Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546080 | XP_003606265.1 | 95.918 | 196 | 8 | 0 | 1 | 196 | 1 | 196 | 5.70e-137 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546080 | sp|Q56XJ7|Y4276_ARATH | 38.462 | 91 | 54 | 1 | 68 | 158 | 119 | 207 | 8.59e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546080 | G7JL02 | 95.918 | 196 | 8 | 0 | 1 | 196 | 1 | 196 | 2.72e-137 | 391 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa0546080 | 0.806281 | 8.877122e-50 | -8.615850e-47 |
| Msa0006050 | Msa0546080 | 0.807697 | 4.453397e-50 | -8.615850e-47 |
| Msa0012380 | Msa0546080 | 0.856856 | 2.423347e-62 | -8.615850e-47 |
| Msa0014410 | Msa0546080 | 0.827152 | 1.832287e-54 | -8.615850e-47 |
| Msa0020320 | Msa0546080 | 0.819764 | 9.785627e-53 | -8.615850e-47 |
| Msa0043940 | Msa0546080 | 0.801542 | 8.570841e-49 | -8.615850e-47 |
| Msa0044180 | Msa0546080 | 0.804484 | 2.112482e-49 | -8.615850e-47 |
| Msa0054760 | Msa0546080 | 0.817599 | 3.032822e-52 | -8.615850e-47 |
| Msa0064550 | Msa0546080 | 0.870300 | 1.619450e-66 | -8.615850e-47 |
| Msa0072830 | Msa0546080 | 0.829791 | 4.225044e-55 | -8.615850e-47 |
| Msa0072860 | Msa0546080 | 0.827672 | 1.374710e-54 | -8.615850e-47 |
| Msa0108070 | Msa0546080 | 0.822300 | 2.550563e-53 | -8.615850e-47 |
| Msa0109490 | Msa0546080 | 0.838918 | 2.161662e-57 | -8.615850e-47 |
| Msa0140290 | Msa0546080 | 0.812021 | 5.226752e-51 | -8.615850e-47 |
| Msa0154200 | Msa0546080 | 0.804751 | 1.858678e-49 | -8.615850e-47 |
| Msa0154220 | Msa0546080 | 0.847921 | 8.513472e-60 | -8.615850e-47 |
| Msa0154240 | Msa0546080 | 0.876919 | 9.516171e-69 | -8.615850e-47 |
| Msa0154270 | Msa0546080 | 0.867415 | 1.391842e-65 | -8.615850e-47 |
| Msa0155610 | Msa0546080 | 0.837815 | 4.160216e-57 | -8.615850e-47 |
| Msa0171920 | Msa0546080 | 0.805456 | 1.323415e-49 | -8.615850e-47 |
| Msa0178940 | Msa0546080 | 0.801043 | 1.084737e-48 | -8.615850e-47 |
| Msa0187980 | Msa0546080 | 0.827165 | 1.819191e-54 | -8.615850e-47 |
| Msa0197030 | Msa0546080 | 0.832986 | 6.910006e-56 | -8.615850e-47 |
| Msa0199740 | Msa0546080 | 0.809734 | 1.634477e-50 | -8.615850e-47 |
| Msa0212730 | Msa0546080 | 0.806296 | 8.813993e-50 | -8.615850e-47 |
| Msa0216210 | Msa0546080 | 0.848477 | 5.978712e-60 | -8.615850e-47 |
| Msa0216220 | Msa0546080 | 0.824275 | 8.815290e-54 | -8.615850e-47 |
| Msa0224370 | Msa0546080 | 0.821976 | 3.031906e-53 | -8.615850e-47 |
| Msa0224400 | Msa0546080 | 0.834489 | 2.910000e-56 | -8.615850e-47 |
| Msa0380650 | Msa0546080 | 0.807498 | 4.907911e-50 | -8.615850e-47 |
| Msa0382590 | Msa0546080 | 0.821440 | 4.033020e-53 | -8.615850e-47 |
| Msa0387970 | Msa0546080 | 0.854002 | 1.644331e-61 | -8.615850e-47 |
| Msa0389060 | Msa0546080 | 0.828969 | 6.690624e-55 | -8.615850e-47 |
| Msa0392050 | Msa0546080 | 0.871314 | 7.509864e-67 | -8.615850e-47 |
| Msa0392540 | Msa0546080 | 0.813919 | 2.005755e-51 | -8.615850e-47 |
| Msa0401340 | Msa0546080 | 0.861703 | 8.512291e-64 | -8.615850e-47 |
| Msa0404060 | Msa0546080 | 0.800002 | 1.767888e-48 | -8.615850e-47 |
| Msa0404690 | Msa0546080 | 0.800345 | 1.505674e-48 | -8.615850e-47 |
| Msa0416540 | Msa0546080 | 0.820093 | 8.229609e-53 | -8.615850e-47 |
| Msa0430290 | Msa0546080 | 0.806883 | 6.624115e-50 | -8.615850e-47 |
| Msa0432720 | Msa0546080 | 0.830847 | 2.331608e-55 | -8.615850e-47 |
| Msa0440310 | Msa0546080 | 0.813526 | 2.447900e-51 | -8.615850e-47 |
| Msa0448120 | Msa0546080 | 0.846724 | 1.814294e-59 | -8.615850e-47 |
| Msa0469950 | Msa0546080 | 0.869748 | 2.453634e-66 | -8.615850e-47 |
| Msa0238860 | Msa0546080 | 0.835272 | 1.848020e-56 | -8.615850e-47 |
| Msa0242290 | Msa0546080 | 0.804190 | 2.433125e-49 | -8.615850e-47 |
| Msa0253160 | Msa0546080 | 0.818722 | 1.690196e-52 | -8.615850e-47 |
| Msa0260180 | Msa0546080 | 0.802245 | 6.147062e-49 | -8.615850e-47 |
| Msa0260190 | Msa0546080 | 0.868581 | 5.871067e-66 | -8.615850e-47 |
| Msa0265580 | Msa0546080 | 0.809999 | 1.433523e-50 | -8.615850e-47 |
| Msa0276590 | Msa0546080 | 0.804282 | 2.328499e-49 | -8.615850e-47 |
| Msa0291940 | Msa0546080 | 0.815156 | 1.067848e-51 | -8.615850e-47 |
| Msa0295570 | Msa0546080 | 0.841893 | 3.604382e-58 | -8.615850e-47 |
| Msa0303440 | Msa0546080 | 0.825834 | 3.776942e-54 | -8.615850e-47 |
| Msa0303500 | Msa0546080 | 0.839099 | 1.939890e-57 | -8.615850e-47 |
| Msa0316610 | Msa0546080 | 0.804899 | 1.731102e-49 | -8.615850e-47 |
| Msa0343370 | Msa0546080 | 0.800788 | 1.222910e-48 | -8.615850e-47 |
| Msa0344680 | Msa0546080 | 0.869316 | 3.391939e-66 | -8.615850e-47 |
| Msa0354390 | Msa0546080 | 0.851697 | 7.494381e-61 | -8.615850e-47 |
| Msa0358290 | Msa0546080 | 0.801823 | 7.506810e-49 | -8.615850e-47 |
| Msa0525270 | Msa0546080 | 0.858700 | 6.879938e-63 | -8.615850e-47 |
| Msa0525280 | Msa0546080 | 0.863084 | 3.203842e-64 | -8.615850e-47 |
| Msa0530340 | Msa0546080 | 0.849087 | 4.050461e-60 | -8.615850e-47 |
| Msa0545230 | Msa0546080 | 0.833487 | 5.185550e-56 | -8.615850e-47 |
| Msa0546080 | Msa0548210 | 0.846784 | 1.747216e-59 | -8.615850e-47 |
| Msa0546080 | Msa0549540 | 0.876321 | 1.532074e-68 | -8.615850e-47 |
| Msa0546080 | Msa0549760 | 0.818751 | 1.664137e-52 | -8.615850e-47 |
| Msa0546080 | Msa0556070 | 0.855048 | 8.194419e-62 | -8.615850e-47 |
| Msa0546080 | Msa0568600 | 0.828210 | 1.020232e-54 | -8.615850e-47 |
| Msa0546080 | Msa0568610 | 0.854038 | 1.605475e-61 | -8.615850e-47 |
| Msa0546080 | Msa0570680 | 0.809427 | 1.902183e-50 | -8.615850e-47 |
| Msa0546080 | Msa0584280 | 0.912933 | 1.102442e-83 | -8.615850e-47 |
| Msa0546080 | Msa0587250 | 0.813741 | 2.195893e-51 | -8.615850e-47 |
| Msa0546080 | Msa0600820 | 0.825738 | 3.978987e-54 | -8.615850e-47 |
| Msa0546080 | Msa0604880 | 0.863429 | 2.505150e-64 | -8.615850e-47 |
| Msa0546080 | Msa0605250 | 0.858272 | 9.231750e-63 | -8.615850e-47 |
| Msa0546080 | Msa0609790 | 0.828796 | 7.366826e-55 | -8.615850e-47 |
| Msa0546080 | Msa0610360 | 0.801141 | 1.035709e-48 | -8.615850e-47 |
| Msa0546080 | Msa0610810 | 0.804850 | 1.772241e-49 | -8.615850e-47 |
| Msa0546080 | Msa0618520 | 0.859885 | 3.033705e-63 | -8.615850e-47 |
| Msa0546080 | Msa0622250 | 0.834640 | 2.666726e-56 | -8.615850e-47 |
| Msa0546080 | Msa0624040 | 0.843593 | 1.273911e-58 | -8.615850e-47 |
| Msa0546080 | Msa0627050 | 0.862551 | 4.677381e-64 | -8.615850e-47 |
| Msa0546080 | Msa0636720 | 0.824271 | 8.833523e-54 | -8.615850e-47 |
| Msa0546080 | Msa0644630 | 0.836712 | 7.967453e-57 | -8.615850e-47 |
| Msa0546080 | Msa0646190 | 0.896130 | 4.953233e-76 | -8.615850e-47 |
| Msa0546080 | Msa0646340 | 0.840034 | 1.108582e-57 | -8.615850e-47 |
| Msa0546080 | Msa0649310 | 0.839132 | 1.901995e-57 | -8.615850e-47 |
| Msa0546080 | Msa0650890 | 0.803615 | 3.203266e-49 | -8.615850e-47 |
| Msa0546080 | Msa0651310 | 0.823128 | 1.636383e-53 | -8.615850e-47 |
| Msa0546080 | Msa0659520 | 0.818818 | 1.607345e-52 | -8.615850e-47 |
| Msa0546080 | Msa0675010 | 0.853174 | 2.844578e-61 | -8.615850e-47 |
| Msa0546080 | Msa0676100 | 0.834458 | 2.963164e-56 | -8.615850e-47 |
| Msa0546080 | Msa0679780 | 0.834141 | 3.558038e-56 | -8.615850e-47 |
| Msa0546080 | Msa0681210 | 0.950404 | 1.766340e-108 | -8.615850e-47 |
| Msa0546080 | Msa0685890 | 0.838257 | 3.200965e-57 | -8.615850e-47 |
| Msa0546080 | Msa0693400 | 0.871451 | 6.768494e-67 | -8.615850e-47 |
| Msa0546080 | Msa0693500 | 0.820917 | 5.323649e-53 | -8.615850e-47 |
| Msa0546080 | Msa0705810 | 0.828704 | 7.755091e-55 | -8.615850e-47 |
| Msa0546080 | Msa0718920 | 0.800968 | 1.123822e-48 | -8.615850e-47 |
| Msa0546080 | Msa0732200 | 0.809717 | 1.648599e-50 | -8.615850e-47 |
| Msa0546080 | Msa0742090 | 0.822237 | 2.637329e-53 | -8.615850e-47 |
| Msa0546080 | Msa0748330 | 0.831288 | 1.817423e-55 | -8.615850e-47 |
| Msa0546080 | Msa0769830 | 0.804722 | 1.884337e-49 | -8.615850e-47 |
| Msa0546080 | Msa0775580 | 0.830795 | 2.401264e-55 | -8.615850e-47 |
| Msa0546080 | Msa0786100 | 0.844506 | 7.248626e-59 | -8.615850e-47 |
| Msa0546080 | Msa0790640 | 0.850053 | 2.177237e-60 | -8.615850e-47 |
| Msa0546080 | Msa0793100 | 0.826753 | 2.282092e-54 | -8.615850e-47 |
| Msa0546080 | Msa0806720 | 0.839987 | 1.140112e-57 | -8.615850e-47 |
| Msa0546080 | Msa0806760 | 0.831670 | 1.463429e-55 | -8.615850e-47 |
| Msa0546080 | Msa0812970 | 0.855057 | 8.145605e-62 | -8.615850e-47 |
| Msa0546080 | Msa0813030 | 0.851334 | 9.497304e-61 | -8.615850e-47 |
| Msa0546080 | Msa0819370 | 0.800461 | 1.425630e-48 | -8.615850e-47 |
| Msa0546080 | Msa0823310 | 0.807178 | 5.738564e-50 | -8.615850e-47 |
| Msa0546080 | Msa0848760 | 0.811816 | 5.792485e-51 | -8.615850e-47 |
| Msa0546080 | Msa0853480 | 0.837272 | 5.731665e-57 | -8.615850e-47 |
| Msa0546080 | Msa0853500 | 0.861737 | 8.311260e-64 | -8.615850e-47 |
| Msa0546080 | Msa0879650 | 0.822158 | 2.750547e-53 | -8.615850e-47 |
| Msa0546080 | Msa0882700 | 0.804142 | 2.489097e-49 | -8.615850e-47 |
| Msa0546080 | Msa0899730 | 0.808035 | 3.774515e-50 | -8.615850e-47 |
| Msa0546080 | Msa0911910 | 0.805744 | 1.151338e-49 | -8.615850e-47 |
| Msa0546080 | Msa0944690 | 0.838834 | 2.271932e-57 | -8.615850e-47 |
| Msa0546080 | Msa0945960 | 0.827560 | 1.462420e-54 | -8.615850e-47 |
| Msa0546080 | Msa0964650 | 0.801575 | 8.440085e-49 | -8.615850e-47 |
| Msa0546080 | Msa0964680 | 0.806625 | 7.509957e-50 | -8.615850e-47 |
| Msa0546080 | Msa0968780 | 0.832739 | 7.959148e-56 | -8.615850e-47 |
| Msa0546080 | Msa0973890 | 0.810418 | 1.164337e-50 | -8.615850e-47 |
| Msa0546080 | Msa0984000 | 0.883891 | 3.055331e-71 | -8.615850e-47 |
| Msa0546080 | Msa1014350 | 0.819345 | 1.219729e-52 | -8.615850e-47 |
| Msa0546080 | Msa1034930 | 0.808307 | 3.303553e-50 | -8.615850e-47 |
| Msa0546080 | Msa1036250 | 0.834316 | 3.215276e-56 | -8.615850e-47 |
| Msa0546080 | Msa1055360 | 0.839951 | 1.165173e-57 | -8.615850e-47 |
| Msa0546080 | Msa1063920 | 0.813441 | 2.556162e-51 | -8.615850e-47 |
| Msa0546080 | Msa1076520 | 0.851757 | 7.206654e-61 | -8.615850e-47 |
| Msa0546080 | Msa1079480 | 0.808100 | 3.656102e-50 | -8.615850e-47 |
| Msa0546080 | Msa1082150 | 0.842595 | 2.349849e-58 | -8.615850e-47 |
| Msa0546080 | Msa1093390 | 0.833747 | 4.464225e-56 | -8.615850e-47 |
| Msa0546080 | Msa1096510 | 0.805778 | 1.132600e-49 | -8.615850e-47 |
| Msa0546080 | Msa1096570 | 0.800548 | 1.368640e-48 | -8.615850e-47 |
| Msa0546080 | Msa1108140 | 0.819794 | 9.633916e-53 | -8.615850e-47 |
| Msa0546080 | Msa1122720 | 0.848450 | 6.081847e-60 | -8.615850e-47 |
| Msa0546080 | Msa1138450 | 0.812230 | 4.706032e-51 | -8.615850e-47 |
| Msa0546080 | Msa1142860 | -0.811696 | 6.152024e-51 | -8.615850e-47 |
| Msa0546080 | Msa1144730 | 0.871615 | 5.969712e-67 | -8.615850e-47 |
| Msa0546080 | Msa1144950 | 0.811053 | 8.486536e-51 | -8.615850e-47 |
| Msa0546080 | Msa1151820 | 0.805648 | 1.206074e-49 | -8.615850e-47 |
| Msa0546080 | Msa1162330 | 0.802665 | 5.037236e-49 | -8.615850e-47 |
| Msa0546080 | Msa1173380 | 0.853523 | 2.259464e-61 | -8.615850e-47 |
| Msa0546080 | Msa1182800 | 0.848895 | 4.577189e-60 | -8.615850e-47 |
| Msa0546080 | Msa1182830 | 0.847088 | 1.442483e-59 | -8.615850e-47 |
| Msa0546080 | Msa1184010 | 0.820398 | 7.004902e-53 | -8.615850e-47 |
| Msa0546080 | Msa1211300 | 0.807850 | 4.132685e-50 | -8.615850e-47 |
| Msa0546080 | Msa1211390 | 0.825044 | 5.807679e-54 | -8.615850e-47 |
| Msa0546080 | Msa1219780 | -0.805649 | 1.205365e-49 | -8.615850e-47 |
| Msa0546080 | Msa1222030 | -0.801555 | 8.518410e-49 | -8.615850e-47 |
| Msa0546080 | Msa1228350 | 0.807674 | 4.504971e-50 | -8.615850e-47 |
| Msa0546080 | Msa1243730 | 0.810103 | 1.361312e-50 | -8.615850e-47 |
| Msa0546080 | Msa1255020 | 0.830376 | 3.041257e-55 | -8.615850e-47 |
| Msa0546080 | Msa1266710 | -0.808198 | 3.483713e-50 | -8.615850e-47 |
| Msa0546080 | Msa1272950 | 0.833781 | 4.378004e-56 | -8.615850e-47 |
| Msa0546080 | Msa1293050 | 0.814943 | 1.190764e-51 | -8.615850e-47 |
| Msa0546080 | Msa1295470 | 0.826657 | 2.405422e-54 | -8.615850e-47 |
| Msa0546080 | Msa1306190 | 0.830835 | 2.347681e-55 | -8.615850e-47 |
| Msa0546080 | Msa1306200 | 0.849269 | 3.603506e-60 | -8.615850e-47 |
| Msa0546080 | Msa1326400 | 0.813156 | 2.952013e-51 | -8.615850e-47 |
| Msa0546080 | Msa1338590 | 0.851962 | 6.305969e-61 | -8.615850e-47 |
| Msa0546080 | Msa1349810 | 0.866514 | 2.697736e-65 | -8.615850e-47 |
| Msa0546080 | Msa1354090 | 0.845505 | 3.893820e-59 | -8.615850e-47 |
| Msa0546080 | Msa1358340 | 0.838645 | 2.542192e-57 | -8.615850e-47 |
| Msa0546080 | Msa1359620 | 0.825191 | 5.361763e-54 | -8.615850e-47 |
| Msa0546080 | Msa1359890 | 0.885811 | 5.893027e-72 | -8.615850e-47 |
| Msa0546080 | Msa1361190 | 0.857153 | 1.981578e-62 | -8.615850e-47 |
| Msa0546080 | Msa1361200 | 0.810198 | 1.298527e-50 | -8.615850e-47 |
| Msa0546080 | Msa1369180 | 0.830687 | 2.552187e-55 | -8.615850e-47 |
| Msa0546080 | Msa1376070 | -0.807835 | 4.162376e-50 | -8.615850e-47 |
| Msa0546080 | Msa1386250 | 0.802796 | 4.733074e-49 | -8.615850e-47 |
| Msa0546080 | Msa1394900 | 0.835601 | 1.526266e-56 | -8.615850e-47 |
| Msa0546080 | Msa1403700 | 0.822495 | 2.297515e-53 | -8.615850e-47 |
| Msa0546080 | Msa1406020 | 0.852779 | 3.690042e-61 | -8.615850e-47 |
| Msa0546080 | Msa1407210 | -0.815595 | 8.529722e-52 | -8.615850e-47 |
| Msa0546080 | Msa1434660 | 0.851123 | 1.089186e-60 | -8.615850e-47 |
| Msa0546080 | Msa1439120 | 0.811445 | 6.977989e-51 | -8.615850e-47 |
| Msa0546080 | Msa1440220 | 0.803848 | 2.865597e-49 | -8.615850e-47 |
| Msa0546080 | Msa1443550 | 0.821196 | 4.590725e-53 | -8.615850e-47 |
| Msa0546080 | Msa1455660 | 0.806747 | 7.078992e-50 | -8.615850e-47 |
| Msa0546080 | Msa1456620 | 0.806683 | 7.303743e-50 | -8.615850e-47 |
| Msa0546080 | Msa1459540 | 0.823849 | 1.109782e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546080 | MtrunA17_Chr4g0027171 | 95.918 | 196 | 8 | 0 | 1 | 196 | 1 | 196 | 5.24e-141 | 391 |
| Msa0546080 | MtrunA17_Chr2g0320881 | 54.286 | 175 | 68 | 5 | 15 | 182 | 8 | 177 | 6.04e-57 | 178 |
| Msa0546080 | MtrunA17_Chr4g0056791 | 43.077 | 130 | 58 | 2 | 69 | 196 | 57 | 172 | 2.36e-28 | 104 |
| Msa0546080 | MtrunA17_Chr5g0398651 | 51.724 | 87 | 42 | 0 | 69 | 155 | 26 | 112 | 5.75e-25 | 94.0 |
| Msa0546080 | MtrunA17_Chr5g0398661 | 40.741 | 81 | 48 | 0 | 72 | 152 | 117 | 197 | 8.05e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0546080 | AT2G27830.1 | 47.959 | 196 | 94 | 4 | 1 | 194 | 1 | 190 | 4.50e-50 | 160 |
| Msa0546080 | AT4G22758.1 | 38.462 | 91 | 54 | 1 | 68 | 158 | 119 | 207 | 8.73e-13 | 65.5 |
| Msa0546080 | AT1G70780.1 | 30.328 | 122 | 79 | 3 | 71 | 188 | 16 | 135 | 8.09e-12 | 60.8 |
Find 61 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTTCTTCAAGCTTCTT+TGG | 0.205520 | 4_1:-37274803 | None:intergenic |
| ATAAATAAACAATAAATTAT+TGG | 0.205872 | 4_1:-37275001 | None:intergenic |
| GCCGACGAAGTTACTCATTA+AGG | 0.295975 | 4_1:+37274194 | Msa0546080:CDS |
| GAGTAACTTCGTCGGCTGTC+TGG | 0.327050 | 4_1:-37274187 | None:intergenic |
| GCTTCCTTCGACGGCAAGAT+TGG | 0.327598 | 4_1:-37274327 | None:intergenic |
| TTGCCGCACGCTTCCTGTCC+TGG | 0.374159 | 4_1:-37274137 | None:intergenic |
| TAAACGACGCCGTTACGTTA+TGG | 0.389603 | 4_1:-37274838 | None:intergenic |
| AGATAGAAATGAGAAGCTTA+AGG | 0.392238 | 4_1:+37274751 | Msa0546080:CDS |
| GAGTTTCCACATGGCTGTTC+CGG | 0.400514 | 4_1:-37274008 | None:intergenic |
| ATTTCTTGATATGAAATGAT+TGG | 0.413368 | 4_1:+37274921 | Msa0546080:exon |
| ACAAGGTCCGGCATAGTCTT+TGG | 0.414724 | 4_1:-37274114 | None:intergenic |
| GAAATACTAGTAACTGTTGT+TGG | 0.429120 | 4_1:-37274979 | None:intergenic |
| AATGAGAAGCTTAAGGAAAT+CGG | 0.435447 | 4_1:+37274758 | Msa0546080:CDS |
| ATTTGATAGCGGAGGCTGTA+AGG | 0.439277 | 4_1:+37274280 | Msa0546080:CDS |
| GGGTTGGAGAAGATGAGGTT+TGG | 0.453885 | 4_1:-37273918 | None:intergenic |
| ACTCATTAAGGTTACGATGA+TGG | 0.455220 | 4_1:+37274206 | Msa0546080:CDS |
| CTCATTAAGGTTACGATGAT+GGG | 0.455912 | 4_1:+37274207 | Msa0546080:CDS |
| TTTCTTGATATGAAATGATT+GGG | 0.473375 | 4_1:+37274922 | Msa0546080:exon |
| AGTAACTTCGTCGGCTGTCT+GGG | 0.474432 | 4_1:-37274186 | None:intergenic |
| ATAACCAGACAAAGCGAGAA+TGG | 0.480282 | 4_1:-37273865 | None:intergenic |
| CACGCTTCCTGTCCTGGACA+AGG | 0.482528 | 4_1:-37274131 | None:intergenic |
| TTCCTGTCCTGGACAAGGTC+CGG | 0.485224 | 4_1:-37274126 | None:intergenic |
| ATCTATAGTGAGGAAAATCA+AGG | 0.497119 | 4_1:-37273939 | None:intergenic |
| GGCAATGACTTCTTCGCCAC+CGG | 0.515088 | 4_1:+37274155 | Msa0546080:CDS |
| GTTACGATGATGGGCAGCCT+TGG | 0.521614 | 4_1:+37274216 | Msa0546080:CDS |
| TGCCGGACCTTGTCCAGGAC+AGG | 0.523940 | 4_1:+37274124 | Msa0546080:CDS |
| GACTATGCCGGACCTTGTCC+AGG | 0.528186 | 4_1:+37274119 | Msa0546080:CDS |
| CTCGCCTGTGAGTTTCCACA+TGG | 0.535722 | 4_1:-37274017 | None:intergenic |
| ATGACGATGGAGTCGACGGT+TGG | 0.536486 | 4_1:+37274255 | Msa0546080:CDS |
| ATCAAGGGTTGGAGAAGATG+AGG | 0.542417 | 4_1:-37273923 | None:intergenic |
| CACTGTCCAGTGCAAAACTC+CGG | 0.545078 | 4_1:+37274088 | Msa0546080:CDS |
| CCGGCATAGTCTTTGGCCGC+CGG | 0.545096 | 4_1:-37274107 | None:intergenic |
| AAGCAAGAAGCTTCCTTCGA+CGG | 0.546345 | 4_1:-37274336 | None:intergenic |
| AGCTTAAGGAAATCGGATCA+AGG | 0.548071 | 4_1:+37274765 | Msa0546080:CDS |
| GTAAGGTTGTATGTTAAAGA+AGG | 0.550051 | 4_1:+37274297 | Msa0546080:CDS |
| CCGTCCAATCTTGCCGTCGA+AGG | 0.553306 | 4_1:+37274323 | Msa0546080:CDS |
| CATCGTCATTAACACTTGCA+CGG | 0.554830 | 4_1:-37274241 | None:intergenic |
| TTTCCACATGGCTGTTCCGG+TGG | 0.557717 | 4_1:-37274005 | None:intergenic |
| ATCGTCATTAACACTTGCAC+GGG | 0.561873 | 4_1:-37274240 | None:intergenic |
| CCTTCGACGGCAAGATTGGA+CGG | 0.570300 | 4_1:-37274323 | None:intergenic |
| CGTTTGACATGGTGGTAAAG+TGG | 0.577598 | 4_1:-37273975 | None:intergenic |
| AGTAACTGTTGTTGGCAGCA+TGG | 0.587933 | 4_1:-37274971 | None:intergenic |
| ACAGCCATGTGGAAACTCAC+AGG | 0.594791 | 4_1:+37274013 | Msa0546080:CDS |
| GTTAATGACGATGGAGTCGA+CGG | 0.597176 | 4_1:+37274251 | Msa0546080:CDS |
| TAGTGAGGAAAATCAAGGGT+TGG | 0.598377 | 4_1:-37273934 | None:intergenic |
| CCGGCGGCCAAAGACTATGC+CGG | 0.600487 | 4_1:+37274107 | Msa0546080:CDS |
| TTAACACTTGCACGGGACCA+AGG | 0.603739 | 4_1:-37274233 | None:intergenic |
| CGTGCAAGTGTTAATGACGA+TGG | 0.614536 | 4_1:+37274242 | Msa0546080:CDS |
| AAGCTTGAAGAAAGTGACAA+TGG | 0.627431 | 4_1:+37274809 | Msa0546080:CDS |
| ACCTTAATGAGTAACTTCGT+CGG | 0.631958 | 4_1:-37274195 | None:intergenic |
| TCTATAGTGAGGAAAATCAA+GGG | 0.637563 | 4_1:-37273938 | None:intergenic |
| TATCTGAAATATCTATAGTG+AGG | 0.647624 | 4_1:-37273949 | None:intergenic |
| GGTTGGAGATTTGATAGCGG+AGG | 0.649039 | 4_1:+37274272 | Msa0546080:CDS |
| TGTCCAGGACAGGAAGCGTG+CGG | 0.659036 | 4_1:+37274134 | Msa0546080:CDS |
| CTTGAAGAAAGTGACAATGG+TGG | 0.660090 | 4_1:+37274812 | Msa0546080:CDS |
| TTGTTGGCAGCATGGACAAG+TGG | 0.673750 | 4_1:-37274963 | None:intergenic |
| TGGTGGAGACCATAACGTAA+CGG | 0.684404 | 4_1:+37274829 | Msa0546080:CDS |
| TGTCCAGTGCAAAACTCCGG+CGG | 0.689368 | 4_1:+37274091 | Msa0546080:CDS |
| CATGTGGAAACTCACAGGCG+AGG | 0.700520 | 4_1:+37274018 | Msa0546080:CDS |
| AAACCACCGGAACAGCCATG+TGG | 0.703928 | 4_1:+37274002 | Msa0546080:CDS |
| GACGGTTGGAGATTTGATAG+CGG | 0.725699 | 4_1:+37274269 | Msa0546080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAGGTCTTTATTTTTT+TGG | + | chr4_1:37274525-37274544 | Msa0546080:intron | 15.0% |
| !!! | ATGTAGTTATTATTTTTTGT+TGG | + | chr4_1:37274595-37274614 | Msa0546080:intron | 15.0% |
| !!! | ATATTAGGTCTTTATTTTTT+TGG | + | chr4_1:37274525-37274544 | Msa0546080:intron | 15.0% |
| !!! | ATGTAGTTATTATTTTTTGT+TGG | + | chr4_1:37274595-37274614 | Msa0546080:intron | 15.0% |
| !! | TGAACTATGAAAACTAAAAT+TGG | - | chr4_1:37274407-37274426 | None:intergenic | 20.0% |
| !!! | TAGTTATTATTTTTTGTTGG+AGG | + | chr4_1:37274598-37274617 | Msa0546080:intron | 20.0% |
| !!! | AGTTATTATTTTTTGTTGGA+GGG | + | chr4_1:37274599-37274618 | Msa0546080:intron | 20.0% |
| !! | ATTTCTTGATATGAAATGAT+TGG | + | chr4_1:37274921-37274940 | Msa0546080:exon | 20.0% |
| !! | TTTCTTGATATGAAATGATT+GGG | + | chr4_1:37274922-37274941 | Msa0546080:exon | 20.0% |
| !! | TGAACTATGAAAACTAAAAT+TGG | - | chr4_1:37274407-37274426 | None:intergenic | 20.0% |
| !!! | TAGTTATTATTTTTTGTTGG+AGG | + | chr4_1:37274598-37274617 | Msa0546080:intron | 20.0% |
| !!! | AGTTATTATTTTTTGTTGGA+GGG | + | chr4_1:37274599-37274618 | Msa0546080:intron | 20.0% |
| !! | ATTTCTTGATATGAAATGAT+TGG | + | chr4_1:37274921-37274940 | Msa0546080:exon | 20.0% |
| !! | TTTCTTGATATGAAATGATT+GGG | + | chr4_1:37274922-37274941 | Msa0546080:exon | 20.0% |
| !! | TATCTGAAATATCTATAGTG+AGG | - | chr4_1:37273952-37273971 | None:intergenic | 25.0% |
| ! | ACTAGAACAACGTAAATATT+AGG | + | chr4_1:37274510-37274529 | Msa0546080:intron | 25.0% |
| !! | TATCTGAAATATCTATAGTG+AGG | - | chr4_1:37273952-37273971 | None:intergenic | 25.0% |
| ! | ACTAGAACAACGTAAATATT+AGG | + | chr4_1:37274510-37274529 | Msa0546080:intron | 25.0% |
| TCTATAGTGAGGAAAATCAA+GGG | - | chr4_1:37273941-37273960 | None:intergenic | 30.0% | |
| ATCTATAGTGAGGAAAATCA+AGG | - | chr4_1:37273942-37273961 | None:intergenic | 30.0% | |
| ! | GAGAAATCATCATCTTTTCA+TGG | + | chr4_1:37274051-37274070 | Msa0546080:CDS | 30.0% |
| GTAAGGTTGTATGTTAAAGA+AGG | + | chr4_1:37274297-37274316 | Msa0546080:CDS | 30.0% | |
| TATGACGTATCTAATTTCTC+TGG | + | chr4_1:37274471-37274490 | Msa0546080:intron | 30.0% | |
| !!! | NTGATTTGTTTTATGAGTGC+AGG | + | chr4_1:37274725-37274744 | Msa0546080:intron | 30.0% |
| AGATAGAAATGAGAAGCTTA+AGG | + | chr4_1:37274751-37274770 | Msa0546080:CDS | 30.0% | |
| AATGAGAAGCTTAAGGAAAT+CGG | + | chr4_1:37274758-37274777 | Msa0546080:CDS | 30.0% | |
| GAAATACTAGTAACTGTTGT+TGG | - | chr4_1:37274982-37275001 | None:intergenic | 30.0% | |
| TCTATAGTGAGGAAAATCAA+GGG | - | chr4_1:37273941-37273960 | None:intergenic | 30.0% | |
| ATCTATAGTGAGGAAAATCA+AGG | - | chr4_1:37273942-37273961 | None:intergenic | 30.0% | |
| ! | GAGAAATCATCATCTTTTCA+TGG | + | chr4_1:37274051-37274070 | Msa0546080:CDS | 30.0% |
| GTAAGGTTGTATGTTAAAGA+AGG | + | chr4_1:37274297-37274316 | Msa0546080:CDS | 30.0% | |
| TATGACGTATCTAATTTCTC+TGG | + | chr4_1:37274471-37274490 | Msa0546080:intron | 30.0% | |
| !!! | NTGATTTGTTTTATGAGTGC+AGG | + | chr4_1:37274725-37274744 | Msa0546080:intron | 30.0% |
| AGATAGAAATGAGAAGCTTA+AGG | + | chr4_1:37274751-37274770 | Msa0546080:CDS | 30.0% | |
| AATGAGAAGCTTAAGGAAAT+CGG | + | chr4_1:37274758-37274777 | Msa0546080:CDS | 30.0% | |
| GAAATACTAGTAACTGTTGT+TGG | - | chr4_1:37274982-37275001 | None:intergenic | 30.0% | |
| !!! | AGGTTTGGTTTTGTGGTTTA+TGG | - | chr4_1:37273906-37273925 | None:intergenic | 35.0% |
| ACCTTAATGAGTAACTTCGT+CGG | - | chr4_1:37274198-37274217 | None:intergenic | 35.0% | |
| ACTCATTAAGGTTACGATGA+TGG | + | chr4_1:37274206-37274225 | Msa0546080:CDS | 35.0% | |
| CTCATTAAGGTTACGATGAT+GGG | + | chr4_1:37274207-37274226 | Msa0546080:CDS | 35.0% | |
| TCACTTTCTTCAAGCTTCTT+TGG | - | chr4_1:37274806-37274825 | None:intergenic | 35.0% | |
| AAGCTTGAAGAAAGTGACAA+TGG | + | chr4_1:37274809-37274828 | Msa0546080:CDS | 35.0% | |
| ! | CAAGTTGAAAAAGTGAGCAA+AGG | + | chr4_1:37274875-37274894 | Msa0546080:CDS | 35.0% |
| ! | GAAAAAGTGAGCAAAGGTTT+TGG | + | chr4_1:37274881-37274900 | Msa0546080:CDS | 35.0% |
| !! | GCAAAGGTTTTGGTCTTTTA+AGG | + | chr4_1:37274891-37274910 | Msa0546080:CDS | 35.0% |
| !!! | AGGTTTGGTTTTGTGGTTTA+TGG | - | chr4_1:37273906-37273925 | None:intergenic | 35.0% |
| ACCTTAATGAGTAACTTCGT+CGG | - | chr4_1:37274198-37274217 | None:intergenic | 35.0% | |
| ACTCATTAAGGTTACGATGA+TGG | + | chr4_1:37274206-37274225 | Msa0546080:CDS | 35.0% | |
| CTCATTAAGGTTACGATGAT+GGG | + | chr4_1:37274207-37274226 | Msa0546080:CDS | 35.0% | |
| TCACTTTCTTCAAGCTTCTT+TGG | - | chr4_1:37274806-37274825 | None:intergenic | 35.0% | |
| AAGCTTGAAGAAAGTGACAA+TGG | + | chr4_1:37274809-37274828 | Msa0546080:CDS | 35.0% | |
| ! | CAAGTTGAAAAAGTGAGCAA+AGG | + | chr4_1:37274875-37274894 | Msa0546080:CDS | 35.0% |
| ! | GAAAAAGTGAGCAAAGGTTT+TGG | + | chr4_1:37274881-37274900 | Msa0546080:CDS | 35.0% |
| !! | GCAAAGGTTTTGGTCTTTTA+AGG | + | chr4_1:37274891-37274910 | Msa0546080:CDS | 35.0% |
| ! | TTTTCCATTCTCGCTTTGTC+TGG | + | chr4_1:37273861-37273880 | Msa0546080:five_prime_UTR | 40.0% |
| ATAACCAGACAAAGCGAGAA+TGG | - | chr4_1:37273868-37273887 | None:intergenic | 40.0% | |
| !!! | GAAGATGAGGTTTGGTTTTG+TGG | - | chr4_1:37273913-37273932 | None:intergenic | 40.0% |
| TAGTGAGGAAAATCAAGGGT+TGG | - | chr4_1:37273937-37273956 | None:intergenic | 40.0% | |
| ! | GTTTTTGACGTTTGACATGG+TGG | - | chr4_1:37273986-37274005 | None:intergenic | 40.0% |
| ! | GTGGTTTTTGACGTTTGACA+TGG | - | chr4_1:37273989-37274008 | None:intergenic | 40.0% |
| TGTCAAACGTCAAAAACCAC+CGG | + | chr4_1:37273989-37274008 | Msa0546080:CDS | 40.0% | |
| ATCGTCATTAACACTTGCAC+GGG | - | chr4_1:37274243-37274262 | None:intergenic | 40.0% | |
| CATCGTCATTAACACTTGCA+CGG | - | chr4_1:37274244-37274263 | None:intergenic | 40.0% | |
| GTACCATTGTAGATGCTCTT+AGG | + | chr4_1:37274550-37274569 | Msa0546080:intron | 40.0% | |
| !! | AGACCTAAGAGCATCTACAA+TGG | - | chr4_1:37274556-37274575 | None:intergenic | 40.0% |
| AGCTTAAGGAAATCGGATCA+AGG | + | chr4_1:37274765-37274784 | Msa0546080:CDS | 40.0% | |
| CTTGAAGAAAGTGACAATGG+TGG | + | chr4_1:37274812-37274831 | Msa0546080:CDS | 40.0% | |
| !!! | GCTCACTTTTTCAACTTGTC+TGG | - | chr4_1:37274873-37274892 | None:intergenic | 40.0% |
| ! | TTTTCCATTCTCGCTTTGTC+TGG | + | chr4_1:37273861-37273880 | Msa0546080:five_prime_UTR | 40.0% |
| ATAACCAGACAAAGCGAGAA+TGG | - | chr4_1:37273868-37273887 | None:intergenic | 40.0% | |
| !!! | GAAGATGAGGTTTGGTTTTG+TGG | - | chr4_1:37273913-37273932 | None:intergenic | 40.0% |
| TAGTGAGGAAAATCAAGGGT+TGG | - | chr4_1:37273937-37273956 | None:intergenic | 40.0% | |
| ! | GTTTTTGACGTTTGACATGG+TGG | - | chr4_1:37273986-37274005 | None:intergenic | 40.0% |
| ! | GTGGTTTTTGACGTTTGACA+TGG | - | chr4_1:37273989-37274008 | None:intergenic | 40.0% |
| TGTCAAACGTCAAAAACCAC+CGG | + | chr4_1:37273989-37274008 | Msa0546080:CDS | 40.0% | |
| ATCGTCATTAACACTTGCAC+GGG | - | chr4_1:37274243-37274262 | None:intergenic | 40.0% | |
| CATCGTCATTAACACTTGCA+CGG | - | chr4_1:37274244-37274263 | None:intergenic | 40.0% | |
| GTACCATTGTAGATGCTCTT+AGG | + | chr4_1:37274550-37274569 | Msa0546080:intron | 40.0% | |
| !! | AGACCTAAGAGCATCTACAA+TGG | - | chr4_1:37274556-37274575 | None:intergenic | 40.0% |
| AGCTTAAGGAAATCGGATCA+AGG | + | chr4_1:37274765-37274784 | Msa0546080:CDS | 40.0% | |
| CTTGAAGAAAGTGACAATGG+TGG | + | chr4_1:37274812-37274831 | Msa0546080:CDS | 40.0% | |
| !!! | GCTCACTTTTTCAACTTGTC+TGG | - | chr4_1:37274873-37274892 | None:intergenic | 40.0% |
| ATCAAGGGTTGGAGAAGATG+AGG | - | chr4_1:37273926-37273945 | None:intergenic | 45.0% | |
| CGTTTGACATGGTGGTAAAG+TGG | - | chr4_1:37273978-37273997 | None:intergenic | 45.0% | |
| GCCGACGAAGTTACTCATTA+AGG | + | chr4_1:37274194-37274213 | Msa0546080:CDS | 45.0% | |
| CGTGCAAGTGTTAATGACGA+TGG | + | chr4_1:37274242-37274261 | Msa0546080:CDS | 45.0% | |
| GTTAATGACGATGGAGTCGA+CGG | + | chr4_1:37274251-37274270 | Msa0546080:CDS | 45.0% | |
| GACGGTTGGAGATTTGATAG+CGG | + | chr4_1:37274269-37274288 | Msa0546080:CDS | 45.0% | |
| !! | ATTTGATAGCGGAGGCTGTA+AGG | + | chr4_1:37274280-37274299 | Msa0546080:CDS | 45.0% |
| AAGCAAGAAGCTTCCTTCGA+CGG | - | chr4_1:37274339-37274358 | None:intergenic | 45.0% | |
| TGGTGGAGACCATAACGTAA+CGG | + | chr4_1:37274829-37274848 | Msa0546080:CDS | 45.0% | |
| TAAACGACGCCGTTACGTTA+TGG | - | chr4_1:37274841-37274860 | None:intergenic | 45.0% | |
| AGTAACTGTTGTTGGCAGCA+TGG | - | chr4_1:37274974-37274993 | None:intergenic | 45.0% | |
| ATCAAGGGTTGGAGAAGATG+AGG | - | chr4_1:37273926-37273945 | None:intergenic | 45.0% | |
| CGTTTGACATGGTGGTAAAG+TGG | - | chr4_1:37273978-37273997 | None:intergenic | 45.0% | |
| GCCGACGAAGTTACTCATTA+AGG | + | chr4_1:37274194-37274213 | Msa0546080:CDS | 45.0% | |
| CGTGCAAGTGTTAATGACGA+TGG | + | chr4_1:37274242-37274261 | Msa0546080:CDS | 45.0% | |
| GTTAATGACGATGGAGTCGA+CGG | + | chr4_1:37274251-37274270 | Msa0546080:CDS | 45.0% | |
| GACGGTTGGAGATTTGATAG+CGG | + | chr4_1:37274269-37274288 | Msa0546080:CDS | 45.0% | |
| !! | ATTTGATAGCGGAGGCTGTA+AGG | + | chr4_1:37274280-37274299 | Msa0546080:CDS | 45.0% |
| AAGCAAGAAGCTTCCTTCGA+CGG | - | chr4_1:37274339-37274358 | None:intergenic | 45.0% | |
| TGGTGGAGACCATAACGTAA+CGG | + | chr4_1:37274829-37274848 | Msa0546080:CDS | 45.0% | |
| TAAACGACGCCGTTACGTTA+TGG | - | chr4_1:37274841-37274860 | None:intergenic | 45.0% | |
| AGTAACTGTTGTTGGCAGCA+TGG | - | chr4_1:37274974-37274993 | None:intergenic | 45.0% | |
| !! | ATAAATAAACAATAAATTAT+TGG | - | chr4_1:37275004-37275023 | None:intergenic | 5.0% |
| !! | ATAAATAAACAATAAATTAT+TGG | - | chr4_1:37275004-37275023 | None:intergenic | 5.0% |
| GGGTTGGAGAAGATGAGGTT+TGG | - | chr4_1:37273921-37273940 | None:intergenic | 50.0% | |
| GAGTTTCCACATGGCTGTTC+CGG | - | chr4_1:37274011-37274030 | None:intergenic | 50.0% | |
| ACAGCCATGTGGAAACTCAC+AGG | + | chr4_1:37274013-37274032 | Msa0546080:CDS | 50.0% | |
| CACTGTCCAGTGCAAAACTC+CGG | + | chr4_1:37274088-37274107 | Msa0546080:CDS | 50.0% | |
| ACAAGGTCCGGCATAGTCTT+TGG | - | chr4_1:37274117-37274136 | None:intergenic | 50.0% | |
| TGTCTGGGAAAAAACTCCGG+TGG | - | chr4_1:37274174-37274193 | None:intergenic | 50.0% | |
| GGCTGTCTGGGAAAAAACTC+CGG | - | chr4_1:37274177-37274196 | None:intergenic | 50.0% | |
| ! | AGTAACTTCGTCGGCTGTCT+GGG | - | chr4_1:37274189-37274208 | None:intergenic | 50.0% |
| TTAACACTTGCACGGGACCA+AGG | - | chr4_1:37274236-37274255 | None:intergenic | 50.0% | |
| !! | GGTTGGAGATTTGATAGCGG+AGG | + | chr4_1:37274272-37274291 | Msa0546080:CDS | 50.0% |
| TTGTTGGCAGCATGGACAAG+TGG | - | chr4_1:37274966-37274985 | None:intergenic | 50.0% | |
| GGGTTGGAGAAGATGAGGTT+TGG | - | chr4_1:37273921-37273940 | None:intergenic | 50.0% | |
| GAGTTTCCACATGGCTGTTC+CGG | - | chr4_1:37274011-37274030 | None:intergenic | 50.0% | |
| ACAGCCATGTGGAAACTCAC+AGG | + | chr4_1:37274013-37274032 | Msa0546080:CDS | 50.0% | |
| CACTGTCCAGTGCAAAACTC+CGG | + | chr4_1:37274088-37274107 | Msa0546080:CDS | 50.0% | |
| ACAAGGTCCGGCATAGTCTT+TGG | - | chr4_1:37274117-37274136 | None:intergenic | 50.0% | |
| TGTCTGGGAAAAAACTCCGG+TGG | - | chr4_1:37274174-37274193 | None:intergenic | 50.0% | |
| GGCTGTCTGGGAAAAAACTC+CGG | - | chr4_1:37274177-37274196 | None:intergenic | 50.0% | |
| ! | AGTAACTTCGTCGGCTGTCT+GGG | - | chr4_1:37274189-37274208 | None:intergenic | 50.0% |
| TTAACACTTGCACGGGACCA+AGG | - | chr4_1:37274236-37274255 | None:intergenic | 50.0% | |
| !! | GGTTGGAGATTTGATAGCGG+AGG | + | chr4_1:37274272-37274291 | Msa0546080:CDS | 50.0% |
| TTGTTGGCAGCATGGACAAG+TGG | - | chr4_1:37274966-37274985 | None:intergenic | 50.0% | |
| AAACCACCGGAACAGCCATG+TGG | + | chr4_1:37274002-37274021 | Msa0546080:CDS | 55.0% | |
| TTTCCACATGGCTGTTCCGG+TGG | - | chr4_1:37274008-37274027 | None:intergenic | 55.0% | |
| CTCGCCTGTGAGTTTCCACA+TGG | - | chr4_1:37274020-37274039 | None:intergenic | 55.0% | |
| CATGTGGAAACTCACAGGCG+AGG | + | chr4_1:37274018-37274037 | Msa0546080:CDS | 55.0% | |
| TGTCCAGTGCAAAACTCCGG+CGG | + | chr4_1:37274091-37274110 | Msa0546080:CDS | 55.0% | |
| TTCCTGTCCTGGACAAGGTC+CGG | - | chr4_1:37274129-37274148 | None:intergenic | 55.0% | |
| GGCAATGACTTCTTCGCCAC+CGG | + | chr4_1:37274155-37274174 | Msa0546080:CDS | 55.0% | |
| ! | GAGTAACTTCGTCGGCTGTC+TGG | - | chr4_1:37274190-37274209 | None:intergenic | 55.0% |
| !! | GTTACGATGATGGGCAGCCT+TGG | + | chr4_1:37274216-37274235 | Msa0546080:CDS | 55.0% |
| ATGACGATGGAGTCGACGGT+TGG | + | chr4_1:37274255-37274274 | Msa0546080:CDS | 55.0% | |
| CCTTCGACGGCAAGATTGGA+CGG | - | chr4_1:37274326-37274345 | None:intergenic | 55.0% | |
| GCTTCCTTCGACGGCAAGAT+TGG | - | chr4_1:37274330-37274349 | None:intergenic | 55.0% | |
| AAACCACCGGAACAGCCATG+TGG | + | chr4_1:37274002-37274021 | Msa0546080:CDS | 55.0% | |
| TTTCCACATGGCTGTTCCGG+TGG | - | chr4_1:37274008-37274027 | None:intergenic | 55.0% | |
| CTCGCCTGTGAGTTTCCACA+TGG | - | chr4_1:37274020-37274039 | None:intergenic | 55.0% | |
| CATGTGGAAACTCACAGGCG+AGG | + | chr4_1:37274018-37274037 | Msa0546080:CDS | 55.0% | |
| TGTCCAGTGCAAAACTCCGG+CGG | + | chr4_1:37274091-37274110 | Msa0546080:CDS | 55.0% | |
| TTCCTGTCCTGGACAAGGTC+CGG | - | chr4_1:37274129-37274148 | None:intergenic | 55.0% | |
| GGCAATGACTTCTTCGCCAC+CGG | + | chr4_1:37274155-37274174 | Msa0546080:CDS | 55.0% | |
| ! | GAGTAACTTCGTCGGCTGTC+TGG | - | chr4_1:37274190-37274209 | None:intergenic | 55.0% |
| !! | GTTACGATGATGGGCAGCCT+TGG | + | chr4_1:37274216-37274235 | Msa0546080:CDS | 55.0% |
| ATGACGATGGAGTCGACGGT+TGG | + | chr4_1:37274255-37274274 | Msa0546080:CDS | 55.0% | |
| CCTTCGACGGCAAGATTGGA+CGG | - | chr4_1:37274326-37274345 | None:intergenic | 55.0% | |
| GCTTCCTTCGACGGCAAGAT+TGG | - | chr4_1:37274330-37274349 | None:intergenic | 55.0% | |
| GACTATGCCGGACCTTGTCC+AGG | + | chr4_1:37274119-37274138 | Msa0546080:CDS | 60.0% | |
| CACGCTTCCTGTCCTGGACA+AGG | - | chr4_1:37274134-37274153 | None:intergenic | 60.0% | |
| ! | TGTCCAGGACAGGAAGCGTG+CGG | + | chr4_1:37274134-37274153 | Msa0546080:CDS | 60.0% |
| CCGTCCAATCTTGCCGTCGA+AGG | + | chr4_1:37274323-37274342 | Msa0546080:CDS | 60.0% | |
| GACTATGCCGGACCTTGTCC+AGG | + | chr4_1:37274119-37274138 | Msa0546080:CDS | 60.0% | |
| CACGCTTCCTGTCCTGGACA+AGG | - | chr4_1:37274134-37274153 | None:intergenic | 60.0% | |
| ! | TGTCCAGGACAGGAAGCGTG+CGG | + | chr4_1:37274134-37274153 | Msa0546080:CDS | 60.0% |
| CCGTCCAATCTTGCCGTCGA+AGG | + | chr4_1:37274323-37274342 | Msa0546080:CDS | 60.0% | |
| ! | TGGCCGCCGGAGTTTTGCAC+TGG | - | chr4_1:37274097-37274116 | None:intergenic | 65.0% |
| CCGGCATAGTCTTTGGCCGC+CGG | - | chr4_1:37274110-37274129 | None:intergenic | 65.0% | |
| CCGGCGGCCAAAGACTATGC+CGG | + | chr4_1:37274107-37274126 | Msa0546080:CDS | 65.0% | |
| TGCCGGACCTTGTCCAGGAC+AGG | + | chr4_1:37274124-37274143 | Msa0546080:CDS | 65.0% | |
| TTGCCGCACGCTTCCTGTCC+TGG | - | chr4_1:37274140-37274159 | None:intergenic | 65.0% | |
| ! | TGGCCGCCGGAGTTTTGCAC+TGG | - | chr4_1:37274097-37274116 | None:intergenic | 65.0% |
| CCGGCATAGTCTTTGGCCGC+CGG | - | chr4_1:37274110-37274129 | None:intergenic | 65.0% | |
| CCGGCGGCCAAAGACTATGC+CGG | + | chr4_1:37274107-37274126 | Msa0546080:CDS | 65.0% | |
| TGCCGGACCTTGTCCAGGAC+AGG | + | chr4_1:37274124-37274143 | Msa0546080:CDS | 65.0% | |
| TTGCCGCACGCTTCCTGTCC+TGG | - | chr4_1:37274140-37274159 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 37273837 | 37275145 | 37273837 | ID=Msa0546080;Name=Msa0546080 |
| chr4_1 | mRNA | 37273837 | 37275145 | 37273837 | ID=Msa0546080-mRNA-1;Parent=Msa0546080;Name=Msa0546080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=151|1|1|1|1|1|2|211|196 |
| chr4_1 | exon | 37273837 | 37274390 | 37273837 | ID=Msa0546080-mRNA-1:exon:9468;Parent=Msa0546080-mRNA-1 |
| chr4_1 | exon | 37274747 | 37275145 | 37274747 | ID=Msa0546080-mRNA-1:exon:9469;Parent=Msa0546080-mRNA-1 |
| chr4_1 | five_prime_UTR | 37273837 | 37273987 | 37273837 | ID=Msa0546080-mRNA-1:five_prime_utr;Parent=Msa0546080-mRNA-1 |
| chr4_1 | CDS | 37273988 | 37274390 | 37273988 | ID=Msa0546080-mRNA-1:cds;Parent=Msa0546080-mRNA-1 |
| chr4_1 | CDS | 37274747 | 37274934 | 37274747 | ID=Msa0546080-mRNA-1:cds;Parent=Msa0546080-mRNA-1 |
| chr4_1 | three_prime_UTR | 37274935 | 37275145 | 37274935 | ID=Msa0546080-mRNA-1:three_prime_utr;Parent=Msa0546080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
