Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007440 | Msa1404610 | 0.819712 | 1.005728e-52 | -8.615850e-47 |
| Msa0036540 | Msa1404610 | 0.810891 | 9.198522e-51 | -8.615850e-47 |
| Msa0087800 | Msa1404610 | 0.824744 | 6.837293e-54 | -8.615850e-47 |
| Msa0089820 | Msa1404610 | 0.805618 | 1.223567e-49 | -8.615850e-47 |
| Msa0090570 | Msa1404610 | 0.805046 | 1.612769e-49 | -8.615850e-47 |
| Msa0109590 | Msa1404610 | 0.805607 | 1.230117e-49 | -8.615850e-47 |
| Msa0118540 | Msa1404610 | 0.808450 | 3.078605e-50 | -8.615850e-47 |
| Msa1355890 | Msa1404610 | 0.819337 | 1.224812e-52 | -8.615850e-47 |
| Msa1358670 | Msa1404610 | 0.805841 | 1.098748e-49 | -8.615850e-47 |
| Msa1381480 | Msa1404610 | 0.822745 | 2.009383e-53 | -8.615850e-47 |
| Msa1390690 | Msa1404610 | 0.805105 | 1.567520e-49 | -8.615850e-47 |
| Msa1390700 | Msa1404610 | 0.833191 | 6.146383e-56 | -8.615850e-47 |
| Msa1392910 | Msa1404610 | 0.823023 | 1.730883e-53 | -8.615850e-47 |
| Msa1395730 | Msa1404610 | 0.803569 | 3.274011e-49 | -8.615850e-47 |
| Msa1403340 | Msa1404610 | 0.808397 | 3.159647e-50 | -8.615850e-47 |
| Msa1404610 | Msa1407190 | 0.804352 | 2.250634e-49 | -8.615850e-47 |
| Msa1404610 | Msa1416370 | 0.826559 | 2.538730e-54 | -8.615850e-47 |
| Msa1404610 | Msa1422810 | 0.805486 | 1.304182e-49 | -8.615850e-47 |
| Msa1404610 | Msa1437560 | 0.909000 | 9.230960e-82 | -8.615850e-47 |
| Msa1404610 | Msa1449340 | -0.802410 | 5.685856e-49 | -8.615850e-47 |
| Msa1404610 | Msa1454450 | 0.821410 | 4.098321e-53 | -8.615850e-47 |
| Msa1404610 | Msa1465570 | 0.813501 | 2.479327e-51 | -8.615850e-47 |
| Msa0610130 | Msa1404610 | 0.813401 | 2.608603e-51 | -8.615850e-47 |
| Msa0617640 | Msa1404610 | 0.809185 | 2.143760e-50 | -8.615850e-47 |
| Msa0638350 | Msa1404610 | 0.823656 | 1.231791e-53 | -8.615850e-47 |
| Msa0638360 | Msa1404610 | 0.817299 | 3.544669e-52 | -8.615850e-47 |
| Msa0642970 | Msa1404610 | 0.801684 | 8.015155e-49 | -8.615850e-47 |
| Msa0643320 | Msa1404610 | 0.802500 | 5.446654e-49 | -8.615850e-47 |
| Msa0682680 | Msa1404610 | 0.827910 | 1.205196e-54 | -8.615850e-47 |
| Msa0683600 | Msa1404610 | 0.807997 | 3.844715e-50 | -8.615850e-47 |
| Msa0698540 | Msa1404610 | 0.804361 | 2.241645e-49 | -8.615850e-47 |
| Msa0698890 | Msa1404610 | 0.805635 | 1.213893e-49 | -8.615850e-47 |
| Msa0703910 | Msa1404610 | 0.801334 | 9.457195e-49 | -8.615850e-47 |
| Msa0705990 | Msa1404610 | 0.805141 | 1.540458e-49 | -8.615850e-47 |
| Msa0711150 | Msa1404610 | 0.808002 | 3.836727e-50 | -8.615850e-47 |
| Msa0751850 | Msa1404610 | 0.808010 | 3.821120e-50 | -8.615850e-47 |
| Msa0822500 | Msa1404610 | 0.800072 | 1.710971e-48 | -8.615850e-47 |
| Msa0826150 | Msa1404610 | 0.817307 | 3.528918e-52 | -8.615850e-47 |
| Msa0831850 | Msa1404610 | 0.810466 | 1.136673e-50 | -8.615850e-47 |
| Msa0183850 | Msa1404610 | 0.821306 | 4.330999e-53 | -8.615850e-47 |
| Msa0187830 | Msa1404610 | 0.801460 | 8.909790e-49 | -8.615850e-47 |
| Msa0204960 | Msa1404610 | 0.801443 | 8.982343e-49 | -8.615850e-47 |
| Msa0209500 | Msa1404610 | 0.825510 | 4.507799e-54 | -8.615850e-47 |
| Msa0229380 | Msa1404610 | 0.803002 | 4.291503e-49 | -8.615850e-47 |
| Msa1231840 | Msa1404610 | 0.804261 | 2.351589e-49 | -8.615850e-47 |
| Msa1232740 | Msa1404610 | 0.815058 | 1.122896e-51 | -8.615850e-47 |
| Msa1243870 | Msa1404610 | 0.806765 | 7.015400e-50 | -8.615850e-47 |
| Msa1270660 | Msa1404610 | 0.821411 | 4.095313e-53 | -8.615850e-47 |
| Msa1296460 | Msa1404610 | -0.812865 | 3.419349e-51 | -8.615850e-47 |
| Msa1298510 | Msa1404610 | 0.808157 | 3.554874e-50 | -8.615850e-47 |
| Msa1305810 | Msa1404610 | 0.813427 | 2.573263e-51 | -8.615850e-47 |
| Msa1307180 | Msa1404610 | 0.806163 | 9.402087e-50 | -8.615850e-47 |
| Msa1313320 | Msa1404610 | 0.816434 | 5.541581e-52 | -8.615850e-47 |
| Msa1316360 | Msa1404610 | 0.808746 | 2.662177e-50 | -8.615850e-47 |
| Msa1329050 | Msa1404610 | -0.804948 | 1.690576e-49 | -8.615850e-47 |
| Msa1332050 | Msa1404610 | 0.818320 | 2.084162e-52 | -8.615850e-47 |
| Msa0365860 | Msa1404610 | 0.809689 | 1.671135e-50 | -8.615850e-47 |
| Msa0381610 | Msa1404610 | -0.807527 | 4.839118e-50 | -8.615850e-47 |
| Msa0382370 | Msa1404610 | 0.815029 | 1.139366e-51 | -8.615850e-47 |
| Msa0387280 | Msa1404610 | 0.809847 | 1.545844e-50 | -8.615850e-47 |
| Msa0432160 | Msa1404610 | 0.805144 | 1.538501e-49 | -8.615850e-47 |
| Msa0450400 | Msa1404610 | -0.808604 | 2.854091e-50 | -8.615850e-47 |
| Msa0457510 | Msa1404610 | 0.809135 | 2.197360e-50 | -8.615850e-47 |
| Msa0476680 | Msa1404610 | 0.812499 | 4.110994e-51 | -8.615850e-47 |
| Msa0481970 | Msa1404610 | 0.817712 | 2.861125e-52 | -8.615850e-47 |
| Msa0994370 | Msa1404610 | 0.817945 | 2.534261e-52 | -8.615850e-47 |
| Msa1011090 | Msa1404610 | 0.806913 | 6.529578e-50 | -8.615850e-47 |
| Msa1025080 | Msa1404610 | 0.800930 | 1.143877e-48 | -8.615850e-47 |
| Msa1034290 | Msa1404610 | 0.804139 | 2.493270e-49 | -8.615850e-47 |
| Msa1054150 | Msa1404610 | -0.804785 | 1.828189e-49 | -8.615850e-47 |
| Msa1063420 | Msa1404610 | 0.820422 | 6.918166e-53 | -8.615850e-47 |
| Msa1063690 | Msa1404610 | 0.802226 | 6.203456e-49 | -8.615850e-47 |
| Msa1064250 | Msa1404610 | 0.822705 | 2.053285e-53 | -8.615850e-47 |
| Msa1068870 | Msa1404610 | 0.802826 | 4.665292e-49 | -8.615850e-47 |
| Msa1072900 | Msa1404610 | 0.802918 | 4.465755e-49 | -8.615850e-47 |
| Msa1076960 | Msa1404610 | 0.821327 | 4.282703e-53 | -8.615850e-47 |
| Msa1089450 | Msa1404610 | 0.809051 | 2.291015e-50 | -8.615850e-47 |
| Msa0241140 | Msa1404610 | 0.813806 | 2.124544e-51 | -8.615850e-47 |
| Msa0257490 | Msa1404610 | 0.803661 | 3.133393e-49 | -8.615850e-47 |
| Msa0259210 | Msa1404610 | 0.835432 | 1.684268e-56 | -8.615850e-47 |
| Msa0259220 | Msa1404610 | 0.812881 | 3.390942e-51 | -8.615850e-47 |
| Msa0271770 | Msa1404610 | 0.801385 | 9.233560e-49 | -8.615850e-47 |
| Msa0281530 | Msa1404610 | 0.802032 | 6.801826e-49 | -8.615850e-47 |
| Msa0296820 | Msa1404610 | 0.819069 | 1.409678e-52 | -8.615850e-47 |
| Msa0317970 | Msa1404610 | 0.832033 | 1.190784e-55 | -8.615850e-47 |
| Msa0319170 | Msa1404610 | 0.803168 | 3.965551e-49 | -8.615850e-47 |
| Msa0336310 | Msa1404610 | 0.828884 | 7.015104e-55 | -8.615850e-47 |
| Msa0336320 | Msa1404610 | 0.850290 | 1.868274e-60 | -8.615850e-47 |
| Msa0343850 | Msa1404610 | 0.803995 | 2.671543e-49 | -8.615850e-47 |
| Msa0347750 | Msa1404610 | 0.804332 | 2.273147e-49 | -8.615850e-47 |
| Msa0363680 | Msa1404610 | 0.800010 | 1.761131e-48 | -8.615850e-47 |
| Msa1111870 | Msa1404610 | 0.817728 | 2.836663e-52 | -8.615850e-47 |
| Msa1122860 | Msa1404610 | 0.820491 | 6.668781e-53 | -8.615850e-47 |
| Msa1133230 | Msa1404610 | 0.803044 | 4.205257e-49 | -8.615850e-47 |
| Msa1137570 | Msa1404610 | 0.801134 | 1.039095e-48 | -8.615850e-47 |
| Msa1163540 | Msa1404610 | 0.824016 | 1.014004e-53 | -8.615850e-47 |
| Msa1175200 | Msa1404610 | 0.812287 | 4.574104e-51 | -8.615850e-47 |
| Msa1177780 | Msa1404610 | 0.809983 | 1.444944e-50 | -8.615850e-47 |
| Msa1210020 | Msa1404610 | 0.805443 | 1.331518e-49 | -8.615850e-47 |
| Msa0485240 | Msa1404610 | 0.802480 | 5.499895e-49 | -8.615850e-47 |
| Msa0510930 | Msa1404610 | 0.822618 | 2.151640e-53 | -8.615850e-47 |
| Msa0517640 | Msa1404610 | 0.805409 | 1.353603e-49 | -8.615850e-47 |
| Msa0521010 | Msa1404610 | 0.815984 | 6.987313e-52 | -8.615850e-47 |
| Msa0521670 | Msa1404610 | 0.818271 | 2.139030e-52 | -8.615850e-47 |
| Msa0521740 | Msa1404610 | 0.849934 | 2.350732e-60 | -8.615850e-47 |
| Msa0534050 | Msa1404610 | 0.809966 | 1.457014e-50 | -8.615850e-47 |
| Msa0544840 | Msa1404610 | 0.801701 | 7.952809e-49 | -8.615850e-47 |
| Msa0545700 | Msa1404610 | 0.820848 | 5.521943e-53 | -8.615850e-47 |
| Msa0547160 | Msa1404610 | 0.802910 | 4.484053e-49 | -8.615850e-47 |
| Msa0549780 | Msa1404610 | 0.801444 | 8.978448e-49 | -8.615850e-47 |
| Msa0580180 | Msa1404610 | 0.802094 | 6.602539e-49 | -8.615850e-47 |
| Msa0844420 | Msa1404610 | 0.811609 | 6.425907e-51 | -8.615850e-47 |
| Msa0853520 | Msa1404610 | 0.812093 | 5.042541e-51 | -8.615850e-47 |
| Msa0866410 | Msa1404610 | 0.801238 | 9.894663e-49 | -8.615850e-47 |
| Msa0890550 | Msa1404610 | 0.830565 | 2.733806e-55 | -8.615850e-47 |
| Msa0894710 | Msa1404610 | 0.806042 | 9.969439e-50 | -8.615850e-47 |
| Msa0903780 | Msa1404610 | 0.800162 | 1.640239e-48 | -8.615850e-47 |
| Msa0927380 | Msa1404610 | 0.801815 | 7.534089e-49 | -8.615850e-47 |
| Msa0942550 | Msa1404610 | -0.808111 | 3.636261e-50 | -8.615850e-47 |
| Msa0944610 | Msa1404610 | 0.820750 | 5.815533e-53 | -8.615850e-47 |
| Msa0969370 | Msa1404610 | 0.807521 | 4.854777e-50 | -8.615850e-47 |
| Msa0974950 | Msa1404610 | 0.823446 | 1.379021e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCAGAACAACCTGCTTC+TGG | 0.307549 | tig0023078:-58905 | Msa1404600:CDS |
| CAAGCAAACTGCCTCCATAT+TGG | 0.309164 | tig0023078:-58837 | Msa1404600:CDS |
| GATCCAGAAGCAGGTTGTTC+TGG | 0.359766 | tig0023078:+58902 | Msa1404610:CDS |
| AAGCAAACTGCCTCCATATT+GGG | 0.368564 | tig0023078:-58836 | Msa1404600:CDS |
| CAATATGGAGGCAGTTTGCT+TGG | 0.417284 | tig0023078:+58838 | Msa1404610:CDS |
| AAGAAACCTGCCTCCACTAC+TGG | 0.419316 | tig0023078:-58878 | Msa1404600:CDS |
| GGGAAAACTACTATCTGAAA+CGG | 0.423786 | tig0023078:-58816 | Msa1404600:CDS |
| GAAGGTGACACATGAAGATA+TGG | 0.435932 | tig0023078:+60995 | Msa1404610:intron |
| TTCTCCTTCTCCAACTCTCA+TGG | 0.449011 | tig0023078:-60839 | None:intergenic |
| CACATGAAGATATGGAGAAA+TGG | 0.463150 | tig0023078:+61003 | Msa1404610:CDS |
| GGAGGCAGTTTGCTTGGTTG+CGG | 0.464987 | tig0023078:+58844 | Msa1404610:CDS |
| GGAAAACTACTATCTGAAAC+GGG | 0.470531 | tig0023078:-58815 | Msa1404600:CDS |
| GGCTTCTTCTTCTGCTGTAG+AGG | 0.482912 | tig0023078:+58784 | Msa1404610:CDS |
| GAAGAAGAAGCCTCAACACC+GGG | 0.484719 | tig0023078:-58773 | Msa1404600:CDS |
| GGTTTCTTCGATCCAGAAGC+AGG | 0.498202 | tig0023078:+58893 | Msa1404610:CDS |
| AAGAAGAAGAAGAAAAGGGT+TGG | 0.500626 | tig0023078:+61097 | Msa1404610:CDS |
| GGCAGTTTGCTTGGTTGCGG+AGG | 0.502566 | tig0023078:+58847 | Msa1404610:CDS |
| TCTTGTCCAGTAGTGGAGGC+AGG | 0.504947 | tig0023078:+58872 | Msa1404610:CDS |
| AAGTGGATGGATGAGGATGA+AGG | 0.510338 | tig0023078:+61035 | Msa1404610:CDS |
| ATGACGCGACATATGGCAAT+GGG | 0.518989 | tig0023078:+58677 | Msa1404610:CDS |
| AGAAAAGTCACCATCGGCAC+TGG | 0.522009 | tig0023078:-58732 | Msa1404600:intron |
| AGAAATGGCGTGAGTATAAG+TGG | 0.558054 | tig0023078:+61018 | Msa1404610:CDS |
| GGGTTGGAGAAGAAGAAGAG+AGG | 0.560132 | tig0023078:+61113 | Msa1404610:CDS |
| AGAAGAAGAAGCCTCAACAC+CGG | 0.569748 | tig0023078:-58774 | Msa1404600:CDS |
| AATGACGCGACATATGGCAA+TGG | 0.595049 | tig0023078:+58676 | None:intergenic |
| GGAGGCATCTTGTCCAGTAG+TGG | 0.600781 | tig0023078:+58865 | Msa1404610:CDS |
| GGCTTTGATCCAGTAGCAGA+AGG | 0.605587 | tig0023078:+58698 | Msa1404610:CDS |
| TGAGTATAAGTGGATGGATG+AGG | 0.608883 | tig0023078:+61028 | Msa1404610:CDS |
| ATGGCGTGAGTATAAGTGGA+TGG | 0.611176 | tig0023078:+61022 | Msa1404610:CDS |
| GGCATCTTGTCCAGTAGTGG+AGG | 0.616320 | tig0023078:+58868 | Msa1404610:CDS |
| TTTGATCCAGTAGCAGAAGG+TGG | 0.621582 | tig0023078:+58701 | Msa1404610:CDS |
| GTTGAAACATGTAGTTGTCG+TGG | 0.639496 | tig0023078:+61074 | Msa1404610:CDS |
| TGTCGTTGCTGTTGAAGTCG+AGG | 0.639549 | tig0023078:-60804 | None:intergenic |
| CACACAAGAAAAGTCACCAT+CGG | 0.640821 | tig0023078:-58738 | Msa1404600:intron |
| GGTTGTTGTGAATCAGATGG+AGG | 0.652209 | tig0023078:+58944 | Msa1404610:CDS |
| GGTGGTTGTTGTGAATCAGA+TGG | 0.659071 | tig0023078:+58941 | Msa1404610:CDS |
| CAGCAACGACACGAACGACG+AGG | 0.669032 | tig0023078:+60816 | Msa1404610:CDS |
| TCTGGTGCAGAAGAAGATGA+CGG | 0.746918 | tig0023078:+58920 | Msa1404610:CDS |
| GGTGCAGAAGAAGATGACGG+TGG | 0.816906 | tig0023078:+58923 | Msa1404610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAATTAAAATTAAT+TGG | - | tig0023078:60206-60225 | None:intergenic | 0.0% |
| !!! | TTTTAAACATTATTAAAAAG+TGG | + | tig0023078:59559-59578 | Msa1404610:intron | 10.0% |
| !!! | AAAAAACAAAAAATTTTACA+GGG | - | tig0023078:60012-60031 | None:intergenic | 10.0% |
| !!! | TAAAAAACAAAAAATTTTAC+AGG | - | tig0023078:60013-60032 | None:intergenic | 10.0% |
| !! | AAATGCTTAAAATTATGATT+GGG | + | tig0023078:59849-59868 | Msa1404610:intron | 15.0% |
| !!! | CAAATTTTTTTTTTTTACCA+GGG | - | tig0023078:59981-60000 | None:intergenic | 15.0% |
| !!! | TCAAATTTTTTTTTTTTACC+AGG | - | tig0023078:59982-60001 | None:intergenic | 15.0% |
| !! | AGATCTTTGAATTAAAATTT+GGG | - | tig0023078:60306-60325 | None:intergenic | 15.0% |
| !!! | ATTAGTTAGTTAGTTAGTTT+TGG | + | tig0023078:59199-59218 | Msa1404610:intron | 20.0% |
| !! | CATATATCAAAACACTAAAA+CGG | - | tig0023078:59719-59738 | None:intergenic | 20.0% |
| !! | GAAATGCTTAAAATTATGAT+TGG | + | tig0023078:59848-59867 | Msa1404610:intron | 20.0% |
| !!! | TTTTAAAAAAAACTGCAGAA+AGG | + | tig0023078:60217-60236 | Msa1404610:intron | 20.0% |
| !! | TTTAAAAAAAACTGCAGAAA+GGG | + | tig0023078:60218-60237 | Msa1404610:intron | 20.0% |
| !! | GATCTTTGAATTAAAATTTG+GGG | - | tig0023078:60305-60324 | None:intergenic | 20.0% |
| !! | CAGATCTTTGAATTAAAATT+TGG | - | tig0023078:60307-60326 | None:intergenic | 20.0% |
| !! | AAAAATAAGATGTAGAAGAT+TGG | - | tig0023078:60721-60740 | None:intergenic | 20.0% |
| ! | TGATAAACTTACAAATGAGT+GGG | + | tig0023078:59301-59320 | Msa1404610:intron | 25.0% |
| ! | TAAGTTTCCGTTTGATATAT+TGG | + | tig0023078:59433-59452 | Msa1404610:intron | 25.0% |
| ! | ACATAGTCCAATATATCAAA+CGG | - | tig0023078:59443-59462 | Msa1404600:intron | 25.0% |
| ! | TGATATATTGGACTATGTTA+TGG | + | tig0023078:59445-59464 | Msa1404610:intron | 25.0% |
| ! | GATATATTGGACTATGTTAT+GGG | + | tig0023078:59446-59465 | Msa1404610:intron | 25.0% |
| ! | AGCTTACAAATCAAACAAAA+AGG | - | tig0023078:59665-59684 | None:intergenic | 25.0% |
| !!! | CAACGTTGATAATTGATTAT+AGG | + | tig0023078:59906-59925 | Msa1404610:intron | 25.0% |
| !! | TATAGGCTAAAATATGCTTT+TGG | + | tig0023078:59923-59942 | Msa1404610:intron | 25.0% |
| ! | TAAATGATATAATTGCCATG+TGG | - | tig0023078:60125-60144 | None:intergenic | 25.0% |
| ! | TTAAAAAAAACTGCAGAAAG+GGG | + | tig0023078:60219-60238 | Msa1404610:intron | 25.0% |
| !! | TTTGTGAGATTCATTTTCAT+GGG | - | tig0023078:60375-60394 | None:intergenic | 25.0% |
| !! | TTTTGTGAGATTCATTTTCA+TGG | - | tig0023078:60376-60395 | None:intergenic | 25.0% |
| !! | TAAAAAGGGGGAAAATTTTA+GGG | + | tig0023078:60620-60639 | Msa1404610:intron | 25.0% |
| ! | AAACTACAACGCAATTAAAA+TGG | - | tig0023078:60756-60775 | None:intergenic | 25.0% |
| !!! | TGTTGCTGTTTTTATGTTAA+TGG | + | tig0023078:60973-60992 | Msa1404610:intron | 25.0% |
| ! | AGATAGTAGTTTTCCCAATA+TGG | + | tig0023078:58823-58842 | Msa1404610:CDS | 30.0% |
| CTGATAAACTTACAAATGAG+TGG | + | tig0023078:59300-59319 | Msa1404610:intron | 30.0% | |
| GATAAACTTACAAATGAGTG+GGG | + | tig0023078:59302-59321 | Msa1404610:intron | 30.0% | |
| AAACCAATCATTTGGATAAC+TGG | - | tig0023078:59805-59824 | None:intergenic | 30.0% | |
| !!! | GTTATCCAAATGATTGGTTT+TGG | + | tig0023078:59805-59824 | Msa1404610:intron | 30.0% |
| !!! | TTGTTTTTTAAAATGGTCCC+TGG | + | tig0023078:60023-60042 | Msa1404610:intron | 30.0% |
| !!! | TGTTTTTTAAAATGGTCCCT+GGG | + | tig0023078:60024-60043 | Msa1404610:intron | 30.0% |
| TGACAAATCAGCAAAAAAGT+GGG | - | tig0023078:60050-60069 | None:intergenic | 30.0% | |
| TAAAAAAAACTGCAGAAAGG+GGG | + | tig0023078:60220-60239 | Msa1404610:intron | 30.0% | |
| ! | TGAAGAAGAAAGACTTTTAG+TGG | - | tig0023078:60458-60477 | None:intergenic | 30.0% |
| !! | CAATAACAGAATGTTGGTTT+GGG | - | tig0023078:60537-60556 | None:intergenic | 30.0% |
| !!! | CCTTTTTAGATTTTGGGTTT+GGG | - | tig0023078:60608-60627 | None:intergenic | 30.0% |
| CCAAACCCAAAATCTAAAAA+GGG | + | tig0023078:60606-60625 | Msa1404610:intron | 30.0% | |
| CAAACCCAAAATCTAAAAAG+GGG | + | tig0023078:60607-60626 | Msa1404610:intron | 30.0% | |
| AAACCCAAAATCTAAAAAGG+GGG | + | tig0023078:60608-60627 | Msa1404610:intron | 30.0% | |
| ! | TTTCCCCCTTTTTAGATTTT+GGG | - | tig0023078:60614-60633 | None:intergenic | 30.0% |
| ! | TTTTCCCCCTTTTTAGATTT+TGG | - | tig0023078:60615-60634 | None:intergenic | 30.0% |
| ! | CTAAAAAGGGGGAAAATTTT+AGG | + | tig0023078:60619-60638 | Msa1404610:intron | 30.0% |
| !!! | GCTGTTTTTATGTTAATGGA+AGG | + | tig0023078:60977-60996 | Msa1404610:intron | 30.0% |
| ! | GGAAAACTACTATCTGAAAC+GGG | - | tig0023078:58818-58837 | Msa1404600:CDS | 35.0% |
| GGGAAAACTACTATCTGAAA+CGG | - | tig0023078:58819-58838 | Msa1404600:CDS | 35.0% | |
| ! | TAGTAGTTTTCCCAATATGG+AGG | + | tig0023078:58826-58845 | Msa1404610:CDS | 35.0% |
| !! | ATCAGATGGAGGTTTGTTTT+TGG | + | tig0023078:58955-58974 | Msa1404610:intron | 35.0% |
| !! | TCAGATGGAGGTTTGTTTTT+GGG | + | tig0023078:58956-58975 | Msa1404610:intron | 35.0% |
| ATGAACTTGTGCTGAATTGT+TGG | + | tig0023078:59471-59490 | Msa1404610:intron | 35.0% | |
| ! | TTCATCCAGCCTGTTAATTT+TGG | + | tig0023078:59759-59778 | Msa1404610:intron | 35.0% |
| CTCTAACTGCCAAAATTAAC+AGG | - | tig0023078:59771-59790 | None:intergenic | 35.0% | |
| !!! | ATCCAAATGATTGGTTTTGG+CGG | + | tig0023078:59808-59827 | Msa1404610:intron | 35.0% |
| !! | AATATAGCGAGTTTGGGTTT+TGG | + | tig0023078:59954-59973 | Msa1404610:intron | 35.0% |
| GTGACAAATCAGCAAAAAAG+TGG | - | tig0023078:60051-60070 | None:intergenic | 35.0% | |
| ATCTACAATCTCTAACACAC+AGG | + | tig0023078:60328-60347 | Msa1404610:intron | 35.0% | |
| ! | GCAATAACAGAATGTTGGTT+TGG | - | tig0023078:60538-60557 | None:intergenic | 35.0% |
| GTGTTGCAATAACAGAATGT+TGG | - | tig0023078:60543-60562 | None:intergenic | 35.0% | |
| CCCAAACCCAAAATCTAAAA+AGG | + | tig0023078:60605-60624 | Msa1404610:intron | 35.0% | |
| !!! | CCCTTTTTAGATTTTGGGTT+TGG | - | tig0023078:60609-60628 | None:intergenic | 35.0% |
| TGAATGAAGAAGATTGAGGA+TGG | - | tig0023078:60694-60713 | None:intergenic | 35.0% | |
| CAGATGAATGAAGAAGATTG+AGG | - | tig0023078:60698-60717 | None:intergenic | 35.0% | |
| CTACAACGCAATTAAAATGG+TGG | - | tig0023078:60753-60772 | None:intergenic | 35.0% | |
| !! | TGCGTTGTAGTTTTTGTTTG+TGG | + | tig0023078:60763-60782 | Msa1404610:intron | 35.0% |
| !! | GTAGTTTTTGTTTGTGGTGA+AGG | + | tig0023078:60769-60788 | Msa1404610:intron | 35.0% |
| AATCCCAAACCCTAAACTAA+TGG | - | tig0023078:60879-60898 | None:intergenic | 35.0% | |
| CACATGAAGATATGGAGAAA+TGG | + | tig0023078:61003-61022 | Msa1404610:CDS | 35.0% | |
| GATGAGGATGAAGGAAAAAA+TGG | + | tig0023078:61044-61063 | Msa1404610:CDS | 35.0% | |
| GTGGAAGAAGAAGAAGAAAA+GGG | + | tig0023078:61093-61112 | Msa1404610:CDS | 35.0% | |
| AAGAAGAAGAAGAAAAGGGT+TGG | + | tig0023078:61097-61116 | Msa1404610:CDS | 35.0% | |
| CACACAAGAAAAGTCACCAT+CGG | - | tig0023078:58741-58760 | Msa1404600:intron | 40.0% | |
| ! | TGTGTGGAAGATTCTTTTCC+CGG | + | tig0023078:58755-58774 | Msa1404610:CDS | 40.0% |
| AAGCAAACTGCCTCCATATT+GGG | - | tig0023078:58839-58858 | Msa1404600:CDS | 40.0% | |
| CAGTGTATGCTTGTTTGAGT+TGG | + | tig0023078:59124-59143 | Msa1404610:intron | 40.0% | |
| AACTGCCAAAATTAACAGGC+TGG | - | tig0023078:59767-59786 | None:intergenic | 40.0% | |
| ACGCCAGTTATCCAAATGAT+TGG | + | tig0023078:59799-59818 | Msa1404610:intron | 40.0% | |
| AACCGCCAAAACCAATCATT+TGG | - | tig0023078:59813-59832 | None:intergenic | 40.0% | |
| CCAAACTCGCTATATTTGCA+GGG | - | tig0023078:59950-59969 | None:intergenic | 40.0% | |
| CCTGCAAATATAGCGAGTTT+GGG | + | tig0023078:59948-59967 | Msa1404610:intron | 40.0% | |
| !! | TTTTCATGGGTGTGGTTTTG+AGG | - | tig0023078:60362-60381 | None:intergenic | 40.0% |
| ! | GAGATTCATTTTCATGGGTG+TGG | - | tig0023078:60370-60389 | None:intergenic | 40.0% |
| !!! | CTGGGTTTTGGGTTTTGATA+TGG | - | tig0023078:60433-60452 | None:intergenic | 40.0% |
| !! | TTTTAGTGGCACTGGGTTTT+GGG | - | tig0023078:60444-60463 | None:intergenic | 40.0% |
| ! | GAAAGACTTTTAGTGGCACT+GGG | - | tig0023078:60451-60470 | None:intergenic | 40.0% |
| ! | AGAAAGACTTTTAGTGGCAC+TGG | - | tig0023078:60452-60471 | None:intergenic | 40.0% |
| ! | GTGCTTGTTAACTTTGCTTG+TGG | - | tig0023078:60495-60514 | None:intergenic | 40.0% |
| ACAAAGCTAGCACAACAACA+GGG | + | tig0023078:60561-60580 | Msa1404610:intron | 40.0% | |
| !!! | TTTTGGGTTTGGGATGAACT+TGG | - | tig0023078:60598-60617 | None:intergenic | 40.0% |
| ATCGAAGAAGAGGAAGAAAG+GGG | - | tig0023078:60658-60677 | None:intergenic | 40.0% | |
| GATCGAAGAAGAGGAAGAAA+GGG | - | tig0023078:60659-60678 | None:intergenic | 40.0% | |
| AGATCGAAGAAGAGGAAGAA+AGG | - | tig0023078:60660-60679 | None:intergenic | 40.0% | |
| GAAGATGTAGATCGAAGAAG+AGG | - | tig0023078:60668-60687 | None:intergenic | 40.0% | |
| ! | ATGGCAAGGCCATTAGTTTA+GGG | + | tig0023078:60867-60886 | Msa1404610:intron | 40.0% |
| ! | AAGGCCATTAGTTTAGGGTT+TGG | + | tig0023078:60872-60891 | Msa1404610:intron | 40.0% |
| ! | AGGCCATTAGTTTAGGGTTT+GGG | + | tig0023078:60873-60892 | Msa1404610:intron | 40.0% |
| GAAGGTGACACATGAAGATA+TGG | + | tig0023078:60995-61014 | Msa1404610:intron | 40.0% | |
| AGAAATGGCGTGAGTATAAG+TGG | + | tig0023078:61018-61037 | Msa1404610:CDS | 40.0% | |
| TGAGTATAAGTGGATGGATG+AGG | + | tig0023078:61028-61047 | Msa1404610:CDS | 40.0% | |
| GTTGAAACATGTAGTTGTCG+TGG | + | tig0023078:61074-61093 | Msa1404610:CDS | 40.0% | |
| CGTGGAAGAAGAAGAAGAAA+AGG | + | tig0023078:61092-61111 | Msa1404610:CDS | 40.0% | |
| ATGACGCGACATATGGCAAT+GGG | + | tig0023078:58677-58696 | Msa1404610:CDS | 45.0% | |
| TTTGATCCAGTAGCAGAAGG+TGG | + | tig0023078:58701-58720 | Msa1404610:CDS | 45.0% | |
| CAAAAACCACCTTCTGCTAC+TGG | - | tig0023078:58710-58729 | Msa1404600:intron | 45.0% | |
| ! | CGATGGTGACTTTTCTTGTG+TGG | + | tig0023078:58739-58758 | Msa1404610:CDS | 45.0% |
| !! | AGATTCTTTTCCCGGTGTTG+AGG | + | tig0023078:58763-58782 | Msa1404610:CDS | 45.0% |
| AGAAGAAGAAGCCTCAACAC+CGG | - | tig0023078:58777-58796 | Msa1404600:CDS | 45.0% | |
| CAAGCAAACTGCCTCCATAT+TGG | - | tig0023078:58840-58859 | Msa1404600:CDS | 45.0% | |
| ! | CAATATGGAGGCAGTTTGCT+TGG | + | tig0023078:58838-58857 | Msa1404610:CDS | 45.0% |
| TCTGGTGCAGAAGAAGATGA+CGG | + | tig0023078:58920-58939 | Msa1404610:CDS | 45.0% | |
| GGTGGTTGTTGTGAATCAGA+TGG | + | tig0023078:58941-58960 | Msa1404610:CDS | 45.0% | |
| GGTTGTTGTGAATCAGATGG+AGG | + | tig0023078:58944-58963 | Msa1404610:CDS | 45.0% | |
| !!! | TGGAGGTTTGTTTTTGGGTG+AGG | + | tig0023078:58961-58980 | Msa1404610:intron | 45.0% |
| !!! | GGTTTGTTTTTGGGTGAGGA+TGG | + | tig0023078:58965-58984 | Msa1404610:intron | 45.0% |
| !!! | TTGTTTTTGGGTGAGGATGG+AGG | + | tig0023078:58968-58987 | Msa1404610:intron | 45.0% |
| GGAGGATCTTGAGAGTTCTT+TGG | + | tig0023078:58986-59005 | Msa1404610:intron | 45.0% | |
| CCCTGCAAATATAGCGAGTT+TGG | + | tig0023078:59947-59966 | Msa1404610:intron | 45.0% | |
| CCCAAACTCGCTATATTTGC+AGG | - | tig0023078:59951-59970 | None:intergenic | 45.0% | |
| TTGCCATGTGGAGAACATGT+GGG | - | tig0023078:60113-60132 | None:intergenic | 45.0% | |
| ATTGCCATGTGGAGAACATG+TGG | - | tig0023078:60114-60133 | None:intergenic | 45.0% | |
| !! | CTTTTAGTGGCACTGGGTTT+TGG | - | tig0023078:60445-60464 | None:intergenic | 45.0% |
| CACAAAGCTAGCACAACAAC+AGG | + | tig0023078:60560-60579 | Msa1404610:intron | 45.0% | |
| TTCTCCTTCTCCAACTCTCA+TGG | - | tig0023078:60842-60861 | None:intergenic | 45.0% | |
| AGAGTTGGAGAAGGAGAAAC+AGG | + | tig0023078:60844-60863 | Msa1404610:intron | 45.0% | |
| TTGGAGAAGGAGAAACAGGA+TGG | + | tig0023078:60848-60867 | Msa1404610:intron | 45.0% | |
| ! | GATGGCAAGGCCATTAGTTT+AGG | + | tig0023078:60866-60885 | Msa1404610:intron | 45.0% |
| GGATTCAGTTTCGATAGCCA+CGG | + | tig0023078:60894-60913 | Msa1404610:intron | 45.0% | |
| AAACACCAAAGCAATCTCCG+TGG | - | tig0023078:60914-60933 | None:intergenic | 45.0% | |
| ATGGCGTGAGTATAAGTGGA+TGG | + | tig0023078:61022-61041 | Msa1404610:CDS | 45.0% | |
| AAGTGGATGGATGAGGATGA+AGG | + | tig0023078:61035-61054 | Msa1404610:CDS | 45.0% | |
| !!! | AAATTTTTTGTTTTTTAAAA+TGG | + | tig0023078:60016-60035 | Msa1404610:intron | 5.0% |
| ! | GGCTTTGATCCAGTAGCAGA+AGG | + | tig0023078:58698-58717 | Msa1404610:CDS | 50.0% |
| !! | GGTTTTTGTTCCAGTGCCGA+TGG | + | tig0023078:58722-58741 | Msa1404610:CDS | 50.0% |
| AGAAAAGTCACCATCGGCAC+TGG | - | tig0023078:58735-58754 | Msa1404600:intron | 50.0% | |
| GAAGAAGAAGCCTCAACACC+GGG | - | tig0023078:58776-58795 | Msa1404600:CDS | 50.0% | |
| GGCTTCTTCTTCTGCTGTAG+AGG | + | tig0023078:58784-58803 | Msa1404610:CDS | 50.0% | |
| AAGAAACCTGCCTCCACTAC+TGG | - | tig0023078:58881-58900 | Msa1404600:CDS | 50.0% | |
| GGTTTCTTCGATCCAGAAGC+AGG | + | tig0023078:58893-58912 | Msa1404610:CDS | 50.0% | |
| GATCCAGAAGCAGGTTGTTC+TGG | + | tig0023078:58902-58921 | Msa1404610:CDS | 50.0% | |
| TCAGCAAAAAAGTGGGCCCA+GGG | - | tig0023078:60043-60062 | None:intergenic | 50.0% | |
| ATCAGCAAAAAAGTGGGCCC+AGG | - | tig0023078:60044-60063 | None:intergenic | 50.0% | |
| ACAGTCAGCAACTGTCACGT+AGG | - | tig0023078:60081-60100 | None:intergenic | 50.0% | |
| ! | TGTCGTTGCTGTTGAAGTCG+AGG | - | tig0023078:60807-60826 | None:intergenic | 50.0% |
| GAAGGAGAAACAGGATGGCA+AGG | + | tig0023078:60853-60872 | Msa1404610:intron | 50.0% | |
| GATAGCCACGGAGATTGCTT+TGG | + | tig0023078:60906-60925 | Msa1404610:intron | 50.0% | |
| GGGTTGGAGAAGAAGAAGAG+AGG | + | tig0023078:61113-61132 | Msa1404610:CDS | 50.0% | |
| ! | GGAGGCAGTTTGCTTGGTTG+CGG | + | tig0023078:58844-58863 | Msa1404610:CDS | 55.0% |
| !! | GGAGGCATCTTGTCCAGTAG+TGG | + | tig0023078:58865-58884 | Msa1404610:CDS | 55.0% |
| GGCATCTTGTCCAGTAGTGG+AGG | + | tig0023078:58868-58887 | Msa1404610:CDS | 55.0% | |
| ! | TCTTGTCCAGTAGTGGAGGC+AGG | + | tig0023078:58872-58891 | Msa1404610:CDS | 55.0% |
| GCACCAGAACAACCTGCTTC+TGG | - | tig0023078:58908-58927 | Msa1404600:CDS | 55.0% | |
| ! | GGTGCAGAAGAAGATGACGG+TGG | + | tig0023078:58923-58942 | Msa1404610:CDS | 55.0% |
| !! | CGAGTTTGGGTTTTGGTCCC+TGG | + | tig0023078:59961-59980 | Msa1404610:intron | 55.0% |
| CTGCCCACATGTTCTCCACA+TGG | + | tig0023078:60107-60126 | Msa1404610:intron | 55.0% | |
| AACGACGAGGCCATGAGAGT+TGG | + | tig0023078:60829-60848 | Msa1404610:intron | 55.0% | |
| GAGGCCATGAGAGTTGGAGA+AGG | + | tig0023078:60835-60854 | Msa1404610:intron | 55.0% | |
| ! | GGCAGTTTGCTTGGTTGCGG+AGG | + | tig0023078:58847-58866 | Msa1404610:CDS | 60.0% |
| CAGCAACGACACGAACGACG+AGG | + | tig0023078:60816-60835 | Msa1404610:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023078 | gene | 58677 | 61151 | 58677 | ID=Msa1404610;Name=Msa1404610 |
| tig0023078 | mRNA | 58677 | 61151 | 58677 | ID=Msa1404610-mRNA-1;Parent=Msa1404610;Name=Msa1404610-mRNA-1;_AED=0.41;_eAED=0.67;_QI=0|0|0|0.66|1|1|3|0|171 |
| tig0023078 | exon | 58677 | 58965 | 58677 | ID=Msa1404610-mRNA-1:exon:23710;Parent=Msa1404610-mRNA-1 |
| tig0023078 | exon | 60773 | 60846 | 60773 | ID=Msa1404610-mRNA-1:exon:23711;Parent=Msa1404610-mRNA-1 |
| tig0023078 | exon | 60999 | 61151 | 60999 | ID=Msa1404610-mRNA-1:exon:23712;Parent=Msa1404610-mRNA-1 |
| tig0023078 | CDS | 58677 | 58965 | 58677 | ID=Msa1404610-mRNA-1:cds;Parent=Msa1404610-mRNA-1 |
| tig0023078 | CDS | 60773 | 60846 | 60773 | ID=Msa1404610-mRNA-1:cds;Parent=Msa1404610-mRNA-1 |
| tig0023078 | CDS | 60999 | 61151 | 60999 | ID=Msa1404610-mRNA-1:cds;Parent=Msa1404610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
