AlfalfaGEDB | MS.gene008572

M. sativa cultivar XinJiangDaYe / MS.gene008572

KEGG: K20240
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747
PFAM: PF02458.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008572.t1	RHN67803.1	90.7	464	38	3	1	462	47	507	5.40E-239	836.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008572.t1	Q8GYW8	38.2	463	256	13	8	460	11	453	4.4e-72	273.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008572.t1	A0A396ITJ2	90.7	464	38	3	1	462	47	507	3.9e-239	836.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene069321	MS.gene008572	PPI
MS.gene38361	MS.gene008572	PPI
MS.gene03202	MS.gene008572	PPI
MS.gene008572	MS.gene000763	PPI
MS.gene046246	MS.gene008572	PPI
MS.gene008572	MS.gene38702	PPI
MS.gene38700	MS.gene008572	PPI
MS.gene008572	MS.gene56798	PPI
MS.gene012960	MS.gene008572	PPI
MS.gene38365	MS.gene008572	PPI
MS.gene011798	MS.gene008572	PPI
MS.gene012965	MS.gene008572	PPI
MS.gene008572	MS.gene50384	PPI
MS.gene008572	MS.gene066658	PPI
MS.gene32261	MS.gene008572	PPI
MS.gene008572	MS.gene87496	PPI
MS.gene008572	MS.gene070019	PPI
MS.gene012957	MS.gene008572	PPI
MS.gene99219	MS.gene008572	PPI
MS.gene008572	MS.gene012961	PPI
MS.gene56795	MS.gene008572	PPI
MS.gene066657	MS.gene008572	PPI
MS.gene008572	MS.gene56799	PPI
MS.gene008572	MS.gene069767	PPI
MS.gene50379	MS.gene008572	PPI
MS.gene008572	MS.gene28251	PPI
MS.gene008572	MS.gene90491	PPI
MS.gene008572	MS.gene38359	PPI
MS.gene008572	MS.gene016532	PPI
MS.gene90492	MS.gene008572	PPI
MS.gene008572	MS.gene066701	PPI
MS.gene008572	MS.gene50355	PPI
MS.gene008572	MS.gene38703	PPI
MS.gene011837	MS.gene008572	PPI
MS.gene008572	MS.gene039597	PPI
MS.gene95242	MS.gene008572	PPI
MS.gene008572	MS.gene011799	PPI
MS.gene32936	MS.gene008572	PPI
MS.gene008572	MS.gene002544	PPI
MS.gene90496	MS.gene008572	PPI
MS.gene008572	MS.gene50420	PPI
MS.gene008572	MS.gene32933	PPI
MS.gene008572	MS.gene064101	PPI
MS.gene32938	MS.gene008572	PPI
MS.gene008572	MS.gene50356	PPI
MS.gene008572	MS.gene87536	PPI
MS.gene008572	MS.gene56797	PPI
MS.gene38362	MS.gene008572	PPI
MS.gene008572	MS.gene99218	PPI
MS.gene008572	MS.gene38706	PPI
MS.gene011801	MS.gene008572	PPI
MS.gene000764	MS.gene008572	PPI
MS.gene38977	MS.gene008572	PPI
MS.gene008572	MS.gene78818	PPI
MS.gene008572	MS.gene38701	PPI
MS.gene87532	MS.gene008572	PPI
MS.gene99223	MS.gene008572	PPI
MS.gene46265	MS.gene008572	PPI
MS.gene063868	MS.gene008572	PPI
MS.gene008572	MS.gene02573	PPI
MS.gene066634	MS.gene008572	PPI
MS.gene008572	MS.gene87577	PPI
MS.gene99221	MS.gene008572	PPI
MS.gene38363	MS.gene008572	PPI
MS.gene008572	MS.gene38699	PPI
MS.gene32934	MS.gene008572	PPI
MS.gene063865	MS.gene008572	PPI
MS.gene007831	MS.gene008572	PPI
MS.gene008572	MS.gene50382	PPI
MS.gene56796	MS.gene008572	PPI
MS.gene011796	MS.gene008572	PPI
MS.gene87537	MS.gene008572	PPI
MS.gene008572	MS.gene012959	PPI
MS.gene99222	MS.gene008572	PPI
MS.gene008572	MS.gene87191	PPI
MS.gene008572	MS.gene004218	PPI
MS.gene90493	MS.gene008572	PPI
MS.gene032349	MS.gene008572	PPI
MS.gene38704	MS.gene008572	PPI
MS.gene013787	MS.gene008572	PPI
MS.gene066656	MS.gene008572	PPI
MS.gene008572	MS.gene016477	PPI
MS.gene066660	MS.gene008572	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008572.t1	MTR_3g465910	90.889	461	37	3	1	459	1	458	0.0	864
MS.gene008572.t1	MTR_3g465930	87.284	464	57	1	1	462	1	464	0.0	853
MS.gene008572.t1	MTR_3g465950	78.444	450	83	4	1	447	1	439	0.0	711
MS.gene008572.t1	MTR_3g465980	68.240	466	138	6	1	462	1	460	0.0	656
MS.gene008572.t1	MTR_3g465870	70.753	465	93	6	1	462	1	425	0.0	644
MS.gene008572.t1	MTR_3g465990	65.665	466	150	6	1	462	1	460	0.0	641
MS.gene008572.t1	MTR_3g465880	65.466	472	148	9	1	462	1	467	0.0	619
MS.gene008572.t1	MTR_6g053810	59.315	467	177	9	1	459	1	462	0.0	543
MS.gene008572.t1	MTR_4g055170	48.180	467	214	11	7	462	9	458	1.80e-142	416
MS.gene008572.t1	MTR_2g015430	31.004	458	284	17	8	457	2	435	4.36e-60	203
MS.gene008572.t1	MTR_7g027175	31.830	399	231	14	17	403	23	392	3.85e-40	149
MS.gene008572.t1	MTR_1g040175	30.145	345	217	10	10	346	9	337	1.26e-37	143
MS.gene008572.t1	MTR_8g096530	27.371	464	282	16	8	457	5	427	4.18e-37	141
MS.gene008572.t1	MTR_1g081660	26.898	461	299	17	8	459	16	447	4.28e-36	139
MS.gene008572.t1	MTR_3g071320	29.353	402	251	14	10	398	5	386	5.47e-35	135
MS.gene008572.t1	MTR_1g053315	28.046	435	269	17	19	434	30	439	6.78e-35	135
MS.gene008572.t1	MTR_3g098980	28.228	457	278	18	8	453	12	429	2.19e-34	134
MS.gene008572.t1	MTR_7g110610	31.751	337	166	11	17	346	12	291	2.32e-34	132
MS.gene008572.t1	MTR_1g040215	28.329	353	225	10	4	346	3	337	1.25e-33	132
MS.gene008572.t1	MTR_5g076700	26.209	393	261	12	17	401	17	388	1.09e-32	129
MS.gene008572.t1	MTR_7g114520	29.114	395	252	14	17	403	18	392	2.93e-32	128
MS.gene008572.t1	MTR_7g114550	30.164	305	198	7	17	318	17	309	7.89e-32	127
MS.gene008572.t1	MTR_7g114470	26.515	396	261	14	17	403	18	392	4.36e-30	122
MS.gene008572.t1	MTR_7g114490	30.000	310	192	11	17	318	17	309	4.65e-30	122
MS.gene008572.t1	MTR_7g114560	30.065	306	197	9	17	318	17	309	1.53e-29	120
MS.gene008572.t1	MTR_3g112180	25.532	470	258	17	18	454	20	430	1.80e-29	120
MS.gene008572.t1	MTR_1g040315	28.986	345	211	11	17	350	16	337	5.21e-27	112
MS.gene008572.t1	MTR_2g105330	26.733	404	256	15	10	398	3	381	9.46e-27	112
MS.gene008572.t1	MTR_2g064495	26.733	404	256	15	10	398	3	381	6.24e-26	109
MS.gene008572.t1	MTR_8g075610	27.348	362	229	12	17	367	1	339	8.19e-26	109
MS.gene008572.t1	MTR_4g007540	26.722	363	226	11	10	363	3	334	2.93e-24	105
MS.gene008572.t1	MTR_1g040320	24.289	457	283	13	7	459	6	403	2.60e-23	102
MS.gene008572.t1	MTR_4g127650	29.781	319	191	12	18	322	18	317	1.86e-22	100
MS.gene008572.t1	MTR_4g097090	26.879	346	215	10	18	345	17	342	3.24e-22	99.4
MS.gene008572.t1	MTR_3g049150	26.357	387	231	18	18	378	10	368	4.98e-22	98.6
MS.gene008572.t1	MTR_7g086000	29.154	319	197	12	18	321	12	316	1.10e-21	97.8
MS.gene008572.t1	MTR_7g085930	26.471	374	235	15	17	367	13	369	3.59e-21	96.3
MS.gene008572.t1	MTR_1g040195	25.328	458	268	18	17	459	16	414	2.80e-20	93.2
MS.gene008572.t1	MTR_0502s0010	31.602	231	136	9	110	330	2	220	4.70e-20	89.4
MS.gene008572.t1	MTR_4g013050	24.324	407	242	13	18	408	12	368	4.09e-19	89.7
MS.gene008572.t1	MTR_3g102020	28.137	263	163	8	69	319	69	317	2.94e-18	87.4
MS.gene008572.t1	MTR_7g085990	25.401	374	239	13	17	367	9	365	7.53e-18	86.3
MS.gene008572.t1	MTR_3g102010	26.786	280	170	10	61	320	54	318	3.25e-17	84.3
MS.gene008572.t1	MTR_3g101960	28.244	262	164	8	69	319	68	316	4.21e-17	84.0
MS.gene008572.t1	MTR_3g101930	27.018	285	178	10	69	340	70	337	9.88e-15	76.6
MS.gene008572.t1	MTR_3g101970	27.481	262	150	10	70	319	70	303	1.13e-14	76.3
MS.gene008572.t1	MTR_0042s0190	28.415	183	113	6	172	346	1	173	4.03e-14	73.2
MS.gene008572.t1	MTR_4g022720	25.182	274	191	6	64	331	50	315	6.32e-14	73.9
MS.gene008572.t1	MTR_3g101900	26.408	284	165	11	69	331	66	326	9.99e-14	73.2
MS.gene008572.t1	MTR_7g114510	27.509	269	167	13	154	409	8	261	1.53e-13	71.6
MS.gene008572.t1	MTR_3g450710	24.233	326	200	13	69	366	65	371	2.31e-12	69.3
MS.gene008572.t1	MTR_7g084910	26.380	326	201	12	17	326	24	326	1.97e-11	66.2
MS.gene008572.t1	MTR_8g041770	25.556	270	181	8	69	331	64	320	2.57e-11	65.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008572.t1	AT5G07080	38.675	468	240	14	8	459	12	448	1.66e-92	288
MS.gene008572.t1	AT2G25150	38.013	463	257	13	8	460	11	453	7.03e-89	279
MS.gene008572.t1	AT3G47170	37.500	472	255	17	10	459	12	465	1.01e-82	263
MS.gene008572.t1	AT2G23510	37.527	461	258	14	8	459	11	450	2.77e-82	261
MS.gene008572.t1	AT1G28680	34.783	460	272	15	6	457	2	441	2.74e-72	235
MS.gene008572.t1	AT1G28680	35.946	370	216	12	10	371	4	360	7.16e-60	201
MS.gene008572.t1	AT3G62160	31.472	394	223	14	16	398	11	368	6.60e-44	159
MS.gene008572.t1	AT3G48720	29.231	455	257	20	17	452	16	424	7.84e-41	151
MS.gene008572.t1	AT5G41040	28.322	459	282	16	8	455	15	437	1.87e-40	150
MS.gene008572.t1	AT5G41040	28.322	459	282	16	8	455	31	453	2.14e-40	150
MS.gene008572.t1	AT3G03480	28.540	459	296	16	7	459	16	448	3.07e-39	147
MS.gene008572.t1	AT5G63560	28.289	456	276	20	8	453	7	421	8.79e-33	129
MS.gene008572.t1	AT5G17540	29.248	359	227	13	7	355	6	347	1.10e-32	129
MS.gene008572.t1	AT1G27620	28.501	407	237	16	11	399	10	380	5.57e-31	124
MS.gene008572.t1	AT2G40230	28.212	397	258	12	10	398	5	382	8.64e-31	124
MS.gene008572.t1	AT1G03390	27.020	396	247	14	20	398	32	402	4.64e-30	122
MS.gene008572.t1	AT5G48930	28.614	339	201	12	8	331	1	313	1.17e-27	115
MS.gene008572.t1	AT2G19070	27.957	465	274	22	18	453	12	444	2.19e-23	102
MS.gene008572.t1	AT5G57840	27.273	385	218	18	8	365	1	350	7.22e-19	89.4
MS.gene008572.t1	AT4G31910	24.760	416	259	20	28	410	29	423	2.96e-18	87.4
MS.gene008572.t1	AT1G24430	27.653	311	181	16	17	318	12	287	1.84e-17	84.7
MS.gene008572.t1	AT1G65450	26.750	400	247	17	12	393	21	392	2.91e-16	81.3
MS.gene008572.t1	AT5G47950	32.323	198	111	8	7	199	3	182	1.74e-12	69.3
MS.gene008572.t1	AT5G23940	26.255	259	177	8	69	318	65	318	5.23e-12	68.2
MS.gene008572.t1	AT5G07860	23.735	257	177	9	69	318	72	316	2.86e-11	65.9
MS.gene008572.t1	AT4G29250	26.124	356	225	14	25	365	30	362	6.05e-11	64.7
MS.gene008572.t1	AT3G26040	23.509	285	185	11	8	286	1	258	6.60e-11	64.7

Find 80 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTATGAAATTGAAGCTTTA+AGG	0.137847	3.3:-54026328	MS.gene008572:CDS
TTTCAGGAAAATTTAGATTT+TGG	0.167927	3.3:-54026515	MS.gene008572:CDS
AAGTTACCCGTTGGTGTTAA+TGG	0.216641	3.3:-54027248	MS.gene008572:CDS
ACTTTACCTAAAGGGTATTA+TGG	0.240183	3.3:-54026758	MS.gene008572:CDS
AGTTTGGGCAATGTTATTAT+TGG	0.245296	3.3:+54028376	None:intergenic
TCATGATCATCAAGTTTATT+AGG	0.262038	3.3:+54026416	None:intergenic
CACAAACTCAATAAACTCTT+TGG	0.322202	3.3:-54026621	MS.gene008572:CDS
CTTTGTGGCGGTTTCACAAT+TGG	0.330589	3.3:-54027214	MS.gene008572:CDS
AATACCAACAGTACAGAATT+TGG	0.333223	3.3:-54027388	MS.gene008572:CDS
CACAGAAATTGCAAAACATT+TGG	0.334670	3.3:-54027299	MS.gene008572:CDS
GGATGGTTTGAGCATGGAAT+TGG	0.352453	3.3:-54026585	MS.gene008572:CDS
GAATTGCCATAATACCCTTT+AGG	0.371067	3.3:+54026752	None:intergenic
TCTAACGGAGTGGAAACATT+TGG	0.373940	3.3:-54026540	MS.gene008572:CDS
CCTTTCTTCTCTTCATTACC+TGG	0.381983	3.3:-54027332	MS.gene008572:CDS
ATCGGTATACATGAACAGTT+TGG	0.382280	3.3:+54028360	None:intergenic
CTAACGGAGTGGAAACATTT+GGG	0.386174	3.3:-54026539	MS.gene008572:CDS
CTAACTCCTCCATCCATTGA+TGG	0.386304	3.3:+54026392	None:intergenic
CTATCAACACTTGACAATAA+AGG	0.389671	3.3:-54028401	MS.gene008572:CDS
AACATAGGCATAGCAGCAAC+AGG	0.398229	3.3:+54026353	None:intergenic
AAATTCTGTACTGTTGGTAT+TGG	0.399692	3.3:+54027390	None:intergenic
ATTATGATACTTTACCTAAA+GGG	0.400601	3.3:-54026766	MS.gene008572:CDS
CATCAATGGATGGAGGAGTT+AGG	0.420940	3.3:-54026391	MS.gene008572:CDS
GGCGGTTTCACAATTGGAAT+GGG	0.421841	3.3:-54027208	MS.gene008572:CDS
CATGCTATTTGTGACGGATT+TGG	0.423939	3.3:-54027178	MS.gene008572:CDS
AGTCTCTTTAATCAGCTTAA+CGG	0.431509	3.3:+54026673	None:intergenic
TTGTCACCATTAACACCAAC+GGG	0.468183	3.3:+54027242	None:intergenic
TCCATGGGACATTGTGGAAA+TGG	0.468394	3.3:+54027046	None:intergenic
TCTTGATATTCCTTCTCCTA+AGG	0.470510	3.3:-54027275	MS.gene008572:CDS
GCAAGCATCTTGCGTGGTGC+AGG	0.470851	3.3:+54026467	None:intergenic
TCCCACACAGGTTTCACTGA+TGG	0.471401	3.3:+54027103	None:intergenic
TGGCGGTTTCACAATTGGAA+TGG	0.475582	3.3:-54027209	MS.gene008572:CDS
GATTATGATACTTTACCTAA+AGG	0.479280	3.3:-54026767	MS.gene008572:CDS
GGTTGCTTTCTCATATTCCA+TGG	0.492823	3.3:+54028493	None:intergenic
TTGCTGCTATGCCTATGTTC+AGG	0.493790	3.3:-54026349	MS.gene008572:CDS
AGAAAGAATACAAGAAGGAG+TGG	0.500364	3.3:+54028424	None:intergenic
TGAATGAAAATGAAAACATA+AGG	0.501906	3.3:-54026910	MS.gene008572:CDS
TCAATTTCATACCTGAACAT+AGG	0.506283	3.3:+54026338	None:intergenic
TTTCTGTGTTAGTATTGTCC+AGG	0.512010	3.3:+54027314	None:intergenic
AGCAACCCTAAGGATTGAAA+AGG	0.513610	3.3:-54028477	MS.gene008572:CDS
TCGGTATACATGAACAGTTT+GGG	0.514380	3.3:+54028361	None:intergenic
GATAGAGAAAGAATACAAGA+AGG	0.520122	3.3:+54028419	None:intergenic
TGAGAAAATACACGTATCAA+TGG	0.524642	3.3:+54026442	None:intergenic
AGCTTAACGGTTTCATAGAG+TGG	0.529369	3.3:+54026686	None:intergenic
CCAGGTAATGAAGAGAAGAA+AGG	0.533118	3.3:+54027332	None:intergenic
TGGTATCAGACGAAACTTGA+CGG	0.543377	3.3:-54026789	MS.gene008572:CDS
CAGGTAATGAAGAGAAGAAA+GGG	0.549845	3.3:+54027333	None:intergenic
AACACCAAATTCTGTACTGT+TGG	0.551157	3.3:+54027384	None:intergenic
GCAGTTGTTGAACTTGCAAG+TGG	0.559166	3.3:-54027136	MS.gene008572:CDS
TGATGATCATGATCCATCAA+TGG	0.560359	3.3:-54026405	MS.gene008572:CDS
GGAAGCTAGTGGTGCAGTAA+CGG	0.562555	3.3:-54026564	MS.gene008572:CDS
TTTCTGTCCATGGGACATTG+TGG	0.573049	3.3:+54027040	None:intergenic
ATGTCACATGCTATTTGTGA+CGG	0.574392	3.3:-54027184	MS.gene008572:CDS
AAGTGCTTGCAGGTTATGTG+TGG	0.575180	3.3:-54026874	MS.gene008572:CDS
ATGGTGACAAAACTTCTTTG+TGG	0.579254	3.3:-54027229	MS.gene008572:CDS
TTGGAGACGAATCAAGAGGA+TGG	0.583764	3.3:-54026602	MS.gene008572:CDS
TCAAGAGGATGGTTTGAGCA+TGG	0.589110	3.3:-54026591	MS.gene008572:CDS
TGGTGCAGTAACGGTTCTAA+CGG	0.589287	3.3:-54026555	MS.gene008572:CDS
TTTGTCACCATTAACACCAA+CGG	0.591114	3.3:+54027241	None:intergenic
ACCATTTCCACAATGTCCCA+TGG	0.598120	3.3:-54027047	MS.gene008572:CDS
AATATGAGAAAGCAACCCTA+AGG	0.607803	3.3:-54028487	MS.gene008572:CDS
TAAGGATAAAAGTTACCCGT+TGG	0.609538	3.3:-54027257	MS.gene008572:CDS
GATCATGATCCATCAATGGA+TGG	0.615987	3.3:-54026401	MS.gene008572:CDS
AAAACTAGTATACCTGCTAG+AGG	0.619040	3.3:+54028248	None:intergenic
CATGAATTGCTGATGATGAT+CGG	0.619995	3.3:+54028342	None:intergenic
AGACTAGTAAGACATGCTGA+TGG	0.623486	3.3:-54027430	MS.gene008572:CDS
ATTCAAAGAAGCGCTGTCGA+AGG	0.626139	3.3:-54028288	MS.gene008572:CDS
GCTTCTTTGAATACATGACA+AGG	0.630468	3.3:+54028299	None:intergenic
CTTCTTTGAATACATGACAA+GGG	0.630974	3.3:+54028300	None:intergenic
GAAAATACACGTATCAATGG+TGG	0.632490	3.3:+54026445	None:intergenic
TGCTTGCAGGTTATGTGTGG+AGG	0.634525	3.3:-54026871	MS.gene008572:CDS
CAGTAACGGTTCTAACGGAG+TGG	0.637528	3.3:-54026550	MS.gene008572:CDS
GCGGTTTCACAATTGGAATG+GGG	0.646801	3.3:-54027207	MS.gene008572:CDS
CTCTTTGGAGACGAATCAAG+AGG	0.650080	3.3:-54026606	MS.gene008572:CDS
GTGACAAAACTTCTTTGTGG+CGG	0.650999	3.3:-54027226	MS.gene008572:CDS
CATGATCCATCAATGGATGG+AGG	0.654646	3.3:-54026398	MS.gene008572:CDS
ACATAGGCATAGCAGCAACA+GGG	0.673752	3.3:+54026354	None:intergenic
AGCCATCAGTGAAACCTGTG+TGG	0.685980	3.3:-54027105	MS.gene008572:CDS
GCCATCAGTGAAACCTGTGT+GGG	0.717270	3.3:-54027104	MS.gene008572:CDS
ATGGTGGCAAGCATCTTGCG+TGG	0.738709	3.3:+54026461	None:intergenic
AGCATGGAATTGGAAGCTAG+TGG	0.746349	3.3:-54026575	MS.gene008572:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAATTAATATATATGTAG+CGG	-	chr3.3:54027162-54027181	MS.gene008572:CDS	10.0%
!!	TAAATATAGTTCATATATTA+TGG	-	chr3.3:54027048-54027067	MS.gene008572:CDS	10.0%
!!!	CTTAAATAAAGTTTATTTTA+TGG	+	chr3.3:54026628-54026647	None:intergenic	10.0%
!!!	TGAAAAAAATTGTTTTATTT+AGG	+	chr3.3:54026808-54026827	None:intergenic	10.0%
!!	AAAAGACTAATAATTACTAT+CGG	+	chr3.3:54026602-54026621	None:intergenic	15.0%
!!!	ACAATATTGTTTTAAAGTAA+AGG	-	chr3.3:54027841-54027860	MS.gene008572:intron	15.0%
!!!	CAATATTGTTTTAAAGTAAA+GGG	-	chr3.3:54027842-54027861	MS.gene008572:intron	15.0%
!!	ATTATGATACTTTACCTAAA+GGG	-	chr3.3:54028041-54028060	MS.gene008572:intron	20.0%
!!	TGAATGAAAATGAAAACATA+AGG	-	chr3.3:54027897-54027916	MS.gene008572:intron	20.0%
!!!	ACCTCTAAAGTAAAAAATAT+AGG	+	chr3.3:54027197-54027216	None:intergenic	20.0%
!!!	AGTATTATTTTGATTCACAA+AGG	+	chr3.3:54027810-54027829	None:intergenic	20.0%
!!!	GTATTATTTTGATTCACAAA+GGG	+	chr3.3:54027809-54027828	None:intergenic	20.0%
!!!	TCCTATATTTTTTACTTTAG+AGG	-	chr3.3:54027193-54027212	MS.gene008572:CDS	20.0%
!!!	TTAGAAATGTTGATCATTTT+GGG	-	chr3.3:54026969-54026988	MS.gene008572:CDS	20.0%
!!!	TTTAGAAATGTTGATCATTT+TGG	-	chr3.3:54026968-54026987	MS.gene008572:CDS	20.0%
!!!	TTTCAGGAAAATTTAGATTT+TGG	-	chr3.3:54028292-54028311	MS.gene008572:CDS	20.0%
!	GATTATGATACTTTACCTAA+AGG	-	chr3.3:54028040-54028059	MS.gene008572:intron	25.0%
!	TCATGATCATCAAGTTTATT+AGG	+	chr3.3:54028394-54028413	None:intergenic	25.0%
!!	TAAAACAACTTTTGCATCTA+TGG	+	chr3.3:54028083-54028102	None:intergenic	25.0%
!!!	ACAATGCTAAATGTTTTAGT+TGG	-	chr3.3:54027998-54028017	MS.gene008572:intron	25.0%
	AAATTCTGTACTGTTGGTAT+TGG	+	chr3.3:54027420-54027439	None:intergenic	30.0%
	AATACCAACAGTACAGAATT+TGG	-	chr3.3:54027419-54027438	MS.gene008572:CDS	30.0%
	AGTCTCTTTAATCAGCTTAA+CGG	+	chr3.3:54028137-54028156	None:intergenic	30.0%
	AGTTTGGGCAATGTTATTAT+TGG	+	chr3.3:54026434-54026453	None:intergenic	30.0%
	CACAAACTCAATAAACTCTT+TGG	-	chr3.3:54028186-54028205	MS.gene008572:intron	30.0%
	CACAGAAATTGCAAAACATT+TGG	-	chr3.3:54027508-54027527	MS.gene008572:intron	30.0%
	CTATCAACACTTGACAATAA+AGG	-	chr3.3:54026406-54026425	MS.gene008572:CDS	30.0%
	CTTCTTTGAATACATGACAA+GGG	+	chr3.3:54026510-54026529	None:intergenic	30.0%
	GATAGAGAAAGAATACAAGA+AGG	+	chr3.3:54026391-54026410	None:intergenic	30.0%
	GGTATGAAATTGAAGCTTTA+AGG	-	chr3.3:54028479-54028498	MS.gene008572:CDS	30.0%
	TAATATATATGTAGCGGTGT+CGG	-	chr3.3:54027168-54027187	MS.gene008572:CDS	30.0%
	TCAATTTCATACCTGAACAT+AGG	+	chr3.3:54028472-54028491	None:intergenic	30.0%
	TGAGAAAATACACGTATCAA+TGG	+	chr3.3:54028368-54028387	None:intergenic	30.0%
!	ATCTTCCTTTTCAATCCTTA+GGG	+	chr3.3:54026338-54026357	None:intergenic	30.0%
!	CAGGAAAATTTAGATTTTGG+AGG	-	chr3.3:54028295-54028314	MS.gene008572:CDS	30.0%
!	TAACTTTTATCCTTAGGAGA+AGG	+	chr3.3:54027545-54027564	None:intergenic	30.0%
!	TTTTACTATTATCCTCTAGC+AGG	-	chr3.3:54026547-54026566	MS.gene008572:CDS	30.0%
!!	ACTTTACCTAAAGGGTATTA+TGG	-	chr3.3:54028049-54028068	MS.gene008572:intron	30.0%
!!!	AGAATTTGGTGTTCCATTTT+TGG	-	chr3.3:54027433-54027452	MS.gene008572:CDS	30.0%
!!!	GAACTTTTTTTCTTCTCTCT+TGG	-	chr3.3:54026910-54026929	MS.gene008572:CDS	30.0%
!!!	TTGTTGTTTGCTTGTTTTGT+AGG	-	chr3.3:54027353-54027372	MS.gene008572:CDS	30.0%
	AAAACTAGTATACCTGCTAG+AGG	+	chr3.3:54026562-54026581	None:intergenic	35.0%
	AACACCAAATTCTGTACTGT+TGG	+	chr3.3:54027426-54027445	None:intergenic	35.0%
	AATATGAGAAAGCAACCCTA+AGG	-	chr3.3:54026320-54026339	MS.gene008572:CDS	35.0%
	AGAAAGAATACAAGAAGGAG+TGG	+	chr3.3:54026386-54026405	None:intergenic	35.0%
	ATCGGTATACATGAACAGTT+TGG	+	chr3.3:54026450-54026469	None:intergenic	35.0%
	ATGGTGACAAAACTTCTTTG+TGG	-	chr3.3:54027578-54027597	MS.gene008572:intron	35.0%
	CAGGTAATGAAGAGAAGAAA+GGG	+	chr3.3:54027477-54027496	None:intergenic	35.0%
	GAAAATACACGTATCAATGG+TGG	+	chr3.3:54028365-54028384	None:intergenic	35.0%
	GAATTGCCATAATACCCTTT+AGG	+	chr3.3:54028058-54028077	None:intergenic	35.0%
	GCTTCTTTGAATACATGACA+AGG	+	chr3.3:54026511-54026530	None:intergenic	35.0%
	TAAGGATAAAAGTTACCCGT+TGG	-	chr3.3:54027550-54027569	MS.gene008572:intron	35.0%
	TATGACTGTTATACAGGTGT+CGG	+	chr3.3:54026857-54026876	None:intergenic	35.0%
	TCGGTATACATGAACAGTTT+GGG	+	chr3.3:54026449-54026468	None:intergenic	35.0%
	TCTTGATATTCCTTCTCCTA+AGG	-	chr3.3:54027532-54027551	MS.gene008572:intron	35.0%
	TGATGATCATGATCCATCAA+TGG	-	chr3.3:54028402-54028421	MS.gene008572:CDS	35.0%
	TGGGAAAGAGAAAAACAAGT+TGG	-	chr3.3:54027722-54027741	MS.gene008572:intron	35.0%
	TTACTTCAACACTTCTACAC+TGG	-	chr3.3:54026828-54026847	MS.gene008572:CDS	35.0%
	TTAGCAGTTGCTTCCAAAAA+TGG	+	chr3.3:54027449-54027468	None:intergenic	35.0%
	TTTCTGTGTTAGTATTGTCC+AGG	+	chr3.3:54027496-54027515	None:intergenic	35.0%
	TTTGTCACCATTAACACCAA+CGG	+	chr3.3:54027569-54027588	None:intergenic	35.0%
!	AACGGGTAACTTTTATCCTT+AGG	+	chr3.3:54027551-54027570	None:intergenic	35.0%
!	ATGTCACATGCTATTTGTGA+CGG	-	chr3.3:54027623-54027642	MS.gene008572:intron	35.0%
!	CATCTTCCTTTTCAATCCTT+AGG	+	chr3.3:54026339-54026358	None:intergenic	35.0%
!	CATGAATTGCTGATGATGAT+CGG	+	chr3.3:54026468-54026487	None:intergenic	35.0%
!	GTAACAGATTTTCTGTCCAT+GGG	+	chr3.3:54027779-54027798	None:intergenic	35.0%
!	GTCATTGCTGCTAAGTTTTA+AGG	+	chr3.3:54027975-54027994	None:intergenic	35.0%
!	TACAACACGTCTAGTTTAAG+AGG	+	chr3.3:54026712-54026731	None:intergenic	35.0%
!	TGTAACAGATTTTCTGTCCA+TGG	+	chr3.3:54027780-54027799	None:intergenic	35.0%
	AGACTAGTAAGACATGCTGA+TGG	-	chr3.3:54027377-54027396	MS.gene008572:CDS	40.0%
	AGCAACCCTAAGGATTGAAA+AGG	-	chr3.3:54026330-54026349	MS.gene008572:CDS	40.0%
	AGCTTAACGGTTTCATAGAG+TGG	+	chr3.3:54028124-54028143	None:intergenic	40.0%
	ATCCTATGAAGCATAGACTC+CGG	+	chr3.3:54027259-54027278	None:intergenic	40.0%
	CCAGGTAATGAAGAGAAGAA+AGG	+	chr3.3:54027478-54027497	None:intergenic	40.0%
	CCTTTCTTCTCTTCATTACC+TGG	-	chr3.3:54027475-54027494	MS.gene008572:intron	40.0%
	CTAACGGAGTGGAAACATTT+GGG	-	chr3.3:54028268-54028287	MS.gene008572:CDS	40.0%
	GATCATGATCCATCAATGGA+TGG	-	chr3.3:54028406-54028425	MS.gene008572:CDS	40.0%
	GTGACAAAACTTCTTTGTGG+CGG	-	chr3.3:54027581-54027600	MS.gene008572:intron	40.0%
	TCTAACGGAGTGGAAACATT+TGG	-	chr3.3:54028267-54028286	MS.gene008572:CDS	40.0%
	TGGTATCAGACGAAACTTGA+CGG	-	chr3.3:54028018-54028037	MS.gene008572:intron	40.0%
	TTGTCACCATTAACACCAAC+GGG	+	chr3.3:54027568-54027587	None:intergenic	40.0%
!	TGTTTTTCTCTTTCCCACAC+AGG	+	chr3.3:54027719-54027738	None:intergenic	40.0%
!!	AAGTTACCCGTTGGTGTTAA+TGG	-	chr3.3:54027559-54027578	MS.gene008572:intron	40.0%
!!	CAAGAAGGAGTGGATTTTGA+TGG	+	chr3.3:54026376-54026395	None:intergenic	40.0%
!!	CATGCTATTTGTGACGGATT+TGG	-	chr3.3:54027629-54027648	MS.gene008572:intron	40.0%
!!	GTGGAAACATTTGGGTTTTC+AGG	-	chr3.3:54028276-54028295	MS.gene008572:CDS	40.0%
!!!	ACAACTTTTGAAGTGCTTGC+AGG	-	chr3.3:54027923-54027942	MS.gene008572:intron	40.0%
	AACATAGGCATAGCAGCAAC+AGG	+	chr3.3:54028457-54028476	None:intergenic	45.0%
	AAGTGCTTGCAGGTTATGTG+TGG	-	chr3.3:54027933-54027952	MS.gene008572:intron	45.0%
	ACATAGGCATAGCAGCAACA+GGG	+	chr3.3:54028456-54028475	None:intergenic	45.0%
	ACCATTTCCACAATGTCCCA+TGG	-	chr3.3:54027760-54027779	MS.gene008572:intron	45.0%
	ACGTGTCGTATCAGTGTCAT+AGG	+	chr3.3:54026764-54026783	None:intergenic	45.0%
	AGCATGGAATTGGAAGCTAG+TGG	-	chr3.3:54028232-54028251	MS.gene008572:intron	45.0%
	CATCAATGGATGGAGGAGTT+AGG	-	chr3.3:54028416-54028435	MS.gene008572:CDS	45.0%
	CATGATCCATCAATGGATGG+AGG	-	chr3.3:54028409-54028428	MS.gene008572:CDS	45.0%
	CTAACTCCTCCATCCATTGA+TGG	+	chr3.3:54028418-54028437	None:intergenic	45.0%
	CTTTGTGGCGGTTTCACAAT+TGG	-	chr3.3:54027593-54027612	MS.gene008572:intron	45.0%
	GCAGTTGTTGAACTTGCAAG+TGG	-	chr3.3:54027671-54027690	MS.gene008572:intron	45.0%
	GCGGTTTCACAATTGGAATG+GGG	-	chr3.3:54027600-54027619	MS.gene008572:intron	45.0%
	GGATGGTTTGAGCATGGAAT+TGG	-	chr3.3:54028222-54028241	MS.gene008572:intron	45.0%
	GGCGGTTTCACAATTGGAAT+GGG	-	chr3.3:54027599-54027618	MS.gene008572:intron	45.0%
	GGCTCGTATGACTGTTATAC+AGG	+	chr3.3:54026863-54026882	None:intergenic	45.0%
	TCAAGAGGATGGTTTGAGCA+TGG	-	chr3.3:54028216-54028235	MS.gene008572:intron	45.0%
	TCCATGGGACATTGTGGAAA+TGG	+	chr3.3:54027764-54027783	None:intergenic	45.0%
	TGGCGGTTTCACAATTGGAA+TGG	-	chr3.3:54027598-54027617	MS.gene008572:intron	45.0%
	TTGCTGCTATGCCTATGTTC+AGG	-	chr3.3:54028458-54028477	MS.gene008572:CDS	45.0%
	TTGGAGACGAATCAAGAGGA+TGG	-	chr3.3:54028205-54028224	MS.gene008572:intron	45.0%
	TTGTAATGTCCGACATGCGT+CGG	-	chr3.3:54026727-54026746	MS.gene008572:CDS	45.0%
	TTTCTGTCCATGGGACATTG+TGG	+	chr3.3:54027770-54027789	None:intergenic	45.0%
	TTTGTCTGAGTTGTCCGACA+CGG	+	chr3.3:54026884-54026903	None:intergenic	45.0%
!	CTCTTTGGAGACGAATCAAG+AGG	-	chr3.3:54028201-54028220	MS.gene008572:intron	45.0%
!	TGGTGCAGTAACGGTTCTAA+CGG	-	chr3.3:54028252-54028271	MS.gene008572:intron	45.0%
!!	ATTCAAAGAAGCGCTGTCGA+AGG	-	chr3.3:54026519-54026538	MS.gene008572:CDS	45.0%
!!	TATATTAATTTATTTATAGA+CGG	+	chr3.3:54027155-54027174	None:intergenic	5.0%
	AACAGTCATACGAGCCGTGT+CGG	-	chr3.3:54026867-54026886	MS.gene008572:CDS	50.0%
	AGCCATCAGTGAAACCTGTG+TGG	-	chr3.3:54027702-54027721	MS.gene008572:intron	50.0%
	ATGAAGCATAGACTCCGGCA+CGG	+	chr3.3:54027254-54027273	None:intergenic	50.0%
	GCCATCAGTGAAACCTGTGT+GGG	-	chr3.3:54027703-54027722	MS.gene008572:intron	50.0%
	GGAAGCTAGTGGTGCAGTAA+CGG	-	chr3.3:54028243-54028262	MS.gene008572:intron	50.0%
	TCCCACACAGGTTTCACTGA+TGG	+	chr3.3:54027707-54027726	None:intergenic	50.0%
	TGCCGGAGTCTATGCTTCAT+AGG	-	chr3.3:54027254-54027273	MS.gene008572:CDS	50.0%
	TGCTTGCAGGTTATGTGTGG+AGG	-	chr3.3:54027936-54027955	MS.gene008572:intron	50.0%
!	CAGTAACGGTTCTAACGGAG+TGG	-	chr3.3:54028257-54028276	MS.gene008572:intron	50.0%
!!	AAGAGGTGTCTGTGCTTCGT+TGG	+	chr3.3:54026695-54026714	None:intergenic	50.0%
	ATGGTGGCAAGCATCTTGCG+TGG	+	chr3.3:54028349-54028368	None:intergenic	55.0%
	CGCCTGACACGATACTCACA+CGG	+	chr3.3:54027230-54027249	None:intergenic	55.0%
	TGTCGAACACCGACGCATGT+CGG	+	chr3.3:54026739-54026758	None:intergenic	55.0%
!	GTCCGTGTGAGTATCGTGTC+AGG	-	chr3.3:54027225-54027244	MS.gene008572:CDS	55.0%
	GCAAGCATCTTGCGTGGTGC+AGG	+	chr3.3:54028343-54028362	None:intergenic	60.0%
	ATCGTGTCAGGCGTCCGTGC+CGG	-	chr3.3:54027237-54027256	MS.gene008572:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	54026316	54028513	54026316	ID=MS.gene008572
chr3.3	mRNA	54026316	54028513	54026316	ID=MS.gene008572.t1;Parent=MS.gene008572
chr3.3	exon	54028261	54028513	54028261	ID=MS.gene008572.t1.exon1;Parent=MS.gene008572.t1
chr3.3	CDS	54028261	54028513	54028261	ID=cds.MS.gene008572.t1;Parent=MS.gene008572.t1
chr3.3	exon	54026316	54027454	54026316	ID=MS.gene008572.t1.exon2;Parent=MS.gene008572.t1
chr3.3	CDS	54026316	54027454	54026316	ID=cds.MS.gene008572.t1;Parent=MS.gene008572.t1

Gene Sequence

>MS.gene008572

ATGGAATATGAGAAAGCAACCCTAAGGATTGAAAAGGAAGATGTTTTGCTTGTAAAGCCATCAAAATCCACTCCTTCTTGTATTCTTTCTCTATCAACACTTGACAATAAAGGTGCCAATAATAACATTGCCCAAACTGTTCATGTATACCGATCATCATCAGCAATTCATGATTATGATTCTAGTTTCAACCCTTGTCATGTATTCAAAGAAGCGCTGTCGAAGGCTTTGTTTTACTATTATCCTCTAGCAGGTATACTAGTTTTTTTTTCTTTAAGAACAACCGATAGTAATTATTAGTCTTTTTTACCATAAAATAAACTTTATTTAAGTTCTAAAATAAGAAGAGTGCAATCAATTTGTCTATGAGATGTAACCAACGAAGCACAGACACCTCTTAAACTAGACGTGTTGTAATGTCCGACATGCGTCGGTGTTCGACAGTCCTATGACACTGATACGACACGTGTCGAACAACTAATATTGTGTCCTAAATAAAACAATTTTTTTCATTACTTCAACACTTCTACACTGGTGTCCGACACCTGTATAACAGTCATACGAGCCGTGTCGGACAACTCAGACAAATATCTAGAACTTTTTTTCTTCTCTCTTGGATCAACACAACGCAAATATAAGAGTAAAATATATGTTTAGAAATGTTGATCATTTTGGGAGTTATAGAAATTAAAGTTAATTACAATATTTTTAGATTTTTTGATAGTAGATGAATAAATATAGTTCATATATTATGGTATCTTGTTTTAGAACTTTTTTCAAAGAAATAAACTGTTTAAGATAGATGCTTATGTATGTGTTTTGATTTTCATTTTAAACCGTCTATAAATAAATTAATATATATGTAGCGGTGTCGGTGTCCTATATTTTTTACTTTAGAGGTGTCGATTTGTCCGTGTGAGTATCGTGTCAGGCGTCCGTGCCGGAGTCTATGCTTCATAGGATGTAACAAAAAAAAAAAAATTGACTATGAGTTGAAACATCTTGCATCTATATTTTTAAAGTCAACACACATCGATTTGTTGTTTGCTTGTTTTGTAGGTAGACTAGTAAGACATGCTGATGGAAAATTTAGAGTCAATGCCAATACCAACAGTACAGAATTTGGTGTTCCATTTTTGGAAGCAACTGCTAATTGCACCCTTTCTTCTCTTCATTACCTGGACAATACTAACACAGAAATTGCAAAACATTTGGTTCTTGATATTCCTTCTCCTAAGGATAAAAGTTACCCGTTGGTGTTAATGGTGACAAAACTTCTTTGTGGCGGTTTCACAATTGGAATGGGGATGTCACATGCTATTTGTGACGGATTTGGTGCATCACAATTCTTCAAAGCAGTTGTTGAACTTGCAAGTGGAAGAACTGAGCCATCAGTGAAACCTGTGTGGGAAAGAGAAAAACAAGTTGGAACAATAACTACACAACCATTTCCACAATGTCCCATGGACAGAAAATCTGTTACATTTTCACCCTTTGTGAATCAAAATAATACTATGATTATTAAACAATATTGTTTTAAAGTAAAGGGTGAAATGATAACAAGACTTAAGATGAATTTGATGAATGAAAATGAAAACATAAGGTTCACAACTTTTGAAGTGCTTGCAGGTTATGTGTGGAGGTCAAGATCAAGAGCCTTAAAACTTAGCAGCAATGACAAAACAATGCTAAATGTTTTAGTTGGTATCAGACGAAACTTGACGGATTATGATACTTTACCTAAAGGGTATTATGGCAATTCTACCATAGATGCAAAAGTTGTTTTAAAAGTGAGCGACGAAATGCCACTCTATGAAACCGTTAAGCTGATTAAAGAGACTAAAAATATTGCTTTCACTGCTGATTATGTCACAAACTCAATAAACTCTTTGGAGACGAATCAAGAGGATGGTTTGAGCATGGAATTGGAAGCTAGTGGTGCAGTAACGGTTCTAACGGAGTGGAAACATTTGGGTTTTCAGGAAAATTTAGATTTTGGAGGCTATGAATTAGTGAATTTTCTACCTGCACCACGCAAGATGCTTGCCACCATTGATACGTGTATTTTCTCATCTCCTAATAAACTTGATGATCATGATCCATCAATGGATGGAGGAGTTAGGATATTTACATCACTCCCTGTTGCTGCTATGCCTATGTTCAGGTATGAAATTGAAGCTTTAAGGTTTATTTGTTGA

Protein sequence

>MS.gene008572.t1

MEYEKATLRIEKEDVLLVKPSKSTPSCILSLSTLDNKGANNNIAQTVHVYRSSSAIHDYDSSFNPCHVFKEALSKALFYYYPLAGRLVRHADGKFRVNANTNSTEFGVPFLEATANCTLSSLHYLDNTNTEIAKHLVLDIPSPKDKSYPLVLMVTKLLCGGFTIGMGMSHAICDGFGASQFFKAVVELASGRTEPSVKPVWEREKQVGTITTQPFPQCPMDRKSVTFSPFVNQNNTMIIKQYCFKVKGEMITRLKMNLMNENENIRFTTFEVLAGYVWRSRSRALKLSSNDKTMLNVLVGIRRNLTDYDTLPKGYYGNSTIDAKVVLKVSDEMPLYETVKLIKETKNIAFTADYVTNSINSLETNQEDGLSMELEASGAVTVLTEWKHLGFQENLDFGGYELVNFLPAPRKMLATIDTCIFSSPNKLDDHDPSMDGGVRIFTSLPVAAMPMFRYEIEALRFIC