AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1439070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439070 MtrunA17_Chr8g0384741 88.889 144 16 0 1 144 399 542 1.19e-85 260
Msa1439070 MtrunA17_Chr3g0124811 49.650 143 72 0 1 143 348 490 2.28e-48 162
Msa1439070 MtrunA17_Chr2g0328781 41.429 140 82 0 2 141 354 493 5.28e-30 112
Msa1439070 MtrunA17_Chr8g0372381 41.007 139 82 0 2 140 340 478 1.09e-29 112
Msa1439070 MtrunA17_Chr4g0032441 44.531 128 71 0 2 129 339 466 2.03e-29 111
Msa1439070 MtrunA17_Chr1g0159811 45.669 127 45 4 1 103 346 472 6.26e-28 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439070 AT4G34240.3 55.245 143 64 0 2 144 264 406 7.64e-54 174
Msa1439070 AT4G34240.4 55.245 143 64 0 2 144 391 533 3.97e-53 176
Msa1439070 AT4G34240.1 55.245 143 64 0 2 144 406 548 5.29e-53 176
Msa1439070 AT1G44170.3 48.252 143 74 0 1 143 279 421 9.37e-47 156
Msa1439070 AT1G44170.1 48.252 143 74 0 1 143 342 484 3.48e-46 156
Msa1439070 AT1G44170.2 48.252 143 74 0 1 143 342 484 3.48e-46 156
Msa1439070 AT4G36250.1 42.657 143 82 0 2 144 342 484 9.57e-32 117

Find 52 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATGCAAGAGGAGATATT+TGG 0.197595 tig0028698:-53154 Msa1439070:CDS
GATTGCTCCAACTATCTTAT+TGG 0.199481 tig0028698:-53197 Msa1439070:five_prime_UTR
ACAGTAATAATTGGCAAAAT+TGG 0.249721 tig0028698:+53130 None:intergenic
GCAACTCGTGGTTTGCCTTT+TGG 0.266266 tig0028698:-52288 Msa1439070:CDS
TATATAAAACTGATTTCTTA+TGG 0.269097 tig0028698:+52205 None:intergenic
ATAAATTTATTCACAGTGAT+TGG 0.311303 tig0028698:+51930 None:intergenic
ATGGTACTCACAGTAATAAT+TGG 0.320472 tig0028698:+53121 None:intergenic
GGTATCAGACAAAATTGTTT+AGG 0.335599 tig0028698:-53353 Msa1439070:five_prime_UTR
CAGATAATTCTTGCTTTGCT+TGG 0.345687 tig0028698:-52090 Msa1439070:CDS
ATTCACAGTGATTGGGCCTC+TGG 0.347371 tig0028698:+51938 None:intergenic
TAATTCTTGCTTTGCTTGGA+TGG 0.383020 tig0028698:-52086 Msa1439070:CDS
TGTATATGGAGGGTACCTTA+TGG 0.386947 tig0028698:+52161 None:intergenic
TATGTGGACAAGATATCTTC+TGG 0.414474 tig0028698:-52927 Msa1439070:CDS
TAAATTTATTCACAGTGATT+GGG 0.421081 tig0028698:+51931 None:intergenic
AGATATGCAGCCAAAGGCTT+TGG 0.424118 tig0028698:+52981 None:intergenic
AAAATCAAGGCCAAAGCCTT+TGG 0.435468 tig0028698:-52991 Msa1439070:CDS
AGAGTTGGAGAAAGTGGAAT+GGG 0.441960 tig0028698:-52263 Msa1439070:CDS
TTATGCAAGAGGAGATATTT+GGG 0.457790 tig0028698:-53153 Msa1439070:CDS
GAAACTCTTGAATGAGGATA+AGG 0.463840 tig0028698:-53374 Msa1439070:five_prime_UTR
TTGGAGAGAGTTGGAGAAAG+TGG 0.478831 tig0028698:-52269 Msa1439070:CDS
CACGAGTCGTGCTATTGAGT+TGG 0.482693 tig0028698:+53377 None:intergenic
TATCAGTCTCTGATCTCTGA+TGG 0.485074 tig0028698:-52030 Msa1439070:three_prime_UTR
TTGATTCCGATCCATCCATA+AGG 0.489103 tig0028698:-52176 Msa1439070:CDS
TCCTTCTCAGGTGTATATGG+AGG 0.493263 tig0028698:+52150 None:intergenic
CCTTCTCAGGTGTATATGGA+GGG 0.495634 tig0028698:+52151 None:intergenic
GGAACATCCAATAAGATAGT+TGG 0.497071 tig0028698:+53190 None:intergenic
GAGAGTTGGAGAAAGTGGAA+TGG 0.507177 tig0028698:-52264 Msa1439070:CDS
ATCAGTCTCTGATCTCTGAT+GGG 0.511456 tig0028698:-52029 Msa1439070:three_prime_UTR
AAACAATGAGCAACTGAAGA+AGG 0.517946 tig0028698:-52952 Msa1439070:CDS
ATCAGACAAAATTGTTTAGG+AGG 0.520290 tig0028698:-53350 Msa1439070:five_prime_UTR
AGTGGAATGGGTTGCTACCA+TGG 0.521895 tig0028698:-52251 Msa1439070:CDS
TTTCTCCAACTCTCTCCAAA+AGG 0.522943 tig0028698:+52273 None:intergenic
GGATGTTCCACAAGAAGCTA+TGG 0.525082 tig0028698:-53176 Msa1439070:exon
TGCATAACCATAGCTTCTTG+TGG 0.525176 tig0028698:+53169 None:intergenic
TATGGAGGGTACCTTATGGA+TGG 0.573766 tig0028698:+52165 None:intergenic
GCTTTAGTATAATAAAATCA+AGG 0.574080 tig0028698:-53004 Msa1439070:CDS
AGAAGCTATGGTTATGCAAG+AGG 0.586940 tig0028698:-53164 Msa1439070:exon
GCAACTGAAGAAGGATTATG+TGG 0.588911 tig0028698:-52943 Msa1439070:CDS
TTTGTAAGGTTGAGGACCAG+AGG 0.589148 tig0028698:-51954 Msa1439070:three_prime_UTR
CCCTCCATATACACCTGAGA+AGG 0.591816 tig0028698:-52151 Msa1439070:CDS
AGGGTACCTTATGGATGGAT+CGG 0.593890 tig0028698:+52170 None:intergenic
AAAATTGTTTAGGAGGTCAG+AGG 0.602545 tig0028698:-53343 Msa1439070:five_prime_UTR
TTGGTGCAGGTTGCAACTCG+TGG 0.603431 tig0028698:-52300 Msa1439070:intron
CTATCAAAGAGAACTTTCCA+TGG 0.605714 tig0028698:+52234 None:intergenic
GTGAAGAGATATGCAGCCAA+AGG 0.606873 tig0028698:+52975 None:intergenic
ACTCGTGAAACTCTTGAATG+AGG 0.610650 tig0028698:-53380 Msa1439070:five_prime_UTR
AAATTGTTTAGGAGGTCAGA+GGG 0.611808 tig0028698:-53342 Msa1439070:five_prime_UTR
TGGACAAGATATCTTCTGGA+GGG 0.613322 tig0028698:-52923 Msa1439070:CDS
GTGGACAAGATATCTTCTGG+AGG 0.652280 tig0028698:-52924 Msa1439070:CDS
GGTCTAAATGATGATGTGCA+AGG 0.655883 tig0028698:-52065 Msa1439070:exon
GTCTAAATGATGATGTGCAA+GGG 0.657116 tig0028698:-52064 Msa1439070:exon
TCAGTCTCTGATCTCTGATG+GGG 0.664207 tig0028698:-52028 Msa1439070:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATAAAACTGATTTCTTA+TGG + tig0028698:53131-53150 None:intergenic 15.0%
!!! TATATAAAACTGATTTCTTA+TGG + tig0028698:53131-53150 None:intergenic 15.0%
!! GCTTTAGTATAATAAAATCA+AGG - tig0028698:52329-52348 Msa1439070:intron 20.0%
!! TTTCATAAATCTATTGTTCT+CGG - tig0028698:52528-52547 Msa1439070:intron 20.0%
!! TTCTCAAATTATTATTGTTG+TGG + tig0028698:52833-52852 None:intergenic 20.0%
!! AACCTTACAAAAAAAAATGT+AGG + tig0028698:53370-53389 None:intergenic 20.0%
!! TAAATTTATTCACAGTGATT+GGG + tig0028698:53405-53424 None:intergenic 20.0%
!! ATAAATTTATTCACAGTGAT+TGG + tig0028698:53406-53425 None:intergenic 20.0%
!! GCTTTAGTATAATAAAATCA+AGG - tig0028698:52329-52348 Msa1439070:intron 20.0%
!! TTTCATAAATCTATTGTTCT+CGG - tig0028698:52528-52547 Msa1439070:intron 20.0%
!! TTCTCAAATTATTATTGTTG+TGG + tig0028698:52833-52852 None:intergenic 20.0%
!! AACCTTACAAAAAAAAATGT+AGG + tig0028698:53370-53389 None:intergenic 20.0%
!! TAAATTTATTCACAGTGATT+GGG + tig0028698:53405-53424 None:intergenic 20.0%
!! ATAAATTTATTCACAGTGAT+TGG + tig0028698:53406-53425 None:intergenic 20.0%
! ACAGTAATAATTGGCAAAAT+TGG + tig0028698:52206-52225 None:intergenic 25.0%
!!! AACATTTACTTTTCCCTTTA+TGG + tig0028698:52234-52253 None:intergenic 25.0%
! TAATCCCTTAATTTCATCAA+AGG - tig0028698:52666-52685 Msa1439070:intron 25.0%
! TCTACCTTTGATGAAATTAA+GGG + tig0028698:52673-52692 None:intergenic 25.0%
! TTCTACCTTTGATGAAATTA+AGG + tig0028698:52674-52693 None:intergenic 25.0%
!! TTACGATCTAAATTTTGTAC+AGG - tig0028698:52734-52753 Msa1439070:intron 25.0%
! AAATATCACATTGACACATT+TGG - tig0028698:52868-52887 Msa1439070:intron 25.0%
! ATGTAGTACATATCTATGTA+TGG - tig0028698:52947-52966 Msa1439070:CDS 25.0%
! TCATGTCTATATCTTACATT+TGG + tig0028698:52978-52997 None:intergenic 25.0%
!! TGAGAAGGAAAAAATTTTGA+GGG - tig0028698:53197-53216 Msa1439070:five_prime_UTR 25.0%
! AAAAATATTGCCACCAAAAA+TGG + tig0028698:53223-53242 None:intergenic 25.0%
!!! CTCCTACATTTTTTTTTGTA+AGG - tig0028698:53365-53384 Msa1439070:five_prime_UTR 25.0%
!!! CATTTTTTTTTGTAAGGTTG+AGG - tig0028698:53371-53390 Msa1439070:five_prime_UTR 25.0%
! ACAGTAATAATTGGCAAAAT+TGG + tig0028698:52206-52225 None:intergenic 25.0%
!!! AACATTTACTTTTCCCTTTA+TGG + tig0028698:52234-52253 None:intergenic 25.0%
! TAATCCCTTAATTTCATCAA+AGG - tig0028698:52666-52685 Msa1439070:intron 25.0%
! TCTACCTTTGATGAAATTAA+GGG + tig0028698:52673-52692 None:intergenic 25.0%
! TTCTACCTTTGATGAAATTA+AGG + tig0028698:52674-52693 None:intergenic 25.0%
!! TTACGATCTAAATTTTGTAC+AGG - tig0028698:52734-52753 Msa1439070:intron 25.0%
! AAATATCACATTGACACATT+TGG - tig0028698:52868-52887 Msa1439070:intron 25.0%
! ATGTAGTACATATCTATGTA+TGG - tig0028698:52947-52966 Msa1439070:CDS 25.0%
! TCATGTCTATATCTTACATT+TGG + tig0028698:52978-52997 None:intergenic 25.0%
!! TGAGAAGGAAAAAATTTTGA+GGG - tig0028698:53197-53216 Msa1439070:five_prime_UTR 25.0%
! AAAAATATTGCCACCAAAAA+TGG + tig0028698:53223-53242 None:intergenic 25.0%
!!! CTCCTACATTTTTTTTTGTA+AGG - tig0028698:53365-53384 Msa1439070:five_prime_UTR 25.0%
!!! CATTTTTTTTTGTAAGGTTG+AGG - tig0028698:53371-53390 Msa1439070:five_prime_UTR 25.0%
GGTATCAGACAAAATTGTTT+AGG - tig0028698:51999-52018 Msa1439070:three_prime_UTR 30.0%
ATCAGACAAAATTGTTTAGG+AGG - tig0028698:52002-52021 Msa1439070:three_prime_UTR 30.0%
TCCATCTTGGTTATAAAGAT+TGG - tig0028698:52059-52078 Msa1439070:exon 30.0%
TCCAATCTTTATAACCAAGA+TGG + tig0028698:52063-52082 None:intergenic 30.0%
TTATGCAAGAGGAGATATTT+GGG - tig0028698:52180-52199 Msa1439070:CDS 30.0%
ATGGTACTCACAGTAATAAT+TGG + tig0028698:52215-52234 None:intergenic 30.0%
TATTACTGTGAGTACCATAA+AGG - tig0028698:52217-52236 Msa1439070:CDS 30.0%
ATTACTGTGAGTACCATAAA+GGG - tig0028698:52218-52237 Msa1439070:CDS 30.0%
TACTACATTTGATGAATGAG+AGG + tig0028698:52935-52954 None:intergenic 30.0%
GTAAGATATAGACATGATGA+TGG - tig0028698:52981-53000 Msa1439070:CDS 30.0%
ACTTGTTTGTACAACAATGT+TGG - tig0028698:53014-53033 Msa1439070:CDS 30.0%
!!! CTCAAAATTTTTTCCTTCTC+AGG + tig0028698:53198-53217 None:intergenic 30.0%
! CTGAGAAGGAAAAAATTTTG+AGG - tig0028698:53196-53215 Msa1439070:five_prime_UTR 30.0%
!! AAAATTTTGAGGGCCATTTT+TGG - tig0028698:53207-53226 Msa1439070:intron 30.0%
ACAAAAAAAAATGTAGGAGC+AGG + tig0028698:53364-53383 None:intergenic 30.0%
GGTATCAGACAAAATTGTTT+AGG - tig0028698:51999-52018 Msa1439070:three_prime_UTR 30.0%
ATCAGACAAAATTGTTTAGG+AGG - tig0028698:52002-52021 Msa1439070:three_prime_UTR 30.0%
TCCATCTTGGTTATAAAGAT+TGG - tig0028698:52059-52078 Msa1439070:exon 30.0%
TCCAATCTTTATAACCAAGA+TGG + tig0028698:52063-52082 None:intergenic 30.0%
TTATGCAAGAGGAGATATTT+GGG - tig0028698:52180-52199 Msa1439070:CDS 30.0%
ATGGTACTCACAGTAATAAT+TGG + tig0028698:52215-52234 None:intergenic 30.0%
TATTACTGTGAGTACCATAA+AGG - tig0028698:52217-52236 Msa1439070:CDS 30.0%
ATTACTGTGAGTACCATAAA+GGG - tig0028698:52218-52237 Msa1439070:CDS 30.0%
TACTACATTTGATGAATGAG+AGG + tig0028698:52935-52954 None:intergenic 30.0%
GTAAGATATAGACATGATGA+TGG - tig0028698:52981-53000 Msa1439070:CDS 30.0%
ACTTGTTTGTACAACAATGT+TGG - tig0028698:53014-53033 Msa1439070:CDS 30.0%
!!! CTCAAAATTTTTTCCTTCTC+AGG + tig0028698:53198-53217 None:intergenic 30.0%
! CTGAGAAGGAAAAAATTTTG+AGG - tig0028698:53196-53215 Msa1439070:five_prime_UTR 30.0%
!! AAAATTTTGAGGGCCATTTT+TGG - tig0028698:53207-53226 Msa1439070:intron 30.0%
ACAAAAAAAAATGTAGGAGC+AGG + tig0028698:53364-53383 None:intergenic 30.0%
GAAACTCTTGAATGAGGATA+AGG - tig0028698:51978-51997 Msa1439070:three_prime_UTR 35.0%
AAAATTGTTTAGGAGGTCAG+AGG - tig0028698:52009-52028 Msa1439070:three_prime_UTR 35.0%
AAATTGTTTAGGAGGTCAGA+GGG - tig0028698:52010-52029 Msa1439070:three_prime_UTR 35.0%
AAGAGGGAGAATTGATGTTA+TGG + tig0028698:52106-52125 None:intergenic 35.0%
GATTGCTCCAACTATCTTAT+TGG - tig0028698:52136-52155 Msa1439070:CDS 35.0%
GGAACATCCAATAAGATAGT+TGG + tig0028698:52146-52165 None:intergenic 35.0%
GTTATGCAAGAGGAGATATT+TGG - tig0028698:52179-52198 Msa1439070:CDS 35.0%
! TCTTTTCCTCACATTTTTGC+AGG - tig0028698:52288-52307 Msa1439070:CDS 35.0%
AAACAATGAGCAACTGAAGA+AGG - tig0028698:52381-52400 Msa1439070:intron 35.0%
TATGTGGACAAGATATCTTC+TGG - tig0028698:52406-52425 Msa1439070:intron 35.0%
ATCAGTAGACAGAAAAGGAA+AGG - tig0028698:52559-52578 Msa1439070:intron 35.0%
TCAAAGGTAGAAACATATGC+AGG - tig0028698:52682-52701 Msa1439070:intron 35.0%
CTATCAAAGAGAACTTTCCA+TGG + tig0028698:53102-53121 None:intergenic 35.0%
! TTTTCCTTCTCAGGTGTATA+TGG + tig0028698:53189-53208 None:intergenic 35.0%
CAGATAATTCTTGCTTTGCT+TGG - tig0028698:53243-53262 Msa1439070:intron 35.0%
TAATTCTTGCTTTGCTTGGA+TGG - tig0028698:53247-53266 Msa1439070:intron 35.0%
! GTCTAAATGATGATGTGCAA+GGG - tig0028698:53269-53288 Msa1439070:intron 35.0%
GAAACTCTTGAATGAGGATA+AGG - tig0028698:51978-51997 Msa1439070:three_prime_UTR 35.0%
AAAATTGTTTAGGAGGTCAG+AGG - tig0028698:52009-52028 Msa1439070:three_prime_UTR 35.0%
AAATTGTTTAGGAGGTCAGA+GGG - tig0028698:52010-52029 Msa1439070:three_prime_UTR 35.0%
AAGAGGGAGAATTGATGTTA+TGG + tig0028698:52106-52125 None:intergenic 35.0%
GATTGCTCCAACTATCTTAT+TGG - tig0028698:52136-52155 Msa1439070:CDS 35.0%
GGAACATCCAATAAGATAGT+TGG + tig0028698:52146-52165 None:intergenic 35.0%
GTTATGCAAGAGGAGATATT+TGG - tig0028698:52179-52198 Msa1439070:CDS 35.0%
! TCTTTTCCTCACATTTTTGC+AGG - tig0028698:52288-52307 Msa1439070:CDS 35.0%
AAACAATGAGCAACTGAAGA+AGG - tig0028698:52381-52400 Msa1439070:intron 35.0%
TATGTGGACAAGATATCTTC+TGG - tig0028698:52406-52425 Msa1439070:intron 35.0%
ATCAGTAGACAGAAAAGGAA+AGG - tig0028698:52559-52578 Msa1439070:intron 35.0%
TCAAAGGTAGAAACATATGC+AGG - tig0028698:52682-52701 Msa1439070:intron 35.0%
CTATCAAAGAGAACTTTCCA+TGG + tig0028698:53102-53121 None:intergenic 35.0%
! TTTTCCTTCTCAGGTGTATA+TGG + tig0028698:53189-53208 None:intergenic 35.0%
CAGATAATTCTTGCTTTGCT+TGG - tig0028698:53243-53262 Msa1439070:intron 35.0%
TAATTCTTGCTTTGCTTGGA+TGG - tig0028698:53247-53266 Msa1439070:intron 35.0%
! GTCTAAATGATGATGTGCAA+GGG - tig0028698:53269-53288 Msa1439070:intron 35.0%
ACTCGTGAAACTCTTGAATG+AGG - tig0028698:51972-51991 Msa1439070:three_prime_UTR 40.0%
GTGAGTTTGCATTTCCATCT+TGG - tig0028698:52046-52065 Msa1439070:three_prime_UTR 40.0%
TGCATAACCATAGCTTCTTG+TGG + tig0028698:52167-52186 None:intergenic 40.0%
AGAAGCTATGGTTATGCAAG+AGG - tig0028698:52169-52188 Msa1439070:CDS 40.0%
TGTCTACCTGCAAAAATGTG+AGG + tig0028698:52297-52316 None:intergenic 40.0%
AAAATCAAGGCCAAAGCCTT+TGG - tig0028698:52342-52361 Msa1439070:intron 40.0%
GCAACTGAAGAAGGATTATG+TGG - tig0028698:52390-52409 Msa1439070:intron 40.0%
TGGACAAGATATCTTCTGGA+GGG - tig0028698:52410-52429 Msa1439070:intron 40.0%
GTTGCATCAGTAGACAGAAA+AGG - tig0028698:52554-52573 Msa1439070:intron 40.0%
TTGTACAACAATGTTGGTGC+AGG - tig0028698:53020-53039 Msa1439070:CDS 40.0%
TTTCTCCAACTCTCTCCAAA+AGG + tig0028698:53063-53082 None:intergenic 40.0%
AGAGTTGGAGAAAGTGGAAT+GGG - tig0028698:53070-53089 Msa1439070:intron 40.0%
TTGATTCCGATCCATCCATA+AGG - tig0028698:53157-53176 Msa1439070:CDS 40.0%
!! TGTATATGGAGGGTACCTTA+TGG + tig0028698:53175-53194 None:intergenic 40.0%
!!! ATTTTGAGGGCCATTTTTGG+TGG - tig0028698:53210-53229 Msa1439070:intron 40.0%
! GGTCTAAATGATGATGTGCA+AGG - tig0028698:53268-53287 Msa1439070:intron 40.0%
TATCAGTCTCTGATCTCTGA+TGG - tig0028698:53303-53322 Msa1439070:intron 40.0%
ATCAGTCTCTGATCTCTGAT+GGG - tig0028698:53304-53323 Msa1439070:intron 40.0%
! GATGGGGTGTGTTTTTCTAT+AGG - tig0028698:53321-53340 Msa1439070:five_prime_UTR 40.0%
ACTCGTGAAACTCTTGAATG+AGG - tig0028698:51972-51991 Msa1439070:three_prime_UTR 40.0%
GTGAGTTTGCATTTCCATCT+TGG - tig0028698:52046-52065 Msa1439070:three_prime_UTR 40.0%
TGCATAACCATAGCTTCTTG+TGG + tig0028698:52167-52186 None:intergenic 40.0%
AGAAGCTATGGTTATGCAAG+AGG - tig0028698:52169-52188 Msa1439070:CDS 40.0%
TGTCTACCTGCAAAAATGTG+AGG + tig0028698:52297-52316 None:intergenic 40.0%
AAAATCAAGGCCAAAGCCTT+TGG - tig0028698:52342-52361 Msa1439070:intron 40.0%
GCAACTGAAGAAGGATTATG+TGG - tig0028698:52390-52409 Msa1439070:intron 40.0%
TGGACAAGATATCTTCTGGA+GGG - tig0028698:52410-52429 Msa1439070:intron 40.0%
GTTGCATCAGTAGACAGAAA+AGG - tig0028698:52554-52573 Msa1439070:intron 40.0%
TTGTACAACAATGTTGGTGC+AGG - tig0028698:53020-53039 Msa1439070:CDS 40.0%
TTTCTCCAACTCTCTCCAAA+AGG + tig0028698:53063-53082 None:intergenic 40.0%
AGAGTTGGAGAAAGTGGAAT+GGG - tig0028698:53070-53089 Msa1439070:intron 40.0%
TTGATTCCGATCCATCCATA+AGG - tig0028698:53157-53176 Msa1439070:CDS 40.0%
!! TGTATATGGAGGGTACCTTA+TGG + tig0028698:53175-53194 None:intergenic 40.0%
!!! ATTTTGAGGGCCATTTTTGG+TGG - tig0028698:53210-53229 Msa1439070:intron 40.0%
! GGTCTAAATGATGATGTGCA+AGG - tig0028698:53268-53287 Msa1439070:intron 40.0%
TATCAGTCTCTGATCTCTGA+TGG - tig0028698:53303-53322 Msa1439070:intron 40.0%
ATCAGTCTCTGATCTCTGAT+GGG - tig0028698:53304-53323 Msa1439070:intron 40.0%
! GATGGGGTGTGTTTTTCTAT+AGG - tig0028698:53321-53340 Msa1439070:five_prime_UTR 40.0%
ATTCTCCCTCTTTGTGCAGA+AGG - tig0028698:52114-52133 Msa1439070:CDS 45.0%
GCAATCCTTCTGCACAAAGA+GGG + tig0028698:52122-52141 None:intergenic 45.0%
AGCAATCCTTCTGCACAAAG+AGG + tig0028698:52123-52142 None:intergenic 45.0%
GGATGTTCCACAAGAAGCTA+TGG - tig0028698:52157-52176 Msa1439070:CDS 45.0%
AGATATGCAGCCAAAGGCTT+TGG + tig0028698:52355-52374 None:intergenic 45.0%
GTGAAGAGATATGCAGCCAA+AGG + tig0028698:52361-52380 None:intergenic 45.0%
GTGGACAAGATATCTTCTGG+AGG - tig0028698:52409-52428 Msa1439070:intron 45.0%
GTCGAGTGACTGTGTTTCAT+AGG + tig0028698:52789-52808 None:intergenic 45.0%
TGAAACACAGTCACTCGACA+CGG - tig0028698:52790-52809 Msa1439070:intron 45.0%
!! GTTTGCCTTTTGGAGAGAGT+TGG - tig0028698:53055-53074 Msa1439070:intron 45.0%
TTGGAGAGAGTTGGAGAAAG+TGG - tig0028698:53064-53083 Msa1439070:intron 45.0%
GAGAGTTGGAGAAAGTGGAA+TGG - tig0028698:53069-53088 Msa1439070:intron 45.0%
! AGGGTACCTTATGGATGGAT+CGG + tig0028698:53166-53185 None:intergenic 45.0%
!! TATGGAGGGTACCTTATGGA+TGG + tig0028698:53171-53190 None:intergenic 45.0%
CCTTCTCAGGTGTATATGGA+GGG + tig0028698:53185-53204 None:intergenic 45.0%
TCCTTCTCAGGTGTATATGG+AGG + tig0028698:53186-53205 None:intergenic 45.0%
TCAGTCTCTGATCTCTGATG+GGG - tig0028698:53305-53324 Msa1439070:intron 45.0%
TTTGTAAGGTTGAGGACCAG+AGG - tig0028698:53379-53398 Msa1439070:five_prime_UTR 45.0%
ATTCTCCCTCTTTGTGCAGA+AGG - tig0028698:52114-52133 Msa1439070:CDS 45.0%
GCAATCCTTCTGCACAAAGA+GGG + tig0028698:52122-52141 None:intergenic 45.0%
AGCAATCCTTCTGCACAAAG+AGG + tig0028698:52123-52142 None:intergenic 45.0%
GGATGTTCCACAAGAAGCTA+TGG - tig0028698:52157-52176 Msa1439070:CDS 45.0%
AGATATGCAGCCAAAGGCTT+TGG + tig0028698:52355-52374 None:intergenic 45.0%
GTGAAGAGATATGCAGCCAA+AGG + tig0028698:52361-52380 None:intergenic 45.0%
GTGGACAAGATATCTTCTGG+AGG - tig0028698:52409-52428 Msa1439070:intron 45.0%
GTCGAGTGACTGTGTTTCAT+AGG + tig0028698:52789-52808 None:intergenic 45.0%
TGAAACACAGTCACTCGACA+CGG - tig0028698:52790-52809 Msa1439070:intron 45.0%
!! GTTTGCCTTTTGGAGAGAGT+TGG - tig0028698:53055-53074 Msa1439070:intron 45.0%
TTGGAGAGAGTTGGAGAAAG+TGG - tig0028698:53064-53083 Msa1439070:intron 45.0%
GAGAGTTGGAGAAAGTGGAA+TGG - tig0028698:53069-53088 Msa1439070:intron 45.0%
! AGGGTACCTTATGGATGGAT+CGG + tig0028698:53166-53185 None:intergenic 45.0%
!! TATGGAGGGTACCTTATGGA+TGG + tig0028698:53171-53190 None:intergenic 45.0%
CCTTCTCAGGTGTATATGGA+GGG + tig0028698:53185-53204 None:intergenic 45.0%
TCCTTCTCAGGTGTATATGG+AGG + tig0028698:53186-53205 None:intergenic 45.0%
TCAGTCTCTGATCTCTGATG+GGG - tig0028698:53305-53324 Msa1439070:intron 45.0%
TTTGTAAGGTTGAGGACCAG+AGG - tig0028698:53379-53398 Msa1439070:five_prime_UTR 45.0%
! CACGAGTCGTGCTATTGAGT+TGG + tig0028698:51959-51978 None:intergenic 50.0%
!! GCAACTCGTGGTTTGCCTTT+TGG - tig0028698:53045-53064 Msa1439070:intron 50.0%
!! AGTGGAATGGGTTGCTACCA+TGG - tig0028698:53082-53101 Msa1439070:intron 50.0%
CCCTCCATATACACCTGAGA+AGG - tig0028698:53182-53201 Msa1439070:five_prime_UTR 50.0%
ATTCACAGTGATTGGGCCTC+TGG + tig0028698:53398-53417 None:intergenic 50.0%
! CACGAGTCGTGCTATTGAGT+TGG + tig0028698:51959-51978 None:intergenic 50.0%
!! GCAACTCGTGGTTTGCCTTT+TGG - tig0028698:53045-53064 Msa1439070:intron 50.0%
!! AGTGGAATGGGTTGCTACCA+TGG - tig0028698:53082-53101 Msa1439070:intron 50.0%
CCCTCCATATACACCTGAGA+AGG - tig0028698:53182-53201 Msa1439070:five_prime_UTR 50.0%
ATTCACAGTGATTGGGCCTC+TGG + tig0028698:53398-53417 None:intergenic 50.0%
TTGGTGCAGGTTGCAACTCG+TGG - tig0028698:53033-53052 Msa1439070:intron 55.0%
TTGGTGCAGGTTGCAACTCG+TGG - tig0028698:53033-53052 Msa1439070:intron 55.0%
Chromosome Type Strat End Strand Name
tig0028698 gene 51921 53434 51921 ID=Msa1439070;Name=Msa1439070
tig0028698 mRNA 51921 53434 51921 ID=Msa1439070-mRNA-1;Parent=Msa1439070;Name=Msa1439070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=168|1|1|1|0.66|0.75|4|156|144
tig0028698 exon 51921 52313 51921 ID=Msa1439070-mRNA-1:exon:11583;Parent=Msa1439070-mRNA-1
tig0028698 exon 52896 53045 52896 ID=Msa1439070-mRNA-1:exon:11582;Parent=Msa1439070-mRNA-1
tig0028698 exon 53132 53222 53132 ID=Msa1439070-mRNA-1:exon:11581;Parent=Msa1439070-mRNA-1
tig0028698 exon 53310 53434 53310 ID=Msa1439070-mRNA-1:exon:11580;Parent=Msa1439070-mRNA-1
tig0028698 five_prime_UTR 53310 53434 53310 ID=Msa1439070-mRNA-1:five_prime_utr;Parent=Msa1439070-mRNA-1
tig0028698 five_prime_UTR 53180 53222 53180 ID=Msa1439070-mRNA-1:five_prime_utr;Parent=Msa1439070-mRNA-1
tig0028698 CDS 53132 53179 53132 ID=Msa1439070-mRNA-1:cds;Parent=Msa1439070-mRNA-1
tig0028698 CDS 52896 53045 52896 ID=Msa1439070-mRNA-1:cds;Parent=Msa1439070-mRNA-1
tig0028698 CDS 52077 52313 52077 ID=Msa1439070-mRNA-1:cds;Parent=Msa1439070-mRNA-1
tig0028698 three_prime_UTR 51921 52076 51921 ID=Msa1439070-mRNA-1:three_prime_utr;Parent=Msa1439070-mRNA-1
Gene Sequence

>Msa1439070

ATGGTTATGCAAGAGGAGATATTTGGGCCAATTTTGCCAATTATTACTGTAGACAACATTGAAGATAGCTTTAGTATAATAAAATCAAGGCCAAAGCCTTTGGCTGCATATCTCTTCACAAACAATGAGCAACTGAAGAAGGATTATGTGGACAAGATATCTTCTGGAGGGATGCTCATCAACGACGCTGTCATACATGTTGCAACTCGTGGTTTGCCTTTTGGAGAGAGTTGGAGAAAGTGGAATGGGTTGCTACCATGGAAAGTTCTCTTTGATAGTTTCAGCCATAAGAAATCAGTTTTATATAAAACTTTTGATTCCGATCCATCCATAAGGTACCCTCCATATACACCTGAGAAGGAAAAAATTTTGAGGGCCATTTTTGGTGGCAATATTTTTCAGATAATTCTTGCTTTGCTTGGATGGTCTAAATGA

Protein sequence

>Msa1439070

MVMQEEIFGPILPIITVDNIEDSFSIIKSRPKPLAAYLFTNNEQLKKDYVDKISSGGMLINDAVIHVATRGLPFGESWRKWNGLLPWKVLFDSFSHKKSVLYKTFDSDPSIRYPPYTPEKEKILRAIFGGNIFQIILALLGWSK*