Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659520 | XP_003630349.2 | 91.697 | 542 | 15 | 1 | 1 | 512 | 1 | 542 | 0.0 | 1010 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659520 | sp|Q8W033|AL3I1_ARATH | 58.000 | 550 | 182 | 4 | 1 | 512 | 10 | 548 | 0.0 | 637 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659520 | G7LF15 | 91.697 | 542 | 15 | 1 | 1 | 512 | 1 | 542 | 0.0 | 1010 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa0659520 | 0.805097 | 1.573485e-49 | -8.615850e-47 |
| Msa0020320 | Msa0659520 | 0.807631 | 4.599409e-50 | -8.615850e-47 |
| Msa0059880 | Msa0659520 | -0.808841 | 2.540006e-50 | -8.615850e-47 |
| Msa0064550 | Msa0659520 | 0.804174 | 2.452221e-49 | -8.615850e-47 |
| Msa0072830 | Msa0659520 | 0.810850 | 9.390921e-51 | -8.615850e-47 |
| Msa0072860 | Msa0659520 | 0.812017 | 5.239278e-51 | -8.615850e-47 |
| Msa0116510 | Msa0659520 | 0.815323 | 9.805315e-52 | -8.615850e-47 |
| Msa0605250 | Msa0659520 | 0.809742 | 1.628289e-50 | -8.615850e-47 |
| Msa0619390 | Msa0659520 | 0.822537 | 2.246233e-53 | -8.615850e-47 |
| Msa0622250 | Msa0659520 | 0.818796 | 1.626025e-52 | -8.615850e-47 |
| Msa0627050 | Msa0659520 | 0.807858 | 4.115636e-50 | -8.615850e-47 |
| Msa0645410 | Msa0659520 | 0.800053 | 1.726502e-48 | -8.615850e-47 |
| Msa0651310 | Msa0659520 | 0.819265 | 1.271674e-52 | -8.615850e-47 |
| Msa0659520 | Msa0679780 | 0.839154 | 1.877839e-57 | -8.615850e-47 |
| Msa0659520 | Msa0681210 | 0.823130 | 1.634823e-53 | -8.615850e-47 |
| Msa0659520 | Msa0693400 | 0.835651 | 1.482059e-56 | -8.615850e-47 |
| Msa0659520 | Msa0702200 | 0.815679 | 8.170631e-52 | -8.615850e-47 |
| Msa0659520 | Msa0702310 | 0.817219 | 3.694164e-52 | -8.615850e-47 |
| Msa0659520 | Msa0702620 | 0.823104 | 1.658033e-53 | -8.615850e-47 |
| Msa0659520 | Msa0705810 | 0.808654 | 2.785709e-50 | -8.615850e-47 |
| Msa0659520 | Msa0747900 | 0.817350 | 3.451226e-52 | -8.615850e-47 |
| Msa0659520 | Msa0748330 | 0.815638 | 8.342039e-52 | -8.615850e-47 |
| Msa0659520 | Msa0748980 | 0.834484 | 2.918306e-56 | -8.615850e-47 |
| Msa0659520 | Msa0766030 | 0.805735 | 1.156454e-49 | -8.615850e-47 |
| Msa0659520 | Msa0790640 | 0.813939 | 1.985422e-51 | -8.615850e-47 |
| Msa0659520 | Msa0795400 | 0.801068 | 1.072088e-48 | -8.615850e-47 |
| Msa0659520 | Msa0813630 | 0.804617 | 1.981933e-49 | -8.615850e-47 |
| Msa0659520 | Msa0825520 | 0.835344 | 1.771876e-56 | -8.615850e-47 |
| Msa0659520 | Msa0864730 | 0.835667 | 1.468146e-56 | -8.615850e-47 |
| Msa0659520 | Msa0864750 | 0.838712 | 2.442753e-57 | -8.615850e-47 |
| Msa0659520 | Msa0871470 | 0.818048 | 2.402268e-52 | -8.615850e-47 |
| Msa0659520 | Msa0884300 | 0.810971 | 8.838894e-51 | -8.615850e-47 |
| Msa0659520 | Msa0899730 | 0.800047 | 1.730850e-48 | -8.615850e-47 |
| Msa0659520 | Msa0904630 | 0.818603 | 1.798744e-52 | -8.615850e-47 |
| Msa0659520 | Msa0936650 | 0.815398 | 9.435912e-52 | -8.615850e-47 |
| Msa0659520 | Msa0964650 | 0.806255 | 8.991234e-50 | -8.615850e-47 |
| Msa0659520 | Msa0968960 | 0.802494 | 5.463683e-49 | -8.615850e-47 |
| Msa0659520 | Msa0973890 | 0.831629 | 1.497699e-55 | -8.615850e-47 |
| Msa0659520 | Msa0984000 | 0.835201 | 1.926201e-56 | -8.615850e-47 |
| Msa0659520 | Msa0999480 | 0.824912 | 6.240561e-54 | -8.615850e-47 |
| Msa0659520 | Msa1055360 | 0.803931 | 2.753713e-49 | -8.615850e-47 |
| Msa0659520 | Msa1067910 | 0.826917 | 2.085153e-54 | -8.615850e-47 |
| Msa0659520 | Msa1076520 | 0.821454 | 4.003387e-53 | -8.615850e-47 |
| Msa0659520 | Msa1085370 | 0.807990 | 3.857751e-50 | -8.615850e-47 |
| Msa0659520 | Msa1106320 | 0.800877 | 1.172888e-48 | -8.615850e-47 |
| Msa0659520 | Msa1113210 | 0.802740 | 4.859896e-49 | -8.615850e-47 |
| Msa0659520 | Msa1144730 | 0.815731 | 7.956165e-52 | -8.615850e-47 |
| Msa0659520 | Msa1173380 | 0.810294 | 1.238306e-50 | -8.615850e-47 |
| Msa0659520 | Msa1182800 | 0.813016 | 3.167435e-51 | -8.615850e-47 |
| Msa0659520 | Msa1182830 | 0.822093 | 2.847649e-53 | -8.615850e-47 |
| Msa0659520 | Msa1193430 | 0.803005 | 4.285412e-49 | -8.615850e-47 |
| Msa0659520 | Msa1211390 | 0.812598 | 3.912312e-51 | -8.615850e-47 |
| Msa0659520 | Msa1219780 | -0.821604 | 3.696950e-53 | -8.615850e-47 |
| Msa0659520 | Msa1243730 | 0.810328 | 1.217151e-50 | -8.615850e-47 |
| Msa0659520 | Msa1248220 | 0.806294 | 8.821332e-50 | -8.615850e-47 |
| Msa0659520 | Msa1266710 | -0.812528 | 4.052354e-51 | -8.615850e-47 |
| Msa0659520 | Msa1272950 | 0.834440 | 2.993668e-56 | -8.615850e-47 |
| Msa0659520 | Msa1288970 | 0.810739 | 9.923183e-51 | -8.615850e-47 |
| Msa0659520 | Msa1306200 | 0.809925 | 1.487158e-50 | -8.615850e-47 |
| Msa0659520 | Msa1349810 | 0.846397 | 2.228488e-59 | -8.615850e-47 |
| Msa0659520 | Msa1356730 | 0.826581 | 2.508599e-54 | -8.615850e-47 |
| Msa0659520 | Msa1358340 | 0.810538 | 1.096491e-50 | -8.615850e-47 |
| Msa0659520 | Msa1359620 | 0.802833 | 4.651174e-49 | -8.615850e-47 |
| Msa0659520 | Msa1369180 | 0.808130 | 3.602478e-50 | -8.615850e-47 |
| Msa0659520 | Msa1384620 | 0.836458 | 9.247086e-57 | -8.615850e-47 |
| Msa0659520 | Msa1395580 | 0.832660 | 8.327018e-56 | -8.615850e-47 |
| Msa0659520 | Msa1403700 | 0.802373 | 5.784465e-49 | -8.615850e-47 |
| Msa0659520 | Msa1407210 | -0.819660 | 1.033629e-52 | -8.615850e-47 |
| Msa0659520 | Msa1427600 | 0.804143 | 2.488413e-49 | -8.615850e-47 |
| Msa0659520 | Msa1439070 | 0.812143 | 4.917766e-51 | -8.615850e-47 |
| Msa0659520 | Msa1443550 | 0.813895 | 2.030348e-51 | -8.615850e-47 |
| Msa0659520 | Msa1453540 | 0.801040 | 1.086296e-48 | -8.615850e-47 |
| Msa0131090 | Msa0659520 | 0.808444 | 3.087802e-50 | -8.615850e-47 |
| Msa0147800 | Msa0659520 | 0.804946 | 1.692212e-49 | -8.615850e-47 |
| Msa0154220 | Msa0659520 | 0.801471 | 8.863179e-49 | -8.615850e-47 |
| Msa0154240 | Msa0659520 | 0.835475 | 1.641971e-56 | -8.615850e-47 |
| Msa0154270 | Msa0659520 | 0.820436 | 6.864545e-53 | -8.615850e-47 |
| Msa0163530 | Msa0659520 | 0.808553 | 2.927297e-50 | -8.615850e-47 |
| Msa0216210 | Msa0659520 | 0.807866 | 4.100017e-50 | -8.615850e-47 |
| Msa0369100 | Msa0659520 | 0.806643 | 7.445778e-50 | -8.615850e-47 |
| Msa0392050 | Msa0659520 | 0.814619 | 1.404695e-51 | -8.615850e-47 |
| Msa0401340 | Msa0659520 | 0.800895 | 1.162626e-48 | -8.615850e-47 |
| Msa0404690 | Msa0659520 | 0.818282 | 2.125882e-52 | -8.615850e-47 |
| Msa0415200 | Msa0659520 | 0.800086 | 1.699802e-48 | -8.615850e-47 |
| Msa0416540 | Msa0659520 | 0.822635 | 2.131479e-53 | -8.615850e-47 |
| Msa0448120 | Msa0659520 | 0.815431 | 9.278573e-52 | -8.615850e-47 |
| Msa0463150 | Msa0659520 | 0.812062 | 5.122473e-51 | -8.615850e-47 |
| Msa0469950 | Msa0659520 | 0.814957 | 1.182255e-51 | -8.615850e-47 |
| Msa0239610 | Msa0659520 | 0.813772 | 2.161471e-51 | -8.615850e-47 |
| Msa0260190 | Msa0659520 | 0.824096 | 9.712576e-54 | -8.615850e-47 |
| Msa0270460 | Msa0659520 | 0.804273 | 2.338172e-49 | -8.615850e-47 |
| Msa0341190 | Msa0659520 | 0.801338 | 9.440590e-49 | -8.615850e-47 |
| Msa0343370 | Msa0659520 | 0.801540 | 8.582809e-49 | -8.615850e-47 |
| Msa0344680 | Msa0659520 | 0.815504 | 8.936528e-52 | -8.615850e-47 |
| Msa0354390 | Msa0659520 | 0.807691 | 4.467292e-50 | -8.615850e-47 |
| Msa0530340 | Msa0659520 | 0.804429 | 2.169004e-49 | -8.615850e-47 |
| Msa0545230 | Msa0659520 | 0.800656 | 1.300784e-48 | -8.615850e-47 |
| Msa0546080 | Msa0659520 | 0.818818 | 1.607345e-52 | -8.615850e-47 |
| Msa0556070 | Msa0659520 | 0.829216 | 5.827052e-55 | -8.615850e-47 |
| Msa0565760 | Msa0659520 | 0.805045 | 1.613018e-49 | -8.615850e-47 |
| Msa0566010 | Msa0659520 | 0.806122 | 9.587073e-50 | -8.615850e-47 |
| Msa0577050 | Msa0659520 | 0.837972 | 3.790161e-57 | -8.615850e-47 |
| Msa0584280 | Msa0659520 | 0.803230 | 3.849430e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659520 | MtrunA17_Chr8g0384741 | 91.697 | 542 | 15 | 1 | 1 | 512 | 1 | 542 | 0.0 | 1010 |
| Msa0659520 | MtrunA17_Chr3g0124811 | 62.653 | 490 | 153 | 2 | 52 | 511 | 1 | 490 | 0.0 | 652 |
| Msa0659520 | MtrunA17_Chr1g0159811 | 63.333 | 420 | 124 | 2 | 56 | 445 | 3 | 422 | 0.0 | 558 |
| Msa0659520 | MtrunA17_Chr8g0372381 | 45.708 | 466 | 223 | 2 | 73 | 508 | 13 | 478 | 4.11e-147 | 431 |
| Msa0659520 | MtrunA17_Chr2g0328781 | 45.094 | 479 | 230 | 3 | 64 | 509 | 15 | 493 | 2.74e-144 | 424 |
| Msa0659520 | MtrunA17_Chr4g0032441 | 48.253 | 458 | 204 | 4 | 73 | 497 | 9 | 466 | 3.64e-130 | 387 |
| Msa0659520 | MtrunA17_Chr3g0129271 | 44.022 | 184 | 100 | 1 | 211 | 391 | 36 | 219 | 2.14e-48 | 168 |
| Msa0659520 | MtrunA17_Chr2g0310091 | 29.310 | 348 | 237 | 7 | 135 | 476 | 193 | 537 | 2.83e-40 | 152 |
| Msa0659520 | MtrunA17_Chr2g0294411 | 26.872 | 454 | 294 | 12 | 81 | 508 | 135 | 576 | 1.28e-38 | 149 |
| Msa0659520 | MtrunA17_Chr4g0059521 | 30.641 | 359 | 238 | 8 | 133 | 483 | 145 | 500 | 2.92e-35 | 138 |
| Msa0659520 | MtrunA17_Chr3g0118121 | 30.423 | 355 | 234 | 7 | 122 | 468 | 136 | 485 | 4.88e-34 | 134 |
| Msa0659520 | MtrunA17_Chr4g0059221 | 28.571 | 343 | 235 | 7 | 134 | 469 | 196 | 535 | 1.53e-32 | 130 |
| Msa0659520 | MtrunA17_Chr3g0118081 | 29.825 | 342 | 229 | 6 | 135 | 468 | 177 | 515 | 1.66e-32 | 130 |
| Msa0659520 | MtrunA17_Chr3g0117861 | 29.598 | 348 | 225 | 8 | 134 | 469 | 194 | 533 | 1.48e-30 | 125 |
| Msa0659520 | MtrunA17_Chr8g0390651 | 27.536 | 345 | 240 | 8 | 138 | 475 | 159 | 500 | 9.85e-30 | 122 |
| Msa0659520 | MtrunA17_Chr8g0365221 | 27.586 | 348 | 240 | 9 | 130 | 469 | 189 | 532 | 3.18e-29 | 121 |
| Msa0659520 | MtrunA17_Chr6g0485301 | 28.000 | 350 | 242 | 7 | 133 | 475 | 153 | 499 | 2.98e-28 | 117 |
| Msa0659520 | MtrunA17_Chr8g0390631 | 26.571 | 350 | 247 | 7 | 133 | 475 | 145 | 491 | 8.72e-27 | 113 |
| Msa0659520 | MtrunA17_Chr6g0485311 | 27.246 | 345 | 241 | 7 | 138 | 475 | 156 | 497 | 1.50e-26 | 112 |
| Msa0659520 | MtrunA17_Chr2g0279751 | 26.750 | 400 | 268 | 12 | 103 | 488 | 121 | 509 | 5.39e-24 | 105 |
| Msa0659520 | MtrunA17_Chr4g0049641 | 28.045 | 353 | 236 | 9 | 136 | 475 | 174 | 521 | 2.80e-23 | 103 |
| Msa0659520 | MtrunA17_Chr4g0009161 | 45.133 | 113 | 56 | 3 | 202 | 310 | 114 | 224 | 3.44e-23 | 98.2 |
| Msa0659520 | MtrunA17_Chr4g0074171 | 27.500 | 320 | 215 | 8 | 139 | 451 | 158 | 467 | 3.28e-22 | 99.8 |
| Msa0659520 | MtrunA17_Chr1g0149961 | 26.875 | 320 | 217 | 8 | 139 | 451 | 158 | 467 | 5.75e-21 | 95.9 |
| Msa0659520 | MtrunA17_Chr2g0300801 | 22.515 | 342 | 253 | 9 | 136 | 467 | 152 | 491 | 2.79e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0659520 | AT4G34240.1 | 58.000 | 550 | 182 | 4 | 1 | 512 | 10 | 548 | 0.0 | 637 |
| Msa0659520 | AT4G34240.4 | 59.772 | 527 | 171 | 3 | 16 | 512 | 18 | 533 | 0.0 | 634 |
| Msa0659520 | AT1G44170.1 | 59.290 | 479 | 165 | 2 | 61 | 509 | 4 | 482 | 0.0 | 605 |
| Msa0659520 | AT1G44170.2 | 59.290 | 479 | 165 | 2 | 61 | 509 | 4 | 482 | 0.0 | 605 |
| Msa0659520 | AT4G34240.3 | 67.822 | 404 | 130 | 0 | 109 | 512 | 3 | 406 | 0.0 | 580 |
| Msa0659520 | AT1G44170.3 | 63.221 | 416 | 153 | 0 | 94 | 509 | 4 | 419 | 0.0 | 577 |
| Msa0659520 | AT4G36250.1 | 45.666 | 473 | 224 | 4 | 73 | 512 | 12 | 484 | 6.04e-147 | 430 |
| Msa0659520 | AT4G34240.2 | 56.122 | 392 | 123 | 4 | 1 | 354 | 10 | 390 | 2.70e-140 | 410 |
| Msa0659520 | AT1G79440.1 | 32.551 | 341 | 219 | 9 | 135 | 468 | 184 | 520 | 2.45e-41 | 155 |
| Msa0659520 | AT3G66658.2 | 27.594 | 453 | 292 | 11 | 81 | 508 | 135 | 576 | 3.73e-41 | 156 |
| Msa0659520 | AT3G66658.1 | 27.941 | 408 | 269 | 8 | 81 | 473 | 135 | 532 | 8.30e-41 | 154 |
| Msa0659520 | AT1G74920.2 | 31.215 | 362 | 235 | 10 | 122 | 474 | 131 | 487 | 3.52e-37 | 144 |
| Msa0659520 | AT1G74920.1 | 31.215 | 362 | 235 | 10 | 122 | 474 | 136 | 492 | 3.73e-37 | 144 |
| Msa0659520 | AT3G48170.1 | 28.291 | 357 | 245 | 8 | 135 | 483 | 147 | 500 | 4.17e-31 | 126 |
| Msa0659520 | AT1G23800.1 | 27.666 | 347 | 241 | 8 | 130 | 469 | 182 | 525 | 2.58e-29 | 121 |
| Msa0659520 | AT3G48000.1 | 25.959 | 443 | 284 | 12 | 65 | 469 | 93 | 529 | 2.13e-28 | 119 |
| Msa0659520 | AT3G24503.1 | 26.686 | 341 | 240 | 7 | 136 | 469 | 155 | 492 | 7.68e-27 | 114 |
| Msa0659520 | AT2G14170.2 | 27.446 | 368 | 247 | 11 | 136 | 489 | 137 | 498 | 5.91e-20 | 93.2 |
| Msa0659520 | AT2G14170.1 | 27.642 | 369 | 245 | 12 | 136 | 489 | 246 | 607 | 6.21e-20 | 93.6 |
| Msa0659520 | AT2G24270.2 | 25.705 | 319 | 222 | 7 | 139 | 451 | 198 | 507 | 1.20e-19 | 92.4 |
| Msa0659520 | AT2G24270.3 | 25.705 | 319 | 222 | 7 | 139 | 451 | 158 | 467 | 2.13e-19 | 91.7 |
| Msa0659520 | AT2G24270.1 | 25.705 | 319 | 222 | 7 | 139 | 451 | 158 | 467 | 2.13e-19 | 91.7 |
| Msa0659520 | AT2G24270.4 | 25.705 | 319 | 222 | 7 | 139 | 451 | 158 | 467 | 2.17e-19 | 91.7 |
| Msa0659520 | AT2G14170.3 | 27.778 | 306 | 204 | 9 | 136 | 429 | 246 | 546 | 2.13e-18 | 89.0 |
| Msa0659520 | AT1G54100.2 | 24.189 | 339 | 245 | 9 | 139 | 467 | 154 | 490 | 3.27e-18 | 87.8 |
| Msa0659520 | AT1G54100.1 | 24.189 | 339 | 245 | 9 | 139 | 467 | 154 | 490 | 3.27e-18 | 87.8 |
| Msa0659520 | AT1G23800.2 | 35.185 | 162 | 95 | 4 | 130 | 281 | 182 | 343 | 1.40e-15 | 79.3 |
Find 130 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTAGAAATAGCATTTA+AGG | 0.092109 | 4_3:+69924450 | None:intergenic |
| TACACAGATAGCAGCTTTAA+AGG | 0.191916 | 4_3:-69921621 | Msa0659520:intron |
| GTTATGCAAGAGGAGATATT+TGG | 0.197595 | 4_3:-69921307 | Msa0659520:CDS |
| GATTGCTCCAACTATCTTAT+TGG | 0.199481 | 4_3:-69921350 | Msa0659520:CDS |
| TCCAGGAGTGCAGTTGTTTC+AGG | 0.225324 | 4_3:+69922539 | None:intergenic |
| AGTATATGGTTGGTGAAGTT+TGG | 0.247638 | 4_3:+69924621 | None:intergenic |
| ACAGTAATAATTGGCAAAAT+TGG | 0.249721 | 4_3:+69921283 | None:intergenic |
| GCAACTCGTGGTTTGCCTTT+TGG | 0.265536 | 4_3:-69920430 | Msa0659520:CDS |
| AGCAGCTTTAAAGGAAGAAT+TGG | 0.292732 | 4_3:-69921612 | Msa0659520:CDS |
| GAAATAGCATTTAAGGTTGT+TGG | 0.314227 | 4_3:+69924457 | None:intergenic |
| ATTTAAGGACGAAAAGTATA+TGG | 0.319662 | 4_3:+69924607 | None:intergenic |
| ATGGTACTCACAGTAATAAT+TGG | 0.320472 | 4_3:+69921274 | None:intergenic |
| CACTGCGTTGCCCGCGGAAA+TGG | 0.344228 | 4_3:+69922667 | None:intergenic |
| CCATGGACTCACTTTAAGTT+AGG | 0.361327 | 4_3:-69924535 | Msa0659520:five_prime_UTR |
| GAAAATAAACAAGTATTTGA+TGG | 0.363766 | 4_3:-69923971 | Msa0659520:CDS |
| TCCTGAAACAACTGCACTCC+TGG | 0.366164 | 4_3:-69922540 | Msa0659520:CDS |
| GTAAATTTATTCACAGTGAT+TGG | 0.372635 | 4_3:+69920071 | None:intergenic |
| TTTCCTTCTCAGGTGTATAT+GGG | 0.372663 | 4_3:+69920290 | None:intergenic |
| AAAGTATCTTATCCCACTTC+TGG | 0.373046 | 4_3:+69922516 | None:intergenic |
| GTATATGGTTGGTGAAGTTT+GGG | 0.386054 | 4_3:+69924622 | None:intergenic |
| AGATATGCAGCCAGAGGCTT+TGG | 0.388757 | 4_3:+69921131 | None:intergenic |
| TCTTAACTATGGCCTCCAAT+TGG | 0.389280 | 4_3:+69923867 | None:intergenic |
| CAGATAATTCTTGCATTGCT+TGG | 0.389517 | 4_3:-69920232 | Msa0659520:CDS |
| CGAATGGCGGATTTCCCAAT+TGG | 0.395995 | 4_3:-69923882 | Msa0659520:CDS |
| TCTCAGTTTCTGATCTCTGA+TGG | 0.405864 | 4_3:-69920157 | Msa0659520:intron |
| GCAAGCAGGGATGATGTTGC+AGG | 0.410513 | 4_3:+69922620 | None:intergenic |
| ATTCACAGTGATTGGGACTC+TGG | 0.412341 | 4_3:+69920079 | None:intergenic |
| CTCAGTTTCTGATCTCTGAT+GGG | 0.413740 | 4_3:-69920156 | Msa0659520:intron |
| TATGTGGACAAGATATCTTC+TGG | 0.414474 | 4_3:-69921077 | Msa0659520:CDS |
| GCGGAAATGGCTCCAATGAC+TGG | 0.421715 | 4_3:+69922680 | None:intergenic |
| TTATCATTGGATCCAGTCAT+TGG | 0.424102 | 4_3:-69922692 | Msa0659520:CDS |
| GGAGGATAATAGCTGGCAAA+TGG | 0.425073 | 4_3:-69921784 | Msa0659520:CDS |
| CCTACCTGCAGTGTTATCAT+TGG | 0.425905 | 4_3:-69922705 | Msa0659520:intron |
| TAAATTTATTCACAGTGATT+GGG | 0.428112 | 4_3:+69920072 | None:intergenic |
| CTTAACTATGGCCTCCAATT+GGG | 0.433668 | 4_3:+69923868 | None:intergenic |
| CAGAGTAGGTCGCATTGTTA+TGG | 0.434535 | 4_3:-69921985 | Msa0659520:CDS |
| TAATTCTTGCATTGCTTGGA+TGG | 0.440924 | 4_3:-69920228 | Msa0659520:CDS |
| AAAATCAAGGCCAAAGCCTC+TGG | 0.443072 | 4_3:-69921141 | Msa0659520:CDS |
| CATAACAATGCGACCTACTC+TGG | 0.447475 | 4_3:+69921986 | None:intergenic |
| GGCAAATGGGCATGCAATAG+TGG | 0.448828 | 4_3:-69921770 | Msa0659520:CDS |
| GACACAATCTCTGCCGATGA+TGG | 0.454286 | 4_3:+69923134 | None:intergenic |
| AGAGTTGAAATGAAGTTGCT+TGG | 0.457326 | 4_3:+69924157 | None:intergenic |
| TTATGCAAGAGGAGATATTT+GGG | 0.457790 | 4_3:-69921306 | Msa0659520:CDS |
| GAAACTCTTGAATGAGGATA+AGG | 0.463840 | 4_3:-69921510 | Msa0659520:CDS |
| ACTCCAGTGATTCTTGAGCT+TGG | 0.463911 | 4_3:-69921942 | Msa0659520:CDS |
| CAAGGTTTGAGGAAGAACTT+TGG | 0.464714 | 4_3:+69924392 | None:intergenic |
| TTTCTAGCAAATTTGCAAGC+AGG | 0.466192 | 4_3:+69922606 | None:intergenic |
| GGTTGGTGAAGTTTGGGTAA+TGG | 0.468925 | 4_3:+69924628 | None:intergenic |
| CTTTGCTTGTTAGAGAGCTC+AGG | 0.469563 | 4_3:-69923937 | Msa0659520:CDS |
| GTCATTGGAGCCATTTCCGC+GGG | 0.470626 | 4_3:-69922677 | Msa0659520:CDS |
| TTTGGAGGAGTTGGAGAAAG+TGG | 0.471512 | 4_3:-69920412 | Msa0659520:CDS |
| TTCTAGCAAATTTGCAAGCA+GGG | 0.472320 | 4_3:+69922607 | None:intergenic |
| ACAATTTCTTCTCATCCCTC+TGG | 0.477886 | 4_3:+69921462 | None:intergenic |
| ACATTTGAATCAACAACAGC+TGG | 0.482725 | 4_3:+69921909 | None:intergenic |
| TTCCGCCATTGCTTGCTCCT+AGG | 0.482912 | 4_3:-69924346 | Msa0659520:intron |
| TTCCTTCTCAGGTGTATATG+GGG | 0.487465 | 4_3:+69920291 | None:intergenic |
| TTGATTCCGATCCATCCATA+AGG | 0.490072 | 4_3:-69920318 | Msa0659520:CDS |
| TCTTATCCCACTTCTGGTCC+AGG | 0.490487 | 4_3:+69922522 | None:intergenic |
| ACGAGTCGTGCATATTGAGT+TGG | 0.490817 | 4_3:+69921533 | None:intergenic |
| GGAGTTGGAGAAAGTGGAAT+GGG | 0.490988 | 4_3:-69920406 | Msa0659520:CDS |
| CACTTCAAGAACTGAAACAC+TGG | 0.491328 | 4_3:-69923273 | Msa0659520:CDS |
| TAAGGTTGTTGGTGATAATG+AGG | 0.491634 | 4_3:+69924468 | None:intergenic |
| CAAAGGCTCTGCTACCAACC+AGG | 0.493432 | 4_3:+69924207 | None:intergenic |
| GAGTTGAAATGAAGTTGCTT+GGG | 0.495918 | 4_3:+69924158 | None:intergenic |
| GGAACATCCAATAAGATAGT+TGG | 0.497071 | 4_3:+69921343 | None:intergenic |
| CAACACAACTCCTAGTGGTT+CGG | 0.497401 | 4_3:+69923112 | None:intergenic |
| CCTCCAAGCTCAAGAATCAC+TGG | 0.501775 | 4_3:+69921939 | None:intergenic |
| CTGCACTCCTGGACCAGAAG+TGG | 0.504845 | 4_3:-69922529 | Msa0659520:CDS |
| AGAGCCAATCTTACAAGCGT+TGG | 0.514311 | 4_3:+69921698 | None:intergenic |
| AAACAATGAGCAACTTAAGA+AGG | 0.515763 | 4_3:-69921102 | Msa0659520:CDS |
| TGTTGTTAAATTGTTTGCAA+AGG | 0.518370 | 4_3:+69924190 | None:intergenic |
| AGTTCTTCATAACAGTGCCC+TGG | 0.518511 | 4_3:-69924225 | Msa0659520:intron |
| AGTGGAATGGGTTGCTACCA+TGG | 0.521895 | 4_3:-69920394 | Msa0659520:CDS |
| GGATGTTCCACAAGAAGCTA+TGG | 0.525082 | 4_3:-69921329 | Msa0659520:CDS |
| TGCATAACCATAGCTTCTTG+TGG | 0.525176 | 4_3:+69921322 | None:intergenic |
| TCATAGTAAAACAAGGTTTG+AGG | 0.525805 | 4_3:+69924381 | None:intergenic |
| GAGGATAATAGCTGGCAAAT+GGG | 0.531521 | 4_3:-69921783 | Msa0659520:CDS |
| TATATAAAACTGATTTCTTG+TGG | 0.533181 | 4_3:+69920347 | None:intergenic |
| ATGGCGGATTTCCCAATTGG+AGG | 0.535856 | 4_3:-69923879 | Msa0659520:CDS |
| TCTGCAGTAAGAGTTGTTGA+AGG | 0.537984 | 4_3:-69922569 | Msa0659520:CDS |
| CATCACATGAAGATTTCGCC+TGG | 0.539665 | 4_3:+69923299 | None:intergenic |
| TGAGGAAGAACTTTGGTGGT+CGG | 0.540232 | 4_3:+69924399 | None:intergenic |
| CCAGTGATTCTTGAGCTTGG+AGG | 0.540889 | 4_3:-69921939 | Msa0659520:CDS |
| CTTTCTCCAACTCCTCCAAA+AGG | 0.541724 | 4_3:+69920415 | None:intergenic |
| AATCACAGCATTTCCATCAT+CGG | 0.543138 | 4_3:-69923147 | Msa0659520:CDS |
| TCCTTCTCAGGTGTATATGG+GGG | 0.544765 | 4_3:+69920292 | None:intergenic |
| ACAAGTATTTGATGGAGAGA+AGG | 0.548759 | 4_3:-69923963 | Msa0659520:CDS |
| AAGGACGAAAAGTATATGGT+TGG | 0.549183 | 4_3:+69924611 | None:intergenic |
| ACACTGGATGAAACCTGAAA+AGG | 0.549602 | 4_3:-69923257 | Msa0659520:intron |
| AAGAACTTTGGTGGTCGGAT+AGG | 0.549745 | 4_3:+69924404 | None:intergenic |
| AGGAGTTGGAGAAAGTGGAA+TGG | 0.554064 | 4_3:-69920407 | Msa0659520:CDS |
| AGATTATGCAACATAGTCCA+TGG | 0.555313 | 4_3:-69924552 | Msa0659520:five_prime_UTR |
| GTGAAGTTTGGGTAATGGAA+AGG | 0.557326 | 4_3:+69924633 | None:intergenic |
| CCTAACTTAAAGTGAGTCCA+TGG | 0.563870 | 4_3:+69924535 | None:intergenic |
| GCAACTTAAGAAGGATTATG+TGG | 0.567048 | 4_3:-69921093 | Msa0659520:CDS |
| TATCAAAAGAGAACTTTCCA+TGG | 0.574054 | 4_3:+69920377 | None:intergenic |
| GCTTTAGTATAATAAAATCA+AGG | 0.574080 | 4_3:-69921154 | Msa0659520:CDS |
| GGTTTGAGGAAGAACTTTGG+TGG | 0.575323 | 4_3:+69924395 | None:intergenic |
| GGGATACCTTATGGATGGAT+CGG | 0.575908 | 4_3:+69920312 | None:intergenic |
| CATTTCCGCGGGCAACGCAG+TGG | 0.577408 | 4_3:-69922666 | Msa0659520:CDS |
| AGAAGCTATGGTTATGCAAG+AGG | 0.586940 | 4_3:-69921317 | Msa0659520:CDS |
| GAGATTGTGTCCGAACCACT+AGG | 0.597033 | 4_3:-69923122 | Msa0659520:CDS |
| AGTCATTGGAGCCATTTCCG+CGG | 0.600289 | 4_3:-69922678 | Msa0659520:CDS |
| TTGGTGCAGGTTGCAACTCG+TGG | 0.603431 | 4_3:-69920442 | Msa0659520:intron |
| CTTCATAACAGTGCCCTGGT+TGG | 0.604404 | 4_3:-69924221 | Msa0659520:intron |
| ACTGCGAGGAGGATAATAGC+TGG | 0.604969 | 4_3:-69921791 | Msa0659520:CDS |
| CAAAACCACTGCGTTGCCCG+CGG | 0.605069 | 4_3:+69922661 | None:intergenic |
| TCAGTTTCTGATCTCTGATG+GGG | 0.606841 | 4_3:-69920155 | Msa0659520:intron |
| GTGTTATGCAACTCTATCTG+TGG | 0.608199 | 4_3:-69924005 | Msa0659520:CDS |
| ACTCGTGAAACTCTTGAATG+AGG | 0.610650 | 4_3:-69921516 | Msa0659520:CDS |
| TGGACAAGATATCTTCTGGA+GGG | 0.613322 | 4_3:-69921073 | Msa0659520:CDS |
| TGCACTCCTGGACCAGAAGT+GGG | 0.619653 | 4_3:-69922528 | Msa0659520:CDS |
| TGAAATTTCAGTTCACTGCG+AGG | 0.626166 | 4_3:-69921805 | Msa0659520:intron |
| TACCTAGGAGCAAGCAATGG+CGG | 0.626311 | 4_3:+69924344 | None:intergenic |
| CAAGCAATGGCGGAAGACAG+AGG | 0.629441 | 4_3:+69924354 | None:intergenic |
| CTGCAGTAAGAGTTGTTGAA+GGG | 0.630868 | 4_3:-69922568 | Msa0659520:CDS |
| GTGAAGAGATATGCAGCCAG+AGG | 0.643077 | 4_3:+69921125 | None:intergenic |
| AGACAAAGAGCTACGAATGG+CGG | 0.643657 | 4_3:-69923895 | Msa0659520:CDS |
| AAAGGCTCTGCTACCAACCA+GGG | 0.646284 | 4_3:+69924208 | None:intergenic |
| GTGGACAAGATATCTTCTGG+AGG | 0.652280 | 4_3:-69921074 | Msa0659520:CDS |
| TACTCAGGTAGTGCCAGAGT+AGG | 0.654325 | 4_3:-69921999 | Msa0659520:intron |
| ATGATCAACACAACTCCTAG+TGG | 0.658303 | 4_3:+69923107 | None:intergenic |
| GCAAGACAAAGAGCTACGAA+TGG | 0.673266 | 4_3:-69923898 | Msa0659520:CDS |
| ATGTACCTAGGAGCAAGCAA+TGG | 0.680273 | 4_3:+69924341 | None:intergenic |
| AATTTCAGTTCACTGCGAGG+AGG | 0.681260 | 4_3:-69921802 | Msa0659520:intron |
| TTGTGTTGATCATATCAACA+TGG | 0.681886 | 4_3:-69923097 | Msa0659520:CDS |
| GTTTGGGTAATGGAAAGGAG+TGG | 0.684376 | 4_3:+69924638 | None:intergenic |
| GGTCTAAATGATGATGTGCA+AGG | 0.687927 | 4_3:-69920207 | Msa0659520:exon |
| GTTGCAGGAGAAACTTCTGA+TGG | 0.692797 | 4_3:+69922635 | None:intergenic |
| TGGGATAAGATACTTTACAC+AGG | 0.716272 | 4_3:-69922509 | Msa0659520:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAAAACAAAAAATT+TGG | - | chr4_3:69920113-69920132 | Msa0659520:three_prime_UTR | 10.0% |
| !! | TTATTAATGTTAATAATTGT+TGG | - | chr4_3:69922426-69922445 | Msa0659520:intron | 10.0% |
| !! | ATAAAAAAGTTACATATATT+TGG | - | chr4_3:69922542-69922561 | Msa0659520:CDS | 10.0% |
| !!! | AAACATTTTTTTAATATACG+AGG | + | chr4_3:69920045-69920064 | None:intergenic | 15.0% |
| !!! | CTTAATTTATCCTTTTATAT+AGG | + | chr4_3:69921060-69921079 | None:intergenic | 15.0% |
| !! | CACAAAATAACAATTATAAA+TGG | + | chr4_3:69921168-69921187 | None:intergenic | 15.0% |
| !!! | CATTTATAATTGTTATTTTG+TGG | - | chr4_3:69921166-69921185 | Msa0659520:CDS | 15.0% |
| !!! | AGTTTTTATCTTTTCTTTTT+GGG | - | chr4_3:69921819-69921838 | Msa0659520:intron | 15.0% |
| !! | TAAAATCTTTATCAATGAAA+AGG | + | chr4_3:69921889-69921908 | None:intergenic | 15.0% |
| !!! | ATTTTTTTAATATACGAGGA+GGG | + | chr4_3:69920041-69920060 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTGTTTTTTGAG+AGG | + | chr4_3:69920110-69920129 | None:intergenic | 20.0% |
| !! | AAACAAAAAGTAAATGGAAA+AGG | + | chr4_3:69920302-69920321 | None:intergenic | 20.0% |
| !! | GTAAAGAAACAAAAAGTAAA+TGG | + | chr4_3:69920308-69920327 | None:intergenic | 20.0% |
| !! | AACTGTAATTTCTTCATAAT+TGG | - | chr4_3:69920354-69920373 | Msa0659520:CDS | 20.0% |
| !! | TTAATTCTATTTGCTTAAGA+AGG | - | chr4_3:69920551-69920570 | Msa0659520:intron | 20.0% |
| !!! | ACAATAATGTTCTTTTTATG+TGG | - | chr4_3:69920575-69920594 | Msa0659520:intron | 20.0% |
| !! | GAAAATAAACAAGTATTTGA+TGG | - | chr4_3:69920646-69920665 | Msa0659520:intron | 20.0% |
| !! | ATAAACAATAGAAACAAAAG+AGG | + | chr4_3:69920874-69920893 | None:intergenic | 20.0% |
| !! | TAAGATATTTACAATGCTAA+TGG | + | chr4_3:69921238-69921257 | None:intergenic | 20.0% |
| !! | TAAATTGCATTTCGTTATAA+CGG | - | chr4_3:69921588-69921607 | Msa0659520:CDS | 20.0% |
| !! | TTTGTGAAATTATATTTGAG+TGG | + | chr4_3:69921749-69921768 | None:intergenic | 20.0% |
| !!! | CAGTTTTTATCTTTTCTTTT+TGG | - | chr4_3:69921818-69921837 | Msa0659520:intron | 20.0% |
| !! | AATATAAACAACAAGTTCAA+GGG | + | chr4_3:69922754-69922773 | None:intergenic | 20.0% |
| !! | AAATATAAACAACAAGTTCA+AGG | + | chr4_3:69922755-69922774 | None:intergenic | 20.0% |
| !! | GCTTTAGTATAATAAAATCA+AGG | - | chr4_3:69923463-69923482 | Msa0659520:intron | 20.0% |
| !!! | TATATAAAACTGATTTCTTG+TGG | + | chr4_3:69924273-69924292 | None:intergenic | 20.0% |
| !! | TAAATTTATTCACAGTGATT+GGG | + | chr4_3:69924548-69924567 | None:intergenic | 20.0% |
| !! | ATTTAAGGACGAAAAGTATA+TGG | + | chr4_3:69920013-69920032 | None:intergenic | 25.0% |
| !!! | CATTTTTTTAATATACGAGG+AGG | + | chr4_3:69920042-69920061 | None:intergenic | 25.0% |
| !! | AACAAAAAATTTGGTAGTCA+AGG | - | chr4_3:69920122-69920141 | Msa0659520:three_prime_UTR | 25.0% |
| ! | TCAACTAGAAATAGCATTTA+AGG | + | chr4_3:69920170-69920189 | None:intergenic | 25.0% |
| !! | TTTTCTTGGCAACATATTTA+TGG | + | chr4_3:69920336-69920355 | None:intergenic | 25.0% |
| !! | TGAAGAAATTACAGTTTTCT+TGG | + | chr4_3:69920350-69920369 | None:intergenic | 25.0% |
| ! | TGTTGTTAAATTGTTTGCAA+AGG | + | chr4_3:69920430-69920449 | None:intergenic | 25.0% |
| ! | TTATGTGGTTTATATTGTGA+AGG | - | chr4_3:69920590-69920609 | Msa0659520:intron | 25.0% |
| ! | AATTATTGATGCTCTTCATT+CGG | - | chr4_3:69920795-69920814 | Msa0659520:intron | 25.0% |
| !! | ATTTATCCTTTTATATAGGC+TGG | + | chr4_3:69921056-69921075 | None:intergenic | 25.0% |
| ! | TCAAACTTATTGCCAATAAA+TGG | - | chr4_3:69921140-69921159 | Msa0659520:CDS | 25.0% |
| ! | CAAACTTATTGCCAATAAAT+GGG | - | chr4_3:69921141-69921160 | Msa0659520:CDS | 25.0% |
| ! | TTATAAATGGACCCATTTAT+TGG | + | chr4_3:69921155-69921174 | None:intergenic | 25.0% |
| !! | AGGTAATTAAATTGATGGTA+AGG | + | chr4_3:69921262-69921281 | None:intergenic | 25.0% |
| ! | AATGGAGGTAATTAAATTGA+TGG | + | chr4_3:69921267-69921286 | None:intergenic | 25.0% |
| ! | AAAATGTACACACATAGAAA+TGG | + | chr4_3:69921285-69921304 | None:intergenic | 25.0% |
| !! | TTCTTTGTAATTACCTTTTC+AGG | + | chr4_3:69921376-69921395 | None:intergenic | 25.0% |
| !! | TTTCTTTTTCTCCTTCTTTT+AGG | - | chr4_3:69921437-69921456 | Msa0659520:intron | 25.0% |
| ! | ATATATATACTACATGACAG+TGG | + | chr4_3:69921640-69921659 | None:intergenic | 25.0% |
| ! | TCTTTATCAATGAAAAGGAA+AGG | + | chr4_3:69921884-69921903 | None:intergenic | 25.0% |
| ! | AGATATGCAATGATTTCATA+GGG | + | chr4_3:69922168-69922187 | None:intergenic | 25.0% |
| ! | TAGATATGCAATGATTTCAT+AGG | + | chr4_3:69922169-69922188 | None:intergenic | 25.0% |
| ! | ATAAAACCTTATAGCAGAAT+TGG | + | chr4_3:69922581-69922600 | None:intergenic | 25.0% |
| !! | ATAATAGACCAATTTTACTC+AGG | - | chr4_3:69922603-69922622 | Msa0659520:CDS | 25.0% |
| ! | TATAGATGAAAATATGTTGC+TGG | + | chr4_3:69922784-69922803 | None:intergenic | 25.0% |
| !!! | AAGAATTGGAGCAATTTTTT+GGG | - | chr4_3:69923019-69923038 | Msa0659520:intron | 25.0% |
| !! | GTATCAGACAAAATTGTTTT+AGG | - | chr4_3:69923129-69923148 | Msa0659520:CDS | 25.0% |
| ! | ACAGTAATAATTGGCAAAAT+TGG | + | chr4_3:69923337-69923356 | None:intergenic | 25.0% |
| !!! | AACATTTACTTTTCCCTTTA+TGG | + | chr4_3:69923365-69923384 | None:intergenic | 25.0% |
| ! | TAATCCCTTAATTTCATCAA+AGG | - | chr4_3:69923800-69923819 | Msa0659520:intron | 25.0% |
| ! | TCTACCTTTGATGAAATTAA+GGG | + | chr4_3:69923807-69923826 | None:intergenic | 25.0% |
| ! | TTCTACCTTTGATGAAATTA+AGG | + | chr4_3:69923808-69923827 | None:intergenic | 25.0% |
| !! | TTACTACCTAAATTTTGTAC+AGG | - | chr4_3:69923868-69923887 | Msa0659520:intron | 25.0% |
| !! | TGTTTTCCTGTACAAAATTT+AGG | + | chr4_3:69923877-69923896 | None:intergenic | 25.0% |
| ! | TTCTCAAATTATCATTGATG+TGG | + | chr4_3:69923967-69923986 | None:intergenic | 25.0% |
| ! | TACAGTTATGAAACTTCATA+AGG | + | chr4_3:69924045-69924064 | None:intergenic | 25.0% |
| ! | ATGTAGTACATATCTATGTA+TGG | - | chr4_3:69924089-69924108 | Msa0659520:intron | 25.0% |
| ! | TGAGAAGGAAAAAATATTGA+GGG | - | chr4_3:69924339-69924358 | Msa0659520:intron | 25.0% |
| ! | AAAAATATTGCCACCAAAAA+TGG | + | chr4_3:69924365-69924384 | None:intergenic | 25.0% |
| !!! | TCCTACATTTGTTTTTTGTA+AGG | - | chr4_3:69924508-69924527 | Msa0659520:five_prime_UTR | 25.0% |
| ! | ACCTTACAAAAAACAAATGT+AGG | + | chr4_3:69924512-69924531 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTTTGTAAGGTTG+AGG | - | chr4_3:69924514-69924533 | Msa0659520:five_prime_UTR | 25.0% |
| ! | GTAAATTTATTCACAGTGAT+TGG | + | chr4_3:69924549-69924568 | None:intergenic | 25.0% |
| ! | GAAATAGCATTTAAGGTTGT+TGG | + | chr4_3:69920163-69920182 | None:intergenic | 30.0% |
| TCATAGTAAAACAAGGTTTG+AGG | + | chr4_3:69920239-69920258 | None:intergenic | 30.0% | |
| ! | AGGCTTTTCATAGTAAAACA+AGG | + | chr4_3:69920246-69920265 | None:intergenic | 30.0% |
| CTCTTCTAACATCTTAACTA+TGG | + | chr4_3:69920764-69920783 | None:intergenic | 30.0% | |
| GTTATATATGCTTCTAGTCT+AGG | + | chr4_3:69920832-69920851 | None:intergenic | 30.0% | |
| CGATGTGAATCTTTATATTG+CGG | + | chr4_3:69921019-69921038 | None:intergenic | 30.0% | |
| !!! | TCTTCAAGTGTCTACTTTTT+TGG | - | chr4_3:69921081-69921100 | Msa0659520:CDS | 30.0% |
| ! | AGTTTGATTTCTCTTAAGCA+AGG | + | chr4_3:69921127-69921146 | None:intergenic | 30.0% |
| TAAATGCCATCATAACAAGA+GGG | + | chr4_3:69921205-69921224 | None:intergenic | 30.0% | |
| ! | ATTTTAAATGCAGATTGTCC+AGG | - | chr4_3:69921300-69921319 | Msa0659520:CDS | 30.0% |
| ! | TTGTGTTGATCATATCAACA+TGG | - | chr4_3:69921520-69921539 | Msa0659520:CDS | 30.0% |
| AACATGTTCTACATACACAT+AGG | + | chr4_3:69921552-69921571 | None:intergenic | 30.0% | |
| TATATTCATGTCCGAAAACT+TGG | - | chr4_3:69921709-69921728 | Msa0659520:intron | 30.0% | |
| ! | GAACTATAGTTCCAAGTTTT+CGG | + | chr4_3:69921723-69921742 | None:intergenic | 30.0% |
| !! | GGGTATTGATGTGATAATAT+AGG | + | chr4_3:69922148-69922167 | None:intergenic | 30.0% |
| ATAATGTGATTGAGTTAGAG+TGG | - | chr4_3:69922214-69922233 | Msa0659520:intron | 30.0% | |
| TGGTTAATAAGCTCCAAATA+AGG | - | chr4_3:69922234-69922253 | Msa0659520:intron | 30.0% | |
| TGGTAATCGAGAATTTAAGT+AGG | + | chr4_3:69922329-69922348 | None:intergenic | 30.0% | |
| TACTTAAATTCTCGATTACC+AGG | - | chr4_3:69922328-69922347 | Msa0659520:intron | 30.0% | |
| CTTAAGAGTTAAGACTTTAG+AGG | + | chr4_3:69922461-69922480 | None:intergenic | 30.0% | |
| !! | CTCTAAAGTCTTAACTCTTA+AGG | - | chr4_3:69922459-69922478 | Msa0659520:intron | 30.0% |
| !!! | GAAGAATTGGAGCAATTTTT+TGG | - | chr4_3:69923018-69923037 | Msa0659520:intron | 30.0% |
| !!! | ATTTTTTGGGAAAGATCTGA+TGG | - | chr4_3:69923032-69923051 | Msa0659520:intron | 30.0% |
| !!! | TCAGACAAAATTGTTTTAGG+AGG | - | chr4_3:69923132-69923151 | Msa0659520:CDS | 30.0% |
| TCCATCTTGGTTATAAAGAT+TGG | - | chr4_3:69923189-69923208 | Msa0659520:intron | 30.0% | |
| TCCAATCTTTATAACCAAGA+TGG | + | chr4_3:69923193-69923212 | None:intergenic | 30.0% | |
| TTATGCAAGAGGAGATATTT+GGG | - | chr4_3:69923311-69923330 | Msa0659520:intron | 30.0% | |
| ATGGTACTCACAGTAATAAT+TGG | + | chr4_3:69923346-69923365 | None:intergenic | 30.0% | |
| TATTACTGTGAGTACCATAA+AGG | - | chr4_3:69923348-69923367 | Msa0659520:intron | 30.0% | |
| ATTACTGTGAGTACCATAAA+GGG | - | chr4_3:69923349-69923368 | Msa0659520:intron | 30.0% | |
| AAACAATGAGCAACTTAAGA+AGG | - | chr4_3:69923515-69923534 | Msa0659520:intron | 30.0% | |
| TCAAAGGTAGAAATATATGC+AGG | - | chr4_3:69923816-69923835 | Msa0659520:intron | 30.0% | |
| TACTACATTTGATGAATGAG+AGG | + | chr4_3:69924077-69924096 | None:intergenic | 30.0% | |
| TCATGTCTATATCTCACATT+TGG | + | chr4_3:69924120-69924139 | None:intergenic | 30.0% | |
| ACTTGTTTGTACAACAATGT+TGG | - | chr4_3:69924156-69924175 | Msa0659520:CDS | 30.0% | |
| TATCAAAAGAGAACTTTCCA+TGG | + | chr4_3:69924243-69924262 | None:intergenic | 30.0% | |
| !!! | CTCAATATTTTTTCCTTCTC+AGG | + | chr4_3:69924340-69924359 | None:intergenic | 30.0% |
| CTGAGAAGGAAAAAATATTG+AGG | - | chr4_3:69924338-69924357 | Msa0659520:intron | 30.0% | |
| !! | AAAATATTGAGGGCCATTTT+TGG | - | chr4_3:69924349-69924368 | Msa0659520:CDS | 30.0% |
| !! | GTATATGGTTGGTGAAGTTT+GGG | + | chr4_3:69919998-69920017 | None:intergenic | 35.0% |
| !! | AGTATATGGTTGGTGAAGTT+TGG | + | chr4_3:69919999-69920018 | None:intergenic | 35.0% |
| ! | AAGGACGAAAAGTATATGGT+TGG | + | chr4_3:69920009-69920028 | None:intergenic | 35.0% |
| AGATTATGCAACATAGTCCA+TGG | - | chr4_3:69920065-69920084 | Msa0659520:three_prime_UTR | 35.0% | |
| !! | TAAGGTTGTTGGTGATAATG+AGG | + | chr4_3:69920152-69920171 | None:intergenic | 35.0% |
| AAATGGAAAAGGATGTACCT+AGG | + | chr4_3:69920291-69920310 | None:intergenic | 35.0% | |
| GAGTTGAAATGAAGTTGCTT+GGG | + | chr4_3:69920462-69920481 | None:intergenic | 35.0% | |
| AGAGTTGAAATGAAGTTGCT+TGG | + | chr4_3:69920463-69920482 | None:intergenic | 35.0% | |
| ACAAGTATTTGATGGAGAGA+AGG | - | chr4_3:69920654-69920673 | Msa0659520:intron | 35.0% | |
| !! | CTCAGGAAGAATTTTGATAC+TGG | - | chr4_3:69920697-69920716 | Msa0659520:intron | 35.0% |
| GATGTTAGAAGAGAAAGAGA+AGG | - | chr4_3:69920771-69920790 | Msa0659520:intron | 35.0% | |
| CTTCTAGTCTAGGTTTAGAA+AGG | + | chr4_3:69920822-69920841 | None:intergenic | 35.0% | |
| ! | ACTAGAAGCATATATAACCG+AGG | - | chr4_3:69920834-69920853 | Msa0659520:intron | 35.0% |
| AGGAAATTGATTGAAGACCT+CGG | + | chr4_3:69920854-69920873 | None:intergenic | 35.0% | |
| CGGTAAAATAAGAGCAATTG+TGG | + | chr4_3:69920999-69921018 | None:intergenic | 35.0% | |
| TCAGAACCAGCCTATATAAA+AGG | - | chr4_3:69921047-69921066 | Msa0659520:CDS | 35.0% | |
| ATTTCTCTTAAGCAAGGTCT+TGG | + | chr4_3:69921121-69921140 | None:intergenic | 35.0% | |
| CTAAATGCCATCATAACAAG+AGG | + | chr4_3:69921206-69921225 | None:intergenic | 35.0% | |
| ATGTACACACATAGAAATGG+AGG | + | chr4_3:69921282-69921301 | None:intergenic | 35.0% | |
| ! | TGAAGTACTCACCTAAAAGA+AGG | + | chr4_3:69921451-69921470 | None:intergenic | 35.0% |
| AATCACAGCATTTCCATCAT+CGG | - | chr4_3:69921470-69921489 | Msa0659520:CDS | 35.0% | |
| TTATCATTGGATCCAGTCAT+TGG | - | chr4_3:69921925-69921944 | Msa0659520:CDS | 35.0% | |
| TTCTAGCAAATTTGCAAGCA+GGG | + | chr4_3:69922013-69922032 | None:intergenic | 35.0% | |
| ! | TTTCTAGCAAATTTGCAAGC+AGG | + | chr4_3:69922014-69922033 | None:intergenic | 35.0% |
| ! | AAAGTATCTTATCCCACTTC+TGG | + | chr4_3:69922104-69922123 | None:intergenic | 35.0% |
| TGGGATAAGATACTTTACAC+AGG | - | chr4_3:69922108-69922127 | Msa0659520:intron | 35.0% | |
| CAATCACATTATTATCCGCA+CGG | + | chr4_3:69922206-69922225 | None:intergenic | 35.0% | |
| TTGAACGATTCGTCCTTATT+TGG | + | chr4_3:69922250-69922269 | None:intergenic | 35.0% | |
| ATCCTAGCTGGAATAATCAT+TGG | - | chr4_3:69922286-69922305 | Msa0659520:intron | 35.0% | |
| !! | GATATTTGGTCTTAACACTC+CGG | + | chr4_3:69922371-69922390 | None:intergenic | 35.0% |
| TAGTCGCAAAGACTGATATT+TGG | + | chr4_3:69922385-69922404 | None:intergenic | 35.0% | |
| ! | AGAGTTAAGACTTTAGAGGA+GGG | + | chr4_3:69922457-69922476 | None:intergenic | 35.0% |
| ! | AAGAGTTAAGACTTTAGAGG+AGG | + | chr4_3:69922458-69922477 | None:intergenic | 35.0% |
| ACATTTGAATCAACAACAGC+TGG | + | chr4_3:69922711-69922730 | None:intergenic | 35.0% | |
| ! | TACACAGATAGCAGCTTTAA+AGG | - | chr4_3:69922996-69923015 | Msa0659520:intron | 35.0% |
| !! | AGCAGCTTTAAAGGAAGAAT+TGG | - | chr4_3:69923005-69923024 | Msa0659520:intron | 35.0% |
| GAAACTCTTGAATGAGGATA+AGG | - | chr4_3:69923107-69923126 | Msa0659520:CDS | 35.0% | |
| AAGAGGGAGAATTGATGTTA+TGG | + | chr4_3:69923236-69923255 | None:intergenic | 35.0% | |
| CAATCCTTCTGCAATAAAGA+GGG | + | chr4_3:69923252-69923271 | None:intergenic | 35.0% | |
| GATTGCTCCAACTATCTTAT+TGG | - | chr4_3:69923267-69923286 | Msa0659520:CDS | 35.0% | |
| GGAACATCCAATAAGATAGT+TGG | + | chr4_3:69923277-69923296 | None:intergenic | 35.0% | |
| GTTATGCAAGAGGAGATATT+TGG | - | chr4_3:69923310-69923329 | Msa0659520:intron | 35.0% | |
| ! | TCTTTACCTCACATTTTTGC+AGG | - | chr4_3:69923422-69923441 | Msa0659520:intron | 35.0% |
| GCAACTTAAGAAGGATTATG+TGG | - | chr4_3:69923524-69923543 | Msa0659520:intron | 35.0% | |
| TATGTGGACAAGATATCTTC+TGG | - | chr4_3:69923540-69923559 | Msa0659520:intron | 35.0% | |
| ! | CATTGACACTTGTTAGACAT+TGG | - | chr4_3:69924010-69924029 | Msa0659520:intron | 35.0% |
| GTGAGATATAGACATGATGA+TGG | - | chr4_3:69924123-69924142 | Msa0659520:intron | 35.0% | |
| TTTCCTTCTCAGGTGTATAT+GGG | + | chr4_3:69924330-69924349 | None:intergenic | 35.0% | |
| ! | TTTTCCTTCTCAGGTGTATA+TGG | + | chr4_3:69924331-69924350 | None:intergenic | 35.0% |
| CAGATAATTCTTGCATTGCT+TGG | - | chr4_3:69924385-69924404 | Msa0659520:five_prime_UTR | 35.0% | |
| TAATTCTTGCATTGCTTGGA+TGG | - | chr4_3:69924389-69924408 | Msa0659520:five_prime_UTR | 35.0% | |
| CAAAAAACAAATGTAGGAGC+AGG | + | chr4_3:69924506-69924525 | None:intergenic | 35.0% | |
| !! | GTGAAGTTTGGGTAATGGAA+AGG | + | chr4_3:69919987-69920006 | None:intergenic | 40.0% |
| !!! | ACGAGGAGGGTTTTGATTTA+AGG | + | chr4_3:69920028-69920047 | None:intergenic | 40.0% |
| CCTAACTTAAAGTGAGTCCA+TGG | + | chr4_3:69920085-69920104 | None:intergenic | 40.0% | |
| ! | CCATGGACTCACTTTAAGTT+AGG | - | chr4_3:69920082-69920101 | Msa0659520:three_prime_UTR | 40.0% |
| CAAGGTTTGAGGAAGAACTT+TGG | + | chr4_3:69920228-69920247 | None:intergenic | 40.0% | |
| GTGTTATGCAACTCTATCTG+TGG | - | chr4_3:69920612-69920631 | Msa0659520:intron | 40.0% | |
| CTTAACTATGGCCTCCAATT+GGG | + | chr4_3:69920752-69920771 | None:intergenic | 40.0% | |
| TCTTAACTATGGCCTCCAAT+TGG | + | chr4_3:69920753-69920772 | None:intergenic | 40.0% | |
| CAACATCACAACCACAATTG+CGG | - | chr4_3:69920964-69920983 | Msa0659520:intron | 40.0% | |
| ! | TCCATTCCCTCTTGTTATGA+TGG | - | chr4_3:69921196-69921215 | Msa0659520:intron | 40.0% |
| CACTTCAAGAACTGAAACAC+TGG | - | chr4_3:69921344-69921363 | Msa0659520:CDS | 40.0% | |
| ACACTGGATGAAACCTGAAA+AGG | - | chr4_3:69921360-69921379 | Msa0659520:intron | 40.0% | |
| ATGATCAACACAACTCCTAG+TGG | + | chr4_3:69921513-69921532 | None:intergenic | 40.0% | |
| CATGACAGTGGTGAATGATA+TGG | + | chr4_3:69921628-69921647 | None:intergenic | 40.0% | |
| TCTGCAGTAAGAGTTGTTGA+AGG | - | chr4_3:69922048-69922067 | Msa0659520:intron | 40.0% | |
| CTGCAGTAAGAGTTGTTGAA+GGG | - | chr4_3:69922049-69922068 | Msa0659520:intron | 40.0% | |
| AAAAGATTCGTCAAACCGTG+CGG | - | chr4_3:69922188-69922207 | Msa0659520:intron | 40.0% | |
| TTCCAGCTAGGATTCAAACT+CGG | + | chr4_3:69922279-69922298 | None:intergenic | 40.0% | |
| GACCAATGATTATTCCAGCT+AGG | + | chr4_3:69922291-69922310 | None:intergenic | 40.0% | |
| ! | GAGTTAAGACTTTAGAGGAG+GGG | + | chr4_3:69922456-69922475 | None:intergenic | 40.0% |
| AGCAGAATTGGCATGCTAAT+TGG | + | chr4_3:69922569-69922588 | None:intergenic | 40.0% | |
| AGCATGCCAATTCTGCTATA+AGG | - | chr4_3:69922572-69922591 | Msa0659520:CDS | 40.0% | |
| TGGCACTACCTGAGTAAAAT+TGG | + | chr4_3:69922614-69922633 | None:intergenic | 40.0% | |
| TGAAATTTCAGTTCACTGCG+AGG | - | chr4_3:69922812-69922831 | Msa0659520:intron | 40.0% | |
| GAGGATAATAGCTGGCAAAT+GGG | - | chr4_3:69922834-69922853 | Msa0659520:intron | 40.0% | |
| ACTCGTGAAACTCTTGAATG+AGG | - | chr4_3:69923101-69923120 | Msa0659520:CDS | 40.0% | |
| !!! | AAATTGTTTTAGGAGGCCAG+AGG | - | chr4_3:69923139-69923158 | Msa0659520:CDS | 40.0% |
| !!! | AATTGTTTTAGGAGGCCAGA+GGG | - | chr4_3:69923140-69923159 | Msa0659520:CDS | 40.0% |
| ACAATTTCTTCTCATCCCTC+TGG | + | chr4_3:69923158-69923177 | None:intergenic | 40.0% | |
| GTGAGTTTGCATTTCCATCT+TGG | - | chr4_3:69923176-69923195 | Msa0659520:intron | 40.0% | |
| TTCTCCCTCTTTATTGCAGA+AGG | - | chr4_3:69923245-69923264 | Msa0659520:intron | 40.0% | |
| GCAATCCTTCTGCAATAAAG+AGG | + | chr4_3:69923253-69923272 | None:intergenic | 40.0% | |
| TGCATAACCATAGCTTCTTG+TGG | + | chr4_3:69923298-69923317 | None:intergenic | 40.0% | |
| AGAAGCTATGGTTATGCAAG+AGG | - | chr4_3:69923300-69923319 | Msa0659520:CDS | 40.0% | |
| TGTCTACCTGCAAAAATGTG+AGG | + | chr4_3:69923431-69923450 | None:intergenic | 40.0% | |
| TGGACAAGATATCTTCTGGA+GGG | - | chr4_3:69923544-69923563 | Msa0659520:intron | 40.0% | |
| AGTGCATCAGTAGACAGAAA+AGG | - | chr4_3:69923687-69923706 | Msa0659520:intron | 40.0% | |
| TTGTACAACAATGTTGGTGC+AGG | - | chr4_3:69924162-69924181 | Msa0659520:CDS | 40.0% | |
| TTGATTCCGATCCATCCATA+AGG | - | chr4_3:69924299-69924318 | Msa0659520:intron | 40.0% | |
| TGTATATGGGGGATACCTTA+TGG | + | chr4_3:69924317-69924336 | None:intergenic | 40.0% | |
| TTCCTTCTCAGGTGTATATG+GGG | + | chr4_3:69924329-69924348 | None:intergenic | 40.0% | |
| !!! | ATATTGAGGGCCATTTTTGG+TGG | - | chr4_3:69924352-69924371 | Msa0659520:CDS | 40.0% |
| ! | GGTCTAAATGATGATGTGCA+AGG | - | chr4_3:69924410-69924429 | Msa0659520:five_prime_UTR | 40.0% |
| ATCAGAGATCAGAAACTGAG+AGG | + | chr4_3:69924461-69924480 | None:intergenic | 40.0% | |
| TCTCAGTTTCTGATCTCTGA+TGG | - | chr4_3:69924460-69924479 | Msa0659520:five_prime_UTR | 40.0% | |
| CTCAGTTTCTGATCTCTGAT+GGG | - | chr4_3:69924461-69924480 | Msa0659520:five_prime_UTR | 40.0% | |
| TCAGTTTCTGATCTCTGATG+GGG | - | chr4_3:69924462-69924481 | Msa0659520:five_prime_UTR | 40.0% | |
| ! | GATGGGGTGTGTTTTTCTAT+AGG | - | chr4_3:69924478-69924497 | Msa0659520:five_prime_UTR | 40.0% |
| !! | GTTTGGGTAATGGAAAGGAG+TGG | + | chr4_3:69919982-69920001 | None:intergenic | 45.0% |
| !! | GGTTGGTGAAGTTTGGGTAA+TGG | + | chr4_3:69919992-69920011 | None:intergenic | 45.0% |
| ! | AAGAACTTTGGTGGTCGGAT+AGG | + | chr4_3:69920216-69920235 | None:intergenic | 45.0% |
| ! | TGAGGAAGAACTTTGGTGGT+CGG | + | chr4_3:69920221-69920240 | None:intergenic | 45.0% |
| GGTTTGAGGAAGAACTTTGG+TGG | + | chr4_3:69920225-69920244 | None:intergenic | 45.0% | |
| ATGTACCTAGGAGCAAGCAA+TGG | + | chr4_3:69920279-69920298 | None:intergenic | 45.0% | |
| ! | GGGCACTGTTATGAAGAACT+AGG | + | chr4_3:69920392-69920411 | None:intergenic | 45.0% |
| AGTTCTTCATAACAGTGCCC+TGG | - | chr4_3:69920392-69920411 | Msa0659520:CDS | 45.0% | |
| ! | CTTTGCTTGTTAGAGAGCTC+AGG | - | chr4_3:69920680-69920699 | Msa0659520:intron | 45.0% |
| GCAAGACAAAGAGCTACGAA+TGG | - | chr4_3:69920719-69920738 | Msa0659520:intron | 45.0% | |
| AGACAAAGAGCTACGAATGG+CGG | - | chr4_3:69920722-69920741 | Msa0659520:intron | 45.0% | |
| TTATTGCAGTCGTCGCATTG+CGG | + | chr4_3:69920921-69920940 | None:intergenic | 45.0% | |
| AAGAGCAATTGTGGCTGATG+CGG | + | chr4_3:69920990-69921009 | None:intergenic | 45.0% | |
| GCCATCATAACAAGAGGGAA+TGG | + | chr4_3:69921200-69921219 | None:intergenic | 45.0% | |
| CATCACATGAAGATTTCGCC+TGG | + | chr4_3:69921321-69921340 | None:intergenic | 45.0% | |
| CAACACAACTCCTAGTGGTT+CGG | + | chr4_3:69921508-69921527 | None:intergenic | 45.0% | |
| CCAATGATAACACTGCAGGT+AGG | + | chr4_3:69921915-69921934 | None:intergenic | 45.0% | |
| CCTACCTGCAGTGTTATCAT+TGG | - | chr4_3:69921912-69921931 | Msa0659520:CDS | 45.0% | |
| GGATCCAATGATAACACTGC+AGG | + | chr4_3:69921919-69921938 | None:intergenic | 45.0% | |
| GTTGCAGGAGAAACTTCTGA+TGG | + | chr4_3:69921985-69922004 | None:intergenic | 45.0% | |
| ATCCGAGTTTGAATCCTAGC+TGG | - | chr4_3:69922274-69922293 | Msa0659520:intron | 45.0% | |
| ATTACCAGGACCCATTCTCT+TGG | - | chr4_3:69922342-69922361 | Msa0659520:intron | 45.0% | |
| TTACCAGGACCCATTCTCTT+GGG | - | chr4_3:69922343-69922362 | Msa0659520:intron | 45.0% | |
| CATAACAATGCGACCTACTC+TGG | + | chr4_3:69922634-69922653 | None:intergenic | 45.0% | |
| CAGAGTAGGTCGCATTGTTA+TGG | - | chr4_3:69922632-69922651 | Msa0659520:CDS | 45.0% | |
| ACTCCAGTGATTCTTGAGCT+TGG | - | chr4_3:69922675-69922694 | Msa0659520:CDS | 45.0% | |
| AATTTCAGTTCACTGCGAGG+AGG | - | chr4_3:69922815-69922834 | Msa0659520:intron | 45.0% | |
| GGAGGATAATAGCTGGCAAA+TGG | - | chr4_3:69922833-69922852 | Msa0659520:intron | 45.0% | |
| AGAGCCAATCTTACAAGCGT+TGG | + | chr4_3:69922922-69922941 | None:intergenic | 45.0% | |
| ACGAGTCGTGCATATTGAGT+TGG | + | chr4_3:69923087-69923106 | None:intergenic | 45.0% | |
| GGATGTTCCACAAGAAGCTA+TGG | - | chr4_3:69923288-69923307 | Msa0659520:CDS | 45.0% | |
| AAAATCAAGGCCAAAGCCTC+TGG | - | chr4_3:69923476-69923495 | Msa0659520:intron | 45.0% | |
| GTGGACAAGATATCTTCTGG+AGG | - | chr4_3:69923543-69923562 | Msa0659520:intron | 45.0% | |
| !! | GTCGAGTGTCGATGTTTCAT+AGG | + | chr4_3:69923923-69923942 | None:intergenic | 45.0% |
| CTTTCTCCAACTCCTCCAAA+AGG | + | chr4_3:69924205-69924224 | None:intergenic | 45.0% | |
| TTTGGAGGAGTTGGAGAAAG+TGG | - | chr4_3:69924205-69924224 | Msa0659520:CDS | 45.0% | |
| AGGAGTTGGAGAAAGTGGAA+TGG | - | chr4_3:69924210-69924229 | Msa0659520:CDS | 45.0% | |
| GGAGTTGGAGAAAGTGGAAT+GGG | - | chr4_3:69924211-69924230 | Msa0659520:CDS | 45.0% | |
| GGGATACCTTATGGATGGAT+CGG | + | chr4_3:69924308-69924327 | None:intergenic | 45.0% | |
| TATGGGGGATACCTTATGGA+TGG | + | chr4_3:69924313-69924332 | None:intergenic | 45.0% | |
| TCCTTCTCAGGTGTATATGG+GGG | + | chr4_3:69924328-69924347 | None:intergenic | 45.0% | |
| ATTCACAGTGATTGGGACTC+TGG | + | chr4_3:69924541-69924560 | None:intergenic | 45.0% | |
| TACCTAGGAGCAAGCAATGG+CGG | + | chr4_3:69920276-69920295 | None:intergenic | 50.0% | |
| CTTCATAACAGTGCCCTGGT+TGG | - | chr4_3:69920396-69920415 | Msa0659520:CDS | 50.0% | |
| AAAGGCTCTGCTACCAACCA+GGG | + | chr4_3:69920412-69920431 | None:intergenic | 50.0% | |
| !! | CGAATGGCGGATTTCCCAAT+TGG | - | chr4_3:69920735-69920754 | Msa0659520:intron | 50.0% |
| !! | ATGGCGGATTTCCCAATTGG+AGG | - | chr4_3:69920738-69920757 | Msa0659520:intron | 50.0% |
| GACACAATCTCTGCCGATGA+TGG | + | chr4_3:69921486-69921505 | None:intergenic | 50.0% | |
| GAGATTGTGTCCGAACCACT+AGG | - | chr4_3:69921495-69921514 | Msa0659520:CDS | 50.0% | |
| AGTCATTGGAGCCATTTCCG+CGG | - | chr4_3:69921939-69921958 | Msa0659520:CDS | 50.0% | |
| TCCTGAAACAACTGCACTCC+TGG | - | chr4_3:69922077-69922096 | Msa0659520:intron | 50.0% | |
| ! | TCCAGGAGTGCAGTTGTTTC+AGG | + | chr4_3:69922081-69922100 | None:intergenic | 50.0% |
| TCTTATCCCACTTCTGGTCC+AGG | + | chr4_3:69922098-69922117 | None:intergenic | 50.0% | |
| ACTCCGGTTCCCAAGAGAAT+GGG | + | chr4_3:69922355-69922374 | None:intergenic | 50.0% | |
| TACTCAGGTAGTGCCAGAGT+AGG | - | chr4_3:69922618-69922637 | Msa0659520:CDS | 50.0% | |
| CCTCCAAGCTCAAGAATCAC+TGG | + | chr4_3:69922681-69922700 | None:intergenic | 50.0% | |
| CCAGTGATTCTTGAGCTTGG+AGG | - | chr4_3:69922678-69922697 | Msa0659520:CDS | 50.0% | |
| ACTGCGAGGAGGATAATAGC+TGG | - | chr4_3:69922826-69922845 | Msa0659520:intron | 50.0% | |
| GGCAAATGGGCATGCAATAG+TGG | - | chr4_3:69922847-69922866 | Msa0659520:intron | 50.0% | |
| CGCTCCAACGCTTGTAAGAT+TGG | - | chr4_3:69922915-69922934 | Msa0659520:intron | 50.0% | |
| AGATATGCAGCCAGAGGCTT+TGG | + | chr4_3:69923489-69923508 | None:intergenic | 50.0% | |
| GTGAAGAGATATGCAGCCAG+AGG | + | chr4_3:69923495-69923514 | None:intergenic | 50.0% | |
| !! | GCAACTCGTGGTTTGCCTTT+TGG | - | chr4_3:69924187-69924206 | Msa0659520:CDS | 50.0% |
| !! | ACTCGTGGTTTGCCTTTTGG+AGG | - | chr4_3:69924190-69924209 | Msa0659520:CDS | 50.0% |
| !! | GGTTTGCCTTTTGGAGGAGT+TGG | - | chr4_3:69924196-69924215 | Msa0659520:CDS | 50.0% |
| !! | AGTGGAATGGGTTGCTACCA+TGG | - | chr4_3:69924223-69924242 | Msa0659520:intron | 50.0% |
| TCCCCCATATACACCTGAGA+AGG | - | chr4_3:69924324-69924343 | Msa0659520:intron | 50.0% | |
| ! | CAAGCAATGGCGGAAGACAG+AGG | + | chr4_3:69920266-69920285 | None:intergenic | 55.0% |
| TTCCGCCATTGCTTGCTCCT+AGG | - | chr4_3:69920271-69920290 | Msa0659520:CDS | 55.0% | |
| CAAAGGCTCTGCTACCAACC+AGG | + | chr4_3:69920413-69920432 | None:intergenic | 55.0% | |
| GCGGAAATGGCTCCAATGAC+TGG | + | chr4_3:69921940-69921959 | None:intergenic | 55.0% | |
| GTCATTGGAGCCATTTCCGC+GGG | - | chr4_3:69921940-69921959 | Msa0659520:CDS | 55.0% | |
| GCAAGCAGGGATGATGTTGC+AGG | + | chr4_3:69922000-69922019 | None:intergenic | 55.0% | |
| TGCACTCCTGGACCAGAAGT+GGG | - | chr4_3:69922089-69922108 | Msa0659520:intron | 55.0% | |
| GTTCCCAAGAGAATGGGTCC+TGG | + | chr4_3:69922349-69922368 | None:intergenic | 55.0% | |
| GGACCCATTCTCTTGGGAAC+CGG | - | chr4_3:69922349-69922368 | Msa0659520:intron | 55.0% | |
| CACTCCGGTTCCCAAGAGAA+TGG | + | chr4_3:69922356-69922375 | None:intergenic | 55.0% | |
| TTGGTGCAGGTTGCAACTCG+TGG | - | chr4_3:69924175-69924194 | Msa0659520:CDS | 55.0% | |
| CAAAACCACTGCGTTGCCCG+CGG | + | chr4_3:69921959-69921978 | None:intergenic | 60.0% | |
| CTGCACTCCTGGACCAGAAG+TGG | - | chr4_3:69922088-69922107 | Msa0659520:intron | 60.0% | |
| GGCTGATGCGGCCGCAATTG+TGG | + | chr4_3:69920978-69920997 | None:intergenic | 65.0% | |
| CACTGCGTTGCCCGCGGAAA+TGG | + | chr4_3:69921953-69921972 | None:intergenic | 65.0% | |
| CATTTCCGCGGGCAACGCAG+TGG | - | chr4_3:69921951-69921970 | Msa0659520:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 69919967 | 69924672 | 69919967 | ID=Msa0659520;Name=Msa0659520 |
| chr4_3 | mRNA | 69919967 | 69924672 | 69919967 | ID=Msa0659520-mRNA-1;Parent=Msa0659520;Name=Msa0659520-mRNA-1;_AED=0.15;_eAED=0.15;_QI=288|0.91|0.92|1|0.75|0.69|13|231|512 |
| chr4_3 | exon | 69919967 | 69920173 | 69919967 | ID=Msa0659520-mRNA-1:exon:20663;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69920195 | 69920455 | 69920195 | ID=Msa0659520-mRNA-1:exon:20662;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69921046 | 69921195 | 69921046 | ID=Msa0659520-mRNA-1:exon:20661;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69921285 | 69921375 | 69921285 | ID=Msa0659520-mRNA-1:exon:20660;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69921464 | 69921636 | 69921464 | ID=Msa0659520-mRNA-1:exon:20659;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69921712 | 69921816 | 69921712 | ID=Msa0659520-mRNA-1:exon:20658;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69921899 | 69922014 | 69921899 | ID=Msa0659520-mRNA-1:exon:20657;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69922510 | 69922716 | 69922510 | ID=Msa0659520-mRNA-1:exon:20656;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69923084 | 69923180 | 69923084 | ID=Msa0659520-mRNA-1:exon:20655;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69923258 | 69923326 | 69923258 | ID=Msa0659520-mRNA-1:exon:20654;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69923874 | 69924027 | 69923874 | ID=Msa0659520-mRNA-1:exon:20653;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69924131 | 69924232 | 69924131 | ID=Msa0659520-mRNA-1:exon:20652;Parent=Msa0659520-mRNA-1 |
| chr4_3 | exon | 69924347 | 69924672 | 69924347 | ID=Msa0659520-mRNA-1:exon:20651;Parent=Msa0659520-mRNA-1 |
| chr4_3 | five_prime_UTR | 69924385 | 69924672 | 69924385 | ID=Msa0659520-mRNA-1:five_prime_utr;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69924347 | 69924384 | 69924347 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69924131 | 69924232 | 69924131 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69923874 | 69924027 | 69923874 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69923258 | 69923326 | 69923258 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69923084 | 69923180 | 69923084 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69922510 | 69922716 | 69922510 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69921899 | 69922014 | 69921899 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69921712 | 69921816 | 69921712 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69921464 | 69921636 | 69921464 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69921285 | 69921375 | 69921285 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69921046 | 69921195 | 69921046 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | CDS | 69920219 | 69920455 | 69920219 | ID=Msa0659520-mRNA-1:cds;Parent=Msa0659520-mRNA-1 |
| chr4_3 | three_prime_UTR | 69920195 | 69920218 | 69920195 | ID=Msa0659520-mRNA-1:three_prime_utr;Parent=Msa0659520-mRNA-1 |
| chr4_3 | three_prime_UTR | 69919967 | 69920173 | 69919967 | ID=Msa0659520-mRNA-1:three_prime_utr;Parent=Msa0659520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
