AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367490 MtrunA17_Chr3g0102841 94.393 214 8 1 1 210 1 214 2.74e-147 408
Msa0367490 MtrunA17_Chr1g0179231 30.968 155 80 5 67 200 67 215 1.27e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367490 AT4G26555.1 60.386 207 64 4 7 201 7 207 7.81e-78 232
Msa0367490 AT4G26555.2 70.186 161 43 2 46 201 1 161 1.33e-74 223
Msa0367490 AT4G26555.3 52.500 160 58 4 7 154 7 160 1.61e-44 147

Find 67 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCCTTCTATTTCTTTA+TGG 0.076028 3_1:+63171557 None:intergenic
AAAATCATTGTTTCCTTCTA+TGG 0.167625 3_1:+63171587 None:intergenic
CAGCATACATCCTCAGATTT+TGG 0.203686 3_1:-63171462 Msa0367490:three_prime_UTR
TAATACTCCCATTCTCAATT+TGG 0.235456 3_1:+63174412 None:intergenic
TTGTTTAAAACAGATGATAC+TGG 0.286671 3_1:-63172388 Msa0367490:intron
TTTGTCCGAAACATTGTAAT+TGG 0.287441 3_1:+63171338 None:intergenic
TGAATGAACCAGAAGTTATA+AGG 0.309190 3_1:-63174067 Msa0367490:intron
TACATAGTCTTGATCTTCTA+AGG 0.333995 3_1:-63171610 Msa0367490:three_prime_UTR
ATGTTATTCTTCTCCTGCTT+TGG 0.339105 3_1:-63174108 Msa0367490:CDS
AGAAGCACACAGTGGAGATT+TGG 0.354056 3_1:-63173303 Msa0367490:CDS
AGGTTGATTGTTCAGTTTAT+CGG 0.354737 3_1:-63174146 Msa0367490:CDS
TTCTCATGCACAAGAGCCTT+TGG 0.363353 3_1:-63171747 Msa0367490:CDS
GATTACTTTCTCCATTGAAT+TGG 0.366396 3_1:+63173077 None:intergenic
AAAATAACGTGGTGCACATT+TGG 0.367542 3_1:-63171428 Msa0367490:three_prime_UTR
AGTGCTAGACTAACCTCTTC+AGG 0.368074 3_1:+63172016 None:intergenic
CAGACAAACCTTATAACTTC+TGG 0.374148 3_1:+63174059 None:intergenic
AAATCTCCACTGTGTGCTTC+TGG 0.380339 3_1:+63173305 None:intergenic
CCTTGCCAATTACAATGTTT+CGG 0.386306 3_1:-63171343 Msa0367490:three_prime_UTR
GTGTTAGATAGAATGGAAAT+TGG 0.386944 3_1:-63171522 Msa0367490:intron
TCATCCAGAGGAAGTATAAC+AGG 0.388887 3_1:+63173055 None:intergenic
TGCTTTGGCTGCACCAATCA+TGG 0.393966 3_1:-63174093 Msa0367490:CDS
GGTTCATTCATGTCCATGAT+TGG 0.398655 3_1:+63174080 None:intergenic
AGACTAACCTCTTCAGGTAT+TGG 0.406636 3_1:+63172022 None:intergenic
CAGAGCTGTGTTAGATAGAA+TGG 0.412111 3_1:-63171529 Msa0367490:three_prime_UTR
TTGTACCGTTTACGAAATCT+TGG 0.413700 3_1:-63171368 Msa0367490:three_prime_UTR
TAATCCTGTTATACTTCCTC+TGG 0.433615 3_1:-63173059 Msa0367490:CDS
GCTAGTGGAGTGAGAATTCA+AGG 0.450122 3_1:-63173902 Msa0367490:intron
ACTTCCTTCCAAATTGAGAA+TGG 0.457588 3_1:-63174420 Msa0367490:exon
GGGTTAAAGCAGGTCTTGAC+TGG 0.462835 3_1:-63172366 Msa0367490:CDS
CTTCCTTCCAAATTGAGAAT+GGG 0.464378 3_1:-63174419 Msa0367490:exon
AAAGAAATAGAAGGGTGATC+AGG 0.466408 3_1:-63171553 Msa0367490:three_prime_UTR
TGATCTTCTAAGGCCATAGA+AGG 0.477037 3_1:-63171600 Msa0367490:three_prime_UTR
ATGATTGGTGCAGCCAAAGC+AGG 0.489354 3_1:+63174095 None:intergenic
AGGCACCAAGATTTCGTAAA+CGG 0.494130 3_1:+63171363 None:intergenic
TGTGTATGCAGGCGTGCAAA+TGG 0.496678 3_1:-63173269 Msa0367490:CDS
TGTTTAAAACAGATGATACT+GGG 0.504041 3_1:-63172387 Msa0367490:intron
TTGAATTCAATTGTGTATGC+AGG 0.514249 3_1:-63173280 Msa0367490:CDS
ACTTCCTCTGGATGAGGACC+AGG 0.515288 3_1:-63173047 Msa0367490:intron
GCAGAGACGGAAGCAGCATA+TGG 0.516780 3_1:+63174371 None:intergenic
TAATTAAATTCAGATTGTTG+TGG 0.529196 3_1:+63171689 None:intergenic
GAGAAAGAAGGCTGCGTCGA+GGG 0.529313 3_1:+63171765 None:intergenic
CTTGAAGCCAATACCTGAAG+AGG 0.536259 3_1:-63172029 Msa0367490:intron
AGTACTGTAGACCAATTCAA+TGG 0.537776 3_1:-63173088 Msa0367490:CDS
GTCTTGACTGGCATGAGAGT+TGG 0.540633 3_1:-63172354 Msa0367490:CDS
GCTCTTGTGCATGAGAAAGA+AGG 0.541224 3_1:+63171753 None:intergenic
CTAATTGCAGCCAAAATCTG+AGG 0.543159 3_1:+63171452 None:intergenic
TTGACTGGCATGAGAGTTGG+TGG 0.545256 3_1:-63172351 Msa0367490:intron
CTTCCGTCTCTGCTTCTCCA+AGG 0.555396 3_1:-63174361 Msa0367490:intron
TGTTATACTTCCTCTGGATG+AGG 0.558694 3_1:-63173053 Msa0367490:CDS
ACTCCCATTCTCAATTTGGA+AGG 0.560845 3_1:+63174416 None:intergenic
GATGATACTGGGGTTAAAGC+AGG 0.562802 3_1:-63172376 Msa0367490:CDS
GTGGTGCACATTTGGTATCA+TGG 0.562972 3_1:-63171420 Msa0367490:three_prime_UTR
GCATTGATTCCACCTTCTGT+AGG 0.568687 3_1:-63172067 Msa0367490:CDS
TGGAAGGAAGTTCACAACTC+AGG 0.571522 3_1:+63174432 None:intergenic
GAGAAGAATAACATAATATG+TGG 0.575707 3_1:+63174117 None:intergenic
GAGACGGAAGCAGCATATGG+TGG 0.576235 3_1:+63174374 None:intergenic
TCTACATATCCTACAGAAGG+TGG 0.586098 3_1:+63172058 None:intergenic
CCGAAACATTGTAATTGGCA+AGG 0.586591 3_1:+63171343 None:intergenic
AGGACTTTGAAGCTAGCTAG+TGG 0.614785 3_1:-63173917 Msa0367490:CDS
TCGTCTACATATCCTACAGA+AGG 0.627789 3_1:+63172055 None:intergenic
ATACCTTGGAGAAGCAGAGA+CGG 0.631916 3_1:+63174358 None:intergenic
TGAGAAAGAAGGCTGCGTCG+AGG 0.645568 3_1:+63171764 None:intergenic
AGTTGAACTTCAAATACCAA+AGG 0.649057 3_1:+63171731 None:intergenic
GTTTAAAACAGATGATACTG+GGG 0.650883 3_1:-63172386 Msa0367490:intron
GAAGGACCAGAAGCACACAG+TGG 0.675989 3_1:-63173311 Msa0367490:CDS
CTAACCTGGTCCTCATCCAG+AGG 0.693869 3_1:+63173043 None:intergenic
TCATGAATCCAGGTGCACTG+AGG 0.729193 3_1:-63174228 Msa0367490:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACATGATATTGTTTTT+AGG + chr3_1:63171419-63171438 None:intergenic 15.0%
!! TAAGGTTTAAACTTTAAATT+GGG + chr3_1:63172262-63172281 None:intergenic 15.0%
!! ATAAGGTTTAAACTTTAAAT+TGG + chr3_1:63172263-63172282 None:intergenic 15.0%
!!! CTTAATTTCTTTTAATCAAA+AGG + chr3_1:63172299-63172318 None:intergenic 15.0%
!! TTCATGATATGAATTAATAA+TGG - chr3_1:63172477-63172496 Msa0367490:intron 15.0%
!! TACGTTTAAAAAAAAATTGA+CGG + chr3_1:63173737-63173756 None:intergenic 15.0%
!! AAGGATAAATGAAATTCATA+AGG + chr3_1:63172280-63172299 None:intergenic 20.0%
!! GGAAAATGATATTATAAACA+TGG - chr3_1:63172813-63172832 Msa0367490:intron 20.0%
!! TATAAGAAAGAAAAGAACAA+TGG + chr3_1:63173108-63173127 None:intergenic 20.0%
!!! TGATTAATAGTCAAATTTTG+TGG + chr3_1:63173205-63173224 None:intergenic 20.0%
!! TATATAAGAAAAATCATGAG+AGG + chr3_1:63173423-63173442 None:intergenic 20.0%
!! TAAAATGTTATGTTAGTAGT+TGG - chr3_1:63173769-63173788 Msa0367490:intron 20.0%
!! TTAATTTAAACATCCAAACA+AGG + chr3_1:63173822-63173841 None:intergenic 20.0%
!! TAATTAAATTCAGATTGTTG+TGG + chr3_1:63174017-63174036 None:intergenic 20.0%
!!! TTTTATTTTCTTCTGTCAAT+TGG - chr3_1:63174044-63174063 Msa0367490:intron 20.0%
!!! TTTTTCCATAAAGAAATAGA+AGG - chr3_1:63174141-63174160 Msa0367490:CDS 20.0%
!!! TTTTCCATAAAGAAATAGAA+GGG - chr3_1:63174142-63174161 Msa0367490:CDS 20.0%
! TAGAATGAAATGAATTAGAG+AGG + chr3_1:63171380-63171399 None:intergenic 25.0%
! CGAAAAAATATTGTTCAAGA+AGG - chr3_1:63171537-63171556 Msa0367490:three_prime_UTR 25.0%
! GAGAAGAATAACATAATATG+TGG + chr3_1:63171589-63171608 None:intergenic 25.0%
!!! TATTTTTATGTGAAGCATCT+AGG - chr3_1:63171766-63171785 Msa0367490:CDS 25.0%
! TGCAAGTATATCATATATCA+AGG + chr3_1:63172020-63172039 None:intergenic 25.0%
! CCACAATATAAAAGTTTAAG+AGG + chr3_1:63172101-63172120 None:intergenic 25.0%
!! CCTCTTAAACTTTTATATTG+TGG - chr3_1:63172098-63172117 Msa0367490:intron 25.0%
! CAAATAGAAATGCAAATTCT+TGG - chr3_1:63172224-63172243 Msa0367490:intron 25.0%
! TTCAAATTAGTTGTTACTGA+AGG - chr3_1:63172368-63172387 Msa0367490:CDS 25.0%
! TTGAAAGAAATAAACTAACC+TGG + chr3_1:63172677-63172696 None:intergenic 25.0%
!! AGTTTATTTCTTTCAACTTG+TGG - chr3_1:63172681-63172700 Msa0367490:intron 25.0%
!! GTTTATTTCTTTCAACTTGT+GGG - chr3_1:63172682-63172701 Msa0367490:intron 25.0%
!! CTGATGATGTTTCTTATATA+TGG - chr3_1:63172744-63172763 Msa0367490:intron 25.0%
! ATGAAGGAATCTATCTAATA+AGG + chr3_1:63172999-63173018 None:intergenic 25.0%
! CTTATATTCTGCAAATTTGA+AGG - chr3_1:63173122-63173141 Msa0367490:intron 25.0%
! TATTGTTTCAAATCTAGCAA+AGG + chr3_1:63173167-63173186 None:intergenic 25.0%
!!! CTTGAGTTGAAGAATATAAA+GGG + chr3_1:63173248-63173267 None:intergenic 25.0%
!!! ACTTGAGTTGAAGAATATAA+AGG + chr3_1:63173249-63173268 None:intergenic 25.0%
!! TTGTTTAAAACAGATGATAC+TGG - chr3_1:63173315-63173334 Msa0367490:CDS 25.0%
!! TGTTTAAAACAGATGATACT+GGG - chr3_1:63173316-63173335 Msa0367490:CDS 25.0%
! ATATACATGTATGCCAAATT+AGG + chr3_1:63173489-63173508 None:intergenic 25.0%
!!! ATGTATTGAGGACTTTTTTT+TGG - chr3_1:63173853-63173872 Msa0367490:intron 25.0%
!! TTTTTGTGTTTAATGCAGTT+TGG - chr3_1:63173915-63173934 Msa0367490:CDS 25.0%
! AAAATCATTGTTTCCTTCTA+TGG + chr3_1:63174119-63174138 None:intergenic 25.0%
!! TAGTTTTTGCAGGATTATAA+CGG + chr3_1:63174313-63174332 None:intergenic 25.0%
TAATACTCCCATTCTCAATT+TGG + chr3_1:63171294-63171313 None:intergenic 30.0%
AGAGGAAACAATATATACCT+TGG + chr3_1:63171362-63171381 None:intergenic 30.0%
! AGGTTGATTGTTCAGTTTAT+CGG - chr3_1:63171557-63171576 Msa0367490:three_prime_UTR 30.0%
TGAATGAACCAGAAGTTATA+AGG - chr3_1:63171636-63171655 Msa0367490:intron 30.0%
CAGTTTAAACACACACAATA+AGG + chr3_1:63171976-63171995 None:intergenic 30.0%
TATTGTGTGTGTTTAAACTG+TGG - chr3_1:63171976-63171995 Msa0367490:intron 30.0%
!! TAGAACATAGTTCTGAATTG+CGG + chr3_1:63172143-63172162 None:intergenic 30.0%
TTGAATTCAATTGTGTATGC+AGG - chr3_1:63172423-63172442 Msa0367490:intron 30.0%
!!! CAAATGGATACTTTGTTTTC+AGG - chr3_1:63172450-63172469 Msa0367490:intron 30.0%
GATTACTTTCTCCATTGAAT+TGG + chr3_1:63172629-63172648 None:intergenic 30.0%
TGCATATCGCAATTTATAAG+TGG - chr3_1:63172896-63172915 Msa0367490:intron 30.0%
GCATATCGCAATTTATAAGT+GGG - chr3_1:63172897-63172916 Msa0367490:intron 30.0%
AAGTATAGCAATGTCTATGA+AGG + chr3_1:63173015-63173034 None:intergenic 30.0%
! TAGACATTGCTATACTTTTC+AGG - chr3_1:63173018-63173037 Msa0367490:intron 30.0%
!! CAGATTTGCTATTACAAATC+TGG - chr3_1:63173063-63173082 Msa0367490:CDS 30.0%
! GTTTAAAACAGATGATACTG+GGG - chr3_1:63173317-63173336 Msa0367490:intron 30.0%
AAAATCATGAGAGGAAATAC+TGG + chr3_1:63173414-63173433 None:intergenic 30.0%
!! TTTGAAATGACTCGTCATTT+TGG - chr3_1:63173457-63173476 Msa0367490:intron 30.0%
!! ATTTTGGTCCAAACCTAATT+TGG - chr3_1:63173473-63173492 Msa0367490:intron 30.0%
CATACATGTATATGACAATC+TGG - chr3_1:63173496-63173515 Msa0367490:intron 30.0%
!!! TGACTGTTTTTTTTTGTGTG+TGG - chr3_1:63173553-63173572 Msa0367490:intron 30.0%
! TGTATCTTTTGATGTCATTG+TGG - chr3_1:63173580-63173599 Msa0367490:intron 30.0%
ACTTGGATACAATCATACAA+AGG - chr3_1:63173707-63173726 Msa0367490:intron 30.0%
AGTTGAACTTCAAATACCAA+AGG + chr3_1:63173975-63173994 None:intergenic 30.0%
! TACATAGTCTTGATCTTCTA+AGG - chr3_1:63174093-63174112 Msa0367490:CDS 30.0%
! ATCACCCTTCTATTTCTTTA+TGG + chr3_1:63174149-63174168 None:intergenic 30.0%
GTGTTAGATAGAATGGAAAT+TGG - chr3_1:63174181-63174200 Msa0367490:CDS 30.0%
TGGAAATTGGAAAATGTTTG+AGG - chr3_1:63174194-63174213 Msa0367490:CDS 30.0%
AATTGGAAAATGTTTGAGGA+AGG - chr3_1:63174198-63174217 Msa0367490:CDS 30.0%
CTGCAATTAGAAAAATAACG+TGG - chr3_1:63174264-63174283 Msa0367490:intron 30.0%
TTTGTCCGAAACATTGTAAT+TGG + chr3_1:63174368-63174387 None:intergenic 30.0%
ACTTCCTTCCAAATTGAGAA+TGG - chr3_1:63171283-63171302 Msa0367490:three_prime_UTR 35.0%
CTTCCTTCCAAATTGAGAAT+GGG - chr3_1:63171284-63171303 Msa0367490:three_prime_UTR 35.0%
CTTAAAACTCTCATGAATCC+AGG - chr3_1:63171465-63171484 Msa0367490:three_prime_UTR 35.0%
ATGTTATTCTTCTCCTGCTT+TGG - chr3_1:63171595-63171614 Msa0367490:three_prime_UTR 35.0%
CAGACAAACCTTATAACTTC+TGG + chr3_1:63171647-63171666 None:intergenic 35.0%
AACCTTGAGATCGCATTTAT+TGG - chr3_1:63171905-63171924 Msa0367490:intron 35.0%
ATCCAATAAATGCGATCTCA+AGG + chr3_1:63171910-63171929 None:intergenic 35.0%
!!! GTCAGTCATTTTTGATGCAA+AGG - chr3_1:63171934-63171953 Msa0367490:intron 35.0%
GTGTGTTTAAACTGTGGTTA+CGG - chr3_1:63171982-63172001 Msa0367490:intron 35.0%
AACCACAATTGCAACCAAAT+TGG + chr3_1:63172060-63172079 None:intergenic 35.0%
TTGTGGTTACAATGTTGTTG+CGG - chr3_1:63172072-63172091 Msa0367490:CDS 35.0%
TTAGTTGTTACTGAAGGAGA+AGG - chr3_1:63172374-63172393 Msa0367490:CDS 35.0%
AGTACTGTAGACCAATTCAA+TGG - chr3_1:63172615-63172634 Msa0367490:intron 35.0%
TAATCCTGTTATACTTCCTC+TGG - chr3_1:63172644-63172663 Msa0367490:intron 35.0%
!! ATGGTTCTAAATTGCAGTTG+CGG - chr3_1:63172832-63172851 Msa0367490:intron 35.0%
!! GTGGGTTGATTATTGTAACA+TGG - chr3_1:63172915-63172934 Msa0367490:intron 35.0%
AAGCATCTAATTGTAGTCAC+TGG - chr3_1:63172973-63172992 Msa0367490:intron 35.0%
ACTCAAGTTACCATAAACTG+AGG - chr3_1:63173261-63173280 Msa0367490:CDS 35.0%
CAGATTATCTCCTCAGTTTA+TGG + chr3_1:63173274-63173293 None:intergenic 35.0%
CATGTATGCCAAATTAGGTT+TGG + chr3_1:63173484-63173503 None:intergenic 35.0%
TCCACTAGTCCTGTATAATT+TGG - chr3_1:63173527-63173546 Msa0367490:intron 35.0%
ACCAAATTATACAGGACTAG+TGG + chr3_1:63173531-63173550 None:intergenic 35.0%
CAGTCATGACCAAATTATAC+AGG + chr3_1:63173539-63173558 None:intergenic 35.0%
AAAGAAATAGAAGGGTGATC+AGG - chr3_1:63174150-63174169 Msa0367490:CDS 35.0%
AAAATAACGTGGTGCACATT+TGG - chr3_1:63174275-63174294 Msa0367490:intron 35.0%
TTGTACCGTTTACGAAATCT+TGG - chr3_1:63174335-63174354 Msa0367490:intron 35.0%
CCTTGCCAATTACAATGTTT+CGG - chr3_1:63174360-63174379 Msa0367490:intron 35.0%
ACTCCCATTCTCAATTTGGA+AGG + chr3_1:63171290-63171309 None:intergenic 40.0%
GGTTCATTCATGTCCATGAT+TGG + chr3_1:63171626-63171645 None:intergenic 40.0%
TATCACAAATCACAGTGCAC+TGG + chr3_1:63171736-63171755 None:intergenic 40.0%
! TTGACTCGAGCACAATACAA+GGG + chr3_1:63172548-63172567 None:intergenic 40.0%
!! ATTGACTCGAGCACAATACA+AGG + chr3_1:63172549-63172568 None:intergenic 40.0%
ATAACTGTCCTAACGTTGCT+TGG - chr3_1:63172567-63172586 Msa0367490:intron 40.0%
GAATGAAACCAAGCAACGTT+AGG + chr3_1:63172578-63172597 None:intergenic 40.0%
! TCATCCAGAGGAAGTATAAC+AGG + chr3_1:63172651-63172670 None:intergenic 40.0%
TGTTATACTTCCTCTGGATG+AGG - chr3_1:63172650-63172669 Msa0367490:intron 40.0%
CAACACATTTCAGAGTTCTC+TGG + chr3_1:63172710-63172729 None:intergenic 40.0%
AGTTGCGGTTACACTACATT+GGG - chr3_1:63172847-63172866 Msa0367490:intron 40.0%
!! AGAGGAAATACTGGTTTGTC+AGG + chr3_1:63173405-63173424 None:intergenic 40.0%
TCTACATATCCTACAGAAGG+TGG + chr3_1:63173648-63173667 None:intergenic 40.0%
TCGTCTACATATCCTACAGA+AGG + chr3_1:63173651-63173670 None:intergenic 40.0%
AGACTAACCTCTTCAGGTAT+TGG + chr3_1:63173684-63173703 None:intergenic 40.0%
ACTTTACGCTCAACCTTGTT+TGG - chr3_1:63173806-63173825 Msa0367490:intron 40.0%
ACCACTTCAGCTATGTATTG+AGG - chr3_1:63173841-63173860 Msa0367490:intron 40.0%
TCCTCAATACATAGCTGAAG+TGG + chr3_1:63173845-63173864 None:intergenic 40.0%
!! TGATCTTCTAAGGCCATAGA+AGG - chr3_1:63174103-63174122 Msa0367490:CDS 40.0%
CAGAGCTGTGTTAGATAGAA+TGG - chr3_1:63174174-63174193 Msa0367490:CDS 40.0%
TGGAAAATGTTTGAGGAAGG+TGG - chr3_1:63174201-63174220 Msa0367490:CDS 40.0%
! CAGCATACATCCTCAGATTT+TGG - chr3_1:63174241-63174260 Msa0367490:intron 40.0%
CTAATTGCAGCCAAAATCTG+AGG + chr3_1:63174254-63174273 None:intergenic 40.0%
! CGGTACAATGTAGTTTTTGC+AGG + chr3_1:63174323-63174342 None:intergenic 40.0%
AGGCACCAAGATTTCGTAAA+CGG + chr3_1:63174343-63174362 None:intergenic 40.0%
CCGAAACATTGTAATTGGCA+AGG + chr3_1:63174363-63174382 None:intergenic 40.0%
TGGAAGGAAGTTCACAACTC+AGG + chr3_1:63171274-63171293 None:intergenic 45.0%
ATACCTTGGAGAAGCAGAGA+CGG + chr3_1:63171348-63171367 None:intergenic 45.0%
!! AGGACTTTGAAGCTAGCTAG+TGG - chr3_1:63171786-63171805 Msa0367490:intron 45.0%
GCTAGTGGAGTGAGAATTCA+AGG - chr3_1:63171801-63171820 Msa0367490:intron 45.0%
CTTGCAAAACGCAGCATATG+TGG - chr3_1:63172034-63172053 Msa0367490:CDS 45.0%
GGCCAATTTGGTTGCAATTG+TGG - chr3_1:63172055-63172074 Msa0367490:CDS 45.0%
AAATCTCCACTGTGTGCTTC+TGG + chr3_1:63172401-63172420 None:intergenic 45.0%
! AGAAGCACACAGTGGAGATT+TGG - chr3_1:63172400-63172419 Msa0367490:intron 45.0%
CAGTTGCGGTTACACTACAT+TGG - chr3_1:63172846-63172865 Msa0367490:intron 45.0%
GTTGCGGTTACACTACATTG+GGG - chr3_1:63172848-63172867 Msa0367490:intron 45.0%
CACTACATTGGGGTTAGATG+CGG - chr3_1:63172858-63172877 Msa0367490:intron 45.0%
GATATGCAACAACAACCGCA+AGG + chr3_1:63172884-63172903 None:intergenic 45.0%
AAGGGCGACTGAAGAATACT+AGG + chr3_1:63173230-63173249 None:intergenic 45.0%
GATGATACTGGGGTTAAAGC+AGG - chr3_1:63173327-63173346 Msa0367490:intron 45.0%
GATGTCATTGTGGTCACTCT+TGG - chr3_1:63173590-63173609 Msa0367490:intron 45.0%
TCACTCTTGGCTTCACTTGT+AGG - chr3_1:63173603-63173622 Msa0367490:intron 45.0%
!! GCATTGATTCCACCTTCTGT+AGG - chr3_1:63173636-63173655 Msa0367490:intron 45.0%
CTTGAAGCCAATACCTGAAG+AGG - chr3_1:63173674-63173693 Msa0367490:intron 45.0%
AGTGCTAGACTAACCTCTTC+AGG + chr3_1:63173690-63173709 None:intergenic 45.0%
!! GAAGAGGTTAGTCTAGCACT+TGG - chr3_1:63173690-63173709 Msa0367490:intron 45.0%
GCTCTTGTGCATGAGAAAGA+AGG + chr3_1:63173953-63173972 None:intergenic 45.0%
TTCTCATGCACAAGAGCCTT+TGG - chr3_1:63173956-63173975 Msa0367490:intron 45.0%
GTGGTGCACATTTGGTATCA+TGG - chr3_1:63174283-63174302 Msa0367490:intron 45.0%
!!! AAATTTTTTTATTAAGTAAT+TGG - chr3_1:63172792-63172811 Msa0367490:intron 5.0%
TCATGAATCCAGGTGCACTG+AGG - chr3_1:63171475-63171494 Msa0367490:intron 50.0%
ATGATTGGTGCAGCCAAAGC+AGG + chr3_1:63171611-63171630 None:intergenic 50.0%
TGCTTTGGCTGCACCAATCA+TGG - chr3_1:63171610-63171629 Msa0367490:three_prime_UTR 50.0%
CGCAGCATATGTGGCCAATT+TGG - chr3_1:63172043-63172062 Msa0367490:CDS 50.0%
TGTGTATGCAGGCGTGCAAA+TGG - chr3_1:63172434-63172453 Msa0367490:intron 50.0%
GGGTTAAAGCAGGTCTTGAC+TGG - chr3_1:63173337-63173356 Msa0367490:intron 50.0%
GTCTTGACTGGCATGAGAGT+TGG - chr3_1:63173349-63173368 Msa0367490:intron 50.0%
TTGACTGGCATGAGAGTTGG+TGG - chr3_1:63173352-63173371 Msa0367490:intron 50.0%
GAGACGGAAGCAGCATATGG+TGG + chr3_1:63171332-63171351 None:intergenic 55.0%
GCAGAGACGGAAGCAGCATA+TGG + chr3_1:63171335-63171354 None:intergenic 55.0%
CTTCCGTCTCTGCTTCTCCA+AGG - chr3_1:63171342-63171361 Msa0367490:three_prime_UTR 55.0%
CTTTGCATCCTCAGTGCACC+TGG + chr3_1:63171486-63171505 None:intergenic 55.0%
! GAAGGACCAGAAGCACACAG+TGG - chr3_1:63172392-63172411 Msa0367490:intron 55.0%
ACTTCCTCTGGATGAGGACC+AGG - chr3_1:63172656-63172675 Msa0367490:intron 55.0%
CTAACCTGGTCCTCATCCAG+AGG + chr3_1:63172663-63172682 None:intergenic 55.0%
GAGAAAGAAGGCTGCGTCGA+GGG + chr3_1:63173941-63173960 None:intergenic 55.0%
TGAGAAAGAAGGCTGCGTCG+AGG + chr3_1:63173942-63173961 None:intergenic 55.0%
TGGGGTTAGATGCGGCCTTG+CGG - chr3_1:63172866-63172885 Msa0367490:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 63171259 63174466 63171259 ID=Msa0367490;Name=Msa0367490
chr3_1 mRNA 63171259 63174466 63171259 ID=Msa0367490-mRNA-1;Parent=Msa0367490;Name=Msa0367490-mRNA-1;_AED=0.30;_eAED=0.30;_QI=43|1|1|1|0.77|0.7|10|375|210
chr3_1 exon 63171259 63171491 63171259 ID=Msa0367490-mRNA-1:exon:12422;Parent=Msa0367490-mRNA-1
chr3_1 exon 63171524 63171638 63171524 ID=Msa0367490-mRNA-1:exon:12421;Parent=Msa0367490-mRNA-1
chr3_1 exon 63171661 63171792 63171661 ID=Msa0367490-mRNA-1:exon:12420;Parent=Msa0367490-mRNA-1
chr3_1 exon 63172030 63172100 63172030 ID=Msa0367490-mRNA-1:exon:12419;Parent=Msa0367490-mRNA-1
chr3_1 exon 63172352 63172397 63172352 ID=Msa0367490-mRNA-1:exon:12418;Parent=Msa0367490-mRNA-1
chr3_1 exon 63173048 63173108 63173048 ID=Msa0367490-mRNA-1:exon:12417;Parent=Msa0367490-mRNA-1
chr3_1 exon 63173254 63173335 63173254 ID=Msa0367490-mRNA-1:exon:12416;Parent=Msa0367490-mRNA-1
chr3_1 exon 63173903 63173937 63173903 ID=Msa0367490-mRNA-1:exon:12415;Parent=Msa0367490-mRNA-1
chr3_1 exon 63174068 63174238 63174068 ID=Msa0367490-mRNA-1:exon:12414;Parent=Msa0367490-mRNA-1
chr3_1 exon 63174362 63174466 63174362 ID=Msa0367490-mRNA-1:exon:12413;Parent=Msa0367490-mRNA-1
chr3_1 five_prime_UTR 63174424 63174466 63174424 ID=Msa0367490-mRNA-1:five_prime_utr;Parent=Msa0367490-mRNA-1
chr3_1 CDS 63174362 63174423 63174362 ID=Msa0367490-mRNA-1:cds;Parent=Msa0367490-mRNA-1
chr3_1 CDS 63174068 63174238 63174068 ID=Msa0367490-mRNA-1:cds;Parent=Msa0367490-mRNA-1
chr3_1 CDS 63173903 63173937 63173903 ID=Msa0367490-mRNA-1:cds;Parent=Msa0367490-mRNA-1
chr3_1 CDS 63173254 63173335 63173254 ID=Msa0367490-mRNA-1:cds;Parent=Msa0367490-mRNA-1
chr3_1 CDS 63173048 63173108 63173048 ID=Msa0367490-mRNA-1:cds;Parent=Msa0367490-mRNA-1
chr3_1 CDS 63172352 63172397 63172352 ID=Msa0367490-mRNA-1:cds;Parent=Msa0367490-mRNA-1
chr3_1 CDS 63172030 63172100 63172030 ID=Msa0367490-mRNA-1:cds;Parent=Msa0367490-mRNA-1
chr3_1 CDS 63171688 63171792 63171688 ID=Msa0367490-mRNA-1:cds;Parent=Msa0367490-mRNA-1
chr3_1 three_prime_UTR 63171661 63171687 63171661 ID=Msa0367490-mRNA-1:three_prime_utr;Parent=Msa0367490-mRNA-1
chr3_1 three_prime_UTR 63171524 63171638 63171524 ID=Msa0367490-mRNA-1:three_prime_utr;Parent=Msa0367490-mRNA-1
chr3_1 three_prime_UTR 63171259 63171491 63171259 ID=Msa0367490-mRNA-1:three_prime_utr;Parent=Msa0367490-mRNA-1
Gene Sequence

>Msa0367490

ATGGGAGTATTATCATTTCTCTCACTTCCACCATATGCTGCTTCCGTCTCTGCTTCTCCAAGGTGCACTGAGGATGCAAAGAGCTCGAACAACAAAATTTCTACATTAACAGCGAAAAAATATTGTTCAAGAAGGTTGATTGTTCAGTTTATCGGTATTAACCACATATTATGTTATTCTTCTCCTGCTTTGGCTGCACCAATCATGGACATGAATGAACCAGAAGTTATAAGGACTTTGAAGCTAGCTAGTGGAGTGAGAATTCAAGGAGAAGGACCAGAAGCACACAGTGGAGATTTGGTTGAATTCAATTGTGTATGCAGGCGTGCAAATGGATACTTTGTTTTCAGTACTGTAGACCAATTCAATGGAGAAAGTAATCCTGTTATACTTCCTCTGGATGAGGACCAGATGATACTGGGGTTAAAGCAGGTCTTGACTGGCATGAGAGTTGGTGGAAAGAGAAGAGCATTGATTCCACCTTCTGTAGGATATGTAGACGAGAACTTGAAGCCAATACCTGAAGAGTTTGGCCCTCGACGCAGCCTTCTTTCTCATGCACAAGAGCCTTTGGTATTTGAAGTTCAACTCTTGAAAATTCTGAGTGTTCCACAACAATCTGAATTTAATTAG

Protein sequence

>Msa0367490

MGVLSFLSLPPYAASVSASPRCTEDAKSSNNKISTLTAKKYCSRRLIVQFIGINHILCYSSPALAAPIMDMNEPEVIRTLKLASGVRIQGEGPEAHSGDLVEFNCVCRRANGYFVFSTVDQFNGESNPVILPLDEDQMILGLKQVLTGMRVGGKRRALIPPSVGYVDENLKPIPEEFGPRRSLLSHAQEPLVFEVQLLKILSVPQQSEFN*