AlfalfaGEDB | Msa0603980

M. sativa cultivar zhongmu-4 / Msa0603980

KEGG: K11253
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
PFAM: PF00125.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603980	KYP58465.1	100.000	136	0	0	1	136	5	140	1.76e-92	273

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603980	sp\|P68428\|H32_WHEAT	100.000	136	0	0	1	136	1	136	5.15e-95	272

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603980	A0A1D1ZGP1	100.000	136	0	0	1	136	1	136	1.97e-92	272

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032460	Msa0603980	0.814774	1.297979e-51	-8.615850e-47
Msa0032980	Msa0603980	0.804699	1.905464e-49	-8.615850e-47
Msa0035140	Msa0603980	0.814328	1.629663e-51	-8.615850e-47
Msa0068150	Msa0603980	0.816909	4.336832e-52	-8.615850e-47
Msa0075530	Msa0603980	0.811308	7.469138e-51	-8.615850e-47
Msa0091350	Msa0603980	0.805214	1.487492e-49	-8.615850e-47
Msa0091360	Msa0603980	0.821707	3.499167e-53	-8.615850e-47
Msa0603980	Msa0606100	0.873887	1.037434e-67	-8.615850e-47
Msa0603980	Msa0608330	0.801700	7.957537e-49	-8.615850e-47
Msa0603980	Msa0615630	0.828367	9.353411e-55	-8.615850e-47
Msa0603980	Msa0619080	0.846229	2.476580e-59	-8.615850e-47
Msa0603980	Msa0620500	0.829085	6.269719e-55	-8.615850e-47
Msa0603980	Msa0621710	0.832120	1.133403e-55	-8.615850e-47
Msa0603980	Msa0625620	0.819691	1.016860e-52	-8.615850e-47
Msa0603980	Msa0647050	0.821672	3.565663e-53	-8.615850e-47
Msa0603980	Msa0654740	0.817611	3.014239e-52	-8.615850e-47
Msa0603980	Msa0659150	0.828014	1.137336e-54	-8.615850e-47
Msa0603980	Msa0659200	0.800369	1.488721e-48	-8.615850e-47
Msa0603980	Msa0666700	0.800978	1.118128e-48	-8.615850e-47
Msa0603980	Msa0668900	0.821719	3.476611e-53	-8.615850e-47
Msa0603980	Msa0698730	0.821175	4.641693e-53	-8.615850e-47
Msa0603980	Msa0703600	0.800413	1.458090e-48	-8.615850e-47
Msa0603980	Msa0707260	0.816145	6.431046e-52	-8.615850e-47
Msa0603980	Msa0709200	0.800585	1.345358e-48	-8.615850e-47
Msa0603980	Msa0717830	0.804203	2.417623e-49	-8.615850e-47
Msa0603980	Msa0717900	0.824400	8.240886e-54	-8.615850e-47
Msa0603980	Msa0718040	0.808522	2.972455e-50	-8.615850e-47
Msa0603980	Msa0720280	0.806409	8.341935e-50	-8.615850e-47
Msa0603980	Msa0735780	0.811907	5.535403e-51	-8.615850e-47
Msa0603980	Msa0747740	0.804181	2.444065e-49	-8.615850e-47
Msa0603980	Msa0758590	0.834311	3.225389e-56	-8.615850e-47
Msa0603980	Msa0773630	0.808655	2.783500e-50	-8.615850e-47
Msa0603980	Msa0778600	0.805983	1.025725e-49	-8.615850e-47
Msa0603980	Msa0780910	0.822492	2.300895e-53	-8.615850e-47
Msa0603980	Msa0800660	0.829803	4.196158e-55	-8.615850e-47
Msa0603980	Msa0803140	0.804355	2.247642e-49	-8.615850e-47
Msa0603980	Msa0811020	0.836410	9.512918e-57	-8.615850e-47
Msa0603980	Msa0816080	0.803617	3.199911e-49	-8.615850e-47
Msa0603980	Msa0818880	0.805412	1.351851e-49	-8.615850e-47
Msa0603980	Msa0821160	0.833257	5.915581e-56	-8.615850e-47
Msa0603980	Msa0861440	0.801091	1.060338e-48	-8.615850e-47
Msa0603980	Msa0900760	0.815000	1.156777e-51	-8.615850e-47
Msa0603980	Msa0909760	0.847824	9.055729e-60	-8.615850e-47
Msa0603980	Msa0966480	0.801964	7.021931e-49	-8.615850e-47
Msa0603980	Msa1008670	0.810233	1.276267e-50	-8.615850e-47
Msa0603980	Msa1008680	0.810688	1.017635e-50	-8.615850e-47
Msa0603980	Msa1033920	0.854050	1.593449e-61	-8.615850e-47
Msa0603980	Msa1035220	0.800397	1.468971e-48	-8.615850e-47
Msa0603980	Msa1035570	0.813511	2.466963e-51	-8.615850e-47
Msa0603980	Msa1035610	0.817200	3.730393e-52	-8.615850e-47
Msa0603980	Msa1042880	0.803516	3.358920e-49	-8.615850e-47
Msa0603980	Msa1082380	0.818883	1.553388e-52	-8.615850e-47
Msa0603980	Msa1114630	0.805526	1.279255e-49	-8.615850e-47
Msa0603980	Msa1116660	0.867019	1.862856e-65	-8.615850e-47
Msa0603980	Msa1116740	0.829416	5.210142e-55	-8.615850e-47
Msa0603980	Msa1127280	0.820670	6.068540e-53	-8.615850e-47
Msa0603980	Msa1130420	0.821465	3.979585e-53	-8.615850e-47
Msa0603980	Msa1132530	0.826224	3.050389e-54	-8.615850e-47
Msa0603980	Msa1154100	0.802749	4.840638e-49	-8.615850e-47
Msa0603980	Msa1159590	0.808545	2.938975e-50	-8.615850e-47
Msa0603980	Msa1162880	0.869353	3.300570e-66	-8.615850e-47
Msa0603980	Msa1165480	0.822705	2.052831e-53	-8.615850e-47
Msa0603980	Msa1214350	0.803725	3.039760e-49	-8.615850e-47
Msa0603980	Msa1215980	0.830068	3.616009e-55	-8.615850e-47
Msa0603980	Msa1226520	0.804325	2.280937e-49	-8.615850e-47
Msa0603980	Msa1244240	0.819225	1.298562e-52	-8.615850e-47
Msa0603980	Msa1254420	0.828135	1.063794e-54	-8.615850e-47
Msa0603980	Msa1254540	0.840998	6.203547e-58	-8.615850e-47
Msa0603980	Msa1261050	0.802549	5.320986e-49	-8.615850e-47
Msa0603980	Msa1263740	0.842924	1.920628e-58	-8.615850e-47
Msa0603980	Msa1263780	0.844598	6.847356e-59	-8.615850e-47
Msa0603980	Msa1306570	0.812016	5.239974e-51	-8.615850e-47
Msa0603980	Msa1339170	0.829114	6.167906e-55	-8.615850e-47
Msa0603980	Msa1361930	0.802187	6.319735e-49	-8.615850e-47
Msa0603980	Msa1364410	0.840781	7.070073e-58	-8.615850e-47
Msa0603980	Msa1368750	0.818331	2.072480e-52	-8.615850e-47
Msa0603980	Msa1374790	0.819856	9.324658e-53	-8.615850e-47
Msa0603980	Msa1375350	0.818918	1.525136e-52	-8.615850e-47
Msa0603980	Msa1387500	0.824287	8.758193e-54	-8.615850e-47
Msa0603980	Msa1393560	0.831105	2.015554e-55	-8.615850e-47
Msa0603980	Msa1409410	0.809440	1.890689e-50	-8.615850e-47
Msa0603980	Msa1426110	0.802171	6.366726e-49	-8.615850e-47
Msa0603980	Msa1446100	0.817815	2.711002e-52	-8.615850e-47
Msa0603980	Msa1447170	0.848296	6.708638e-60	-8.615850e-47
Msa0603980	Msa1450190	0.806089	9.745533e-50	-8.615850e-47
Msa0603980	Msa1451820	0.817187	3.755459e-52	-8.615850e-47
Msa0140200	Msa0603980	0.810129	1.343694e-50	-8.615850e-47
Msa0140380	Msa0603980	0.804350	2.253580e-49	-8.615850e-47
Msa0190730	Msa0603980	0.819767	9.771025e-53	-8.615850e-47
Msa0233020	Msa0603980	0.810307	1.230471e-50	-8.615850e-47
Msa0367150	Msa0603980	0.804710	1.895977e-49	-8.615850e-47
Msa0367520	Msa0603980	0.810214	1.288497e-50	-8.615850e-47
Msa0373170	Msa0603980	0.824144	9.465901e-54	-8.615850e-47
Msa0373500	Msa0603980	0.810578	1.075085e-50	-8.615850e-47
Msa0380710	Msa0603980	0.802709	4.933539e-49	-8.615850e-47
Msa0383000	Msa0603980	0.805643	1.209274e-49	-8.615850e-47
Msa0389950	Msa0603980	0.804964	1.677287e-49	-8.615850e-47
Msa0415140	Msa0603980	0.802075	6.662153e-49	-8.615850e-47
Msa0421130	Msa0603980	0.804005	2.658790e-49	-8.615850e-47
Msa0422050	Msa0603980	0.832657	8.342778e-56	-8.615850e-47
Msa0432010	Msa0603980	0.817805	2.725675e-52	-8.615850e-47
Msa0433150	Msa0603980	0.802186	6.321316e-49	-8.615850e-47
Msa0466880	Msa0603980	0.812973	3.238137e-51	-8.615850e-47
Msa0467690	Msa0603980	0.823457	1.371077e-53	-8.615850e-47
Msa0468700	Msa0603980	0.812393	4.337641e-51	-8.615850e-47
Msa0272260	Msa0603980	0.801044	1.083978e-48	-8.615850e-47
Msa0503990	Msa0603980	0.800897	1.161868e-48	-8.615850e-47
Msa0513080	Msa0603980	0.817210	3.710291e-52	-8.615850e-47
Msa0514020	Msa0603980	0.808425	3.117448e-50	-8.615850e-47
Msa0514580	Msa0603980	0.809229	2.098366e-50	-8.615850e-47
Msa0520870	Msa0603980	0.830853	2.323421e-55	-8.615850e-47
Msa0524520	Msa0603980	0.800230	1.588879e-48	-8.615850e-47
Msa0527850	Msa0603980	0.805571	1.251603e-49	-8.615850e-47
Msa0531960	Msa0603980	0.802052	6.736581e-49	-8.615850e-47
Msa0537990	Msa0603980	0.818402	1.997033e-52	-8.615850e-47
Msa0549020	Msa0603980	0.820471	6.740072e-53	-8.615850e-47
Msa0550590	Msa0603980	0.829917	3.935151e-55	-8.615850e-47
Msa0561560	Msa0603980	0.833975	3.915396e-56	-8.615850e-47
Msa0567170	Msa0603980	0.810487	1.124670e-50	-8.615850e-47
Msa0571620	Msa0603980	0.827609	1.423123e-54	-8.615850e-47
Msa0572830	Msa0603980	0.800352	1.500773e-48	-8.615850e-47
Msa0577280	Msa0603980	0.800409	1.460994e-48	-8.615850e-47
Msa0577330	Msa0603980	0.801239	9.888787e-49	-8.615850e-47
Msa0585340	Msa0603980	0.817104	3.919976e-52	-8.615850e-47
Msa0586200	Msa0603980	0.800355	1.498503e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603980	MtrunA17_Chr5g0410931	100.000	136	0	0	1	136	1	136	3.79e-96	272
Msa0603980	MtrunA17_Chr5g0410951	100.000	136	0	0	1	136	1	136	3.79e-96	272
Msa0603980	MtrunA17_Chr8g0383851	100.000	136	0	0	1	136	1	136	3.79e-96	272
Msa0603980	MtrunA17_Chr8g0383781	100.000	136	0	0	1	136	1	136	3.79e-96	272
Msa0603980	MtrunA17_Chr8g0390361	100.000	136	0	0	1	136	1	136	3.79e-96	272
Msa0603980	MtrunA17_Chr2g0295191	100.000	136	0	0	1	136	1	136	3.79e-96	272
Msa0603980	MtrunA17_Chr7g0237661	100.000	136	0	0	1	136	1	136	3.79e-96	272
Msa0603980	MtrunA17_Chr4g0033041	100.000	136	0	0	1	136	1	136	3.79e-96	272
Msa0603980	MtrunA17_Chr7g0218971	100.000	136	0	0	1	136	1	136	3.79e-96	272
Msa0603980	MtrunA17_Chr4g0046301	100.000	136	0	0	1	136	1	136	3.79e-96	272
Msa0603980	MtrunA17_Chr8g0364801	100.000	136	0	0	1	136	1	136	3.79e-96	272
Msa0603980	MtrunA17_Chr4g0054161	97.059	136	4	0	1	136	1	136	2.60e-93	265
Msa0603980	MtrunA17_Chr8g0363741	97.059	136	4	0	1	136	1	136	2.60e-93	265
Msa0603980	MtrunA17_Chr1g0156021	97.059	136	4	0	1	136	1	136	2.60e-93	265
Msa0603980	MtrunA17_Chr4g0054151	97.059	136	4	0	1	136	4	139	2.61e-93	265
Msa0603980	MtrunA17_Chr8g0388121	96.324	136	5	0	1	136	1	136	1.09e-92	264
Msa0603980	MtrunA17_Chr2g0319141	89.706	136	14	0	1	136	1	136	1.10e-86	248
Msa0603980	MtrunA17_Chr2g0319151	89.706	136	14	0	1	136	1	136	1.10e-86	248
Msa0603980	MtrunA17_Chr2g0319131	85.616	146	11	1	1	136	1	146	1.38e-82	238
Msa0603980	MtrunA17_Chr2g0319121	84.559	136	19	2	1	135	1	135	5.82e-75	219
Msa0603980	MtrunA17_Chr7g0218961	86.607	112	15	0	25	136	2	113	8.01e-66	195
Msa0603980	MtrunA17_Chr7g0222991	67.164	134	43	1	1	134	10	142	5.47e-56	171
Msa0603980	MtrunA17_Chr5g0407311	67.241	116	35	2	1	116	1	113	1.29e-45	144
Msa0603980	MtrunA17_Chr7g0223001	58.647	133	41	3	3	134	27	146	5.46e-43	139
Msa0603980	MtrunA17_Chr7g0240791	100.000	66	0	0	1	66	1	66	9.61e-41	133
Msa0603980	MtrunA17_Chr8g0347231	55.102	98	43	1	37	133	28	125	3.80e-30	105

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0603980	AT1G09200.1	99.265	136	1	0	1	136	1	136	1.62e-95	271
Msa0603980	AT5G65360.1	99.265	136	1	0	1	136	1	136	1.62e-95	271
Msa0603980	AT5G10390.1	99.265	136	1	0	1	136	1	136	1.62e-95	271
Msa0603980	AT5G10400.1	99.265	136	1	0	1	136	1	136	1.62e-95	271
Msa0603980	AT3G27360.1	99.265	136	1	0	1	136	1	136	1.62e-95	271
Msa0603980	AT4G40030.3	97.059	136	4	0	1	136	1	136	3.59e-93	265
Msa0603980	AT4G40030.1	97.059	136	4	0	1	136	1	136	3.59e-93	265
Msa0603980	AT4G40030.4	97.059	136	4	0	1	136	1	136	3.59e-93	265
Msa0603980	AT5G10980.1	97.059	136	4	0	1	136	1	136	3.59e-93	265
Msa0603980	AT4G40040.2	97.059	136	4	0	1	136	1	136	3.59e-93	265
Msa0603980	AT4G40040.3	97.059	136	4	0	1	136	1	136	3.59e-93	265
Msa0603980	AT4G40040.1	97.059	136	4	0	1	136	1	136	3.59e-93	265
Msa0603980	AT4G40030.2	97.059	136	4	0	1	136	29	164	7.05e-93	266
Msa0603980	AT5G65350.1	94.853	136	7	0	1	136	1	136	5.30e-91	260
Msa0603980	AT1G75600.1	93.382	136	9	0	1	136	1	136	1.25e-89	256
Msa0603980	AT1G13370.1	93.382	136	9	0	1	136	1	136	5.55e-89	254
Msa0603980	AT1G19890.1	89.781	137	13	1	1	136	1	137	1.07e-83	241
Msa0603980	AT5G12910.1	71.111	135	34	2	1	135	1	130	9.90e-67	198
Msa0603980	AT1G01370.2	53.982	113	49	2	24	134	63	174	2.97e-31	110
Msa0603980	AT1G01370.1	53.982	113	49	2	24	134	63	174	2.97e-31	110
Msa0603980	AT1G01370.4	53.982	113	49	2	24	134	63	174	2.97e-31	110
Msa0603980	AT1G01370.3	53.982	113	49	2	24	134	63	174	2.97e-31	110

Find 38 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGGTGGCTGGGGCGGATTTC+CGG	0.131995	4_2:-49121494	None:intergenic
TTCTTCACTCCGCCGGTGGC+TGG	0.208877	4_2:-49121507	None:intergenic
TTCACGGAGTGCGACGGTTC+CGG	0.309270	4_2:-49121547	None:intergenic
TCACGGAGTGCGACGGTTCC+GGG	0.327175	4_2:-49121546	None:intergenic
TCTTCACTCCGCCGGTGGCT+GGG	0.346533	4_2:-49121506	None:intergenic
GGTGGCTGGGGCGGATTTCC+GGG	0.349417	4_2:-49121493	None:intergenic
TTGAATATCCTTGGGCATAA+TGG	0.390549	4_2:-49121772	None:intergenic
CACGAACGAGACGTTGGAAT+GGG	0.414135	4_2:-49121614	None:intergenic
TTATCTCGTTGGACTCTTTG+AGG	0.419676	4_2:+49121713	Msa0603980:CDS
GAGCAGAAACAGCGCTACTC+TGG	0.427137	4_2:-49121671	None:intergenic
CTTCACTCCGCCGGTGGCTG+GGG	0.429355	4_2:-49121505	None:intergenic
CGGAAATCCGCCCCAGCCAC+CGG	0.439556	4_2:+49121495	Msa0603980:CDS
TTTGGTATTTGCGGATTTCA+CGG	0.451483	4_2:-49121563	None:intergenic
CACTCCGCCGGTGGCTGGGG+CGG	0.455168	4_2:-49121502	None:intergenic
GCGAGCGAGTTGAATATCCT+TGG	0.467952	4_2:-49121781	None:intergenic
CGAGCGAGTTGAATATCCTT+GGG	0.506955	4_2:-49121780	None:intergenic
CGACGGTTCCGGGACGGAAA+CGG	0.513929	4_2:-49121536	None:intergenic
TCACGAACGAGACGTTGGAA+TGG	0.518359	4_2:-49121615	None:intergenic
AAGCCTCACCGTTTCCGTCC+CGG	0.527320	4_2:+49121528	Msa0603980:CDS
TCGGGGAGCTTTGCCTCCGG+TGG	0.527426	4_2:-49121448	None:intergenic
AAACAGCGCTACTCTGGAAA+CGG	0.532210	4_2:-49121665	None:intergenic
GCTGCTGAAGCTTATCTCGT+TGG	0.533530	4_2:+49121702	Msa0603980:CDS
GCTACTCTGGAAACGGAGAT+CGG	0.538527	4_2:-49121658	None:intergenic
CAATTTCACGAACGAGACGT+TGG	0.552469	4_2:-49121620	None:intergenic
GGCTGGGGCGGATTTCCGGG+CGG	0.553153	4_2:-49121490	None:intergenic
CAACTCGCTCGCAGAATCAG+AGG	0.556058	4_2:+49121792	Msa0603980:CDS
GTGAGGCTTCTTCACTCCGC+CGG	0.560763	4_2:-49121514	None:intergenic
AGGCTTCTTCACTCCGCCGG+TGG	0.575034	4_2:-49121511	None:intergenic
TCGCAGAATCAGAGGCGAGA+GGG	0.584947	4_2:+49121800	Msa0603980:CDS
CAAACAGCTCGCAAATCCAC+CGG	0.586123	4_2:+49121432	Msa0603980:CDS
AGCTAGCGACAAAAGCCGCC+CGG	0.586742	4_2:+49121475	Msa0603980:CDS
GCGGATTTCACGGAGTGCGA+CGG	0.595387	4_2:-49121553	None:intergenic
CTCGCAGAATCAGAGGCGAG+AGG	0.599896	4_2:+49121799	Msa0603980:CDS
GAGAGTTACCATTATGCCCA+AGG	0.602637	4_2:+49121764	Msa0603980:CDS
AAATCCGCCCCAGCCACCGG+CGG	0.628636	4_2:+49121498	Msa0603980:CDS
GGAGTGCGACGGTTCCGGGA+CGG	0.649162	4_2:-49121542	None:intergenic
GTTCCGGGACGGAAACGGTG+AGG	0.691461	4_2:-49121531	None:intergenic
ACAGCTCGCAAATCCACCGG+AGG	0.704783	4_2:+49121435	Msa0603980:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TTTGGTATTTGCGGATTTCA+CGG	-	chr4_2:49121566-49121585	None:intergenic	35.0%
!!!	CTGTGCTTTTTTGGTATTTG+CGG	-	chr4_2:49121575-49121594	None:intergenic	35.0%
	TTGAATATCCTTGGGCATAA+TGG	-	chr4_2:49121775-49121794	None:intergenic	35.0%
!!	TTTTGTCGCTAGCTGTTTTC+GGG	-	chr4_2:49121469-49121488	None:intergenic	40.0%
!!	CTTTTGTCGCTAGCTGTTTT+CGG	-	chr4_2:49121470-49121489	None:intergenic	40.0%
!!!	TGAGAAGCTCTGTGCTTTTT+TGG	-	chr4_2:49121584-49121603	None:intergenic	40.0%
	TTATCTCGTTGGACTCTTTG+AGG	+	chr4_2:49121713-49121732	Msa0603980:CDS	40.0%
!!	TTTGTCGCTAGCTGTTTTCG+GGG	-	chr4_2:49121468-49121487	None:intergenic	45.0%
!	GACGTTGGAATGGGAGTTTT+CGG	-	chr4_2:49121608-49121627	None:intergenic	45.0%
	CAATTTCACGAACGAGACGT+TGG	-	chr4_2:49121623-49121642	None:intergenic	45.0%
!	AAACAGCGCTACTCTGGAAA+CGG	-	chr4_2:49121668-49121687	None:intergenic	45.0%
	GAGAGTTACCATTATGCCCA+AGG	+	chr4_2:49121764-49121783	Msa0603980:CDS	45.0%
!	CGAGCGAGTTGAATATCCTT+GGG	-	chr4_2:49121783-49121802	None:intergenic	45.0%
	CAAACAGCTCGCAAATCCAC+CGG	+	chr4_2:49121432-49121451	Msa0603980:CDS	50.0%
	CACGAACGAGACGTTGGAAT+GGG	-	chr4_2:49121617-49121636	None:intergenic	50.0%
	TCACGAACGAGACGTTGGAA+TGG	-	chr4_2:49121618-49121637	None:intergenic	50.0%
!	GCTACTCTGGAAACGGAGAT+CGG	-	chr4_2:49121661-49121680	None:intergenic	50.0%
	GCTGCTGAAGCTTATCTCGT+TGG	+	chr4_2:49121702-49121721	Msa0603980:CDS	50.0%
!	GCGAGCGAGTTGAATATCCT+TGG	-	chr4_2:49121784-49121803	None:intergenic	50.0%
!!	TTTTCGGGGAGCTTTGCCTC+CGG	-	chr4_2:49121454-49121473	None:intergenic	55.0%
	GAGCAGAAACAGCGCTACTC+TGG	-	chr4_2:49121674-49121693	None:intergenic	55.0%
	CAACTCGCTCGCAGAATCAG+AGG	+	chr4_2:49121792-49121811	Msa0603980:CDS	55.0%
	TCGCAGAATCAGAGGCGAGA+GGG	+	chr4_2:49121800-49121819	Msa0603980:CDS	55.0%
	ACAGCTCGCAAATCCACCGG+AGG	+	chr4_2:49121435-49121454	Msa0603980:CDS	60.0%
	AGCTAGCGACAAAAGCCGCC+CGG	+	chr4_2:49121475-49121494	Msa0603980:CDS	60.0%
	GTGAGGCTTCTTCACTCCGC+CGG	-	chr4_2:49121517-49121536	None:intergenic	60.0%
	AAGCCTCACCGTTTCCGTCC+CGG	+	chr4_2:49121528-49121547	Msa0603980:CDS	60.0%
	TTCACGGAGTGCGACGGTTC+CGG	-	chr4_2:49121550-49121569	None:intergenic	60.0%
	GCGGATTTCACGGAGTGCGA+CGG	-	chr4_2:49121556-49121575	None:intergenic	60.0%
	CTCGCAGAATCAGAGGCGAG+AGG	+	chr4_2:49121799-49121818	Msa0603980:CDS	60.0%
	TCTTCACTCCGCCGGTGGCT+GGG	-	chr4_2:49121509-49121528	None:intergenic	65.0%
	TTCTTCACTCCGCCGGTGGC+TGG	-	chr4_2:49121510-49121529	None:intergenic	65.0%
	AGGCTTCTTCACTCCGCCGG+TGG	-	chr4_2:49121514-49121533	None:intergenic	65.0%
	GTTCCGGGACGGAAACGGTG+AGG	-	chr4_2:49121534-49121553	None:intergenic	65.0%
	CGACGGTTCCGGGACGGAAA+CGG	-	chr4_2:49121539-49121558	None:intergenic	65.0%
	TCACGGAGTGCGACGGTTCC+GGG	-	chr4_2:49121549-49121568	None:intergenic	65.0%
	TCGGGGAGCTTTGCCTCCGG+TGG	-	chr4_2:49121451-49121470	None:intergenic	70.0%
!	GGTGGCTGGGGCGGATTTCC+GGG	-	chr4_2:49121496-49121515	None:intergenic	70.0%
!	CGGTGGCTGGGGCGGATTTC+CGG	-	chr4_2:49121497-49121516	None:intergenic	70.0%
	CGGAAATCCGCCCCAGCCAC+CGG	+	chr4_2:49121495-49121514	Msa0603980:CDS	70.0%
	AAATCCGCCCCAGCCACCGG+CGG	+	chr4_2:49121498-49121517	Msa0603980:CDS	70.0%
	CTTCACTCCGCCGGTGGCTG+GGG	-	chr4_2:49121508-49121527	None:intergenic	70.0%
	GGAGTGCGACGGTTCCGGGA+CGG	-	chr4_2:49121545-49121564	None:intergenic	70.0%
!	GGCTGGGGCGGATTTCCGGG+CGG	-	chr4_2:49121493-49121512	None:intergenic	75.0%
!	CACTCCGCCGGTGGCTGGGG+CGG	-	chr4_2:49121505-49121524	None:intergenic	80.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	49121417	49121827	49121417	ID=Msa0603980;Name=Msa0603980
chr4_2	mRNA	49121417	49121827	49121417	ID=Msa0603980-mRNA-1;Parent=Msa0603980;Name=Msa0603980-mRNA-1;_AED=0.41;_eAED=0.42;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|136
chr4_2	exon	49121417	49121827	49121417	ID=Msa0603980-mRNA-1:exon:11353;Parent=Msa0603980-mRNA-1
chr4_2	CDS	49121417	49121827	49121417	ID=Msa0603980-mRNA-1:cds;Parent=Msa0603980-mRNA-1

Gene Sequence

>Msa0603980

ATGGCGCGTACAAAGCAAACAGCTCGCAAATCCACCGGAGGCAAAGCTCCCCGAAAACAGCTAGCGACAAAAGCCGCCCGGAAATCCGCCCCAGCCACCGGCGGAGTGAAGAAGCCTCACCGTTTCCGTCCCGGAACCGTCGCACTCCGTGAAATCCGCAAATACCAAAAAAGCACAGAGCTTCTCATCCGAAAACTCCCATTCCAACGTCTCGTTCGTGAAATTGCTCAAGATTTCAAAACCGATCTCCGTTTCCAGAGTAGCGCTGTTTCTGCTCTTCAAGAAGCTGCTGAAGCTTATCTCGTTGGACTCTTTGAGGATACGAATCTTTGTGCTATTCATGCTAAGAGAGTTACCATTATGCCCAAGGATATTCAACTCGCTCGCAGAATCAGAGGCGAGAGGGCTTAA

Protein sequence

>Msa0603980

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*