Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa1437560 | 0.826699 | 2.350452e-54 | -8.615850e-47 |
| Msa0011660 | Msa1437560 | -0.810814 | 9.558293e-51 | -8.615850e-47 |
| Msa0021210 | Msa1437560 | 0.807250 | 5.540061e-50 | -8.615850e-47 |
| Msa0044000 | Msa1437560 | 0.810768 | 9.779747e-51 | -8.615850e-47 |
| Msa0079070 | Msa1437560 | 0.808341 | 3.247819e-50 | -8.615850e-47 |
| Msa0087800 | Msa1437560 | 0.814530 | 1.469783e-51 | -8.615850e-47 |
| Msa0089820 | Msa1437560 | 0.800408 | 1.461812e-48 | -8.615850e-47 |
| Msa0090570 | Msa1437560 | 0.807077 | 6.028691e-50 | -8.615850e-47 |
| Msa0114430 | Msa1437560 | 0.808129 | 3.604426e-50 | -8.615850e-47 |
| Msa1385460 | Msa1437560 | 0.804348 | 2.255824e-49 | -8.615850e-47 |
| Msa1390690 | Msa1437560 | 0.837619 | 4.670700e-57 | -8.615850e-47 |
| Msa1390700 | Msa1437560 | 0.856490 | 3.105873e-62 | -8.615850e-47 |
| Msa1392900 | Msa1437560 | 0.831228 | 1.880482e-55 | -8.615850e-47 |
| Msa1392910 | Msa1437560 | 0.848835 | 4.758930e-60 | -8.615850e-47 |
| Msa1404610 | Msa1437560 | 0.909000 | 9.230960e-82 | -8.615850e-47 |
| Msa1410680 | Msa1437560 | 0.814535 | 1.466398e-51 | -8.615850e-47 |
| Msa1412540 | Msa1437560 | 0.806675 | 7.329759e-50 | -8.615850e-47 |
| Msa1427230 | Msa1437560 | 0.805055 | 1.605343e-49 | -8.615850e-47 |
| Msa1437560 | Msa1449340 | -0.801338 | 9.439846e-49 | -8.615850e-47 |
| Msa1437560 | Msa1458750 | 0.801262 | 9.782472e-49 | -8.615850e-47 |
| Msa1437560 | Msa1466540 | 0.834752 | 2.499519e-56 | -8.615850e-47 |
| Msa0613440 | Msa1437560 | 0.810450 | 1.145559e-50 | -8.615850e-47 |
| Msa0617640 | Msa1437560 | 0.813112 | 3.017859e-51 | -8.615850e-47 |
| Msa0620930 | Msa1437560 | 0.804817 | 1.800836e-49 | -8.615850e-47 |
| Msa0625720 | Msa1437560 | 0.804956 | 1.683719e-49 | -8.615850e-47 |
| Msa0638360 | Msa1437560 | 0.801511 | 8.698701e-49 | -8.615850e-47 |
| Msa0663390 | Msa1437560 | 0.800752 | 1.243728e-48 | -8.615850e-47 |
| Msa0682680 | Msa1437560 | 0.804622 | 1.977664e-49 | -8.615850e-47 |
| Msa0696390 | Msa1437560 | 0.800655 | 1.301570e-48 | -8.615850e-47 |
| Msa0698540 | Msa1437560 | 0.804203 | 2.418388e-49 | -8.615850e-47 |
| Msa0703780 | Msa1437560 | 0.819588 | 1.073156e-52 | -8.615850e-47 |
| Msa0707250 | Msa1437560 | 0.815061 | 1.120903e-51 | -8.615850e-47 |
| Msa0731940 | Msa1437560 | 0.811951 | 5.415410e-51 | -8.615850e-47 |
| Msa0750650 | Msa1437560 | 0.820104 | 8.181617e-53 | -8.615850e-47 |
| Msa0760130 | Msa1437560 | 0.800756 | 1.241503e-48 | -8.615850e-47 |
| Msa0762970 | Msa1437560 | 0.812409 | 4.301281e-51 | -8.615850e-47 |
| Msa0810220 | Msa1437560 | 0.809967 | 1.456442e-50 | -8.615850e-47 |
| Msa0820850 | Msa1437560 | 0.804403 | 2.197124e-49 | -8.615850e-47 |
| Msa0831850 | Msa1437560 | 0.809021 | 2.324417e-50 | -8.615850e-47 |
| Msa0832340 | Msa1437560 | 0.819008 | 1.455214e-52 | -8.615850e-47 |
| Msa0835230 | Msa1437560 | 0.804399 | 2.201233e-49 | -8.615850e-47 |
| Msa0127800 | Msa1437560 | 0.814486 | 1.503165e-51 | -8.615850e-47 |
| Msa0131770 | Msa1437560 | 0.819664 | 1.031159e-52 | -8.615850e-47 |
| Msa0150840 | Msa1437560 | 0.804437 | 2.160938e-49 | -8.615850e-47 |
| Msa0166560 | Msa1437560 | 0.804146 | 2.485296e-49 | -8.615850e-47 |
| Msa0180500 | Msa1437560 | 0.839790 | 1.283186e-57 | -8.615850e-47 |
| Msa0204840 | Msa1437560 | 0.800761 | 1.238243e-48 | -8.615850e-47 |
| Msa0211150 | Msa1437560 | 0.804411 | 2.188821e-49 | -8.615850e-47 |
| Msa0223010 | Msa1437560 | 0.802323 | 5.925873e-49 | -8.615850e-47 |
| Msa0229380 | Msa1437560 | 0.811530 | 6.684889e-51 | -8.615850e-47 |
| Msa1227730 | Msa1437560 | 0.801964 | 7.022572e-49 | -8.615850e-47 |
| Msa1232740 | Msa1437560 | 0.831064 | 2.062666e-55 | -8.615850e-47 |
| Msa1284680 | Msa1437560 | 0.806333 | 8.658009e-50 | -8.615850e-47 |
| Msa1286800 | Msa1437560 | 0.827963 | 1.169974e-54 | -8.615850e-47 |
| Msa1287190 | Msa1437560 | 0.827598 | 1.432172e-54 | -8.615850e-47 |
| Msa1287220 | Msa1437560 | 0.824312 | 8.640332e-54 | -8.615850e-47 |
| Msa1298510 | Msa1437560 | 0.811935 | 5.457617e-51 | -8.615850e-47 |
| Msa1300340 | Msa1437560 | 0.809562 | 1.779584e-50 | -8.615850e-47 |
| Msa1305810 | Msa1437560 | 0.821632 | 3.641720e-53 | -8.615850e-47 |
| Msa1308870 | Msa1437560 | 0.818911 | 1.530940e-52 | -8.615850e-47 |
| Msa1313320 | Msa1437560 | 0.833290 | 5.807003e-56 | -8.615850e-47 |
| Msa1331000 | Msa1437560 | 0.804884 | 1.743558e-49 | -8.615850e-47 |
| Msa0367870 | Msa1437560 | 0.825936 | 3.570464e-54 | -8.615850e-47 |
| Msa0381610 | Msa1437560 | -0.822116 | 2.813994e-53 | -8.615850e-47 |
| Msa0387280 | Msa1437560 | 0.807156 | 5.800140e-50 | -8.615850e-47 |
| Msa0413410 | Msa1437560 | 0.807286 | 5.444679e-50 | -8.615850e-47 |
| Msa0430920 | Msa1437560 | 0.801856 | 7.390821e-49 | -8.615850e-47 |
| Msa0450400 | Msa1437560 | -0.817702 | 2.875953e-52 | -8.615850e-47 |
| Msa0460590 | Msa1437560 | 0.810482 | 1.127803e-50 | -8.615850e-47 |
| Msa0464680 | Msa1437560 | 0.810560 | 1.084951e-50 | -8.615850e-47 |
| Msa0481970 | Msa1437560 | 0.813950 | 1.974371e-51 | -8.615850e-47 |
| Msa1003620 | Msa1437560 | 0.809320 | 2.006054e-50 | -8.615850e-47 |
| Msa1046460 | Msa1437560 | 0.802712 | 4.924732e-49 | -8.615850e-47 |
| Msa1051770 | Msa1437560 | 0.804237 | 2.378815e-49 | -8.615850e-47 |
| Msa1063420 | Msa1437560 | 0.800583 | 1.346447e-48 | -8.615850e-47 |
| Msa0241140 | Msa1437560 | 0.808029 | 3.784488e-50 | -8.615850e-47 |
| Msa0259210 | Msa1437560 | 0.849620 | 2.876540e-60 | -8.615850e-47 |
| Msa0259220 | Msa1437560 | 0.825305 | 5.040136e-54 | -8.615850e-47 |
| Msa0271770 | Msa1437560 | 0.807221 | 5.620482e-50 | -8.615850e-47 |
| Msa0317970 | Msa1437560 | 0.821244 | 4.476714e-53 | -8.615850e-47 |
| Msa0319170 | Msa1437560 | 0.804039 | 2.615629e-49 | -8.615850e-47 |
| Msa0326480 | Msa1437560 | 0.800275 | 1.555758e-48 | -8.615850e-47 |
| Msa0336310 | Msa1437560 | 0.858029 | 1.090540e-62 | -8.615850e-47 |
| Msa0336320 | Msa1437560 | 0.862388 | 5.250930e-64 | -8.615850e-47 |
| Msa0340450 | Msa1437560 | 0.800577 | 1.350440e-48 | -8.615850e-47 |
| Msa0363790 | Msa1437560 | 0.816605 | 5.073371e-52 | -8.615850e-47 |
| Msa1111870 | Msa1437560 | 0.800703 | 1.272519e-48 | -8.615850e-47 |
| Msa1113170 | Msa1437560 | 0.833923 | 4.035647e-56 | -8.615850e-47 |
| Msa1121480 | Msa1437560 | 0.811108 | 8.257152e-51 | -8.615850e-47 |
| Msa1121490 | Msa1437560 | 0.824563 | 7.544808e-54 | -8.615850e-47 |
| Msa1137570 | Msa1437560 | 0.838561 | 2.673462e-57 | -8.615850e-47 |
| Msa1167340 | Msa1437560 | 0.816246 | 6.103787e-52 | -8.615850e-47 |
| Msa1204630 | Msa1437560 | 0.807196 | 5.687233e-50 | -8.615850e-47 |
| Msa1210020 | Msa1437560 | 0.810669 | 1.027367e-50 | -8.615850e-47 |
| Msa0521010 | Msa1437560 | 0.802204 | 6.267004e-49 | -8.615850e-47 |
| Msa0521740 | Msa1437560 | 0.820212 | 7.729532e-53 | -8.615850e-47 |
| Msa0529040 | Msa1437560 | 0.811949 | 5.420880e-51 | -8.615850e-47 |
| Msa0529890 | Msa1437560 | 0.809242 | 2.084985e-50 | -8.615850e-47 |
| Msa0545700 | Msa1437560 | 0.834803 | 2.426167e-56 | -8.615850e-47 |
| Msa0572840 | Msa1437560 | 0.801376 | 9.269440e-49 | -8.615850e-47 |
| Msa0580180 | Msa1437560 | 0.813129 | 2.992569e-51 | -8.615850e-47 |
| Msa0585560 | Msa1437560 | 0.808802 | 2.589266e-50 | -8.615850e-47 |
| Msa0594660 | Msa1437560 | 0.804347 | 2.257042e-49 | -8.615850e-47 |
| Msa0844420 | Msa1437560 | 0.846158 | 2.589618e-59 | -8.615850e-47 |
| Msa0844450 | Msa1437560 | 0.827480 | 1.528339e-54 | -8.615850e-47 |
| Msa0844490 | Msa1437560 | 0.854988 | 8.524881e-62 | -8.615850e-47 |
| Msa0849030 | Msa1437560 | 0.802322 | 5.926566e-49 | -8.615850e-47 |
| Msa0853520 | Msa1437560 | 0.824150 | 9.430981e-54 | -8.615850e-47 |
| Msa0861130 | Msa1437560 | 0.804933 | 1.703144e-49 | -8.615850e-47 |
| Msa0890550 | Msa1437560 | 0.807012 | 6.221061e-50 | -8.615850e-47 |
| Msa0897330 | Msa1437560 | 0.831655 | 1.475779e-55 | -8.615850e-47 |
| Msa0927380 | Msa1437560 | 0.833142 | 6.319461e-56 | -8.615850e-47 |
| Msa0933100 | Msa1437560 | 0.808466 | 3.054034e-50 | -8.615850e-47 |
| Msa0936300 | Msa1437560 | 0.811516 | 6.731924e-51 | -8.615850e-47 |
| Msa0936390 | Msa1437560 | 0.800072 | 1.710856e-48 | -8.615850e-47 |
| Msa0947660 | Msa1437560 | 0.802971 | 4.354452e-49 | -8.615850e-47 |
| Msa0967380 | Msa1437560 | 0.813624 | 2.329757e-51 | -8.615850e-47 |
| Msa0969520 | Msa1437560 | 0.843737 | 1.165607e-58 | -8.615850e-47 |
| Msa0969810 | Msa1437560 | 0.811862 | 5.661635e-51 | -8.615850e-47 |
| Msa0974070 | Msa1437560 | 0.811396 | 7.150491e-51 | -8.615850e-47 |
| Msa0974080 | Msa1437560 | 0.821161 | 4.678279e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCAGAACAACCTGCTTC+TGG | 0.307549 | tig0028330:-26220 | Msa1437550:CDS |
| CAAGCAAACTGCCTCCATAT+TGG | 0.309164 | tig0028330:-26152 | Msa1437550:CDS |
| GATCCAGAAGCAGGTTGTTC+TGG | 0.359766 | tig0028330:+26217 | Msa1437560:CDS |
| AAGCAAACTGCCTCCATATT+GGG | 0.368564 | tig0028330:-26151 | Msa1437550:CDS |
| CAATATGGAGGCAGTTTGCT+TGG | 0.417284 | tig0028330:+26153 | Msa1437560:CDS |
| AAGAAACCTGCCTCCACTAC+TGG | 0.419316 | tig0028330:-26193 | Msa1437550:CDS |
| GGGAAAACTACTATCTGAAA+CGG | 0.423786 | tig0028330:-26131 | Msa1437550:CDS |
| GAAGGTGACACATGAAGATA+TGG | 0.435932 | tig0028330:+28302 | Msa1437560:intron |
| TTCTCCTTCTCCAACTCTCA+TGG | 0.449011 | tig0028330:-28145 | None:intergenic |
| CACATGAAGATATGGAGAAA+TGG | 0.463150 | tig0028330:+28310 | Msa1437560:CDS |
| GGAGGCAGTTTGCTTGGTTG+CGG | 0.464987 | tig0028330:+26159 | Msa1437560:CDS |
| GGAAAACTACTATCTGAAAC+GGG | 0.470531 | tig0028330:-26130 | Msa1437550:CDS |
| GGCTTCTTCTTCTGCTGTAG+AGG | 0.482912 | tig0028330:+26099 | Msa1437560:CDS |
| GAAGAAGAAGCCTCAACACC+GGG | 0.484719 | tig0028330:-26088 | Msa1437550:CDS |
| GGTTTCTTCGATCCAGAAGC+AGG | 0.498202 | tig0028330:+26208 | Msa1437560:CDS |
| AAGAAGAAGAAGAAAAGGGT+TGG | 0.500626 | tig0028330:+28404 | Msa1437560:CDS |
| GGCAGTTTGCTTGGTTGCGG+AGG | 0.502566 | tig0028330:+26162 | Msa1437560:CDS |
| TCTTGTCCAGTAGTGGAGGC+AGG | 0.504947 | tig0028330:+26187 | Msa1437560:CDS |
| AAGTGGATGGATGAGGATGA+AGG | 0.510338 | tig0028330:+28342 | Msa1437560:CDS |
| ATGACGCGACATATGGCAAT+GGG | 0.518989 | tig0028330:+25992 | Msa1437560:CDS |
| AGAAAAGTCACCATCGGCAC+TGG | 0.522009 | tig0028330:-26047 | Msa1437550:intron |
| AGAAATGGCGTGAGTATAAG+TGG | 0.558054 | tig0028330:+28325 | Msa1437560:CDS |
| GGGTTGGAGAAGAAGAAGAG+AGG | 0.560132 | tig0028330:+28420 | Msa1437560:CDS |
| AGAAGAAGAAGCCTCAACAC+CGG | 0.569748 | tig0028330:-26089 | Msa1437550:CDS |
| AATGACGCGACATATGGCAA+TGG | 0.595049 | tig0028330:+25991 | None:intergenic |
| GGAGGCATCTTGTCCAGTAG+TGG | 0.600781 | tig0028330:+26180 | Msa1437560:CDS |
| GGCTTTGATCCAGTAGCAGA+AGG | 0.605587 | tig0028330:+26013 | Msa1437560:CDS |
| TGAGTATAAGTGGATGGATG+AGG | 0.608883 | tig0028330:+28335 | Msa1437560:CDS |
| ATGGCGTGAGTATAAGTGGA+TGG | 0.611176 | tig0028330:+28329 | Msa1437560:CDS |
| GGCATCTTGTCCAGTAGTGG+AGG | 0.616320 | tig0028330:+26183 | Msa1437560:CDS |
| TTTGATCCAGTAGCAGAAGG+TGG | 0.621582 | tig0028330:+26016 | Msa1437560:CDS |
| GTTGAAACATGTAGTTGTCG+TGG | 0.639496 | tig0028330:+28381 | Msa1437560:CDS |
| TGTCGTTGCTGTTGAAGTCG+AGG | 0.639549 | tig0028330:-28110 | None:intergenic |
| CACACAAGAAAAGTCACCAT+CGG | 0.640821 | tig0028330:-26053 | Msa1437550:intron |
| GGTTGTTGTGAATCAGATGG+AGG | 0.652209 | tig0028330:+26259 | Msa1437560:CDS |
| GGTGGTTGTTGTGAATCAGA+TGG | 0.659071 | tig0028330:+26256 | Msa1437560:CDS |
| CAGCAACGACACGAACGACG+AGG | 0.669032 | tig0028330:+28122 | Msa1437560:CDS |
| TCTGGTGCAGAAGAAGATGA+CGG | 0.746918 | tig0028330:+26235 | Msa1437560:CDS |
| GGTGCAGAAGAAGATGACGG+TGG | 0.816906 | tig0028330:+26238 | Msa1437560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTTTTTTTTTTAAAA+TGG | + | tig0028330:27322-27341 | Msa1437560:intron | 0.0% |
| !!! | TTTTTAAAATTAAAATTAAT+TGG | - | tig0028330:27512-27531 | None:intergenic | 0.0% |
| !!! | TTTTAAACATTATTAAAAAG+TGG | + | tig0028330:26868-26887 | Msa1437560:intron | 10.0% |
| !! | AAATGCTTAAAATTATGATT+GGG | + | tig0028330:27158-27177 | Msa1437560:intron | 15.0% |
| !!! | TCAAATTTTTTTTTTTACCA+GGG | - | tig0028330:27290-27309 | None:intergenic | 15.0% |
| !!! | TTCAAATTTTTTTTTTTACC+AGG | - | tig0028330:27291-27310 | None:intergenic | 15.0% |
| !! | AGATCTTTGAATTAAAATTT+GGG | - | tig0028330:27612-27631 | None:intergenic | 15.0% |
| !!! | ATTAGTTAGTTAGTTAGTTT+TGG | + | tig0028330:26514-26533 | Msa1437560:intron | 20.0% |
| !! | CATATATCAAAACACTAAAA+CGG | - | tig0028330:27028-27047 | None:intergenic | 20.0% |
| !! | GAAATGCTTAAAATTATGAT+TGG | + | tig0028330:27157-27176 | Msa1437560:intron | 20.0% |
| !!! | TTTTAAAAAAAACTGCAGAA+AGG | + | tig0028330:27523-27542 | Msa1437560:intron | 20.0% |
| !! | TTTAAAAAAAACTGCAGAAA+GGG | + | tig0028330:27524-27543 | Msa1437560:intron | 20.0% |
| !! | GATCTTTGAATTAAAATTTG+GGG | - | tig0028330:27611-27630 | None:intergenic | 20.0% |
| !! | CAGATCTTTGAATTAAAATT+TGG | - | tig0028330:27613-27632 | None:intergenic | 20.0% |
| !! | AAAAATAAGATGTAGAAGAT+TGG | - | tig0028330:28027-28046 | None:intergenic | 20.0% |
| ! | TGATAAACTTACAAATGAGT+GGG | + | tig0028330:26616-26635 | Msa1437560:intron | 25.0% |
| ! | TAAGTTTCCGTTTGATATAT+TGG | + | tig0028330:26742-26761 | Msa1437560:intron | 25.0% |
| ! | ACATAGTCCAATATATCAAA+CGG | - | tig0028330:26752-26771 | Msa1437550:intron | 25.0% |
| ! | TGATATATTGGACTATGTTA+TGG | + | tig0028330:26754-26773 | Msa1437560:intron | 25.0% |
| ! | GATATATTGGACTATGTTAT+GGG | + | tig0028330:26755-26774 | Msa1437560:intron | 25.0% |
| ! | AGCTTACAAATCAAACAAAA+AGG | - | tig0028330:26974-26993 | None:intergenic | 25.0% |
| !!! | CAACGTTGATAATTGATTAT+AGG | + | tig0028330:27215-27234 | Msa1437560:intron | 25.0% |
| !! | TATAGGCTAAAATATGCTTT+TGG | + | tig0028330:27232-27251 | Msa1437560:intron | 25.0% |
| !!! | TTTTTTTTTAAAATGGTCCC+TGG | + | tig0028330:27329-27348 | Msa1437560:intron | 25.0% |
| !!! | TTTTTTTTAAAATGGTCCCT+GGG | + | tig0028330:27330-27349 | Msa1437560:intron | 25.0% |
| ! | TAAATGATATAATTGCCATG+TGG | - | tig0028330:27431-27450 | None:intergenic | 25.0% |
| ! | TTAAAAAAAACTGCAGAAAG+GGG | + | tig0028330:27525-27544 | Msa1437560:intron | 25.0% |
| !! | TTTGTGAGATTCATTTTCAT+GGG | - | tig0028330:27681-27700 | None:intergenic | 25.0% |
| !! | TTTTGTGAGATTCATTTTCA+TGG | - | tig0028330:27682-27701 | None:intergenic | 25.0% |
| !! | TAAAAAGGGGGAAAATTTTA+GGG | + | tig0028330:27926-27945 | Msa1437560:intron | 25.0% |
| ! | AAACTACAACGCAATTAAAA+TGG | - | tig0028330:28062-28081 | None:intergenic | 25.0% |
| !!! | GTTGCTGTTTTTTATGTTAA+TGG | + | tig0028330:28280-28299 | Msa1437560:intron | 25.0% |
| !!! | CTGTTTTTTATGTTAATGGA+AGG | + | tig0028330:28284-28303 | Msa1437560:intron | 25.0% |
| ! | AGATAGTAGTTTTCCCAATA+TGG | + | tig0028330:26138-26157 | Msa1437560:CDS | 30.0% |
| CTGATAAACTTACAAATGAG+TGG | + | tig0028330:26615-26634 | Msa1437560:intron | 30.0% | |
| GATAAACTTACAAATGAGTG+GGG | + | tig0028330:26617-26636 | Msa1437560:intron | 30.0% | |
| AAACCAATCATTTGGATAAC+TGG | - | tig0028330:27114-27133 | None:intergenic | 30.0% | |
| !!! | GTTATCCAAATGATTGGTTT+TGG | + | tig0028330:27114-27133 | Msa1437560:intron | 30.0% |
| TGACAAATCAGCAAAAAAGT+GGG | - | tig0028330:27356-27375 | None:intergenic | 30.0% | |
| TAAAAAAAACTGCAGAAAGG+GGG | + | tig0028330:27526-27545 | Msa1437560:intron | 30.0% | |
| ! | TGAAGAAGAAAGACTTTTAG+TGG | - | tig0028330:27764-27783 | None:intergenic | 30.0% |
| !! | CAATAACAGAATGTTGGTTT+GGG | - | tig0028330:27843-27862 | None:intergenic | 30.0% |
| !!! | CCTTTTTAGATTTTGGGTTT+GGG | - | tig0028330:27914-27933 | None:intergenic | 30.0% |
| CCAAACCCAAAATCTAAAAA+GGG | + | tig0028330:27912-27931 | Msa1437560:intron | 30.0% | |
| CAAACCCAAAATCTAAAAAG+GGG | + | tig0028330:27913-27932 | Msa1437560:intron | 30.0% | |
| AAACCCAAAATCTAAAAAGG+GGG | + | tig0028330:27914-27933 | Msa1437560:intron | 30.0% | |
| ! | TTTCCCCCTTTTTAGATTTT+GGG | - | tig0028330:27920-27939 | None:intergenic | 30.0% |
| ! | TTTTCCCCCTTTTTAGATTT+TGG | - | tig0028330:27921-27940 | None:intergenic | 30.0% |
| ! | CTAAAAAGGGGGAAAATTTT+AGG | + | tig0028330:27925-27944 | Msa1437560:intron | 30.0% |
| ! | GGAAAACTACTATCTGAAAC+GGG | - | tig0028330:26133-26152 | Msa1437550:CDS | 35.0% |
| GGGAAAACTACTATCTGAAA+CGG | - | tig0028330:26134-26153 | Msa1437550:CDS | 35.0% | |
| ! | TAGTAGTTTTCCCAATATGG+AGG | + | tig0028330:26141-26160 | Msa1437560:CDS | 35.0% |
| !! | ATCAGATGGAGGTTTGTTTT+TGG | + | tig0028330:26270-26289 | Msa1437560:intron | 35.0% |
| !! | TCAGATGGAGGTTTGTTTTT+GGG | + | tig0028330:26271-26290 | Msa1437560:intron | 35.0% |
| ATGAACTTGTGCTGAATTGT+TGG | + | tig0028330:26780-26799 | Msa1437560:intron | 35.0% | |
| ! | TTCATCCAGCCTGTTAATTT+TGG | + | tig0028330:27068-27087 | Msa1437560:intron | 35.0% |
| CTCTAACTGCCAAAATTAAC+AGG | - | tig0028330:27080-27099 | None:intergenic | 35.0% | |
| !!! | ATCCAAATGATTGGTTTTGG+CGG | + | tig0028330:27117-27136 | Msa1437560:intron | 35.0% |
| !! | AATATAGCGAGTTTGGGTTT+TGG | + | tig0028330:27263-27282 | Msa1437560:intron | 35.0% |
| GTGACAAATCAGCAAAAAAG+TGG | - | tig0028330:27357-27376 | None:intergenic | 35.0% | |
| ATCTACAATCTCTAACACAC+AGG | + | tig0028330:27634-27653 | Msa1437560:intron | 35.0% | |
| ! | GCAATAACAGAATGTTGGTT+TGG | - | tig0028330:27844-27863 | None:intergenic | 35.0% |
| GTGTTGCAATAACAGAATGT+TGG | - | tig0028330:27849-27868 | None:intergenic | 35.0% | |
| CCCAAACCCAAAATCTAAAA+AGG | + | tig0028330:27911-27930 | Msa1437560:intron | 35.0% | |
| !!! | CCCTTTTTAGATTTTGGGTT+TGG | - | tig0028330:27915-27934 | None:intergenic | 35.0% |
| TGAATGAAGAAGATTGAGGA+TGG | - | tig0028330:28000-28019 | None:intergenic | 35.0% | |
| CAGATGAATGAAGAAGATTG+AGG | - | tig0028330:28004-28023 | None:intergenic | 35.0% | |
| CTACAACGCAATTAAAATGG+TGG | - | tig0028330:28059-28078 | None:intergenic | 35.0% | |
| !! | TGCGTTGTAGTTTTTGTTTG+TGG | + | tig0028330:28069-28088 | Msa1437560:intron | 35.0% |
| !! | GTAGTTTTTGTTTGTGGTGA+AGG | + | tig0028330:28075-28094 | Msa1437560:intron | 35.0% |
| AATCCCAAACCCTAAACTAA+TGG | - | tig0028330:28185-28204 | None:intergenic | 35.0% | |
| CACATGAAGATATGGAGAAA+TGG | + | tig0028330:28310-28329 | Msa1437560:CDS | 35.0% | |
| GATGAGGATGAAGGAAAAAA+TGG | + | tig0028330:28351-28370 | Msa1437560:CDS | 35.0% | |
| GTGGAAGAAGAAGAAGAAAA+GGG | + | tig0028330:28400-28419 | Msa1437560:CDS | 35.0% | |
| AAGAAGAAGAAGAAAAGGGT+TGG | + | tig0028330:28404-28423 | Msa1437560:CDS | 35.0% | |
| CACACAAGAAAAGTCACCAT+CGG | - | tig0028330:26056-26075 | Msa1437550:intron | 40.0% | |
| ! | TGTGTGGAAGATTCTTTTCC+CGG | + | tig0028330:26070-26089 | Msa1437560:CDS | 40.0% |
| AAGCAAACTGCCTCCATATT+GGG | - | tig0028330:26154-26173 | Msa1437550:CDS | 40.0% | |
| CAGTGTATGCTTGTTTGAGT+TGG | + | tig0028330:26439-26458 | Msa1437560:intron | 40.0% | |
| AACTGCCAAAATTAACAGGC+TGG | - | tig0028330:27076-27095 | None:intergenic | 40.0% | |
| ACGCCAGTTATCCAAATGAT+TGG | + | tig0028330:27108-27127 | Msa1437560:intron | 40.0% | |
| AACCGCCAAAACCAATCATT+TGG | - | tig0028330:27122-27141 | None:intergenic | 40.0% | |
| CCAAACTCGCTATATTTGCA+GGG | - | tig0028330:27259-27278 | None:intergenic | 40.0% | |
| CCTGCAAATATAGCGAGTTT+GGG | + | tig0028330:27257-27276 | Msa1437560:intron | 40.0% | |
| !! | TTTTCATGGGTGTGGTTTTG+AGG | - | tig0028330:27668-27687 | None:intergenic | 40.0% |
| ! | GAGATTCATTTTCATGGGTG+TGG | - | tig0028330:27676-27695 | None:intergenic | 40.0% |
| !!! | CTGGGTTTTGGGTTTTGATA+TGG | - | tig0028330:27739-27758 | None:intergenic | 40.0% |
| !! | TTTTAGTGGCACTGGGTTTT+GGG | - | tig0028330:27750-27769 | None:intergenic | 40.0% |
| ! | GAAAGACTTTTAGTGGCACT+GGG | - | tig0028330:27757-27776 | None:intergenic | 40.0% |
| ! | AGAAAGACTTTTAGTGGCAC+TGG | - | tig0028330:27758-27777 | None:intergenic | 40.0% |
| ! | GTGCTTGTTAACTTTGCTTG+TGG | - | tig0028330:27801-27820 | None:intergenic | 40.0% |
| ACAAAGCTAGCACAACAACA+GGG | + | tig0028330:27867-27886 | Msa1437560:intron | 40.0% | |
| !!! | TTTTGGGTTTGGGATGAACT+TGG | - | tig0028330:27904-27923 | None:intergenic | 40.0% |
| ATCGAAGAAGAGGAAGAAAG+GGG | - | tig0028330:27964-27983 | None:intergenic | 40.0% | |
| GATCGAAGAAGAGGAAGAAA+GGG | - | tig0028330:27965-27984 | None:intergenic | 40.0% | |
| AGATCGAAGAAGAGGAAGAA+AGG | - | tig0028330:27966-27985 | None:intergenic | 40.0% | |
| GAAGATGTAGATCGAAGAAG+AGG | - | tig0028330:27974-27993 | None:intergenic | 40.0% | |
| ! | ATGGCAAGGCCATTAGTTTA+GGG | + | tig0028330:28173-28192 | Msa1437560:intron | 40.0% |
| ! | AAGGCCATTAGTTTAGGGTT+TGG | + | tig0028330:28178-28197 | Msa1437560:intron | 40.0% |
| ! | AGGCCATTAGTTTAGGGTTT+GGG | + | tig0028330:28179-28198 | Msa1437560:intron | 40.0% |
| GAAGGTGACACATGAAGATA+TGG | + | tig0028330:28302-28321 | Msa1437560:intron | 40.0% | |
| AGAAATGGCGTGAGTATAAG+TGG | + | tig0028330:28325-28344 | Msa1437560:CDS | 40.0% | |
| TGAGTATAAGTGGATGGATG+AGG | + | tig0028330:28335-28354 | Msa1437560:CDS | 40.0% | |
| GTTGAAACATGTAGTTGTCG+TGG | + | tig0028330:28381-28400 | Msa1437560:CDS | 40.0% | |
| CGTGGAAGAAGAAGAAGAAA+AGG | + | tig0028330:28399-28418 | Msa1437560:CDS | 40.0% | |
| ATGACGCGACATATGGCAAT+GGG | + | tig0028330:25992-26011 | Msa1437560:CDS | 45.0% | |
| TTTGATCCAGTAGCAGAAGG+TGG | + | tig0028330:26016-26035 | Msa1437560:CDS | 45.0% | |
| CAAAAACCACCTTCTGCTAC+TGG | - | tig0028330:26025-26044 | Msa1437550:intron | 45.0% | |
| ! | CGATGGTGACTTTTCTTGTG+TGG | + | tig0028330:26054-26073 | Msa1437560:CDS | 45.0% |
| !! | AGATTCTTTTCCCGGTGTTG+AGG | + | tig0028330:26078-26097 | Msa1437560:CDS | 45.0% |
| AGAAGAAGAAGCCTCAACAC+CGG | - | tig0028330:26092-26111 | Msa1437550:CDS | 45.0% | |
| CAAGCAAACTGCCTCCATAT+TGG | - | tig0028330:26155-26174 | Msa1437550:CDS | 45.0% | |
| ! | CAATATGGAGGCAGTTTGCT+TGG | + | tig0028330:26153-26172 | Msa1437560:CDS | 45.0% |
| TCTGGTGCAGAAGAAGATGA+CGG | + | tig0028330:26235-26254 | Msa1437560:CDS | 45.0% | |
| GGTGGTTGTTGTGAATCAGA+TGG | + | tig0028330:26256-26275 | Msa1437560:CDS | 45.0% | |
| GGTTGTTGTGAATCAGATGG+AGG | + | tig0028330:26259-26278 | Msa1437560:CDS | 45.0% | |
| !!! | TGGAGGTTTGTTTTTGGGTG+AGG | + | tig0028330:26276-26295 | Msa1437560:intron | 45.0% |
| !!! | GGTTTGTTTTTGGGTGAGGA+TGG | + | tig0028330:26280-26299 | Msa1437560:intron | 45.0% |
| !!! | TTGTTTTTGGGTGAGGATGG+AGG | + | tig0028330:26283-26302 | Msa1437560:intron | 45.0% |
| GGAGGATCTTGAGAGTTCTT+TGG | + | tig0028330:26301-26320 | Msa1437560:intron | 45.0% | |
| CCCTGCAAATATAGCGAGTT+TGG | + | tig0028330:27256-27275 | Msa1437560:intron | 45.0% | |
| CCCAAACTCGCTATATTTGC+AGG | - | tig0028330:27260-27279 | None:intergenic | 45.0% | |
| TTGCCATGTGGAGAACATGT+GGG | - | tig0028330:27419-27438 | None:intergenic | 45.0% | |
| ATTGCCATGTGGAGAACATG+TGG | - | tig0028330:27420-27439 | None:intergenic | 45.0% | |
| !! | CTTTTAGTGGCACTGGGTTT+TGG | - | tig0028330:27751-27770 | None:intergenic | 45.0% |
| CACAAAGCTAGCACAACAAC+AGG | + | tig0028330:27866-27885 | Msa1437560:intron | 45.0% | |
| TTCTCCTTCTCCAACTCTCA+TGG | - | tig0028330:28148-28167 | None:intergenic | 45.0% | |
| AGAGTTGGAGAAGGAGAAAC+AGG | + | tig0028330:28150-28169 | Msa1437560:intron | 45.0% | |
| TTGGAGAAGGAGAAACAGGA+TGG | + | tig0028330:28154-28173 | Msa1437560:intron | 45.0% | |
| ! | GATGGCAAGGCCATTAGTTT+AGG | + | tig0028330:28172-28191 | Msa1437560:intron | 45.0% |
| GGATTCAGTTTCGATAGCCA+CGG | + | tig0028330:28200-28219 | Msa1437560:intron | 45.0% | |
| AAACACCAAAGCAATCTCCG+TGG | - | tig0028330:28220-28239 | None:intergenic | 45.0% | |
| ATGGCGTGAGTATAAGTGGA+TGG | + | tig0028330:28329-28348 | Msa1437560:CDS | 45.0% | |
| AAGTGGATGGATGAGGATGA+AGG | + | tig0028330:28342-28361 | Msa1437560:CDS | 45.0% | |
| !!! | TTAAAAAAAAAAATTTTACA+GGG | - | tig0028330:27320-27339 | None:intergenic | 5.0% |
| !!! | TTTAAAAAAAAAAATTTTAC+AGG | - | tig0028330:27321-27340 | None:intergenic | 5.0% |
| ! | GGCTTTGATCCAGTAGCAGA+AGG | + | tig0028330:26013-26032 | Msa1437560:CDS | 50.0% |
| !! | GGTTTTTGTTCCAGTGCCGA+TGG | + | tig0028330:26037-26056 | Msa1437560:CDS | 50.0% |
| AGAAAAGTCACCATCGGCAC+TGG | - | tig0028330:26050-26069 | Msa1437550:intron | 50.0% | |
| GAAGAAGAAGCCTCAACACC+GGG | - | tig0028330:26091-26110 | Msa1437550:CDS | 50.0% | |
| GGCTTCTTCTTCTGCTGTAG+AGG | + | tig0028330:26099-26118 | Msa1437560:CDS | 50.0% | |
| AAGAAACCTGCCTCCACTAC+TGG | - | tig0028330:26196-26215 | Msa1437550:CDS | 50.0% | |
| GGTTTCTTCGATCCAGAAGC+AGG | + | tig0028330:26208-26227 | Msa1437560:CDS | 50.0% | |
| GATCCAGAAGCAGGTTGTTC+TGG | + | tig0028330:26217-26236 | Msa1437560:CDS | 50.0% | |
| TCAGCAAAAAAGTGGGCCCA+GGG | - | tig0028330:27349-27368 | None:intergenic | 50.0% | |
| ATCAGCAAAAAAGTGGGCCC+AGG | - | tig0028330:27350-27369 | None:intergenic | 50.0% | |
| ACAGTCAGCAACTGTCACGT+AGG | - | tig0028330:27387-27406 | None:intergenic | 50.0% | |
| ! | TGTCGTTGCTGTTGAAGTCG+AGG | - | tig0028330:28113-28132 | None:intergenic | 50.0% |
| GAAGGAGAAACAGGATGGCA+AGG | + | tig0028330:28159-28178 | Msa1437560:intron | 50.0% | |
| GATAGCCACGGAGATTGCTT+TGG | + | tig0028330:28212-28231 | Msa1437560:intron | 50.0% | |
| GGGTTGGAGAAGAAGAAGAG+AGG | + | tig0028330:28420-28439 | Msa1437560:CDS | 50.0% | |
| ! | GGAGGCAGTTTGCTTGGTTG+CGG | + | tig0028330:26159-26178 | Msa1437560:CDS | 55.0% |
| !! | GGAGGCATCTTGTCCAGTAG+TGG | + | tig0028330:26180-26199 | Msa1437560:CDS | 55.0% |
| GGCATCTTGTCCAGTAGTGG+AGG | + | tig0028330:26183-26202 | Msa1437560:CDS | 55.0% | |
| ! | TCTTGTCCAGTAGTGGAGGC+AGG | + | tig0028330:26187-26206 | Msa1437560:CDS | 55.0% |
| GCACCAGAACAACCTGCTTC+TGG | - | tig0028330:26223-26242 | Msa1437550:CDS | 55.0% | |
| ! | GGTGCAGAAGAAGATGACGG+TGG | + | tig0028330:26238-26257 | Msa1437560:CDS | 55.0% |
| !! | CGAGTTTGGGTTTTGGTCCC+TGG | + | tig0028330:27270-27289 | Msa1437560:intron | 55.0% |
| CTGCCCACATGTTCTCCACA+TGG | + | tig0028330:27413-27432 | Msa1437560:intron | 55.0% | |
| AACGACGAGGCCATGAGAGT+TGG | + | tig0028330:28135-28154 | Msa1437560:intron | 55.0% | |
| GAGGCCATGAGAGTTGGAGA+AGG | + | tig0028330:28141-28160 | Msa1437560:intron | 55.0% | |
| ! | GGCAGTTTGCTTGGTTGCGG+AGG | + | tig0028330:26162-26181 | Msa1437560:CDS | 60.0% |
| CAGCAACGACACGAACGACG+AGG | + | tig0028330:28122-28141 | Msa1437560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028330 | gene | 25992 | 28458 | 25992 | ID=Msa1437560;Name=Msa1437560 |
| tig0028330 | mRNA | 25992 | 28458 | 25992 | ID=Msa1437560-mRNA-1;Parent=Msa1437560;Name=Msa1437560-mRNA-1;_AED=0.41;_eAED=0.67;_QI=0|0|0|0.66|1|1|3|0|171 |
| tig0028330 | exon | 25992 | 26280 | 25992 | ID=Msa1437560-mRNA-1:exon:10745;Parent=Msa1437560-mRNA-1 |
| tig0028330 | exon | 28079 | 28152 | 28079 | ID=Msa1437560-mRNA-1:exon:10746;Parent=Msa1437560-mRNA-1 |
| tig0028330 | exon | 28306 | 28458 | 28306 | ID=Msa1437560-mRNA-1:exon:10747;Parent=Msa1437560-mRNA-1 |
| tig0028330 | CDS | 25992 | 26280 | 25992 | ID=Msa1437560-mRNA-1:cds;Parent=Msa1437560-mRNA-1 |
| tig0028330 | CDS | 28079 | 28152 | 28079 | ID=Msa1437560-mRNA-1:cds;Parent=Msa1437560-mRNA-1 |
| tig0028330 | CDS | 28306 | 28458 | 28306 | ID=Msa1437560-mRNA-1:cds;Parent=Msa1437560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
