AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90491


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90491.t1 MTR_4g094842 91.727 411 31 2 1 410 39 447 0.0 770
MS.gene90491.t1 MTR_4g094835 61.951 410 138 8 3 407 46 442 3.14e-178 504
MS.gene90491.t1 MTR_8g041770 58.293 410 158 5 1 409 42 439 1.80e-165 472
MS.gene90491.t1 MTR_4g022825 58.111 413 153 7 2 407 37 436 4.99e-165 471
MS.gene90491.t1 MTR_4g094838 59.367 411 137 7 3 407 42 428 6.62e-165 470
MS.gene90491.t1 MTR_4g094832 63.944 355 116 5 58 407 79 426 4.82e-162 462
MS.gene90491.t1 MTR_0190s0020 55.257 409 174 4 1 409 41 440 2.91e-161 461
MS.gene90491.t1 MTR_3g088420 57.561 410 155 8 3 409 38 431 1.44e-159 456
MS.gene90491.t1 MTR_4g022720 58.252 412 153 8 2 409 37 433 1.40e-158 454
MS.gene90491.t1 MTR_8g079710 57.421 411 147 9 3 402 43 436 5.23e-158 453
MS.gene90491.t1 MTR_4g022800 56.938 418 156 8 2 409 37 440 6.09e-158 452
MS.gene90491.t1 MTR_4g022670 56.355 417 159 8 2 409 37 439 8.52e-157 449
MS.gene90491.t1 MTR_7g026860 56.731 416 156 8 2 409 37 436 3.28e-156 448
MS.gene90491.t1 MTR_3g026310 55.107 421 161 8 3 408 38 445 2.44e-154 444
MS.gene90491.t1 MTR_4g094828 54.126 412 166 8 3 403 43 442 6.05e-154 442
MS.gene90491.t1 MTR_4g022290 53.865 414 160 9 3 404 44 438 6.98e-149 429
MS.gene90491.t1 MTR_4g022760 51.442 416 137 7 2 409 37 395 2.70e-133 388
MS.gene90491.t1 MTR_3g101900 42.446 417 212 13 3 407 44 444 1.67e-97 298
MS.gene90491.t1 MTR_3g101930 42.619 420 218 11 3 409 44 453 5.38e-97 297
MS.gene90491.t1 MTR_6g016815 44.103 390 141 8 19 407 64 377 3.88e-96 293
MS.gene90491.t1 MTR_3g101960 41.063 414 223 9 3 406 43 445 1.30e-88 276
MS.gene90491.t1 MTR_3g101970 39.808 417 215 10 2 407 42 433 2.62e-87 272
MS.gene90491.t1 MTR_3g102020 39.857 419 224 10 3 407 43 447 4.07e-86 270
MS.gene90491.t1 MTR_3g070170 35.892 443 223 9 3 407 47 466 1.63e-82 261
MS.gene90491.t1 MTR_3g102010 38.995 418 228 10 3 407 44 447 1.24e-81 258
MS.gene90491.t1 MTR_8g040780 54.419 215 95 2 195 406 13 227 1.07e-78 243
MS.gene90491.t1 MTR_5g081960 33.405 464 228 11 3 407 41 482 7.07e-73 236
MS.gene90491.t1 MTR_4g015180 33.191 467 228 10 3 408 41 484 4.59e-70 229
MS.gene90491.t1 MTR_7g026850 61.688 154 47 3 2 154 20 162 4.50e-59 191
MS.gene90491.t1 MTR_6g045553 32.579 442 244 12 2 407 48 471 1.03e-58 199
MS.gene90491.t1 MTR_8g040760 57.377 183 69 5 2 183 40 214 2.04e-57 187
MS.gene90491.t1 MTR_4g094825 56.069 173 69 4 3 175 106 271 7.88e-56 189
MS.gene90491.t1 MTR_4g094825 58.278 151 51 2 258 407 248 387 1.01e-51 178
MS.gene90491.t1 MTR_7g026770 50.515 194 70 3 116 307 132 301 5.46e-50 171
MS.gene90491.t1 MTR_3g102030 35.294 306 160 8 65 365 48 320 1.35e-47 165
MS.gene90491.t1 MTR_6g034495 56.429 140 53 2 14 153 29 160 4.29e-46 156
MS.gene90491.t1 MTR_6g034485 55.469 128 53 2 161 288 1 124 2.89e-43 147
MS.gene90491.t1 MTR_4g007540 28.537 417 246 17 8 398 34 424 3.78e-39 145
MS.gene90491.t1 MTR_2g105330 28.571 413 250 17 8 398 34 423 3.23e-37 140
MS.gene90491.t1 MTR_2g064495 28.329 413 251 17 8 398 34 423 3.80e-37 140
MS.gene90491.t1 MTR_7g026830 62.222 90 34 0 51 140 8 97 3.16e-33 120
MS.gene90491.t1 MTR_8g096530 30.484 351 207 12 22 360 57 382 3.48e-33 129
MS.gene90491.t1 MTR_8g075610 26.718 393 246 15 24 400 47 413 2.18e-32 127
MS.gene90491.t1 MTR_3g098980 27.926 376 241 11 24 392 66 418 3.12e-30 121
MS.gene90491.t1 MTR_3g026950 27.529 425 239 15 12 396 42 437 2.40e-29 119
MS.gene90491.t1 MTR_4g127650 25.412 425 246 16 7 392 48 440 8.26e-25 106
MS.gene90491.t1 MTR_4g097090 25.714 420 252 14 7 392 47 440 7.11e-24 103
MS.gene90491.t1 MTR_4g013050 27.407 405 219 13 22 402 51 404 2.06e-23 101
MS.gene90491.t1 MTR_3g049150 27.184 412 234 17 21 396 52 433 3.10e-23 101
MS.gene90491.t1 MTR_1g081660 24.595 370 235 13 19 374 68 407 5.12e-23 100
MS.gene90491.t1 MTR_7g027175 25.686 401 263 13 8 398 54 429 1.30e-22 99.8
MS.gene90491.t1 MTR_1g040195 27.273 352 222 14 64 398 71 405 1.40e-22 99.4
MS.gene90491.t1 MTR_7g014330 28.608 388 216 17 24 372 62 427 2.16e-22 99.0
MS.gene90491.t1 MTR_1g040215 25.341 367 228 15 24 375 64 399 1.05e-20 94.0
MS.gene90491.t1 MTR_7g026780 44.037 109 36 3 301 409 26 109 1.85e-20 86.7
MS.gene90491.t1 MTR_7g014230 28.238 386 220 16 24 372 64 429 2.17e-20 93.2
MS.gene90491.t1 MTR_7g084940 26.989 352 218 13 22 360 67 392 2.39e-20 92.8
MS.gene90491.t1 MTR_1g040175 25.000 380 251 15 5 375 45 399 2.70e-20 92.8
MS.gene90491.t1 MTR_7g014250 27.764 407 225 18 7 374 53 429 3.34e-20 92.8
MS.gene90491.t1 MTR_2g089765 27.187 320 186 13 112 395 159 467 4.63e-20 92.4
MS.gene90491.t1 MTR_3g071320 26.710 307 190 11 6 295 42 330 4.89e-20 92.0
MS.gene90491.t1 MTR_6g015815 24.691 405 261 13 21 400 67 452 5.76e-20 92.0
MS.gene90491.t1 MTR_7g085930 24.027 437 262 13 6 398 41 451 7.52e-20 91.7
MS.gene90491.t1 MTR_6g015850 25.733 307 203 7 113 399 147 448 1.31e-19 90.9
MS.gene90491.t1 MTR_6g015315 27.331 311 199 11 113 401 140 445 1.95e-19 90.5
MS.gene90491.t1 MTR_4g055170 28.013 307 187 10 14 308 59 343 4.45e-19 89.4
MS.gene90491.t1 MTR_6g015320 25.407 307 203 9 113 398 143 444 5.45e-19 89.0
MS.gene90491.t1 MTR_7g015860 25.057 439 258 16 9 403 51 462 5.81e-19 89.0
MS.gene90491.t1 MTR_6g015830 23.775 408 261 11 21 400 67 452 6.67e-19 88.6
MS.gene90491.t1 MTR_3g086020 23.940 401 244 14 6 392 43 396 7.27e-19 88.2
MS.gene90491.t1 MTR_3g028210 23.821 403 266 13 17 392 60 448 1.24e-18 87.8
MS.gene90491.t1 MTR_5g076700 22.871 411 277 16 2 392 36 426 2.82e-18 87.0
MS.gene90491.t1 MTR_3g465980 26.263 297 203 10 1 291 43 329 1.54e-17 84.7
MS.gene90491.t1 MTR_7g086000 26.914 405 253 17 24 400 60 449 1.61e-17 84.7
MS.gene90491.t1 MTR_7g026800 37.143 140 58 2 189 327 27 137 2.10e-17 80.5
MS.gene90491.t1 MTR_7g114550 23.846 390 259 16 2 374 36 404 2.72e-17 84.0
MS.gene90491.t1 MTR_5g090830 26.330 376 210 14 24 361 66 412 3.71e-17 83.6
MS.gene90491.t1 MTR_7g085990 24.654 434 267 16 6 400 37 449 4.97e-17 83.2
MS.gene90491.t1 MTR_5g090810 25.532 376 213 14 24 361 66 412 5.34e-17 83.2
MS.gene90491.t1 MTR_8g079980 23.020 404 232 14 6 377 41 397 5.94e-17 82.8
MS.gene90491.t1 MTR_7g114470 24.471 425 254 20 2 392 37 428 8.01e-17 82.4
MS.gene90491.t1 MTR_7g114520 23.822 382 258 14 19 386 61 423 8.85e-17 82.4
MS.gene90491.t1 MTR_3g049140 26.957 230 133 7 185 396 18 230 9.60e-17 79.7
MS.gene90491.t1 MTR_8g079970 22.727 396 244 14 6 377 41 398 1.08e-16 82.0
MS.gene90491.t1 MTR_8g012750 25.668 374 228 12 24 360 62 422 1.12e-16 82.0
MS.gene90491.t1 MTR_7g014160 27.494 411 232 19 24 392 69 455 1.85e-16 81.3
MS.gene90491.t1 MTR_5g084850 23.907 389 241 16 6 377 41 391 2.60e-16 80.9
MS.gene90491.t1 MTR_7g013850 22.145 429 264 13 19 398 63 470 2.70e-16 80.9
MS.gene90491.t1 MTR_3g087640 26.150 413 250 16 24 398 67 462 3.29e-16 80.5
MS.gene90491.t1 MTR_6g053810 25.177 282 193 8 18 292 65 335 3.73e-16 80.5
MS.gene90491.t1 MTR_7g114560 24.041 391 257 17 2 374 36 404 3.86e-16 80.5
MS.gene90491.t1 MTR_7g014360 27.737 274 154 11 113 363 90 342 3.90e-16 80.1
MS.gene90491.t1 MTR_5g026320 23.131 428 267 14 6 406 56 448 7.60e-16 79.3
MS.gene90491.t1 MTR_5g084870 21.628 393 246 13 6 377 41 392 1.22e-15 79.0
MS.gene90491.t1 MTR_3g450710 24.339 378 225 15 19 361 60 411 1.46e-15 78.6
MS.gene90491.t1 MTR_3g465990 25.685 292 199 10 7 291 49 329 3.71e-15 77.4
MS.gene90491.t1 MTR_8g079950 23.500 400 250 14 6 384 41 405 1.13e-14 75.9
MS.gene90491.t1 MTR_2g089670 26.757 370 216 16 24 360 82 429 1.64e-14 75.5
MS.gene90491.t1 MTR_7g056087 22.837 416 270 15 7 398 41 429 3.39e-14 74.3
MS.gene90491.t1 MTR_7g084910 25.191 393 227 16 22 393 68 414 4.56e-14 73.9
MS.gene90491.t1 MTR_5g090880 23.907 389 238 15 8 361 49 414 6.87e-14 73.6
MS.gene90491.t1 MTR_3g465930 24.911 281 191 6 19 291 64 332 1.43e-13 72.4
MS.gene90491.t1 MTR_1g040315 25.468 267 173 10 19 279 59 305 2.98e-13 71.2
MS.gene90491.t1 MTR_7g014200 22.803 421 254 19 21 398 66 458 2.06e-12 68.9
MS.gene90491.t1 MTR_7g014620 24.155 414 230 13 24 398 54 422 2.48e-12 68.6
MS.gene90491.t1 MTR_7g026880 51.923 52 23 1 358 409 2 51 3.15e-12 61.6
MS.gene90491.t1 MTR_2g015430 23.529 272 195 7 104 369 128 392 4.82e-12 67.8
MS.gene90491.t1 MTR_2g007880 24.205 409 251 16 24 408 74 447 1.19e-11 66.6
MS.gene90491.t1 MTR_7g026870 53.704 54 25 0 267 320 98 151 1.81e-11 62.4
MS.gene90491.t1 MTR_3g465910 25.623 281 187 9 19 291 63 329 2.11e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90491.t1 AT5G67150 43.237 414 212 13 3 407 43 442 1.68e-102 311
MS.gene90491.t1 AT3G50300 41.542 402 213 10 3 396 41 428 3.04e-91 283
MS.gene90491.t1 AT3G50280 38.835 412 232 8 3 407 41 439 1.15e-90 281
MS.gene90491.t1 AT3G50270 39.563 412 232 10 3 407 43 444 2.60e-90 280
MS.gene90491.t1 AT5G67160 39.853 409 217 11 3 406 43 427 6.45e-86 268
MS.gene90491.t1 AT5G38130 40.100 399 213 11 3 392 61 442 1.90e-85 268
MS.gene90491.t1 AT5G07850 38.756 418 234 9 3 409 45 451 1.13e-82 261
MS.gene90491.t1 AT5G42830 38.129 417 235 10 3 409 44 447 1.27e-82 260
MS.gene90491.t1 AT5G07860 37.681 414 240 7 3 409 45 447 2.07e-81 257
MS.gene90491.t1 AT5G01210 35.811 444 229 7 3 408 41 466 9.97e-80 254
MS.gene90491.t1 AT2G39980 34.286 455 230 8 3 408 43 477 2.05e-79 253
MS.gene90491.t1 AT5G07870 37.182 433 228 11 3 409 45 459 1.50e-78 250
MS.gene90491.t1 AT3G50280 38.339 313 184 4 100 407 1 309 8.63e-69 220
MS.gene90491.t1 AT5G23940 32.783 424 254 10 2 407 38 448 1.30e-66 220
MS.gene90491.t1 AT3G50290 42.963 270 142 7 97 358 4 269 8.12e-59 193
MS.gene90491.t1 AT5G48930 28.607 402 253 14 8 392 34 418 1.04e-37 142
MS.gene90491.t1 AT3G48720 26.110 383 256 9 24 399 61 423 5.92e-28 114
MS.gene90491.t1 AT2G19070 25.653 421 270 13 6 400 40 443 5.30e-27 112
MS.gene90491.t1 AT5G41040 27.273 407 247 16 21 409 82 457 2.21e-26 110
MS.gene90491.t1 AT5G41040 27.273 407 247 16 21 409 66 441 2.46e-26 110
MS.gene90491.t1 AT5G57840 27.187 423 243 17 1 392 34 422 3.49e-24 104
MS.gene90491.t1 AT3G29590 25.000 400 249 15 30 402 67 442 1.40e-23 102
MS.gene90491.t1 AT5G63560 25.189 397 258 11 7 392 44 412 2.26e-23 101
MS.gene90491.t1 AT1G03940 25.408 429 256 16 6 395 46 449 3.52e-23 101
MS.gene90491.t1 AT5G17540 27.110 391 239 17 2 372 35 399 6.28e-23 100
MS.gene90491.t1 AT3G03480 27.114 402 235 17 2 380 45 411 1.36e-22 99.8
MS.gene90491.t1 AT2G40230 26.286 350 235 9 23 365 58 391 1.49e-22 99.4
MS.gene90491.t1 AT3G29635 25.570 395 251 14 21 392 64 438 1.67e-22 99.4
MS.gene90491.t1 AT5G61160 25.949 316 191 12 110 398 139 438 2.97e-20 92.8
MS.gene90491.t1 AT5G07080 27.063 303 186 12 4 291 49 331 1.40e-19 90.9
MS.gene90491.t1 AT1G24430 24.872 390 245 16 6 384 45 397 1.45e-19 90.5
MS.gene90491.t1 AT1G65450 26.688 311 201 13 64 360 103 400 1.45e-18 87.8
MS.gene90491.t1 AT1G24420 24.935 385 246 16 34 408 75 426 2.21e-18 87.0
MS.gene90491.t1 AT1G24420 24.935 385 246 16 34 408 75 426 2.21e-18 87.0
MS.gene90491.t1 AT3G47170 27.402 281 177 10 28 291 74 344 2.32e-18 87.0
MS.gene90491.t1 AT3G29670 22.137 393 257 12 24 392 66 433 3.17e-18 86.7
MS.gene90491.t1 AT5G39050 24.252 301 187 11 124 393 160 450 3.75e-18 86.7
MS.gene90491.t1 AT5G16410 25.654 382 235 11 24 384 91 444 9.60e-18 85.5
MS.gene90491.t1 AT3G30280 23.913 414 233 16 5 384 43 408 3.00e-17 83.6
MS.gene90491.t1 AT5G23970 26.173 405 227 19 15 392 43 402 5.52e-17 82.8
MS.gene90491.t1 AT5G39080 24.205 409 248 15 21 392 62 445 8.34e-17 82.4
MS.gene90491.t1 AT1G03390 24.661 369 244 15 7 361 59 407 4.97e-16 80.1
MS.gene90491.t1 AT3G26040 24.286 420 267 14 6 408 41 426 6.61e-16 79.7
MS.gene90491.t1 AT4G15390 22.430 428 270 15 5 407 45 435 1.28e-15 79.0
MS.gene90491.t1 AT4G15390 22.430 428 270 15 5 407 45 435 1.28e-15 79.0
MS.gene90491.t1 AT1G32910 25.401 374 228 16 12 361 53 399 1.69e-15 78.6
MS.gene90491.t1 AT3G29680 24.809 262 160 9 124 361 152 400 2.67e-15 77.8
MS.gene90491.t1 AT2G25150 23.836 365 248 12 13 364 56 403 7.52e-15 76.6
MS.gene90491.t1 AT1G28680 25.501 349 224 15 27 363 65 389 2.40e-14 75.1
MS.gene90491.t1 AT1G65450 26.939 245 159 9 127 360 1 236 1.23e-13 71.2
MS.gene90491.t1 AT1G28680 26.316 304 193 13 27 320 65 347 2.35e-13 71.6
MS.gene90491.t1 AT5G47980 24.876 402 245 18 6 384 41 408 3.40e-13 71.2
MS.gene90491.t1 AT2G23510 23.155 393 259 16 4 378 48 415 1.35e-12 69.7

Find 73 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCAAGGTTTGATGTTTA+TGG 0.150931 8.3:+23594033 MS.gene90491:CDS
TTGAGGTGTCATTTGGGTTT+TGG 0.217160 8.3:-23593033 None:intergenic
TTGTCTTTCTTATGATATTT+TGG 0.223517 8.3:+23594170 MS.gene90491:CDS
GATGTTTATGGTAATGATTT+TGG 0.307637 8.3:+23594045 MS.gene90491:CDS
TTACTTCGGAAATGCCTTGC+AGG 0.351265 8.3:+23593819 MS.gene90491:CDS
ATTTGGTTTGAGGTGTCATT+TGG 0.356105 8.3:-23593040 None:intergenic
CAAGTTACTGAGCTTGTTGA+TGG 0.358436 8.3:+23593349 MS.gene90491:CDS
TTGTCGATGGTAAGTCGTTT+TGG 0.363142 8.3:+23593404 MS.gene90491:CDS
TTACTTGCTGAAGGAGCGTT+TGG 0.366525 8.3:+23593871 MS.gene90491:CDS
ACAATGGAAGGAACATAGTT+TGG 0.370467 8.3:-23593259 None:intergenic
CAATACATGATTTCTTCTTC+CGG 0.374442 8.3:-23593748 None:intergenic
TTTGGTTTGAGGTGTCATTT+GGG 0.388335 8.3:-23593039 None:intergenic
GCTTAGTAGTGTTAAGGCTT+TGG 0.398296 8.3:+23593999 MS.gene90491:CDS
TGTTTAGTCATTGATGTTAG+AGG 0.399942 8.3:+23593769 MS.gene90491:CDS
CAAGTTGAAATGAACCAAAA+AGG 0.407254 8.3:+23592992 None:intergenic
TGCATCCTTTGTAACAATCT+AGG 0.410406 8.3:+23593181 MS.gene90491:CDS
AGGTAGGCTTAGTAGTGTTA+AGG 0.422729 8.3:+23593993 MS.gene90491:CDS
TTTGGCATTTCATCAATTCA+TGG 0.423295 8.3:+23593422 MS.gene90491:CDS
TAAAAGATATGTATAAATTG+AGG 0.446283 8.3:-23594210 None:intergenic
GGCATTTCCGAAGTAATTCT+CGG 0.456049 8.3:-23593812 None:intergenic
AGCCTGTTGCTGTTAGAAGC+GGG 0.459507 8.3:+23594076 MS.gene90491:CDS
GAGGTGTTGGATTTGGTTTG+AGG 0.469311 8.3:-23593050 None:intergenic
AAAAGATATGTATAAATTGA+GGG 0.476845 8.3:-23594209 None:intergenic
ATCAATCATGTTGTTGTCGA+TGG 0.491424 8.3:+23593391 MS.gene90491:CDS
CTTTGGCAAGCTGTGATTCG+TGG 0.491749 8.3:+23593712 MS.gene90491:CDS
TTAAGTGTTGGAAGCTTCGA+TGG 0.495846 8.3:-23593472 None:intergenic
AGCTTCCAACACTTAATCGT+TGG 0.496175 8.3:+23593479 MS.gene90491:CDS
GTGAAATGGAAAATCCTCTC+AGG 0.496490 8.3:-23593601 None:intergenic
GGAACGATAACTATGTTTAG+TGG 0.508616 8.3:+23594117 MS.gene90491:CDS
GAACGATAACTATGTTTAGT+GGG 0.510514 8.3:+23594118 MS.gene90491:CDS
AGCCTACCTTGAAACAACCT+TGG 0.510659 8.3:-23593979 None:intergenic
CCGAAGTAATTCTCGGGCAA+AGG 0.515823 8.3:-23593805 None:intergenic
ATGTTTAGTGGGGCAGAAGA+AGG 0.527980 8.3:+23594129 MS.gene90491:CDS
AGAAAACAAGAGTTGATGAA+AGG 0.528232 8.3:-23593081 None:intergenic
GAAAACAAGAGTTGATGAAA+GGG 0.528741 8.3:-23593080 None:intergenic
GGAAATGCCTTGCAGGTTGG+TGG 0.536401 8.3:+23593826 MS.gene90491:CDS
ATGAGACGACCGGTGAGGGG+TGG 0.536608 8.3:-23593106 None:intergenic
TGAGGAGAAACTATGAAAGT+TGG 0.536823 8.3:+23593947 MS.gene90491:CDS
GCATTTCCGAAGTAATTCTC+GGG 0.542365 8.3:-23593811 None:intergenic
AAGTAATTCTCGGGCAAAGG+TGG 0.543022 8.3:-23593802 None:intergenic
GAGGAGAAACTATGAAAGTT+GGG 0.544119 8.3:+23593948 MS.gene90491:CDS
AATGATGAGACGACCGGTGA+GGG 0.544298 8.3:-23593110 None:intergenic
CCTTTGCCCGAGAATTACTT+CGG 0.547729 8.3:+23593805 MS.gene90491:CDS
ATCCAAGGTTGTTTCAAGGT+AGG 0.548103 8.3:+23593977 MS.gene90491:CDS
TTCGGAAATGCCTTGCAGGT+TGG 0.554030 8.3:+23593823 MS.gene90491:CDS
TGAGACGACCGGTGAGGGGT+GGG 0.555527 8.3:-23593105 None:intergenic
GCCTGTTGCTGTTAGAAGCG+GGG 0.558922 8.3:+23594077 MS.gene90491:CDS
GTAACTTGAACTGCAAGCAA+TGG 0.569233 8.3:-23593334 None:intergenic
AAGCCTGTTGCTGTTAGAAG+CGG 0.572484 8.3:+23594075 MS.gene90491:CDS
AGAAACCAACGATTAAGTGT+TGG 0.580659 8.3:-23593484 None:intergenic
CCTGTTGCTGTTAGAAGCGG+GGG 0.582350 8.3:+23594078 MS.gene90491:CDS
TTACCATAAACATCAAACCT+TGG 0.582755 8.3:-23594036 None:intergenic
GCAAGGGAATTACTTGCTGA+AGG 0.591175 8.3:+23593862 MS.gene90491:CDS
AAATGGAAAATCCTCTCAGG+TGG 0.591822 8.3:-23593598 None:intergenic
TATAAAATTTCCATCCACAA+AGG 0.594467 8.3:+23593528 MS.gene90491:CDS
TCGTGGTCAGAATATCGATC+CGG 0.596096 8.3:+23593729 MS.gene90491:CDS
TGGCAACTAGTAGTTCTCCA+AGG 0.596495 8.3:+23594019 MS.gene90491:CDS
GTGGTGTGAAAGTGAAAGCA+AGG 0.599974 8.3:+23593845 MS.gene90491:CDS
CACGAATCACAGCTTGCCAA+AGG 0.614383 8.3:-23593711 None:intergenic
AAAATTTCCATCCACAAAGG+AGG 0.623863 8.3:+23593531 MS.gene90491:CDS
ACGCACCTAGATTGTTACAA+AGG 0.626814 8.3:-23593186 None:intergenic
ATGTTCAATGATGAGACGAC+CGG 0.630993 8.3:-23593116 None:intergenic
GTTACAAAGGATGCAACATG+AGG 0.639280 8.3:-23593173 None:intergenic
GAAATCAAAAGCTAACGAAG+AGG 0.643741 8.3:+23593645 MS.gene90491:CDS
TTTCACACCACCAACCTGCA+AGG 0.645939 8.3:-23593833 None:intergenic
GAACATCAAGAAGAAGAAGA+CGG 0.649390 8.3:+23593133 MS.gene90491:CDS
ATGATGAGACGACCGGTGAG+GGG 0.660103 8.3:-23593109 None:intergenic
CAATGATGAGACGACCGGTG+AGG 0.661803 8.3:-23593111 None:intergenic
TCATGGTCTGAAATCTCACG+TGG 0.682326 8.3:+23593439 MS.gene90491:CDS
AACGATAACTATGTTTAGTG+GGG 0.682828 8.3:+23594119 MS.gene90491:CDS
AAAACTCTATTCCACCTGAG+AGG 0.686471 8.3:+23593587 MS.gene90491:CDS
TGGTGTGAAAGTGAAAGCAA+GGG 0.721745 8.3:+23593846 MS.gene90491:CDS
CACATTGTGATGATACTGTG+AGG 0.773763 8.3:+23593929 MS.gene90491:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTTTTTACTTTATTAAA+CGG - chr8.3:23593298-23593317 None:intergenic 10.0%
!! AAAAGATATGTATAAATTGA+GGG - chr8.3:23594212-23594231 None:intergenic 15.0%
!! TAAAAGATATGTATAAATTG+AGG - chr8.3:23594213-23594232 None:intergenic 15.0%
!! AATAAAGTAAAAAACTACGA+AGG + chr8.3:23593301-23593320 MS.gene90491:CDS 20.0%
!!! AGAAGATATTTTGTTTGTAT+TGG - chr8.3:23593671-23593690 None:intergenic 20.0%
!!! TTGTCTTTCTTATGATATTT+TGG + chr8.3:23594170-23594189 MS.gene90491:CDS 20.0%
! TATAAAATTTCCATCCACAA+AGG + chr8.3:23593528-23593547 MS.gene90491:CDS 25.0%
!! TAATTTTCTCCTTTGTGAAA+TGG - chr8.3:23593618-23593637 None:intergenic 25.0%
!! TTTGTGGATGGAAATTTTAT+AGG - chr8.3:23593529-23593548 None:intergenic 25.0%
!!! GATGTTTATGGTAATGATTT+TGG + chr8.3:23594045-23594064 MS.gene90491:CDS 25.0%
!!! TCTTTCTTATGATATTTTGG+AGG + chr8.3:23594173-23594192 MS.gene90491:CDS 25.0%
!!! TTATGGTAATGATTTTGGTT+GGG + chr8.3:23594050-23594069 MS.gene90491:CDS 25.0%
!!! TTTATGGTAATGATTTTGGT+TGG + chr8.3:23594049-23594068 MS.gene90491:CDS 25.0%
AACGATAACTATGTTTAGTG+GGG + chr8.3:23594119-23594138 MS.gene90491:CDS 30.0%
CAATACATGATTTCTTCTTC+CGG - chr8.3:23593751-23593770 None:intergenic 30.0%
GAACGATAACTATGTTTAGT+GGG + chr8.3:23594118-23594137 MS.gene90491:CDS 30.0%
TGTTTAGTCATTGATGTTAG+AGG + chr8.3:23593769-23593788 MS.gene90491:CDS 30.0%
TTACCATAAACATCAAACCT+TGG - chr8.3:23594039-23594058 None:intergenic 30.0%
TTTGGCATTTCATCAATTCA+TGG + chr8.3:23593422-23593441 MS.gene90491:CDS 30.0%
! AAAAATCCAAGGTTGTTTCA+AGG + chr8.3:23593973-23593992 MS.gene90491:CDS 30.0%
! TATGAAAGAGTAGTCCTTTT+TGG - chr8.3:23593009-23593028 None:intergenic 30.0%
!! AGAAAACAAGAGTTGATGAA+AGG - chr8.3:23593084-23593103 None:intergenic 30.0%
!! GAAAACAAGAGTTGATGAAA+GGG - chr8.3:23593083-23593102 None:intergenic 30.0%
!! TATGATATTTTGGAGGCTAT+GGG + chr8.3:23594180-23594199 MS.gene90491:CDS 30.0%
!! TTATGATATTTTGGAGGCTA+TGG + chr8.3:23594179-23594198 MS.gene90491:CDS 30.0%
!!! TATGGTAATGATTTTGGTTG+GGG + chr8.3:23594051-23594070 MS.gene90491:CDS 30.0%
!!! TTCTTTATTTTCCTCCTTTG+TGG - chr8.3:23593545-23593564 None:intergenic 30.0%
AAAAAAGAGCGAACAATGGA+AGG - chr8.3:23593274-23593293 None:intergenic 35.0%
AAAATTTCCATCCACAAAGG+AGG + chr8.3:23593531-23593550 MS.gene90491:CDS 35.0%
AAAGTTGGGTGAAAAATCCA+AGG + chr8.3:23593962-23593981 MS.gene90491:CDS 35.0%
ACAATGGAAGGAACATAGTT+TGG - chr8.3:23593262-23593281 None:intergenic 35.0%
AGAAACCAACGATTAAGTGT+TGG - chr8.3:23593487-23593506 None:intergenic 35.0%
ATCAATCATGTTGTTGTCGA+TGG + chr8.3:23593391-23593410 MS.gene90491:CDS 35.0%
GAAATCAAAAGCTAACGAAG+AGG + chr8.3:23593645-23593664 MS.gene90491:CDS 35.0%
GAACATCAAGAAGAAGAAGA+CGG + chr8.3:23593133-23593152 MS.gene90491:CDS 35.0%
GAGGAGAAACTATGAAAGTT+GGG + chr8.3:23593948-23593967 MS.gene90491:CDS 35.0%
GGAACGATAACTATGTTTAG+TGG + chr8.3:23594117-23594136 MS.gene90491:CDS 35.0%
TCTCCAAGGTTTGATGTTTA+TGG + chr8.3:23594033-23594052 MS.gene90491:CDS 35.0%
TGAGGAGAAACTATGAAAGT+TGG + chr8.3:23593947-23593966 MS.gene90491:CDS 35.0%
TGCATCCTTTGTAACAATCT+AGG + chr8.3:23593181-23593200 MS.gene90491:CDS 35.0%
! GAGGATTTTCCATTTCACAA+AGG + chr8.3:23593606-23593625 MS.gene90491:CDS 35.0%
! TTATTTTCCTCCTTTGTGGA+TGG - chr8.3:23593541-23593560 None:intergenic 35.0%
! TTGTGTTTTCAGCTATTGCA+TGG - chr8.3:23593219-23593238 None:intergenic 35.0%
!! AAGCACTTTTAACTCACCTT+TGG + chr8.3:23593695-23593714 MS.gene90491:CDS 35.0%
!! ATTTGGTTTGAGGTGTCATT+TGG - chr8.3:23593043-23593062 None:intergenic 35.0%
!! TTTGGTTTGAGGTGTCATTT+GGG - chr8.3:23593042-23593061 None:intergenic 35.0%
!!! CTTGTTGATGGCATTTTCAT+TGG + chr8.3:23593361-23593380 MS.gene90491:CDS 35.0%
!!! TGTTTTTGAGGTGTTGGATT+TGG - chr8.3:23593060-23593079 None:intergenic 35.0%
!!! TTGATGAAAGGGTGTTTTTG+AGG - chr8.3:23593072-23593091 None:intergenic 35.0%
AAAACTCTATTCCACCTGAG+AGG + chr8.3:23593587-23593606 MS.gene90491:CDS 40.0%
AAATGGAAAATCCTCTCAGG+TGG - chr8.3:23593601-23593620 None:intergenic 40.0%
ACGCACCTAGATTGTTACAA+AGG - chr8.3:23593189-23593208 None:intergenic 40.0%
AGCTTCCAACACTTAATCGT+TGG + chr8.3:23593479-23593498 MS.gene90491:CDS 40.0%
AGGTAGGCTTAGTAGTGTTA+AGG + chr8.3:23593993-23594012 MS.gene90491:CDS 40.0%
ATGTTCAATGATGAGACGAC+CGG - chr8.3:23593119-23593138 None:intergenic 40.0%
CACATTGTGATGATACTGTG+AGG + chr8.3:23593929-23593948 MS.gene90491:CDS 40.0%
CGGAAAAAAAGAGCGAACAA+TGG - chr8.3:23593278-23593297 None:intergenic 40.0%
GCATTTCCGAAGTAATTCTC+GGG - chr8.3:23593814-23593833 None:intergenic 40.0%
GCTTAGTAGTGTTAAGGCTT+TGG + chr8.3:23593999-23594018 MS.gene90491:CDS 40.0%
GGCATTTCCGAAGTAATTCT+CGG - chr8.3:23593815-23593834 None:intergenic 40.0%
GTAACTTGAACTGCAAGCAA+TGG - chr8.3:23593337-23593356 None:intergenic 40.0%
GTGAAATGGAAAATCCTCTC+AGG - chr8.3:23593604-23593623 None:intergenic 40.0%
GTTACAAAGGATGCAACATG+AGG - chr8.3:23593176-23593195 None:intergenic 40.0%
TGGTGTGAAAGTGAAAGCAA+GGG + chr8.3:23593846-23593865 MS.gene90491:CDS 40.0%
! ATCCAAGGTTGTTTCAAGGT+AGG + chr8.3:23593977-23593996 MS.gene90491:CDS 40.0%
! TTGTCGATGGTAAGTCGTTT+TGG + chr8.3:23593404-23593423 MS.gene90491:CDS 40.0%
!! CAAGTTACTGAGCTTGTTGA+TGG + chr8.3:23593349-23593368 MS.gene90491:CDS 40.0%
!! TTAAGTGTTGGAAGCTTCGA+TGG - chr8.3:23593475-23593494 None:intergenic 40.0%
!!! AAAGGGTGTTTTTGAGGTGT+TGG - chr8.3:23593066-23593085 None:intergenic 40.0%
!!! TGAGGTGTCATTTGGGTTTT+GGG - chr8.3:23593035-23593054 None:intergenic 40.0%
!!! TTGAGGTGTCATTTGGGTTT+TGG - chr8.3:23593036-23593055 None:intergenic 40.0%
AAGTAATTCTCGGGCAAAGG+TGG - chr8.3:23593805-23593824 None:intergenic 45.0%
AGCCTACCTTGAAACAACCT+TGG - chr8.3:23593982-23594001 None:intergenic 45.0%
ATGTTTAGTGGGGCAGAAGA+AGG + chr8.3:23594129-23594148 MS.gene90491:CDS 45.0%
CCTTTGCCCGAGAATTACTT+CGG + chr8.3:23593805-23593824 MS.gene90491:CDS 45.0%
GTGGTGTGAAAGTGAAAGCA+AGG + chr8.3:23593845-23593864 MS.gene90491:CDS 45.0%
TCGTGGTCAGAATATCGATC+CGG + chr8.3:23593729-23593748 MS.gene90491:CDS 45.0%
TGGCAACTAGTAGTTCTCCA+AGG + chr8.3:23594019-23594038 MS.gene90491:CDS 45.0%
TTACTTCGGAAATGCCTTGC+AGG + chr8.3:23593819-23593838 MS.gene90491:CDS 45.0%
! AAGCCTGTTGCTGTTAGAAG+CGG + chr8.3:23594075-23594094 MS.gene90491:CDS 45.0%
! GCAAGGGAATTACTTGCTGA+AGG + chr8.3:23593862-23593881 MS.gene90491:CDS 45.0%
! GGGGGTGCAAATAAAAGTGA+TGG + chr8.3:23594096-23594115 MS.gene90491:CDS 45.0%
! TCATGGTCTGAAATCTCACG+TGG + chr8.3:23593439-23593458 MS.gene90491:CDS 45.0%
!! GAGGTGTTGGATTTGGTTTG+AGG - chr8.3:23593053-23593072 None:intergenic 45.0%
!! TTACTTGCTGAAGGAGCGTT+TGG + chr8.3:23593871-23593890 MS.gene90491:CDS 45.0%
!!! GAGGTGTCATTTGGGTTTTG+GGG - chr8.3:23593034-23593053 None:intergenic 45.0%
AATGATGAGACGACCGGTGA+GGG - chr8.3:23593113-23593132 None:intergenic 50.0%
CACGAATCACAGCTTGCCAA+AGG - chr8.3:23593714-23593733 None:intergenic 50.0%
CCGAAGTAATTCTCGGGCAA+AGG - chr8.3:23593808-23593827 None:intergenic 50.0%
CTTTGGCAAGCTGTGATTCG+TGG + chr8.3:23593712-23593731 MS.gene90491:CDS 50.0%
TTCGGAAATGCCTTGCAGGT+TGG + chr8.3:23593823-23593842 MS.gene90491:CDS 50.0%
TTTCACACCACCAACCTGCA+AGG - chr8.3:23593836-23593855 None:intergenic 50.0%
! AGCCTGTTGCTGTTAGAAGC+GGG + chr8.3:23594076-23594095 MS.gene90491:CDS 50.0%
ATGATGAGACGACCGGTGAG+GGG - chr8.3:23593112-23593131 None:intergenic 55.0%
CAATGATGAGACGACCGGTG+AGG - chr8.3:23593114-23593133 None:intergenic 55.0%
! CCTGTTGCTGTTAGAAGCGG+GGG + chr8.3:23594078-23594097 MS.gene90491:CDS 55.0%
! GCCTGTTGCTGTTAGAAGCG+GGG + chr8.3:23594077-23594096 MS.gene90491:CDS 55.0%
! GGAAATGCCTTGCAGGTTGG+TGG + chr8.3:23593826-23593845 MS.gene90491:CDS 55.0%
! GTTTTCTTCCCACCCCTCAC+CGG + chr8.3:23593097-23593116 MS.gene90491:CDS 55.0%
CCCCCGCTTCTAACAGCAAC+AGG - chr8.3:23594081-23594100 None:intergenic 60.0%
ATGAGACGACCGGTGAGGGG+TGG - chr8.3:23593109-23593128 None:intergenic 65.0%
TGAGACGACCGGTGAGGGGT+GGG - chr8.3:23593108-23593127 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 23593001 23594233 23593001 ID=MS.gene90491
chr8.3 mRNA 23593001 23594233 23593001 ID=MS.gene90491.t1;Parent=MS.gene90491
chr8.3 exon 23593001 23594233 23593001 ID=MS.gene90491.t1.exon1;Parent=MS.gene90491.t1
chr8.3 CDS 23593001 23594233 23593001 ID=cds.MS.gene90491.t1;Parent=MS.gene90491.t1
Gene Sequence

>MS.gene90491

ATGAACCAAAAAGGACTACTCTTTCATAATCCCCAAAACCCAAATGACACCTCAAACCAAATCCAACACCTCAAAAACACCCTTTCATCAACTCTTGTTTTCTTCCCACCCCTCACCGGTCGTCTCATCATTGAACATCAAGAAGAAGAAGACGGCGACAACAACAACACAACCTCATGTTGCATCCTTTGTAACAATCTAGGTGCGTTATTTATCCATGCAATAGCTGAAAACACAAGTGTCTCTGATATTCTTAAACCAAACTATGTTCCTTCCATTGTTCGCTCTTTTTTTCCGTTTAATAAAGTAAAAAACTACGAAGGCACATCAAAACCATTGCTTGCAGTTCAAGTTACTGAGCTTGTTGATGGCATTTTCATTGGCTTTTCAATCAATCATGTTGTTGTCGATGGTAAGTCGTTTTGGCATTTCATCAATTCATGGTCTGAAATCTCACGTGGTTTTGATCGACCATCGAAGCTTCCAACACTTAATCGTTGGTTTCTCGATGACTCAATTGAAATTCCTATAAAATTTCCATCCACAAAGGAGGAAAATAAAGAAAGTACTGAAGCTGAAACTGATGAAAACTCTATTCCACCTGAGAGGATTTTCCATTTCACAAAGGAGAAAATTACGAAACTGAAATCAAAAGCTAACGAAGAGGCCAATACAAACAAAATATCTTCTTTACAAGCACTTTTAACTCACCTTTGGCAAGCTGTGATTCGTGGTCAGAATATCGATCCGGAAGAAGAAATCATGTATTGTTTAGTCATTGATGTTAGAGGCAGAATTATTCCACCTTTGCCCGAGAATTACTTCGGAAATGCCTTGCAGGTTGGTGGTGTGAAAGTGAAAGCAAGGGAATTACTTGCTGAAGGAGCGTTTGGAAAAGTTGCTTTTGAGATGAATAAGATGATAGCTTCACATTGTGATGATACTGTGAGGAGAAACTATGAAAGTTGGGTGAAAAATCCAAGGTTGTTTCAAGGTAGGCTTAGTAGTGTTAAGGCTTTGGCAACTAGTAGTTCTCCAAGGTTTGATGTTTATGGTAATGATTTTGGTTGGGGTAAGCCTGTTGCTGTTAGAAGCGGGGGTGCAAATAAAAGTGATGGAACGATAACTATGTTTAGTGGGGCAGAAGAAGGTAGTATTGATGTTGAAGTTTGTCTTTCTTATGATATTTTGGAGGCTATGGGAAATGACCCTCAATTTATACATATCTTTTAA

Protein sequence

>MS.gene90491.t1

MNQKGLLFHNPQNPNDTSNQIQHLKNTLSSTLVFFPPLTGRLIIEHQEEEDGDNNNTTSCCILCNNLGALFIHAIAENTSVSDILKPNYVPSIVRSFFPFNKVKNYEGTSKPLLAVQVTELVDGIFIGFSINHVVVDGKSFWHFINSWSEISRGFDRPSKLPTLNRWFLDDSIEIPIKFPSTKEENKESTEAETDENSIPPERIFHFTKEKITKLKSKANEEANTNKISSLQALLTHLWQAVIRGQNIDPEEEIMYCLVIDVRGRIIPPLPENYFGNALQVGGVKVKARELLAEGAFGKVAFEMNKMIASHCDDTVRRNYESWVKNPRLFQGRLSSVKALATSSSPRFDVYGNDFGWGKPVAVRSGGANKSDGTITMFSGAEEGSIDVEVCLSYDILEAMGNDPQFIHIF