AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50355

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50355.t1 MTR_4g022825 88.329 377 41 1 26 402 57 430 0.0 685
MS.gene50355.t1 MTR_4g022800 67.347 392 123 3 13 402 44 432 0.0 549
MS.gene50355.t1 MTR_4g022670 69.841 378 110 2 26 402 57 431 0.0 545
MS.gene50355.t1 MTR_4g022720 69.841 378 104 3 26 402 57 425 0.0 541
MS.gene50355.t1 MTR_7g026860 69.048 378 110 3 26 402 57 428 0.0 537
MS.gene50355.t1 MTR_3g088420 63.926 377 126 2 26 402 57 423 3.09e-172 488
MS.gene50355.t1 MTR_3g026310 62.500 384 133 4 27 402 58 438 3.77e-165 471
MS.gene50355.t1 MTR_4g022760 58.312 391 115 3 13 402 44 387 2.79e-157 449
MS.gene50355.t1 MTR_8g041770 57.520 379 146 5 26 402 66 431 3.96e-152 437
MS.gene50355.t1 MTR_0190s0020 55.703 377 154 5 26 400 65 430 1.92e-150 433
MS.gene50355.t1 MTR_4g094842 55.500 400 162 6 10 402 48 438 5.36e-143 414
MS.gene50355.t1 MTR_4g094835 55.091 383 152 6 27 402 67 436 2.14e-140 408
MS.gene50355.t1 MTR_4g094832 58.357 353 129 5 56 402 80 420 3.43e-140 407
MS.gene50355.t1 MTR_4g094838 49.386 407 163 7 4 402 51 422 1.88e-126 372
MS.gene50355.t1 MTR_8g079710 51.031 388 164 9 27 402 62 435 7.58e-121 358
MS.gene50355.t1 MTR_4g094828 49.231 390 173 10 27 402 62 440 2.12e-117 349
MS.gene50355.t1 MTR_4g022290 49.616 391 164 11 27 402 63 435 8.04e-113 337
MS.gene50355.t1 MTR_6g016815 47.733 375 120 8 26 400 71 369 2.52e-98 298
MS.gene50355.t1 MTR_8g040780 59.716 211 81 2 196 402 12 222 6.77e-82 251
MS.gene50355.t1 MTR_3g101900 39.410 373 206 9 35 400 77 436 4.77e-79 251
MS.gene50355.t1 MTR_3g101930 37.166 374 216 7 35 400 81 443 1.67e-74 239
MS.gene50355.t1 MTR_3g102020 40.230 348 189 9 59 398 102 438 9.85e-73 234
MS.gene50355.t1 MTR_3g101960 36.765 408 232 11 4 401 51 442 8.11e-72 232
MS.gene50355.t1 MTR_7g026770 59.067 193 50 2 113 304 132 296 1.21e-70 224
MS.gene50355.t1 MTR_3g102010 36.658 401 223 10 4 393 52 432 3.65e-70 228
MS.gene50355.t1 MTR_3g101970 37.076 383 210 9 26 401 71 429 1.80e-69 226
MS.gene50355.t1 MTR_8g040760 54.857 175 67 2 5 179 51 213 3.91e-56 184
MS.gene50355.t1 MTR_7g026850 56.098 164 57 3 4 166 29 178 7.72e-54 177
MS.gene50355.t1 MTR_3g070170 32.143 420 221 12 15 393 55 451 3.08e-52 181
MS.gene50355.t1 MTR_5g081960 30.556 432 223 10 26 400 63 474 3.74e-52 181
MS.gene50355.t1 MTR_6g034495 56.098 164 60 4 1 152 1 164 2.51e-51 170
MS.gene50355.t1 MTR_3g102030 33.427 356 192 9 16 368 7 320 2.60e-51 175
MS.gene50355.t1 MTR_4g015180 31.616 427 213 13 26 393 62 468 4.63e-48 171
MS.gene50355.t1 MTR_6g045553 33.134 335 191 8 89 393 125 456 5.01e-47 167
MS.gene50355.t1 MTR_6g034485 58.209 134 44 2 160 291 2 125 4.80e-46 154
MS.gene50355.t1 MTR_4g094825 58.273 139 45 2 264 400 252 379 1.80e-45 161
MS.gene50355.t1 MTR_4g094825 45.070 142 77 1 29 170 129 269 6.79e-35 133
MS.gene50355.t1 MTR_7g026800 50.299 167 53 3 183 348 19 156 4.64e-39 139
MS.gene50355.t1 MTR_4g022780 49.701 167 54 3 183 348 20 157 1.98e-38 136
MS.gene50355.t1 MTR_7g026830 70.588 85 25 0 53 137 13 97 1.23e-36 129
MS.gene50355.t1 MTR_7g026780 55.000 100 21 2 303 402 26 101 5.55e-26 101
MS.gene50355.t1 MTR_8g075610 27.072 362 224 15 57 400 73 412 2.26e-25 107
MS.gene50355.t1 MTR_3g098980 27.671 365 224 14 45 393 78 418 6.32e-25 106
MS.gene50355.t1 MTR_8g096530 29.430 316 194 11 58 363 86 382 6.63e-24 103
MS.gene50355.t1 MTR_4g007540 27.151 372 225 16 51 399 76 424 2.42e-23 101
MS.gene50355.t1 MTR_2g064495 26.667 360 231 13 51 394 76 418 3.94e-23 100
MS.gene50355.t1 MTR_2g105330 25.831 391 250 14 20 394 52 418 4.59e-23 100
MS.gene50355.t1 MTR_3g026950 27.703 296 152 11 110 364 130 404 1.51e-20 93.6
MS.gene50355.t1 MTR_7g026870 74.074 54 14 0 269 322 98 151 6.81e-20 86.3
MS.gene50355.t1 MTR_7g014250 25.481 416 252 17 15 400 60 447 6.80e-19 88.6
MS.gene50355.t1 MTR_7g014330 25.984 381 231 16 27 377 65 424 1.10e-18 87.8
MS.gene50355.t1 MTR_3g049150 25.177 282 170 8 110 363 131 399 5.77e-18 85.9
MS.gene50355.t1 MTR_7g015860 25.459 381 227 13 17 364 57 413 1.20e-17 84.7
MS.gene50355.t1 MTR_2g089650 25.753 299 193 13 110 389 155 443 1.36e-17 84.7
MS.gene50355.t1 MTR_6g015320 25.641 312 202 10 109 399 142 444 5.04e-17 82.8
MS.gene50355.t1 MTR_7g014200 23.765 425 276 14 7 399 50 458 7.37e-16 79.3
MS.gene50355.t1 MTR_6g015315 24.841 314 205 10 109 400 139 443 1.01e-15 79.0
MS.gene50355.t1 MTR_2g089765 25.773 291 163 8 110 363 160 434 3.40e-15 77.4
MS.gene50355.t1 MTR_4g013050 25.373 335 169 11 59 364 81 363 4.89e-15 76.6
MS.gene50355.t1 MTR_7g014230 25.622 402 223 16 15 377 62 426 1.08e-14 75.9
MS.gene50355.t1 MTR_1g053315 24.847 326 209 14 88 394 138 446 1.33e-14 75.5
MS.gene50355.t1 MTR_3g071320 26.296 270 184 7 59 322 89 349 1.69e-14 75.1
MS.gene50355.t1 MTR_2g089735 27.331 311 189 12 110 396 149 446 5.70e-14 73.6
MS.gene50355.t1 MTR_7g014610 24.356 427 265 16 7 393 49 457 1.30e-13 72.8
MS.gene50355.t1 MTR_3g112180 24.658 365 219 17 59 399 94 426 1.35e-13 72.4
MS.gene50355.t1 MTR_3g086020 24.850 334 213 13 59 385 85 387 1.68e-13 72.0
MS.gene50355.t1 MTR_6g015830 26.923 312 201 10 109 400 147 451 2.68e-13 71.6
MS.gene50355.t1 MTR_7g014360 24.148 352 221 13 33 367 21 343 3.25e-13 70.9
MS.gene50355.t1 MTR_7g026880 69.048 42 13 0 361 402 2 43 3.30e-13 64.3
MS.gene50355.t1 MTR_4g097090 22.626 358 246 11 58 393 92 440 8.05e-13 70.1
MS.gene50355.t1 MTR_6g015850 25.321 312 204 9 109 400 146 448 8.87e-13 70.1
MS.gene50355.t1 MTR_2g089670 25.532 282 163 11 110 363 167 429 1.06e-12 69.7
MS.gene50355.t1 MTR_6g015815 22.540 315 212 10 109 400 146 451 1.13e-12 69.7
MS.gene50355.t1 MTR_7g027175 24.859 354 233 13 59 399 96 429 1.17e-12 69.7
MS.gene50355.t1 MTR_8g012750 24.643 280 180 8 110 363 148 422 1.34e-12 69.3
MS.gene50355.t1 MTR_1g040195 25.000 360 228 15 59 399 69 405 1.39e-12 69.3
MS.gene50355.t1 MTR_7g084940 26.275 255 164 9 52 295 91 332 2.25e-12 68.6
MS.gene50355.t1 MTR_1g040175 26.354 277 178 10 26 295 66 323 1.00e-11 66.6
MS.gene50355.t1 MTR_4g055170 24.839 310 210 10 18 322 64 355 1.67e-11 66.2
MS.gene50355.t1 MTR_7g084910 27.160 243 146 9 52 279 92 318 2.76e-11 65.5
MS.gene50355.t1 MTR_5g090810 24.926 337 204 14 59 364 94 412 7.58e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50355.t1 AT5G67150 43.258 356 181 9 54 399 89 433 6.80e-91 281
MS.gene50355.t1 AT3G50300 42.090 354 185 8 49 393 82 424 8.29e-83 260
MS.gene50355.t1 AT3G50280 37.731 379 218 7 27 398 62 429 6.73e-79 250
MS.gene50355.t1 AT3G50270 36.968 376 219 8 26 393 64 429 9.58e-73 234
MS.gene50355.t1 AT5G67160 38.136 354 194 9 54 399 83 419 1.45e-72 234
MS.gene50355.t1 AT5G42830 36.104 385 223 9 26 400 66 437 1.16e-69 226
MS.gene50355.t1 AT5G07860 37.337 383 213 9 26 400 74 437 1.63e-69 226
MS.gene50355.t1 AT5G38130 36.082 388 221 10 18 393 70 442 6.95e-67 219
MS.gene50355.t1 AT5G07850 37.076 383 220 10 26 400 72 441 2.83e-65 215
MS.gene50355.t1 AT3G50280 39.286 308 172 5 97 398 1 299 3.81e-65 211
MS.gene50355.t1 AT5G07870 37.240 384 224 9 26 400 74 449 2.12e-62 208
MS.gene50355.t1 AT5G01210 34.574 376 192 11 58 393 89 450 8.25e-59 199
MS.gene50355.t1 AT5G23940 36.070 341 207 8 65 399 104 439 1.62e-57 196
MS.gene50355.t1 AT2G39980 33.592 387 190 11 59 393 90 461 5.20e-57 194
MS.gene50355.t1 AT3G50290 40.876 274 148 7 94 361 4 269 2.54e-51 173
MS.gene50355.t1 AT5G48930 27.976 336 194 11 57 369 82 392 8.83e-23 100
MS.gene50355.t1 AT3G29670 26.316 304 196 10 107 393 141 433 9.54e-21 94.0
MS.gene50355.t1 AT3G48720 27.532 316 202 10 58 364 88 385 1.01e-20 94.0
MS.gene50355.t1 AT3G29590 26.603 312 205 11 107 402 138 441 2.42e-20 92.8
MS.gene50355.t1 AT2G19070 24.519 416 250 19 21 400 55 442 1.08e-18 88.2
MS.gene50355.t1 AT5G39050 24.269 342 209 11 94 401 132 457 8.31e-17 82.4
MS.gene50355.t1 AT5G41040 27.726 321 197 15 58 364 96 395 1.42e-16 81.6
MS.gene50355.t1 AT5G41040 27.726 321 197 15 58 364 112 411 1.59e-16 81.6
MS.gene50355.t1 AT3G29680 25.347 288 192 10 121 393 152 431 2.93e-16 80.9
MS.gene50355.t1 AT3G29635 25.566 309 196 10 107 393 142 438 4.52e-16 80.1
MS.gene50355.t1 AT5G39080 25.301 332 203 14 94 393 127 445 5.22e-16 80.1
MS.gene50355.t1 AT5G63560 27.329 322 193 14 58 365 88 382 2.30e-15 77.8
MS.gene50355.t1 AT5G57840 26.161 409 235 18 20 393 46 422 3.05e-15 77.4
MS.gene50355.t1 AT5G61160 21.359 309 222 9 107 401 139 440 1.93e-14 75.1
MS.gene50355.t1 AT1G28680 25.591 254 165 8 121 366 152 389 1.01e-13 72.8
MS.gene50355.t1 AT2G40230 24.606 317 218 11 59 368 89 391 8.55e-13 70.1
MS.gene50355.t1 AT1G78990 25.234 321 206 12 59 364 95 396 1.27e-12 69.7
MS.gene50355.t1 AT5G07080 27.979 193 119 6 111 293 149 331 1.29e-12 69.7
MS.gene50355.t1 AT3G03480 25.000 436 252 21 4 399 39 439 2.11e-12 68.9
MS.gene50355.t1 AT5G16410 24.765 319 208 12 59 364 120 419 8.34e-12 67.0
MS.gene50355.t1 AT1G03390 25.836 329 208 15 84 394 134 444 1.45e-11 66.2
MS.gene50355.t1 AT1G28680 25.373 201 143 5 121 320 152 346 1.57e-11 65.9

Find 75 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCATGGTTTGATGTTTA+TGG 0.113342 4.4:-78597432 MS.gene50355:CDS
GTGTCTTCCTTACAAGATTT+TGG 0.202537 4.4:-78597301 MS.gene50355:CDS
CCATTGCCAGAAGATTATTT+TGG 0.248348 4.4:-78597663 MS.gene50355:CDS
GATGTTTATGGTAATGATTT+TGG 0.308658 4.4:-78597420 MS.gene50355:CDS
TGGTTGGATAAAGTAGAAAT+TGG 0.327409 4.4:+78598464 None:intergenic
GCGCTTAATACGTTCATAAT+AGG 0.328958 4.4:-78597708 MS.gene50355:CDS
AATGTCTTAGCCGTTGAATT+TGG 0.349561 4.4:+78598401 None:intergenic
TTCTTGTGGATCAAGATGTT+TGG 0.349905 4.4:+78597734 None:intergenic
AATGAAAGCTGGGGAGTTGT+TGG 0.360707 4.4:-78597613 MS.gene50355:CDS
GAAACCAACGCTCTAGTGTT+GGG 0.360883 4.4:+78597997 None:intergenic
GGAATGGTTTGTGCCTTTGC+TGG 0.368156 4.4:-78597354 MS.gene50355:CDS
TGAGAAATCCAAGCTTCATT+AGG 0.373854 4.4:-78597497 MS.gene50355:CDS
GCGTTTCCAAAATAATCTTC+TGG 0.379778 4.4:+78597657 None:intergenic
GCCAGCAAGAGGTTCGAAAA+AGG 0.381613 4.4:+78598360 None:intergenic
CTAGCTGACGGCATCTTCAT+AGG 0.398680 4.4:-78598122 MS.gene50355:CDS
GGGAGTTGTTGGAGGAAGGT+GGG 0.400037 4.4:-78597602 MS.gene50355:CDS
GAAACGCGATTATAGGTTGC+GGG 0.410719 4.4:-78597641 MS.gene50355:CDS
ATGGGCTGTTGAATACCATT+TGG 0.419783 4.4:+78597975 None:intergenic
TTTGCCTCCAAAATCTTGTA+AGG 0.427688 4.4:+78597294 None:intergenic
AAACCATGGAGAACTGCTAA+TGG 0.455624 4.4:+78597443 None:intergenic
TTGTTGGAGGAAGGTGGGAT+TGG 0.457605 4.4:-78597597 MS.gene50355:CDS
GGGGAGTTGTTGGAGGAAGG+TGG 0.459892 4.4:-78597603 MS.gene50355:CDS
CGGAGTGGAAATAGAACAAA+TGG 0.464324 4.4:-78597375 MS.gene50355:CDS
TGCGGGTTTAAAATGAAAGC+TGG 0.465815 4.4:-78597624 MS.gene50355:CDS
GGCAATGGTGGAACAAGTCT+TGG 0.472119 4.4:+78597678 None:intergenic
CCAAAATAATCTTCTGGCAA+TGG 0.477773 4.4:+78597663 None:intergenic
GCTGGGGAGTTGTTGGAGGA+AGG 0.483907 4.4:-78597606 MS.gene50355:CDS
AAAACCCACATATGTTCCTT+CGG 0.485243 4.4:-78598228 MS.gene50355:CDS
GAGGAAGGTGGGATTGGTAA+AGG 0.486075 4.4:-78597591 MS.gene50355:CDS
CTATCAAGCCTAATGAAGCT+TGG 0.491157 4.4:+78597489 None:intergenic
GGGGAAAGCCTGTGGCAGTT+CGG 0.491671 4.4:-78597395 MS.gene50355:CDS
GGAAACCAACGCTCTAGTGT+TGG 0.511281 4.4:+78597996 None:intergenic
GCCTTTGCTGGAATAGAAGA+AGG 0.511653 4.4:-78597342 MS.gene50355:CDS
TTCAATCATGTTGTAGCTGA+CGG 0.511810 4.4:-78598092 MS.gene50355:CDS
TATAGTTAAAGGAAATCGTA+TGG 0.515144 4.4:+78597956 None:intergenic
CTAGAGCGTTGGTTTCCAAA+TGG 0.515960 4.4:-78597990 MS.gene50355:CDS
TTTCCACTCCGAACTGCCAC+AGG 0.522499 4.4:+78597387 None:intergenic
TGAATTTGGTCTGATGCTAC+AGG 0.526430 4.4:+78598415 None:intergenic
TGTAAGGAAGACACACTTGA+AGG 0.538009 4.4:+78597310 None:intergenic
TAAAGAATGATTATGAGTCA+TGG 0.538860 4.4:-78597521 MS.gene50355:CDS
GCGGGTTTAAAATGAAAGCT+GGG 0.538973 4.4:-78597623 MS.gene50355:CDS
GTATTAAGCGCATCTTCTTG+TGG 0.540410 4.4:+78597720 None:intergenic
AGGTACATCAAAATCATTGT+TGG 0.540953 4.4:-78598162 MS.gene50355:CDS
GAAAGCTGGGGAGTTGTTGG+AGG 0.541663 4.4:-78597610 MS.gene50355:CDS
TGGCCATTAGCAGTTCTCCA+TGG 0.541677 4.4:-78597446 MS.gene50355:CDS
AAATAATCTTCTGGCAATGG+TGG 0.542517 4.4:+78597666 None:intergenic
GGAAACGCGATTATAGGTTG+CGG 0.544739 4.4:-78597642 MS.gene50355:CDS
TAGTTTGTAACTCCGTTGAA+AGG 0.548129 4.4:+78598188 None:intergenic
TGGAAATAGAACAAATGGAA+TGG 0.553380 4.4:-78597370 MS.gene50355:CDS
ACCTTCTTCTATTCCAGCAA+AGG 0.555908 4.4:+78597341 None:intergenic
AGTAGAAATTGGAGATCCCA+TGG 0.565431 4.4:+78598475 None:intergenic
AAACCAACGCTCTAGTGTTG+GGG 0.569521 4.4:+78597998 None:intergenic
ATGGCATTTCATCAATTCGT+GGG 0.570140 4.4:-78598060 MS.gene50355:CDS
AACAACCGAAGGAACATATG+TGG 0.575430 4.4:+78598223 None:intergenic
ATAGTTAAAGGAAATCGTAT+GGG 0.585010 4.4:+78597957 None:intergenic
CTACAGGATGGTGATAAAGA+AGG 0.592406 4.4:+78598431 None:intergenic
CATGGCATTTCATCAATTCG+TGG 0.610417 4.4:-78598061 MS.gene50355:CDS
CGTGTTCTGTAACTTTGAGA+CGG 0.614788 4.4:+78598338 None:intergenic
ACTTTGAGACGGCCAGCAAG+AGG 0.616523 4.4:+78598349 None:intergenic
TCTGTAACATGCAATAATGC+AGG 0.619827 4.4:-78598302 MS.gene50355:CDS
ATTGTTGGCAGTTCAAGTGA+CGG 0.619862 4.4:-78598147 MS.gene50355:CDS
AACCAACGCTCTAGTGTTGG+GGG 0.632370 4.4:+78597999 None:intergenic
TAGCTGACGGACAGTCCACA+TGG 0.634434 4.4:-78598079 MS.gene50355:CDS
CAAGTGACGGAGCTAGCTGA+CGG 0.639821 4.4:-78598134 MS.gene50355:CDS
CGGGTTTAAAATGAAAGCTG+GGG 0.642028 4.4:-78597622 MS.gene50355:CDS
AAGCCTGTGGCAGTTCGGAG+TGG 0.647498 4.4:-78597390 MS.gene50355:CDS
ACAACCGAAGGAACATATGT+GGG 0.650889 4.4:+78598224 None:intergenic
AACGGAGTTACAAACTACGA+AGG 0.656439 4.4:-78598182 MS.gene50355:CDS
TTACCATAAACATCAAACCA+TGG 0.659822 4.4:+78597429 None:intergenic
TAGCATCAGACCAAATTCAA+CGG 0.663707 4.4:-78598411 MS.gene50355:CDS
AGGTGTAAACTTTATACATG+CGG 0.677512 4.4:-78598282 MS.gene50355:CDS
GCCACAAAAGAATTACTCTG+AGG 0.711684 4.4:-78597931 MS.gene50355:CDS
CGAATTGATGAAATGCCATG+TGG 0.718082 4.4:+78598064 None:intergenic
TTTGGTCTGATGCTACAGGA+TGG 0.756053 4.4:+78598419 None:intergenic
TCGTGGGCTGAAATGTCACG+TGG 0.758657 4.4:-78598044 MS.gene50355:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTAGAGAAGATATTTTTT+TGG + chr4.4:78597966-78597985 None:intergenic 20.0%
! AAAAATTCTATCTATCTGAG+AGG - chr4.4:78597876-78597895 MS.gene50355:CDS 25.0%
! ATAGTTAAAGGAAATCGTAT+GGG + chr4.4:78597803-78597822 None:intergenic 25.0%
! TAAAGAATGATTATGAGTCA+TGG - chr4.4:78598236-78598255 MS.gene50355:CDS 25.0%
! TATAGTTAAAGGAAATCGTA+TGG + chr4.4:78597804-78597823 None:intergenic 25.0%
!!! GATGTTTATGGTAATGATTT+TGG - chr4.4:78598337-78598356 MS.gene50355:CDS 25.0%
!!! TTATGGTAATGATTTTGGAT+GGG - chr4.4:78598342-78598361 MS.gene50355:CDS 25.0%
!!! TTTATGGTAATGATTTTGGA+TGG - chr4.4:78598341-78598360 MS.gene50355:CDS 25.0%
AGGTACATCAAAATCATTGT+TGG - chr4.4:78597595-78597614 MS.gene50355:CDS 30.0%
AGGTGTAAACTTTATACATG+CGG - chr4.4:78597475-78597494 MS.gene50355:CDS 30.0%
CTTTATCCAACCAACAAAAA+AGG - chr4.4:78597303-78597322 MS.gene50355:CDS 30.0%
TGGAAATAGAACAAATGGAA+TGG - chr4.4:78598387-78598406 MS.gene50355:CDS 30.0%
TGGTTGGATAAAGTAGAAAT+TGG + chr4.4:78597296-78597315 None:intergenic 30.0%
TTACCATAAACATCAAACCA+TGG + chr4.4:78598331-78598350 None:intergenic 30.0%
!! TATGGTAATGATTTTGGATG+GGG - chr4.4:78598343-78598362 MS.gene50355:CDS 30.0%
!! TATTTTGGAAACGCGATTAT+AGG - chr4.4:78598109-78598128 MS.gene50355:CDS 30.0%
!! TTTTGTGGCTCTATAGTTAA+AGG + chr4.4:78597815-78597834 None:intergenic 30.0%
!!! ATAAAGAAGGCCTTTTTTGT+TGG + chr4.4:78597316-78597335 None:intergenic 30.0%
!!! CGTTCATTTTTTCCTTTCAA+CGG - chr4.4:78597557-78597576 MS.gene50355:CDS 30.0%
!!! CTTGAGCACTAAGAATTTTT+TGG - chr4.4:78598291-78598310 MS.gene50355:CDS 30.0%
AAAAATGAACGAACAACCGA+AGG + chr4.4:78597548-78597567 None:intergenic 35.0%
AAAACCCACATATGTTCCTT+CGG - chr4.4:78597529-78597548 MS.gene50355:CDS 35.0%
AAATAATCTTCTGGCAATGG+TGG + chr4.4:78598094-78598113 None:intergenic 35.0%
AAGAGGTTCGAAAAAGGAAA+GGG + chr4.4:78597394-78597413 None:intergenic 35.0%
AATGTCTTAGCCGTTGAATT+TGG + chr4.4:78597359-78597378 None:intergenic 35.0%
ATGGCATTTCATCAATTCGT+GGG - chr4.4:78597697-78597716 MS.gene50355:CDS 35.0%
CCAAAATAATCTTCTGGCAA+TGG + chr4.4:78598097-78598116 None:intergenic 35.0%
GCGCTTAATACGTTCATAAT+AGG - chr4.4:78598049-78598068 MS.gene50355:CDS 35.0%
GCGTTTCCAAAATAATCTTC+TGG + chr4.4:78598103-78598122 None:intergenic 35.0%
TAGCATCAGACCAAATTCAA+CGG - chr4.4:78597346-78597365 MS.gene50355:CDS 35.0%
TCTCCATGGTTTGATGTTTA+TGG - chr4.4:78598325-78598344 MS.gene50355:CDS 35.0%
TCTGTAACATGCAATAATGC+AGG - chr4.4:78597455-78597474 MS.gene50355:CDS 35.0%
TGAGAAATCCAAGCTTCATT+AGG - chr4.4:78598260-78598279 MS.gene50355:CDS 35.0%
TTCAATCATGTTGTAGCTGA+CGG - chr4.4:78597665-78597684 MS.gene50355:CDS 35.0%
TTCTTGTGGATCAAGATGTT+TGG + chr4.4:78598026-78598045 None:intergenic 35.0%
TTTGCCTCCAAAATCTTGTA+AGG + chr4.4:78598466-78598485 None:intergenic 35.0%
! AAGGAACATATGTGGGTTTT+AGG + chr4.4:78597529-78597548 None:intergenic 35.0%
! CCATTGCCAGAAGATTATTT+TGG - chr4.4:78598094-78598113 MS.gene50355:CDS 35.0%
! GTGTCTTCCTTACAAGATTT+TGG - chr4.4:78598456-78598475 MS.gene50355:CDS 35.0%
! TAGTTTGTAACTCCGTTGAA+AGG + chr4.4:78597572-78597591 None:intergenic 35.0%
! TCCTCAGAGTAATTCTTTTG+TGG + chr4.4:78597830-78597849 None:intergenic 35.0%
! TCTTCCTTACAAGATTTTGG+AGG - chr4.4:78598459-78598478 MS.gene50355:CDS 35.0%
!! AAGCGCTTTTAACTCATCTT+TGG - chr4.4:78597984-78598003 MS.gene50355:CDS 35.0%
!! ACAAGATTTTGGAGGCAAAT+GGG - chr4.4:78598467-78598486 MS.gene50355:CDS 35.0%
!! TACAAGATTTTGGAGGCAAA+TGG - chr4.4:78598466-78598485 MS.gene50355:CDS 35.0%
AAACCATGGAGAACTGCTAA+TGG + chr4.4:78598317-78598336 None:intergenic 40.0%
AACAACCGAAGGAACATATG+TGG + chr4.4:78597537-78597556 None:intergenic 40.0%
AACGGAGTTACAAACTACGA+AGG - chr4.4:78597575-78597594 MS.gene50355:CDS 40.0%
ACAACCGAAGGAACATATGT+GGG + chr4.4:78597536-78597555 None:intergenic 40.0%
ACCTTCTTCTATTCCAGCAA+AGG + chr4.4:78598419-78598438 None:intergenic 40.0%
ATTGTTGGCAGTTCAAGTGA+CGG - chr4.4:78597610-78597629 MS.gene50355:CDS 40.0%
CAAGAGGTTCGAAAAAGGAA+AGG + chr4.4:78597395-78597414 None:intergenic 40.0%
CATGGCATTTCATCAATTCG+TGG - chr4.4:78597696-78597715 MS.gene50355:CDS 40.0%
CGAATTGATGAAATGCCATG+TGG + chr4.4:78597696-78597715 None:intergenic 40.0%
CGGAGTGGAAATAGAACAAA+TGG - chr4.4:78598382-78598401 MS.gene50355:CDS 40.0%
CTACAGGATGGTGATAAAGA+AGG + chr4.4:78597329-78597348 None:intergenic 40.0%
CTATCAAGCCTAATGAAGCT+TGG + chr4.4:78598271-78598290 None:intergenic 40.0%
GCCACAAAAGAATTACTCTG+AGG - chr4.4:78597826-78597845 MS.gene50355:CDS 40.0%
GTATTAAGCGCATCTTCTTG+TGG + chr4.4:78598040-78598059 None:intergenic 40.0%
TGAATTTGGTCTGATGCTAC+AGG + chr4.4:78597345-78597364 None:intergenic 40.0%
TGTAAGGAAGACACACTTGA+AGG + chr4.4:78598450-78598469 None:intergenic 40.0%
! ATGGGCTGTTGAATACCATT+TGG + chr4.4:78597785-78597804 None:intergenic 40.0%
! CGGGTTTAAAATGAAAGCTG+GGG - chr4.4:78598135-78598154 MS.gene50355:CDS 40.0%
! CGTGTTCTGTAACTTTGAGA+CGG + chr4.4:78597422-78597441 None:intergenic 40.0%
! GCGGGTTTAAAATGAAAGCT+GGG - chr4.4:78598134-78598153 MS.gene50355:CDS 40.0%
! TGCGGGTTTAAAATGAAAGC+TGG - chr4.4:78598133-78598152 MS.gene50355:CDS 40.0%
!!! AGAAGGCCTTTTTTGTTGGT+TGG + chr4.4:78597312-78597331 None:intergenic 40.0%
AAACCAACGCTCTAGTGTTG+GGG + chr4.4:78597762-78597781 None:intergenic 45.0%
AATGAAAGCTGGGGAGTTGT+TGG - chr4.4:78598144-78598163 MS.gene50355:CDS 45.0%
GAAACCAACGCTCTAGTGTT+GGG + chr4.4:78597763-78597782 None:intergenic 45.0%
GAAACGCGATTATAGGTTGC+GGG - chr4.4:78598116-78598135 MS.gene50355:CDS 45.0%
GCCTTTGCTGGAATAGAAGA+AGG - chr4.4:78598415-78598434 MS.gene50355:CDS 45.0%
GGAAACGCGATTATAGGTTG+CGG - chr4.4:78598115-78598134 MS.gene50355:CDS 45.0%
TTTGGTCTGATGCTACAGGA+TGG + chr4.4:78597341-78597360 None:intergenic 45.0%
!! CTAGAGCGTTGGTTTCCAAA+TGG - chr4.4:78597767-78597786 MS.gene50355:CDS 45.0%
!!! TCCTTTTTCGAACCTCTTGC+TGG - chr4.4:78597396-78597415 MS.gene50355:CDS 45.0%
CTAGCTGACGGCATCTTCAT+AGG - chr4.4:78597635-78597654 MS.gene50355:CDS 50.0%
GCCAGCAAGAGGTTCGAAAA+AGG + chr4.4:78597400-78597419 None:intergenic 50.0%
GGAAACCAACGCTCTAGTGT+TGG + chr4.4:78597764-78597783 None:intergenic 50.0%
TGGCCATTAGCAGTTCTCCA+TGG - chr4.4:78598311-78598330 MS.gene50355:CDS 50.0%
TTGTTGGAGGAAGGTGGGAT+TGG - chr4.4:78598160-78598179 MS.gene50355:CDS 50.0%
! AACCAACGCTCTAGTGTTGG+GGG + chr4.4:78597761-78597780 None:intergenic 50.0%
! GAGGAAGGTGGGATTGGTAA+AGG - chr4.4:78598166-78598185 MS.gene50355:CDS 50.0%
! GGAATGGTTTGTGCCTTTGC+TGG - chr4.4:78598403-78598422 MS.gene50355:CDS 50.0%
! GGCAATGGTGGAACAAGTCT+TGG + chr4.4:78598082-78598101 None:intergenic 50.0%
! TTTTGGATGGGGAAAGCCTG+TGG - chr4.4:78598354-78598373 MS.gene50355:CDS 50.0%
AACCCCCAACACTAGAGCGT+TGG - chr4.4:78597756-78597775 MS.gene50355:CDS 55.0%
GAAAGCTGGGGAGTTGTTGG+AGG - chr4.4:78598147-78598166 MS.gene50355:CDS 55.0%
GGGAGTTGTTGGAGGAAGGT+GGG - chr4.4:78598155-78598174 MS.gene50355:CDS 55.0%
TTTCCACTCCGAACTGCCAC+AGG + chr4.4:78598373-78598392 None:intergenic 55.0%
! CAAGTGACGGAGCTAGCTGA+CGG - chr4.4:78597623-78597642 MS.gene50355:CDS 55.0%
! TAGCTGACGGACAGTCCACA+TGG - chr4.4:78597678-78597697 MS.gene50355:CDS 55.0%
! TCGTGGGCTGAAATGTCACG+TGG - chr4.4:78597713-78597732 MS.gene50355:CDS 55.0%
!! ACTTTGAGACGGCCAGCAAG+AGG + chr4.4:78597411-78597430 None:intergenic 55.0%
AAGCCTGTGGCAGTTCGGAG+TGG - chr4.4:78598367-78598386 MS.gene50355:CDS 60.0%
GCTGGGGAGTTGTTGGAGGA+AGG - chr4.4:78598151-78598170 MS.gene50355:CDS 60.0%
GGGGAAAGCCTGTGGCAGTT+CGG - chr4.4:78598362-78598381 MS.gene50355:CDS 60.0%
GGGGAGTTGTTGGAGGAAGG+TGG - chr4.4:78598154-78598173 MS.gene50355:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 78597284 78598495 78597284 ID=MS.gene50355
chr4.4 mRNA 78597284 78598495 78597284 ID=MS.gene50355.t1;Parent=MS.gene50355
chr4.4 exon 78597284 78598495 78597284 ID=MS.gene50355.t1.exon1;Parent=MS.gene50355.t1
chr4.4 CDS 78597284 78598495 78597284 ID=cds.MS.gene50355.t1;Parent=MS.gene50355.t1
Gene Sequence

>MS.gene50355

ATGGGATCTCCAATTTCTACTTTATCCAACCAACAAAAAAGGCCTTCTTTATCACCATCCTGTAGCATCAGACCAAATTCAACGGCTAAGACATTCTCTTTCTTCTGCCCTTTCCTTTTTCGAACCTCTTGCTGGCCGTCTCAAAGTTACAGAACACGCACTGTCTCGTGTTCTGTAACATGCAATAATGCAGGTGTAAACTTTATACATGCGGCAGCAAAGAATACTTGTGTTGCTGACATCCTAAAACCCACATATGTTCCTTCGGTTGTTCGTTCATTTTTTCCTTTCAACGGAGTTACAAACTACGAAGGTACATCAAAATCATTGTTGGCAGTTCAAGTGACGGAGCTAGCTGACGGCATCTTCATAGGCTGTAATTTCAATCATGTTGTAGCTGACGGACAGTCCACATGGCATTTCATCAATTCGTGGGCTGAAATGTCACGTGGTTGTCATCATCAAATATCTAAACCCCCAACACTAGAGCGTTGGTTTCCAAATGGTATTCAACAGCCCATACGATTTCCTTTAACTATAGAGCCACAAAAGAATTACTCTGAGGAGTTGAGTTTTTCGTCATCTGATGACGAAAAATTCTATCTATCTGAGAGGATATTTCACTTCACAAAGAAGAAAATCATGCAATTGAAATCAAAAGTCAACGCAGCGATTGATACCAAAAAAATATCTTCTCTACAAGCGCTTTTAACTCATCTTTGGTGTTCAGTGATTCGTTCCAAACATCTTGATCCACAAGAAGATGCGCTTAATACGTTCATAATAGGAGTTAGACCAAGACTTGTTCCACCATTGCCAGAAGATTATTTTGGAAACGCGATTATAGGTTGCGGGTTTAAAATGAAAGCTGGGGAGTTGTTGGAGGAAGGTGGGATTGGTAAAGGTGCTTTATTGATGAATAAGTTAATTGCTTTGCACTCTAATGAGAAATTAAAGAATGATTATGAGTCATGGTTGAGAAATCCAAGCTTCATTAGGCTTGATAGCTTGAGCACTAAGAATTTTTTGGCCATTAGCAGTTCTCCATGGTTTGATGTTTATGGTAATGATTTTGGATGGGGAAAGCCTGTGGCAGTTCGGAGTGGAAATAGAACAAATGGAATGGTTTGTGCCTTTGCTGGAATAGAAGAAGGTAGCATTGACCTTCAAGTGTGTCTTCCTTACAAGATTTTGGAGGCAAATGGGAAATGA
Protein sequence

>MS.gene50355.t1

MGSPISTLSNQQKRPSLSPSCSIRPNSTAKTFSFFCPFLFRTSCWPSQSYRTRTVSCSVTCNNAGVNFIHAAAKNTCVADILKPTYVPSVVRSFFPFNGVTNYEGTSKSLLAVQVTELADGIFIGCNFNHVVADGQSTWHFINSWAEMSRGCHHQISKPPTLERWFPNGIQQPIRFPLTIEPQKNYSEELSFSSSDDEKFYLSERIFHFTKKKIMQLKSKVNAAIDTKKISSLQALLTHLWCSVIRSKHLDPQEDALNTFIIGVRPRLVPPLPEDYFGNAIIGCGFKMKAGELLEEGGIGKGALLMNKLIALHSNEKLKNDYESWLRNPSFIRLDSLSTKNFLAISSSPWFDVYGNDFGWGKPVAVRSGNRTNGMVCAFAGIEEGSIDLQVCLPYKILEANGK