG	-	chr4_3:60451207-60451226	Msa0652760:three_prime_UTR	30.0%
AATTTAGAGGGAATGAATTG+AGG	-	chr4_3:60451925-60451944	Msa0652760:intron	30.0%
ATTTAGAGGGAATGAATTGA+GGG	-	chr4_3:60451926-60451945	Msa0652760:intron	30.0%
ATAGATACCTTAGACAAGAA+TGG	+	chr4_3:60452109-60452128	None:intergenic	30.0%
TTAATTGAGTATTCTCCACT+TGG	-	chr4_3:60452165-60452184	Msa0652760:intron	30.0%
AAATTTATGTCTGCGATTGA+TGG	-	chr4_3:60452205-60452224	Msa0652760:intron	30.0%
CCAAGACAACAATCATAATA+AGG	+	chr4_3:60452549-60452568	None:intergenic	30.0%
CCTTATTATGATTGTTGTCT+TGG	-	chr4_3:60452546-60452565	Msa0652760:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	60451090	60454250	60451090	ID=Msa0652760;Name=Msa0652760
chr4_3	mRNA	60451090	60454250	60451090	ID=Msa0652760-mRNA-1;Parent=Msa0652760;Name=Msa0652760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=186\|1\|1\|1\|1\|1\|4\|381\|285
chr4_3	exon	60451090	60451698	60451090	ID=Msa0652760-mRNA-1:exon:16448;Parent=Msa0652760-mRNA-1
chr4_3	exon	60451786	60451905	60451786	ID=Msa0652760-mRNA-1:exon:16447;Parent=Msa0652760-mRNA-1
chr4_3	exon	60453220	60453362	60453220	ID=Msa0652760-mRNA-1:exon:16446;Parent=Msa0652760-mRNA-1
chr4_3	exon	60453698	60454250	60453698	ID=Msa0652760-mRNA-1:exon:16445;Parent=Msa0652760-mRNA-1
chr4_3	five_prime_UTR	60454065	60454250	60454065	ID=Msa0652760-mRNA-1:five_prime_utr;Parent=Msa0652760-mRNA-1
chr4_3	CDS	60453698	60454064	60453698	ID=Msa0652760-mRNA-1:cds;Parent=Msa0652760-mRNA-1
chr4_3	CDS	60453220	60453362	60453220	ID=Msa0652760-mRNA-1:cds;Parent=Msa0652760-mRNA-1
chr4_3	CDS	60451786	60451905	60451786	ID=Msa0652760-mRNA-1:cds;Parent=Msa0652760-mRNA-1
chr4_3	CDS	60451471	60451698	60451471	ID=Msa0652760-mRNA-1:cds;Parent=Msa0652760-mRNA-1
chr4_3	three_prime_UTR	60451090	60451470	60451090	ID=Msa0652760-mRNA-1:three_prime_utr;Parent=Msa0652760-mRNA-1

Gene Sequence

>Msa0652760

ATGAATTCAATTCTAAGAACAATAACAACAACGTTAATACCAAGAACAGTATCTGTCACCAAAGTCATGGATTCTTCTTCCAACGTTACCACTGGTGGATCTCAGAGACTTCTTGCGTTGGCACAACATCTTCGTCTCTACAAGCCACCACCACCTTTTCCTGAAGATGTTTTGGAACAGAGCATTGAAGAGAGTGGTGGCAAAGTTGTTTCTCAATTGGGTTTTCCTGAATCAGCTACCATGATTCAAAATCCAGATAATTTTAGTCCTAAAAAAGCTGCTGTTTTGATTTGTTTATTTGAAAGTGATGATGGGGATCTAAGGGTTATTCTCACTAAACGATCTTCCAAGCTCTCTACTCACTCAGGTGAAGTGTCATTGCCTGGTGGGAAAGCGGAGGAAGGGGATAAGGACGACGCGGCCACTGCAAAACGAGAGGCAGAAGAGGAAATTGGGTTGGATCCAAAACTAGTCAATGTTGTTACTGTTCTTGAACCATTCTTGTCTAAGCACCTCCTAAGAGTAGTTCCTGTCATCGGCATACTTCATGATAAGAAAGCGTTCAAACCTGTTCTGAATCCTGCAGAAGTGGAATCAGTATTTGACGCACCTTTAGAAATGTTTCTCAAGGATGAAAATCGGAGTCAGGAAGAGAGAGAGTGGATGGGAGAGAAGTATTTGATACATTTTTTTGACTATATTGACATCGAGCAGAAAAAATATCTCATATGGGGATTGACTGCCGGAATTTTGATTAGGGCTGCATCAATTGTGTACAAACGGCCACCGGCTTTCATAGAGCAGAATCCCAAATTCAAAGTTCCACAGGTTGTAAGCAAGGATAGTTCAATGACTTGA

Protein sequence

>Msa0652760

MNSILRTITTTLIPRTVSVTKVMDSSSNVTTGGSQRLLALAQHLRLYKPPPPFPEDVLEQSIEESGGKVVSQLGFPESATMIQNPDNFSPKKAAVLICLFESDDGDLRVILTKRSSKLSTHSGEVSLPGGKAEEGDKDDAATAKREAEEEIGLDPKLVNVVTVLEPFLSKHLLRVVPVIGILHDKKAFKPVLNPAEVESVFDAPLEMFLKDENRSQEEREWMGEKYLIHFFDYIDIEQKKYLIWGLTAGILIRAASIVYKRPPAFIEQNPKFKVPQVVSKDSSMT*