AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007831

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007831.t1 MTR_0190s0020 93.948 347 21 0 1 347 97 443 0.0 682
MS.gene007831.t1 MTR_8g041770 71.304 345 98 1 2 346 98 441 2.68e-179 504
MS.gene007831.t1 MTR_4g022800 60.784 357 127 4 1 346 88 442 4.54e-156 445
MS.gene007831.t1 MTR_4g094832 61.960 347 123 4 1 342 84 426 4.72e-156 445
MS.gene007831.t1 MTR_4g022670 60.393 356 129 4 1 346 88 441 5.83e-154 440
MS.gene007831.t1 MTR_3g088420 61.671 347 129 3 2 346 89 433 4.86e-153 437
MS.gene007831.t1 MTR_4g022720 60.571 350 132 4 1 346 88 435 5.04e-152 435
MS.gene007831.t1 MTR_7g026860 59.664 357 127 5 1 346 88 438 9.72e-152 434
MS.gene007831.t1 MTR_4g022825 58.989 356 131 5 2 346 89 440 1.43e-151 434
MS.gene007831.t1 MTR_3g026310 58.564 362 131 4 2 346 89 448 1.97e-150 431
MS.gene007831.t1 MTR_4g094835 60.231 347 129 4 1 342 100 442 4.23e-150 430
MS.gene007831.t1 MTR_4g094842 56.522 345 149 1 1 344 102 446 7.71e-142 409
MS.gene007831.t1 MTR_4g094838 55.620 347 129 4 1 342 102 428 2.73e-134 389
MS.gene007831.t1 MTR_4g094828 50.278 360 163 7 1 346 93 450 1.29e-122 360
MS.gene007831.t1 MTR_8g079710 51.724 348 153 7 1 337 93 436 4.22e-121 356
MS.gene007831.t1 MTR_4g022760 51.549 355 118 4 1 346 88 397 5.06e-121 354
MS.gene007831.t1 MTR_4g022290 50.281 356 157 7 1 343 94 442 2.98e-116 344
MS.gene007831.t1 MTR_6g016815 45.115 348 119 7 2 346 103 381 6.85e-91 277
MS.gene007831.t1 MTR_8g040780 58.986 217 86 2 128 341 11 227 7.33e-89 267
MS.gene007831.t1 MTR_3g101900 42.120 349 193 6 3 346 104 448 1.20e-85 266
MS.gene007831.t1 MTR_3g101930 41.880 351 192 6 3 345 108 454 1.38e-84 263
MS.gene007831.t1 MTR_3g102010 40.960 354 195 6 3 346 102 451 6.51e-79 249
MS.gene007831.t1 MTR_3g102020 40.286 350 199 6 3 346 106 451 4.45e-78 246
MS.gene007831.t1 MTR_3g101960 39.710 345 198 6 3 341 105 445 3.72e-76 241
MS.gene007831.t1 MTR_3g101970 39.420 345 193 6 3 345 106 436 1.13e-75 240
MS.gene007831.t1 MTR_3g070170 31.443 388 210 5 2 346 96 470 9.26e-63 207
MS.gene007831.t1 MTR_4g015180 34.729 406 196 10 2 346 90 487 2.08e-62 207
MS.gene007831.t1 MTR_5g081960 32.658 395 209 11 2 342 91 482 4.03e-56 190
MS.gene007831.t1 MTR_7g026770 50.262 191 72 3 54 242 132 301 2.60e-55 183
MS.gene007831.t1 MTR_4g094825 52.980 151 59 2 197 346 252 391 1.91e-47 165
MS.gene007831.t1 MTR_4g094825 52.991 117 52 1 1 114 160 276 3.20e-34 130
MS.gene007831.t1 MTR_3g102030 33.993 303 165 7 3 300 48 320 2.07e-47 163
MS.gene007831.t1 MTR_6g034485 54.762 126 56 1 99 224 1 125 2.47e-47 156
MS.gene007831.t1 MTR_6g045553 30.659 349 202 6 31 342 126 471 4.03e-47 166
MS.gene007831.t1 MTR_6g034495 77.320 97 20 1 2 96 71 167 9.73e-47 156
MS.gene007831.t1 MTR_8g040760 64.407 118 41 1 2 118 95 212 1.65e-43 150
MS.gene007831.t1 MTR_7g026850 68.817 93 29 0 1 93 71 163 4.13e-41 142
MS.gene007831.t1 MTR_8g075610 27.143 350 222 13 2 333 77 411 2.30e-29 117
MS.gene007831.t1 MTR_2g064495 26.571 350 227 11 2 333 86 423 3.38e-29 117
MS.gene007831.t1 MTR_2g105330 26.571 350 227 11 2 333 86 423 6.40e-29 116
MS.gene007831.t1 MTR_7g026830 64.103 78 28 0 1 78 20 97 1.28e-28 107
MS.gene007831.t1 MTR_4g007540 25.284 352 230 12 2 333 86 424 1.90e-28 114
MS.gene007831.t1 MTR_3g098980 29.532 342 214 13 5 333 99 426 1.98e-28 114
MS.gene007831.t1 MTR_3g026950 29.688 320 176 12 50 331 129 437 2.77e-28 114
MS.gene007831.t1 MTR_3g049150 29.245 318 181 10 50 333 130 437 1.70e-26 109
MS.gene007831.t1 MTR_7g026780 48.214 112 33 2 235 346 25 111 1.10e-24 97.1
MS.gene007831.t1 MTR_8g096530 27.907 344 224 11 2 333 89 420 1.64e-24 103
MS.gene007831.t1 MTR_7g084940 29.126 309 188 11 2 295 100 392 2.38e-21 94.7
MS.gene007831.t1 MTR_7g026870 68.519 54 17 0 202 255 98 151 5.46e-21 88.6
MS.gene007831.t1 MTR_4g097090 27.303 304 191 12 50 327 141 440 1.31e-20 92.8
MS.gene007831.t1 MTR_7g027175 26.513 347 225 10 2 333 98 429 3.35e-20 91.7
MS.gene007831.t1 MTR_4g127650 24.501 351 234 12 2 327 96 440 1.50e-19 89.7
MS.gene007831.t1 MTR_1g040195 27.978 361 205 17 2 333 71 405 4.45e-19 88.2
MS.gene007831.t1 MTR_4g013050 24.789 355 215 10 2 337 83 404 5.17e-19 87.8
MS.gene007831.t1 MTR_7g014250 29.021 286 154 12 51 299 140 413 1.66e-18 86.7
MS.gene007831.t1 MTR_3g049140 29.167 240 131 10 116 331 6 230 2.57e-18 83.6
MS.gene007831.t1 MTR_6g015315 26.498 317 191 10 51 336 140 445 2.96e-18 85.9
MS.gene007831.t1 MTR_6g015320 27.742 310 189 11 51 333 143 444 1.27e-17 84.0
MS.gene007831.t1 MTR_1g040175 26.197 355 225 17 2 335 94 432 1.49e-17 84.0
MS.gene007831.t1 MTR_2g015430 27.715 267 175 7 42 298 128 386 5.71e-17 82.0
MS.gene007831.t1 MTR_7g086000 25.824 364 218 14 2 327 92 441 1.28e-16 80.9
MS.gene007831.t1 MTR_2g089755 27.698 278 167 10 50 299 162 433 1.81e-16 80.5
MS.gene007831.t1 MTR_3g087640 28.221 326 195 14 38 333 146 462 2.99e-16 80.1
MS.gene007831.t1 MTR_7g014230 29.102 323 166 16 43 319 134 439 8.19e-16 78.6
MS.gene007831.t1 MTR_6g015850 26.299 308 197 10 51 334 147 448 2.35e-15 77.0
MS.gene007831.t1 MTR_2g089765 25.625 320 188 9 50 330 159 467 1.06e-14 75.5
MS.gene007831.t1 MTR_7g014360 29.104 268 157 11 51 299 90 343 2.39e-14 73.9
MS.gene007831.t1 MTR_1g081660 25.309 324 197 14 2 305 104 402 3.29e-14 73.6
MS.gene007831.t1 MTR_7g015860 25.347 288 164 10 45 296 141 413 3.34e-14 73.6
MS.gene007831.t1 MTR_7g026880 59.259 54 20 1 293 346 2 53 4.07e-14 66.6
MS.gene007831.t1 MTR_1g040215 25.000 320 189 12 2 296 94 387 8.31e-14 72.4
MS.gene007831.t1 MTR_4g055170 28.378 222 142 5 45 255 140 355 1.09e-13 72.0
MS.gene007831.t1 MTR_3g086020 24.857 350 237 10 2 346 87 415 2.07e-13 71.2
MS.gene007831.t1 MTR_3g465980 26.943 193 130 3 45 228 141 331 3.91e-13 70.5
MS.gene007831.t1 MTR_7g085930 26.667 270 173 8 2 249 89 355 1.10e-12 68.9
MS.gene007831.t1 MTR_7g056087 23.457 243 168 6 2 228 90 330 1.73e-12 68.6
MS.gene007831.t1 MTR_3g465990 27.273 198 131 5 41 228 137 331 3.28e-12 67.8
MS.gene007831.t1 MTR_3g112180 25.478 314 192 11 2 294 96 388 4.02e-12 67.4
MS.gene007831.t1 MTR_5g026320 24.865 370 234 14 1 346 104 453 5.82e-12 67.0
MS.gene007831.t1 MTR_2g089670 23.551 276 169 7 50 295 166 429 2.34e-11 65.1
MS.gene007831.t1 MTR_7g084910 27.803 223 144 7 2 212 101 318 2.38e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007831.t1 AT5G67150 40.571 350 196 6 2 342 96 442 7.79e-85 264
MS.gene007831.t1 AT3G50280 38.109 349 207 6 2 343 94 440 1.30e-80 253
MS.gene007831.t1 AT3G50300 40.336 357 196 9 2 345 94 446 3.72e-80 251
MS.gene007831.t1 AT5G67160 40.286 350 197 7 2 346 90 432 8.62e-78 245
MS.gene007831.t1 AT5G07860 40.227 353 191 7 2 345 107 448 2.81e-75 239
MS.gene007831.t1 AT3G50270 37.110 353 213 6 2 346 97 448 5.83e-75 238
MS.gene007831.t1 AT5G01210 36.198 384 202 6 1 346 91 469 4.43e-74 237
MS.gene007831.t1 AT5G42830 39.496 357 198 8 2 346 99 449 2.76e-73 234
MS.gene007831.t1 AT3G50280 38.462 312 184 5 38 343 1 310 6.24e-72 226
MS.gene007831.t1 AT5G07850 40.056 357 194 9 2 346 105 453 3.11e-69 224
MS.gene007831.t1 AT5G07870 37.741 363 200 7 2 346 107 461 6.99e-68 220
MS.gene007831.t1 AT2G39980 34.596 396 201 8 2 346 92 480 1.53e-65 215
MS.gene007831.t1 AT5G38130 37.982 337 190 9 2 327 114 442 7.57e-64 210
MS.gene007831.t1 AT5G23940 35.443 316 189 6 39 342 136 448 9.75e-58 194
MS.gene007831.t1 AT3G50290 41.948 267 146 5 35 293 4 269 2.45e-55 182
MS.gene007831.t1 AT5G48930 26.705 352 225 11 2 333 86 424 4.58e-27 111
MS.gene007831.t1 AT3G48720 25.513 341 238 8 2 334 91 423 1.72e-24 103
MS.gene007831.t1 AT2G19070 27.322 366 222 14 2 334 88 442 6.93e-23 99.4
MS.gene007831.t1 AT2G40230 28.846 312 198 11 2 300 91 391 7.30e-22 96.3
MS.gene007831.t1 AT5G41040 26.496 351 222 12 2 333 99 432 8.65e-22 96.3
MS.gene007831.t1 AT5G41040 26.496 351 222 12 2 333 115 448 1.09e-21 95.9
MS.gene007831.t1 AT1G28680 28.897 263 170 8 45 298 135 389 2.05e-21 95.1
MS.gene007831.t1 AT1G28680 31.937 191 120 5 45 228 135 322 8.96e-21 92.8
MS.gene007831.t1 AT5G63560 24.854 342 223 11 2 328 91 413 1.42e-19 89.7
MS.gene007831.t1 AT3G29590 25.484 310 206 9 48 337 138 442 1.35e-18 87.0
MS.gene007831.t1 AT3G29635 26.710 307 197 12 48 331 142 443 2.75e-17 83.2
MS.gene007831.t1 AT5G61160 25.240 313 194 11 48 333 139 438 8.75e-17 81.6
MS.gene007831.t1 AT1G24420 26.923 312 205 12 2 304 90 387 5.23e-16 79.0
MS.gene007831.t1 AT1G24420 26.923 312 205 12 2 304 90 387 5.23e-16 79.0
MS.gene007831.t1 AT5G39090 27.541 305 177 13 48 325 140 427 6.61e-16 79.0
MS.gene007831.t1 AT5G07080 26.289 194 113 4 52 226 149 331 8.60e-15 75.5
MS.gene007831.t1 AT3G03480 26.727 333 203 14 2 316 103 412 2.08e-14 74.3
MS.gene007831.t1 AT1G03390 26.857 350 215 16 5 328 110 444 2.75e-14 73.9
MS.gene007831.t1 AT5G57840 26.316 361 207 17 2 327 86 422 1.10e-13 72.0
MS.gene007831.t1 AT1G65450 25.625 320 190 13 2 295 103 400 4.67e-13 70.1
MS.gene007831.t1 AT5G39050 25.168 298 179 12 62 325 160 447 4.91e-13 70.1
MS.gene007831.t1 AT3G47170 25.128 195 123 6 52 226 153 344 9.09e-13 69.3
MS.gene007831.t1 AT1G32910 25.767 326 192 13 1 296 94 399 1.97e-12 68.6
MS.gene007831.t1 AT2G25150 24.823 282 176 12 52 312 148 414 8.04e-12 66.6
MS.gene007831.t1 AT1G78990 25.697 323 191 14 1 296 96 396 8.78e-12 66.2
MS.gene007831.t1 AT2G23510 24.138 261 173 8 53 298 150 400 1.27e-11 65.9

Find 71 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTTGGTTTGATGTTTA+TGG 0.170784 8.1:+53687478 MS.gene007831:CDS
TGGAAATGATCCCGAGTTTA+TGG 0.213870 8.1:+53687645 MS.gene007831:CDS
CCGTTGCCTGAGGATTATTT+TGG 0.234642 8.1:+53687250 MS.gene007831:CDS
GCGAAATTCGTGCTGGATAT+TGG 0.263514 8.1:+53687205 MS.gene007831:CDS
GAGAGTATTTCATTTCAAAA+AGG 0.290139 8.1:+53687051 MS.gene007831:CDS
ATGTCTTCCTTGTGAAGTTT+TGG 0.303708 8.1:+53687615 MS.gene007831:CDS
GATGTTTATGGTAATGATTT+TGG 0.307637 8.1:+53687490 MS.gene007831:CDS
ACGATCAAATGTTGGAAGTT+TGG 0.316033 8.1:-53686930 None:intergenic
AAAATTCAAAGCAAACTTAG+AGG 0.330646 8.1:+53687090 MS.gene007831:CDS
TGGGCTTGGTAAGGGCTCTT+TGG 0.337089 8.1:+53687330 MS.gene007831:CDS
TATTGTGAAAGGAAATCTAA+TGG 0.359609 8.1:-53686978 None:intergenic
TTGAAATGAAATACTCTCTC+TGG 0.360829 8.1:-53687046 None:intergenic
GTTAACCACGTGATTGTTGA+TGG 0.384791 8.1:+53686845 MS.gene007831:CDS
CGAATTTCGCTTCTGCTTGT+GGG 0.396357 8.1:-53687192 None:intergenic
GGATTACAACCCACATTAGT+AGG 0.397014 8.1:-53687677 None:intergenic
ACGAATTTCGCTTCTGCTTG+TGG 0.401202 8.1:-53687193 None:intergenic
CATTAAAGCCGGTGACTTGT+TGG 0.413794 8.1:+53687300 MS.gene007831:CDS
TTGTTGATGGTACGTCGTTT+TGG 0.426327 8.1:+53686858 MS.gene007831:CDS
GGAAGACGGTGGGCTTGGTA+AGG 0.427310 8.1:+53687321 MS.gene007831:CDS
CCATCATGTGCAACAACAAA+GGG 0.428645 8.1:+53686636 None:intergenic
ATTGTGAAAGGAAATCTAAT+GGG 0.441170 8.1:-53686977 None:intergenic
TTAGTCGACGGCATCTTCAT+TGG 0.444242 8.1:+53686815 MS.gene007831:CDS
TTTGGCATTTCATCAATTCA+TGG 0.452731 8.1:+53686876 MS.gene007831:CDS
CACAAGGAAGACATACTTCA+AGG 0.464894 8.1:-53687606 None:intergenic
CAACTTCTCATCTGTGTGCA+AGG 0.466084 8.1:-53687371 None:intergenic
AACAGTGATTCATTGGTGAT+TGG 0.474184 8.1:+53687451 MS.gene007831:CDS
AACTTCCAACATTTGATCGT+TGG 0.480962 8.1:+53686933 MS.gene007831:CDS
TGGTGATTGGTGGTTCTCCT+TGG 0.487443 8.1:+53687464 MS.gene007831:CDS
TTGGCATTTCATCAATTCAT+GGG 0.489109 8.1:+53686877 MS.gene007831:CDS
AATGAGGATAATTATGAAGA+AGG 0.489922 8.1:+53687010 MS.gene007831:CDS
TGAATAGGAGGATGATAAGT+GGG 0.498813 8.1:-53686713 None:intergenic
CACAATAGAGTCACGAAATG+AGG 0.502975 8.1:+53686994 MS.gene007831:CDS
GTGAATAGGAGGATGATAAG+TGG 0.505672 8.1:-53686714 None:intergenic
CGTCGACTAACTCTGTTACT+TGG 0.506191 8.1:-53686802 None:intergenic
TTCAAAGCAAACTTAGAGGT+TGG 0.511060 8.1:+53687094 MS.gene007831:CDS
TTGTTGGAAGACGGTGGGCT+TGG 0.520935 8.1:+53687316 MS.gene007831:CDS
AGTGATTCATTGGTGATTGG+TGG 0.529204 8.1:+53687454 MS.gene007831:CDS
TTTCGTGACTCTATTGTGAA+AGG 0.529927 8.1:-53686989 None:intergenic
TATGGCCAACAGTGATTCAT+TGG 0.530783 8.1:+53687444 MS.gene007831:CDS
ATGAGCGAAAATTGCTTGCA+AGG 0.532407 8.1:-53687134 None:intergenic
GAAAACCAACGATCAAATGT+TGG 0.535798 8.1:-53686938 None:intergenic
GAAGACGGTGGGCTTGGTAA+GGG 0.539527 8.1:+53687322 MS.gene007831:CDS
GTGACTTGTTGGAAGACGGT+GGG 0.548009 8.1:+53687311 MS.gene007831:CDS
ACCGTCTTCCAACAAGTCAC+CGG 0.551339 8.1:-53687308 None:intergenic
AGCAGAAGCGAAATTCGTGC+TGG 0.555369 8.1:+53687198 MS.gene007831:CDS
GGAAAGATTTATGTGTATGC+GGG 0.563929 8.1:+53687562 MS.gene007831:CDS
ATACCAGAGGTGACAAAACT+CGG 0.565166 8.1:-53687424 None:intergenic
GCATTACCAAAATAATCCTC+AGG 0.566644 8.1:-53687256 None:intergenic
TGTGTTGTTAGCATTAAAGC+CGG 0.567065 8.1:+53687289 MS.gene007831:CDS
TCCATCATGTGCAACAACAA+AGG 0.573572 8.1:+53686635 None:intergenic
CCAAAATAATCCTCAGGCAA+CGG 0.577247 8.1:-53687250 None:intergenic
GTGTATGCGGGTGTAGAAGA+TGG 0.583389 8.1:+53687574 MS.gene007831:CDS
GGCAACGGAGGAATCAACCT+TGG 0.584288 8.1:-53687235 None:intergenic
ATAAGTGGGTTTAACGATGT+CGG 0.584805 8.1:-53686699 None:intergenic
GCCGGTGACTTGTTGGAAGA+CGG 0.588361 8.1:+53687307 MS.gene007831:CDS
GTTGATTCCTCCGTTGCCTG+AGG 0.590687 8.1:+53687240 MS.gene007831:CDS
GGTGACTTGTTGGAAGACGG+TGG 0.597827 8.1:+53687310 MS.gene007831:CDS
GGACACAACATCCATAAACT+CGG 0.608508 8.1:-53687656 None:intergenic
GTTACTTGGACTGCAAGTAA+CGG 0.617187 8.1:-53686788 None:intergenic
AATCACCAATGAATCACTGT+TGG 0.617756 8.1:-53687449 None:intergenic
TGGAAAGATTTATGTGTATG+CGG 0.617965 8.1:+53687561 MS.gene007831:CDS
TCATGGGCTGAAATCTCGAA+AGG 0.621563 8.1:+53686893 MS.gene007831:CDS
GACACAACATCCATAAACTC+GGG 0.639899 8.1:-53687655 None:intergenic
AAATAATCCTCAGGCAACGG+AGG 0.648191 8.1:-53687247 None:intergenic
ATCACTGTTGGCCATACCAG+AGG 0.652147 8.1:-53687437 None:intergenic
CAAGTAACAGAGTTAGTCGA+CGG 0.663446 8.1:+53686803 MS.gene007831:CDS
ATTGCCTCCAAAACTTCACA+AGG 0.673346 8.1:-53687622 None:intergenic
TTACCATAAACATCAAACCA+AGG 0.678732 8.1:-53687481 None:intergenic
TGGATATTGGAATTAGACCA+AGG 0.680206 8.1:+53687218 MS.gene007831:CDS
CATCATGTGCAACAACAAAG+GGG 0.717111 8.1:+53686637 None:intergenic
ACGTACCATCAACAATCACG+TGG 0.741961 8.1:-53686850 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAATCAATATGAAAAT+TGG + chr8.1:53687392-53687411 MS.gene007831:CDS 15.0%
! AAAATTCAAAGCAAACTTAG+AGG + chr8.1:53687090-53687109 MS.gene007831:CDS 25.0%
! AATGAGGATAATTATGAAGA+AGG + chr8.1:53687010-53687029 MS.gene007831:CDS 25.0%
! AATGGAGTTAAAAACTATGA+AGG + chr8.1:53686755-53686774 MS.gene007831:CDS 25.0%
! ATTGTGAAAGGAAATCTAAT+GGG - chr8.1:53686980-53686999 None:intergenic 25.0%
! TATTGTGAAAGGAAATCTAA+TGG - chr8.1:53686981-53687000 None:intergenic 25.0%
!!! AACACTAATGTTTTTTGCTA+CGG - chr8.1:53686678-53686697 None:intergenic 25.0%
!!! GAGAGTATTTCATTTCAAAA+AGG + chr8.1:53687051-53687070 MS.gene007831:CDS 25.0%
!!! GATGTTTATGGTAATGATTT+TGG + chr8.1:53687490-53687509 MS.gene007831:CDS 25.0%
!!! TTATGGTAATGATTTTGGTT+GGG + chr8.1:53687495-53687514 MS.gene007831:CDS 25.0%
!!! TTTATGGTAATGATTTTGGT+TGG + chr8.1:53687494-53687513 MS.gene007831:CDS 25.0%
TGGAAAGATTTATGTGTATG+CGG + chr8.1:53687561-53687580 MS.gene007831:CDS 30.0%
TTACCATAAACATCAAACCA+AGG - chr8.1:53687484-53687503 None:intergenic 30.0%
TTGAAATGAAATACTCTCTC+TGG - chr8.1:53687049-53687068 None:intergenic 30.0%
TTGGCATTTCATCAATTCAT+GGG + chr8.1:53686877-53686896 MS.gene007831:CDS 30.0%
TTTGGCATTTCATCAATTCA+TGG + chr8.1:53686876-53686895 MS.gene007831:CDS 30.0%
! AAGCAATTTTCGCTCATATT+TGG + chr8.1:53687140-53687159 MS.gene007831:CDS 30.0%
! CATTTAGAGCAAAAAATGAG+TGG - chr8.1:53686739-53686758 None:intergenic 30.0%
!!! CACTCATTTTTTGCTCTAAA+TGG + chr8.1:53686737-53686756 MS.gene007831:CDS 30.0%
!!! TATGGTAATGATTTTGGTTG+GGG + chr8.1:53687496-53687515 MS.gene007831:CDS 30.0%
!!! TTTGATCGTTGGTTTTCAAA+AGG + chr8.1:53686944-53686963 MS.gene007831:CDS 30.0%
AAAAATGAGTGGTGAATAGG+AGG - chr8.1:53686728-53686747 None:intergenic 35.0%
AACTTCCAACATTTGATCGT+TGG + chr8.1:53686933-53686952 MS.gene007831:CDS 35.0%
AATCACCAATGAATCACTGT+TGG - chr8.1:53687452-53687471 None:intergenic 35.0%
ACGATCAAATGTTGGAAGTT+TGG - chr8.1:53686933-53686952 None:intergenic 35.0%
GAAAACCAACGATCAAATGT+TGG - chr8.1:53686941-53686960 None:intergenic 35.0%
GCAAAAAATGAGTGGTGAAT+AGG - chr8.1:53686731-53686750 None:intergenic 35.0%
GCATTACCAAAATAATCCTC+AGG - chr8.1:53687259-53687278 None:intergenic 35.0%
GGAAAGATTTATGTGTATGC+GGG + chr8.1:53687562-53687581 MS.gene007831:CDS 35.0%
TGAATAGGAGGATGATAAGT+GGG - chr8.1:53686716-53686735 None:intergenic 35.0%
TGGATATTGGAATTAGACCA+AGG + chr8.1:53687218-53687237 MS.gene007831:CDS 35.0%
TTCAAAGCAAACTTAGAGGT+TGG + chr8.1:53687094-53687113 MS.gene007831:CDS 35.0%
TTTCGTGACTCTATTGTGAA+AGG - chr8.1:53686992-53687011 None:intergenic 35.0%
! AACAGTGATTCATTGGTGAT+TGG + chr8.1:53687451-53687470 MS.gene007831:CDS 35.0%
! ATAAGTGGGTTTAACGATGT+CGG - chr8.1:53686702-53686721 None:intergenic 35.0%
! ATGTCTTCCTTGTGAAGTTT+TGG + chr8.1:53687615-53687634 MS.gene007831:CDS 35.0%
! TCTCCTTGGTTTGATGTTTA+TGG + chr8.1:53687478-53687497 MS.gene007831:CDS 35.0%
! TGTGTTGTTAGCATTAAAGC+CGG + chr8.1:53687289-53687308 MS.gene007831:CDS 35.0%
!!! ATGGTAATGATTTTGGTTGG+GGG + chr8.1:53687497-53687516 MS.gene007831:CDS 35.0%
ATACCAGAGGTGACAAAACT+CGG - chr8.1:53687427-53687446 None:intergenic 40.0%
ATGAGCGAAAATTGCTTGCA+AGG - chr8.1:53687137-53687156 None:intergenic 40.0%
ATTGCCTCCAAAACTTCACA+AGG - chr8.1:53687625-53687644 None:intergenic 40.0%
CAAGTAACAGAGTTAGTCGA+CGG + chr8.1:53686803-53686822 MS.gene007831:CDS 40.0%
CACAAGGAAGACATACTTCA+AGG - chr8.1:53687609-53687628 None:intergenic 40.0%
CACAATAGAGTCACGAAATG+AGG + chr8.1:53686994-53687013 MS.gene007831:CDS 40.0%
CCAAAATAATCCTCAGGCAA+CGG - chr8.1:53687253-53687272 None:intergenic 40.0%
GACACAACATCCATAAACTC+GGG - chr8.1:53687658-53687677 None:intergenic 40.0%
GGACACAACATCCATAAACT+CGG - chr8.1:53687659-53687678 None:intergenic 40.0%
GTGAATAGGAGGATGATAAG+TGG - chr8.1:53686717-53686736 None:intergenic 40.0%
GTTAACCACGTGATTGTTGA+TGG + chr8.1:53686845-53686864 MS.gene007831:CDS 40.0%
GTTACTTGGACTGCAAGTAA+CGG - chr8.1:53686791-53686810 None:intergenic 40.0%
TATGGCCAACAGTGATTCAT+TGG + chr8.1:53687444-53687463 MS.gene007831:CDS 40.0%
TGGAAATGATCCCGAGTTTA+TGG + chr8.1:53687645-53687664 MS.gene007831:CDS 40.0%
! AGTGATTCATTGGTGATTGG+TGG + chr8.1:53687454-53687473 MS.gene007831:CDS 40.0%
!! TCTTCCTTGTGAAGTTTTGG+AGG + chr8.1:53687618-53687637 MS.gene007831:CDS 40.0%
!!! TGTGAAGTTTTGGAGGCAAT+TGG + chr8.1:53687625-53687644 MS.gene007831:CDS 40.0%
!!! TTGTTGATGGTACGTCGTTT+TGG + chr8.1:53686858-53686877 MS.gene007831:CDS 40.0%
AAATAATCCTCAGGCAACGG+AGG - chr8.1:53687250-53687269 None:intergenic 45.0%
ACGAATTTCGCTTCTGCTTG+TGG - chr8.1:53687196-53687215 None:intergenic 45.0%
ACGTACCATCAACAATCACG+TGG - chr8.1:53686853-53686872 None:intergenic 45.0%
CAACTTCTCATCTGTGTGCA+AGG - chr8.1:53687374-53687393 None:intergenic 45.0%
CGAATTTCGCTTCTGCTTGT+GGG - chr8.1:53687195-53687214 None:intergenic 45.0%
GCGAAATTCGTGCTGGATAT+TGG + chr8.1:53687205-53687224 MS.gene007831:CDS 45.0%
TTAGTCGACGGCATCTTCAT+TGG + chr8.1:53686815-53686834 MS.gene007831:CDS 45.0%
! CATTAAAGCCGGTGACTTGT+TGG + chr8.1:53687300-53687319 MS.gene007831:CDS 45.0%
! CCGTTGCCTGAGGATTATTT+TGG + chr8.1:53687250-53687269 MS.gene007831:CDS 45.0%
! CGTCGACTAACTCTGTTACT+TGG - chr8.1:53686805-53686824 None:intergenic 45.0%
! TCATGGGCTGAAATCTCGAA+AGG + chr8.1:53686893-53686912 MS.gene007831:CDS 45.0%
!! GAGTTTTGTCACCTCTGGTA+TGG + chr8.1:53687426-53687445 MS.gene007831:CDS 45.0%
ACCGTCTTCCAACAAGTCAC+CGG - chr8.1:53687311-53687330 None:intergenic 50.0%
AGCAGAAGCGAAATTCGTGC+TGG + chr8.1:53687198-53687217 MS.gene007831:CDS 50.0%
ATCACTGTTGGCCATACCAG+AGG - chr8.1:53687440-53687459 None:intergenic 50.0%
GTGTATGCGGGTGTAGAAGA+TGG + chr8.1:53687574-53687593 MS.gene007831:CDS 50.0%
TTTGGTTGGGGGAAACCTGT+GGG + chr8.1:53687508-53687527 MS.gene007831:CDS 50.0%
! GGGGGTGCGAGTAAAAGAAA+TGG + chr8.1:53687541-53687560 MS.gene007831:CDS 50.0%
! TGGTGATTGGTGGTTCTCCT+TGG + chr8.1:53687464-53687483 MS.gene007831:CDS 50.0%
!! ACACCGAGTTTTGTCACCTC+TGG + chr8.1:53687421-53687440 MS.gene007831:CDS 50.0%
!! GTGACTTGTTGGAAGACGGT+GGG + chr8.1:53687311-53687330 MS.gene007831:CDS 50.0%
!! TTTTGGTTGGGGGAAACCTG+TGG + chr8.1:53687507-53687526 MS.gene007831:CDS 50.0%
AAACCTGTGGGGGTTCGAAG+TGG + chr8.1:53687520-53687539 MS.gene007831:CDS 55.0%
AACCTGTGGGGGTTCGAAGT+GGG + chr8.1:53687521-53687540 MS.gene007831:CDS 55.0%
GGCAACGGAGGAATCAACCT+TGG - chr8.1:53687238-53687257 None:intergenic 55.0%
TTGGTTGGGGGAAACCTGTG+GGG + chr8.1:53687509-53687528 MS.gene007831:CDS 55.0%
! GAAGACGGTGGGCTTGGTAA+GGG + chr8.1:53687322-53687341 MS.gene007831:CDS 55.0%
! GTTGATTCCTCCGTTGCCTG+AGG + chr8.1:53687240-53687259 MS.gene007831:CDS 55.0%
! TGGGCTTGGTAAGGGCTCTT+TGG + chr8.1:53687330-53687349 MS.gene007831:CDS 55.0%
! TTGTTGGAAGACGGTGGGCT+TGG + chr8.1:53687316-53687335 MS.gene007831:CDS 55.0%
!! GCCGGTGACTTGTTGGAAGA+CGG + chr8.1:53687307-53687326 MS.gene007831:CDS 55.0%
!! GGTGACTTGTTGGAAGACGG+TGG + chr8.1:53687310-53687329 MS.gene007831:CDS 55.0%
ACCTGTGGGGGTTCGAAGTG+GGG + chr8.1:53687522-53687541 MS.gene007831:CDS 60.0%
TGGTTGGGGGAAACCTGTGG+GGG + chr8.1:53687510-53687529 MS.gene007831:CDS 60.0%
! GGAAGACGGTGGGCTTGGTA+AGG + chr8.1:53687321-53687340 MS.gene007831:CDS 60.0%
CCTGTGGGGGTTCGAAGTGG+GGG + chr8.1:53687523-53687542 MS.gene007831:CDS 65.0%
CCCCCACTTCGAACCCCCAC+AGG - chr8.1:53687526-53687545 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 53686641 53687684 53686641 ID=MS.gene007831
chr8.1 mRNA 53686641 53687684 53686641 ID=MS.gene007831.t1;Parent=MS.gene007831
chr8.1 exon 53686641 53687684 53686641 ID=MS.gene007831.t1.exon1;Parent=MS.gene007831.t1
chr8.1 CDS 53686641 53687684 53686641 ID=cds.MS.gene007831.t1;Parent=MS.gene007831.t1
Gene Sequence

>MS.gene007831

ATGTGCAACAACAAAGGGGCACTCTTTGTTCATGCCGTAGCAAAAAACATTAGTGTTGCCGACATCGTTAAACCCACTTATCATCCTCCTATTCACCACTCATTTTTTGCTCTAAATGGAGTTAAAAACTATGAAGGAACATCACAACCGTTACTTGCAGTCCAAGTAACAGAGTTAGTCGACGGCATCTTCATTGGCTTCACAGTTAACCACGTGATTGTTGATGGTACGTCGTTTTGGCATTTCATCAATTCATGGGCTGAAATCTCGAAAGGTTGTCTTAAAATATCCAAACTTCCAACATTTGATCGTTGGTTTTCAAAAGGTATTGAATGTCCCATTAGATTTCCTTTCACAATAGAGTCACGAAATGAGGATAATTATGAAGAAGGAAAAATCAACTTTCCAGAGAGAGTATTTCATTTCAAAAAGGAGAGTATCGCAAAACTAAAATTCAAAGCAAACTTAGAGGTTGGTACAAAAAATATATCTTCCTTGCAAGCAATTTTCGCTCATATTTGGCGATCTATTATACGTTGCAAAAAACTTGACCCACAAGCAGAAGCGAAATTCGTGCTGGATATTGGAATTAGACCAAGGTTGATTCCTCCGTTGCCTGAGGATTATTTTGGTAATGCTGTGATAGATTGTGTTGTTAGCATTAAAGCCGGTGACTTGTTGGAAGACGGTGGGCTTGGTAAGGGCTCTTTGGAGATGAACAAGATGATTGCCTTGCACACAGATGAGAAGTTGAAAAATCAATATGAAAATTGGTTAATAACACCGAGTTTTGTCACCTCTGGTATGGCCAACAGTGATTCATTGGTGATTGGTGGTTCTCCTTGGTTTGATGTTTATGGTAATGATTTTGGTTGGGGGAAACCTGTGGGGGTTCGAAGTGGGGGTGCGAGTAAAAGAAATGGAAAGATTTATGTGTATGCGGGTGTAGAAGATGGTAGTATGAACCTTGAAGTATGTCTTCCTTGTGAAGTTTTGGAGGCAATTGGAAATGATCCCGAGTTTATGGATGTTGTGTCCTACTAA
Protein sequence

>MS.gene007831.t1

MCNNKGALFVHAVAKNISVADIVKPTYHPPIHHSFFALNGVKNYEGTSQPLLAVQVTELVDGIFIGFTVNHVIVDGTSFWHFINSWAEISKGCLKISKLPTFDRWFSKGIECPIRFPFTIESRNEDNYEEGKINFPERVFHFKKESIAKLKFKANLEVGTKNISSLQAIFAHIWRSIIRCKKLDPQAEAKFVLDIGIRPRLIPPLPEDYFGNAVIDCVVSIKAGDLLEDGGLGKGSLEMNKMIALHTDEKLKNQYENWLITPSFVTSGMANSDSLVIGGSPWFDVYGNDFGWGKPVGVRSGGASKRNGKIYVYAGVEDGSMNLEVCLPCEVLEAIGNDPEFMDVVSY