AlfalfaGEDB | Msa0546080

M. sativa cultivar zhongmu-4 / Msa0546080

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546080	XP_003606265.1	95.918	196	8	0	1	196	1	196	5.70e-137	391

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546080	sp\|Q56XJ7\|Y4276_ARATH	38.462	91	54	1	68	158	119	207	8.59e-12	65.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546080	G7JL02	95.918	196	8	0	1	196	1	196	2.72e-137	391

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004340	Msa0546080	0.806281	8.877122e-50	-8.615850e-47
Msa0006050	Msa0546080	0.807697	4.453397e-50	-8.615850e-47
Msa0012380	Msa0546080	0.856856	2.423347e-62	-8.615850e-47
Msa0014410	Msa0546080	0.827152	1.832287e-54	-8.615850e-47
Msa0020320	Msa0546080	0.819764	9.785627e-53	-8.615850e-47
Msa0043940	Msa0546080	0.801542	8.570841e-49	-8.615850e-47
Msa0044180	Msa0546080	0.804484	2.112482e-49	-8.615850e-47
Msa0054760	Msa0546080	0.817599	3.032822e-52	-8.615850e-47
Msa0064550	Msa0546080	0.870300	1.619450e-66	-8.615850e-47
Msa0072830	Msa0546080	0.829791	4.225044e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546080	MtrunA17_Chr4g0027171	95.918	196	8	0	1	196	1	196	5.24e-141	391
Msa0546080	MtrunA17_Chr2g0320881	54.286	175	68	5	15	182	8	177	6.04e-57	178
Msa0546080	MtrunA17_Chr4g0056791	43.077	130	58	2	69	196	57	172	2.36e-28	104
Msa0546080	MtrunA17_Chr5g0398651	51.724	87	42	0	69	155	26	112	5.75e-25	94.0
Msa0546080	MtrunA17_Chr5g0398661	40.741	81	48	0	72	152	117	197	8.05e-15	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546080	AT2G27830.1	47.959	196	94	4	1	194	1	190	4.50e-50	160
Msa0546080	AT4G22758.1	38.462	91	54	1	68	158	119	207	8.73e-13	65.5
Msa0546080	AT1G70780.1	30.328	122	79	3	71	188	16	135	8.09e-12	60.8

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Find 61 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACCGGAACAGCCATG+TGG	0.703928	4_1:+37274002	Msa0546080:CDS
AAGCAAGAAGCTTCCTTCGA+CGG	0.546345	4_1:-37274336	None:intergenic
AAGCTTGAAGAAAGTGACAA+TGG	0.627431	4_1:+37274809	Msa0546080:CDS
AATGAGAAGCTTAAGGAAAT+CGG	0.435447	4_1:+37274758	Msa0546080:CDS
ACAAGGTCCGGCATAGTCTT+TGG	0.414724	4_1:-37274114	None:intergenic
ACAGCCATGTGGAAACTCAC+AGG	0.594791	4_1:+37274013	Msa0546080:CDS
ACCTTAATGAGTAACTTCGT+CGG	0.631958	4_1:-37274195	None:intergenic
ACTCATTAAGGTTACGATGA+TGG	0.455220	4_1:+37274206	Msa0546080:CDS
AGATAGAAATGAGAAGCTTA+AGG	0.392238	4_1:+37274751	Msa0546080:CDS
AGCTTAAGGAAATCGGATCA+AGG	0.548071	4_1:+37274765	Msa0546080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTATAGTGAGGAAAATCAA+GGG	-	chr4_1:37273941-37273960	None:intergenic	30.0%
ATCTATAGTGAGGAAAATCA+AGG	-	chr4_1:37273942-37273961	None:intergenic	30.0%
GTAAGGTTGTATGTTAAAGA+AGG	+	chr4_1:37274297-37274316	Msa0546080:CDS	30.0%
TATGACGTATCTAATTTCTC+TGG	+	chr4_1:37274471-37274490	Msa0546080:intron	30.0%
AGATAGAAATGAGAAGCTTA+AGG	+	chr4_1:37274751-37274770	Msa0546080:CDS	30.0%
AATGAGAAGCTTAAGGAAAT+CGG	+	chr4_1:37274758-37274777	Msa0546080:CDS	30.0%
GAAATACTAGTAACTGTTGT+TGG	-	chr4_1:37274982-37275001	None:intergenic	30.0%
TCTATAGTGAGGAAAATCAA+GGG	-	chr4_1:37273941-37273960	None:intergenic	30.0%
ATCTATAGTGAGGAAAATCA+AGG	-	chr4_1:37273942-37273961	None:intergenic	30.0%
GTAAGGTTGTATGTTAAAGA+AGG	+	chr4_1:37274297-37274316	Msa0546080:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	37273837	37275145	37273837	ID=Msa0546080;Name=Msa0546080
chr4_1	mRNA	37273837	37275145	37273837	ID=Msa0546080-mRNA-1;Parent=Msa0546080;Name=Msa0546080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=151\|1\|1\|1\|1\|1\|2\|211\|196
chr4_1	exon	37273837	37274390	37273837	ID=Msa0546080-mRNA-1:exon:9468;Parent=Msa0546080-mRNA-1
chr4_1	exon	37274747	37275145	37274747	ID=Msa0546080-mRNA-1:exon:9469;Parent=Msa0546080-mRNA-1
chr4_1	five_prime_UTR	37273837	37273987	37273837	ID=Msa0546080-mRNA-1:five_prime_utr;Parent=Msa0546080-mRNA-1
chr4_1	CDS	37273988	37274390	37273988	ID=Msa0546080-mRNA-1:cds;Parent=Msa0546080-mRNA-1
chr4_1	CDS	37274747	37274934	37274747	ID=Msa0546080-mRNA-1:cds;Parent=Msa0546080-mRNA-1
chr4_1	three_prime_UTR	37274935	37275145	37274935	ID=Msa0546080-mRNA-1:three_prime_utr;Parent=Msa0546080-mRNA-1

Gene Sequence

>Msa0546080

ATGTCAAACGTCAAAAACCACCGGAACAGCCATGTGGAAACTCACAGGCGAGGAAGATTAACAGAGAAATCATCATCTTTTCATGGTCACACTTCTGCAACACTGTCCAGTGCAAAACTCCGGCGGCCAAAGACTATGCCGGACCTTGTCCAGGACAGGAAGCGTGCGGCAATGACTTCTTCGCCACCGGAGTTTTTTCCCAGACAGCCGACGAAGTTACTCATTAAGGTTACGATGATGGGCAGCCTTGGTCCCGTGCAAGTGTTAATGACGATGGAGTCGACGGTTGGAGATTTGATAGCGGAGGCTGTAAGGTTGTATGTTAAAGAAGGTCGCCGTCCAATCTTGCCGTCGAAGGAAGCTTCTTGCTTTGATCTTCATTACTCTCAGTTCAGCTTAGAAAGTTTAGATAGAAATGAGAAGCTTAAGGAAATCGGATCAAGGAACTTTTTTATGTGTCCAAAGAAGCTTGAAGAAAGTGACAATGGTGGAGACCATAACGTAACGGCGTCGTTTAGTTCATGTTCCAGACAAGTTGAAAAAGTGAGCAAAGGTTTTGGTCTTTTAAGGTGTATAGATTTCTTGATATGA

Protein sequence

>Msa0546080

MSNVKNHRNSHVETHRRGRLTEKSSSFHGHTSATLSSAKLRRPKTMPDLVQDRKRAAMTSSPPEFFPRQPTKLLIKVTMMGSLGPVQVLMTMESTVGDLIAEAVRLYVKEGRRPILPSKEASCFDLHYSQFSLESLDRNEKLKEIGSRNFFMCPKKLEESDNGGDHNVTASFSSCSRQVEKVSKGFGLLRCIDFLI*