AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069767

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069767.t1 MTR_4g094835 62.914 453 147 11 5 450 4 442 0.0 537
MS.gene069767.t1 MTR_4g094838 61.589 453 142 11 5 450 1 428 0.0 516
MS.gene069767.t1 MTR_4g094842 56.156 463 164 12 5 450 4 444 9.65e-167 477
MS.gene069767.t1 MTR_4g094832 65.067 375 115 8 87 450 57 426 3.10e-163 468
MS.gene069767.t1 MTR_4g094828 54.486 457 175 11 5 446 4 442 4.47e-160 460
MS.gene069767.t1 MTR_0190s0020 53.084 454 190 10 3 450 2 438 4.66e-160 460
MS.gene069767.t1 MTR_8g079710 54.566 449 180 10 5 445 4 436 9.60e-157 451
MS.gene069767.t1 MTR_8g041770 52.980 453 191 11 3 450 2 437 1.74e-156 451
MS.gene069767.t1 MTR_4g022290 53.880 451 182 10 5 446 4 437 6.60e-153 442
MS.gene069767.t1 MTR_4g022825 51.852 459 180 12 6 450 5 436 4.85e-148 429
MS.gene069767.t1 MTR_3g088420 54.483 435 167 14 26 450 16 429 7.64e-143 416
MS.gene069767.t1 MTR_3g026310 49.574 470 188 14 3 450 2 444 2.34e-142 415
MS.gene069767.t1 MTR_4g022720 50.549 455 189 12 5 450 4 431 5.97e-140 408
MS.gene069767.t1 MTR_4g022670 50.759 461 185 12 5 450 4 437 1.54e-139 407
MS.gene069767.t1 MTR_4g022800 49.676 463 190 13 4 450 3 438 1.95e-137 402
MS.gene069767.t1 MTR_7g026860 49.241 461 189 14 5 450 4 434 9.35e-136 398
MS.gene069767.t1 MTR_4g022760 44.469 461 170 12 5 450 4 393 4.98e-113 338
MS.gene069767.t1 MTR_3g101900 40.835 431 232 13 31 450 26 444 4.90e-90 281
MS.gene069767.t1 MTR_3g101930 40.000 435 229 11 35 450 30 451 5.40e-88 276
MS.gene069767.t1 MTR_3g101960 39.294 425 240 11 35 449 29 445 1.88e-85 269
MS.gene069767.t1 MTR_3g102010 39.161 429 237 11 35 450 30 447 3.71e-85 269
MS.gene069767.t1 MTR_3g102020 39.110 427 241 11 35 450 29 447 4.00e-85 268
MS.gene069767.t1 MTR_6g016815 40.235 425 168 13 31 450 34 377 1.13e-83 262
MS.gene069767.t1 MTR_3g101970 38.298 423 236 11 35 450 29 433 6.44e-83 262
MS.gene069767.t1 MTR_5g081960 32.983 476 243 13 33 450 25 482 2.30e-69 228
MS.gene069767.t1 MTR_3g070170 33.113 453 253 11 33 451 31 467 4.92e-69 227
MS.gene069767.t1 MTR_8g040780 52.336 214 91 5 241 449 20 227 3.10e-65 210
MS.gene069767.t1 MTR_4g015180 31.590 478 254 11 30 450 22 483 2.61e-63 213
MS.gene069767.t1 MTR_8g040760 50.877 228 95 8 6 231 5 217 5.00e-60 196
MS.gene069767.t1 MTR_4g094825 59.677 186 60 6 16 196 73 248 2.16e-59 199
MS.gene069767.t1 MTR_4g094825 60.544 147 47 2 304 450 252 387 2.64e-52 181
MS.gene069767.t1 MTR_7g026850 53.289 152 60 4 49 199 21 162 1.03e-46 159
MS.gene069767.t1 MTR_3g102030 33.929 336 179 11 84 408 17 320 1.03e-45 161
MS.gene069767.t1 MTR_6g034495 52.027 148 60 4 59 203 26 165 7.13e-42 146
MS.gene069767.t1 MTR_7g026770 42.781 187 86 3 152 337 123 289 5.09e-37 137
MS.gene069767.t1 MTR_6g045553 28.416 461 269 16 31 450 31 471 7.15e-36 138
MS.gene069767.t1 MTR_6g034485 50.388 129 57 3 206 331 1 125 3.41e-34 124
MS.gene069767.t1 MTR_7g026830 58.140 86 33 2 101 185 14 97 1.90e-26 102
MS.gene069767.t1 MTR_4g007540 26.098 387 250 11 73 441 56 424 1.04e-25 109
MS.gene069767.t1 MTR_8g075610 26.154 390 246 18 73 443 47 413 4.02e-23 101
MS.gene069767.t1 MTR_8g096530 27.350 351 218 12 68 403 54 382 6.19e-23 101
MS.gene069767.t1 MTR_3g026950 24.541 436 266 16 41 439 28 437 1.42e-22 100
MS.gene069767.t1 MTR_2g064495 26.494 385 240 17 73 436 56 418 1.89e-22 99.8
MS.gene069767.t1 MTR_3g049150 23.557 433 256 12 49 439 34 433 4.07e-22 99.0
MS.gene069767.t1 MTR_3g098980 26.147 436 259 19 40 441 20 426 4.40e-22 98.6
MS.gene069767.t1 MTR_2g105330 26.234 385 241 16 73 436 56 418 6.49e-22 98.2
MS.gene069767.t1 MTR_4g127650 23.963 434 283 16 30 435 26 440 4.42e-20 92.8
MS.gene069767.t1 MTR_4g055170 24.611 321 216 10 53 359 49 357 3.21e-19 90.1
MS.gene069767.t1 MTR_4g097090 24.256 437 275 17 32 435 27 440 4.02e-19 89.7
MS.gene069767.t1 MTR_5g084870 24.396 414 236 18 36 415 17 387 8.35e-19 89.0
MS.gene069767.t1 MTR_8g079970 24.163 418 248 16 36 420 17 398 1.46e-18 88.2
MS.gene069767.t1 MTR_5g084850 24.374 439 273 18 36 450 17 420 7.79e-18 85.9
MS.gene069767.t1 MTR_7g027175 23.227 409 237 15 68 441 63 429 7.63e-17 82.8
MS.gene069767.t1 MTR_3g071320 26.316 323 208 8 33 339 24 332 1.27e-16 82.0
MS.gene069767.t1 MTR_8g079980 24.384 406 257 18 36 418 17 395 6.44e-16 80.1
MS.gene069767.t1 MTR_6g015315 22.738 409 265 13 67 444 57 445 1.36e-15 79.0
MS.gene069767.t1 MTR_6g015320 21.836 403 256 12 43 406 27 409 6.35e-15 77.0
MS.gene069767.t1 MTR_4g013050 24.528 371 185 14 71 404 51 363 4.29e-14 74.3
MS.gene069767.t1 MTR_6g015850 23.383 402 261 14 69 442 66 448 5.22e-14 74.3
MS.gene069767.t1 MTR_7g084940 27.348 362 202 16 69 403 65 392 1.65e-13 72.8
MS.gene069767.t1 MTR_3g112180 26.103 272 168 9 70 323 58 314 2.55e-13 72.0
MS.gene069767.t1 MTR_1g040195 24.000 375 249 13 83 441 51 405 3.38e-13 71.6
MS.gene069767.t1 MTR_1g040175 23.919 393 259 16 70 443 61 432 5.42e-13 71.2
MS.gene069767.t1 MTR_7g086000 27.792 403 230 20 73 435 60 441 1.50e-12 69.7
MS.gene069767.t1 MTR_6g015830 23.596 445 282 17 33 443 32 452 1.63e-12 69.7
MS.gene069767.t1 MTR_3g028210 23.235 439 284 17 33 436 29 449 4.42e-12 68.2
MS.gene069767.t1 MTR_7g085930 24.927 341 202 15 52 362 40 356 6.45e-12 67.8
MS.gene069767.t1 MTR_2g089670 22.384 411 257 17 32 403 42 429 4.34e-11 65.1
MS.gene069767.t1 MTR_7g026880 56.000 50 20 1 401 450 2 49 5.78e-11 58.2
MS.gene069767.t1 MTR_7g026800 37.209 129 49 5 239 367 38 134 5.99e-11 62.0
MS.gene069767.t1 MTR_5g026320 25.054 467 249 22 30 449 36 448 7.49e-11 64.3
MS.gene069767.t1 MTR_3g049140 24.757 206 144 3 243 439 27 230 9.76e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069767.t1 AT5G67150 41.394 459 243 10 1 450 1 442 5.68e-107 325
MS.gene069767.t1 AT3G50270 39.540 435 247 9 24 450 18 444 3.53e-96 297
MS.gene069767.t1 AT3G50300 41.429 420 227 11 24 435 16 424 5.39e-91 283
MS.gene069767.t1 AT3G50280 38.940 434 248 8 26 452 18 441 2.27e-90 281
MS.gene069767.t1 AT5G67160 39.486 428 225 13 31 449 25 427 5.53e-88 275
MS.gene069767.t1 AT5G38130 39.683 441 237 14 6 435 20 442 3.27e-87 274
MS.gene069767.t1 AT5G42830 37.413 433 245 11 31 450 26 445 1.01e-79 254
MS.gene069767.t1 AT5G07850 37.150 428 248 12 35 450 31 449 1.45e-74 241
MS.gene069767.t1 AT5G07860 37.793 426 244 11 35 450 31 445 2.22e-74 241
MS.gene069767.t1 AT2G39980 31.838 468 251 11 33 450 27 476 4.64e-68 225
MS.gene069767.t1 AT5G07870 34.615 442 248 11 35 450 31 457 3.06e-67 222
MS.gene069767.t1 AT5G01210 33.991 456 248 11 33 450 25 465 3.32e-66 220
MS.gene069767.t1 AT3G50280 38.854 314 182 6 146 452 1 311 7.57e-61 201
MS.gene069767.t1 AT3G50290 41.071 280 140 9 134 401 3 269 2.96e-49 169
MS.gene069767.t1 AT5G23940 32.360 445 259 17 31 450 21 448 1.49e-48 173
MS.gene069767.t1 AT2G19070 25.734 443 274 13 38 443 19 443 1.08e-23 103
MS.gene069767.t1 AT5G48930 25.594 379 250 14 73 435 56 418 2.72e-21 96.3
MS.gene069767.t1 AT5G41040 25.945 397 245 14 67 441 63 432 4.51e-21 95.5
MS.gene069767.t1 AT5G41040 26.076 395 243 14 69 441 81 448 4.53e-21 95.9
MS.gene069767.t1 AT3G29590 26.107 429 279 12 43 445 26 442 5.66e-19 89.4
MS.gene069767.t1 AT3G48720 25.260 384 252 13 73 442 61 423 6.98e-19 89.0
MS.gene069767.t1 AT3G26040 25.907 386 225 15 70 430 56 405 6.35e-17 83.2
MS.gene069767.t1 AT5G63560 22.835 381 249 12 73 436 61 413 1.45e-15 79.0
MS.gene069767.t1 AT5G57840 24.769 432 255 20 39 435 26 422 2.94e-15 78.2
MS.gene069767.t1 AT1G24430 24.259 371 234 13 71 427 60 397 3.20e-14 74.7
MS.gene069767.t1 AT5G39090 24.714 437 286 17 13 428 8 422 4.20e-14 74.7
MS.gene069767.t1 AT1G24420 23.599 339 222 12 84 412 76 387 4.68e-14 74.3
MS.gene069767.t1 AT1G24420 23.599 339 222 12 84 412 76 387 4.68e-14 74.3
MS.gene069767.t1 AT5G61160 26.250 400 246 18 39 404 19 403 5.32e-14 74.3
MS.gene069767.t1 AT5G07080 24.211 285 167 10 74 333 71 331 8.89e-13 70.5
MS.gene069767.t1 AT4G15390 22.004 459 277 18 28 451 24 436 2.14e-12 69.3
MS.gene069767.t1 AT4G15390 22.004 459 277 18 28 451 24 436 2.14e-12 69.3
MS.gene069767.t1 AT5G39050 25.685 292 176 12 169 428 160 442 4.36e-12 68.2
MS.gene069767.t1 AT1G28680 24.609 256 174 6 161 406 143 389 2.17e-11 66.2
MS.gene069767.t1 AT1G32910 22.826 368 225 12 68 404 60 399 2.41e-11 65.9
MS.gene069767.t1 AT5G16410 23.944 355 225 12 71 404 89 419 6.33e-11 64.7

Find 104 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTCCTCCTTGTGAGATT+TGG 0.215831 6.2:+71249001 None:intergenic
GATTGTTATGGCAATGATTT+TGG 0.220570 6.2:-71248409 MS.gene069767:CDS
TATGCCGTGTCTTCCTTATA+AGG 0.223531 6.2:-71248290 MS.gene069767:CDS
TTTGGCATTTCGTCAATTCT+TGG 0.250224 6.2:-71249026 MS.gene069767:CDS
AGTATTCAAGTGGGAGGATT+TGG 0.279080 6.2:+71249463 None:intergenic
GAAAACGCCAAAGTTGCTTT+TGG 0.279649 6.2:-71248485 MS.gene069767:CDS
GATGATCGGTGTTCAATATC+AGG 0.303838 6.2:+71249411 None:intergenic
GTGTCTTCCTTATAAGGTTT+TGG 0.312319 6.2:-71248284 MS.gene069767:CDS
ACCTCCTCCTTGTGAGATTT+GGG 0.316778 6.2:+71249002 None:intergenic
AACAATAGTGATAATAATAA+TGG 0.319852 6.2:-71249531 MS.gene069767:CDS
GTTCTTTATCTGTTGGTGAT+AGG 0.323886 6.2:-71248697 MS.gene069767:CDS
ATGGCCTCCAAAACCTTATA+AGG 0.338106 6.2:+71248277 None:intergenic
TCTCCGAGGTTTGATTGTTA+TGG 0.339781 6.2:-71248421 MS.gene069767:CDS
CTACTTGATGGCATCTTCAT+TGG 0.346787 6.2:-71249087 MS.gene069767:CDS
CCGCTTGAAGATGAATATTT+CGG 0.358886 6.2:-71248652 MS.gene069767:CDS
TTCTTTATCTGTTGGTGATA+GGG 0.370509 6.2:-71248696 MS.gene069767:CDS
CAGCTAAGTTGATGAACTTA+GGG 0.383094 6.2:+71248884 None:intergenic
AGCCTGTAGCTGTTCGAAAC+GGG 0.384553 6.2:-71248378 MS.gene069767:CDS
GTTGGTTTCTGTGTTTGCTT+TGG 0.400088 6.2:+71248816 None:intergenic
CATCAAGTAGCTCCGTTACT+TGG 0.403820 6.2:+71249100 None:intergenic
TGGGATTGGAAAGGTTGCTT+TGG 0.409665 6.2:-71248575 MS.gene069767:CDS
GGAAGTTCATGAATGTCGTT+TGG 0.411248 6.2:+71248943 None:intergenic
TCAGCTAAGTTGATGAACTT+AGG 0.417284 6.2:+71248883 None:intergenic
GGAAACGGAGGGTTGGTTGA+TGG 0.417494 6.2:-71248631 MS.gene069767:CDS
GTAGGAAAGAGTCGAGGAAA+GGG 0.457408 6.2:+71249356 None:intergenic
GAAGATGAATATTTCGGAAA+CGG 0.458659 6.2:-71248646 MS.gene069767:CDS
GGAAACGACACTGAGTTCAT+AGG 0.462766 6.2:-71248253 MS.gene069767:CDS
GAGTGAAAAGAAGGCCTGTT+TGG 0.464555 6.2:+71249439 None:intergenic
GAAATCCTAGAGTGTGGGAT+TGG 0.466510 6.2:-71248589 MS.gene069767:CDS
CCACTTGAATACTACCAAAC+AGG 0.469233 6.2:-71249453 MS.gene069767:CDS
GAATGAATTCGGTTGTGAAA+GGG 0.469537 6.2:+71248911 None:intergenic
CAAGTAACGGAGCTACTTGA+TGG 0.470242 6.2:-71249099 MS.gene069767:CDS
AGAAGATGTTCTTTATCTGT+TGG 0.472148 6.2:-71248704 MS.gene069767:CDS
TCCTACTTTCCACCCCTCAC+TGG 0.475320 6.2:-71249339 MS.gene069767:CDS
TCACCACCCAAAAGCAACTT+TGG 0.483853 6.2:+71248478 None:intergenic
GTTACTTGGACAGCTAGAAT+CGG 0.485863 6.2:+71249114 None:intergenic
TGAATGAATTCGGTTGTGAA+AGG 0.490416 6.2:+71248910 None:intergenic
TACACCGTTGAGGTGGAAGA+AGG 0.501817 6.2:+71249158 None:intergenic
AGTAGGAAAGAGTCGAGGAA+AGG 0.504852 6.2:+71249355 None:intergenic
CCTTTCCAATCCCACACTCT+AGG 0.505498 6.2:+71248584 None:intergenic
TCTTTATCTGTTGGTGATAG+GGG 0.506505 6.2:-71248695 MS.gene069767:CDS
AAGCCTGTAGCTGTTCGAAA+CGG 0.510658 6.2:-71248379 MS.gene069767:CDS
AACTCCCTTCACTTAAGCGT+TGG 0.511468 6.2:-71248969 MS.gene069767:CDS
TGTTGTGAAGGAATAACAAC+GGG 0.515963 6.2:+71248450 None:intergenic
TCAAGCGGCGGAATCATCCT+TGG 0.516856 6.2:+71248667 None:intergenic
ACCAGTGAGGGGTGGAAAGT+AGG 0.520312 6.2:+71249338 None:intergenic
GAAAATCGATTTGACACCAT+GGG 0.523622 6.2:-71249490 MS.gene069767:CDS
GAAACCAACGCTTAAGTGAA+GGG 0.531069 6.2:+71248965 None:intergenic
CAGGAGGGTGAGTGAAAAGA+AGG 0.536989 6.2:+71249430 None:intergenic
CGGAGAGGAGCTTGTTGTGA+AGG 0.542434 6.2:+71248438 None:intergenic
AACTCCTTCTTCCACCTCAA+CGG 0.545057 6.2:-71249162 MS.gene069767:CDS
TGGAAGAAGGAGTTGACAAT+GGG 0.552183 6.2:+71249171 None:intergenic
TTACTTGGACAGCTAGAATC+GGG 0.552651 6.2:+71249115 None:intergenic
GAACTCAGTGTCGTTTCCCA+TGG 0.554308 6.2:+71248258 None:intergenic
GGAAACCAACGCTTAAGTGA+AGG 0.559439 6.2:+71248964 None:intergenic
GGGGTGCCAATAAAAGAAAT+GGG 0.561088 6.2:-71248357 MS.gene069767:CDS
AAGTTCATCAACTTAGCTGA+AGG 0.582004 6.2:-71248880 MS.gene069767:CDS
CCTGTTTGGTAGTATTCAAG+TGG 0.583011 6.2:+71249453 None:intergenic
CCGAAATATTCATCTTCAAG+CGG 0.589663 6.2:+71248652 None:intergenic
ATGAATATTTCGGAAACGGA+GGG 0.591996 6.2:-71248642 MS.gene069767:CDS
GGGAGGATTTGGAGATCCCA+TGG 0.592303 6.2:+71249474 None:intergenic
TTTGGTAGTATTCAAGTGGG+AGG 0.592616 6.2:+71249457 None:intergenic
ATCTGTGGGTTGAGTGATGT+CGG 0.594670 6.2:+71249206 None:intergenic
TGTTGCGTGGATTGAACTCG+TGG 0.595463 6.2:+71249557 None:intergenic
ATATTTCGGAAACGGAGGGT+TGG 0.596925 6.2:-71248638 MS.gene069767:CDS
GCCTGTAGCTGTTCGAAACG+GGG 0.597766 6.2:-71248377 MS.gene069767:CDS
GCAGGGGAAATCCTAGAGTG+TGG 0.598793 6.2:-71248595 MS.gene069767:CDS
GATGAATATTTCGGAAACGG+AGG 0.599031 6.2:-71248643 MS.gene069767:CDS
GTGGAAGAAGGAGTTGACAA+TGG 0.601282 6.2:+71249170 None:intergenic
GTTGTGAAAGGGAAACGTAT+AGG 0.606163 6.2:+71248922 None:intergenic
AGATAAAGAACATCTTCTTG+TGG 0.607527 6.2:+71248709 None:intergenic
TCCCAAATCTCACAAGGAGG+AGG 0.607901 6.2:-71249003 MS.gene069767:CDS
GGCGGTACAATGTGATCTGT+GGG 0.608096 6.2:+71249192 None:intergenic
GATTCTAGCTGTCCAAGTAA+CGG 0.610165 6.2:-71249112 MS.gene069767:CDS
TTCATCAATTGCAACAATGT+TGG 0.614381 6.2:-71249270 MS.gene069767:CDS
CAGGGGAAATCCTAGAGTGT+GGG 0.618019 6.2:-71248594 MS.gene069767:CDS
GATTACAAGACGACCAGTGA+GGG 0.620871 6.2:+71249326 None:intergenic
AGAAAATCGATTTGACACCA+TGG 0.622583 6.2:-71249491 MS.gene069767:CDS
GGTTGCTTTGGAAATGAACA+AGG 0.624808 6.2:-71248563 MS.gene069767:CDS
GGGCGGTACAATGTGATCTG+TGG 0.626222 6.2:+71249191 None:intergenic
CCTAGAGTGTGGGATTGGAA+AGG 0.633219 6.2:-71248584 MS.gene069767:CDS
CTGTTTGGTAGTATTCAAGT+GGG 0.643686 6.2:+71249454 None:intergenic
GATCGGTGTTCAATATCAGG+AGG 0.649286 6.2:+71249414 None:intergenic
CCTGTAGCTGTTCGAAACGG+GGG 0.651553 6.2:-71248376 MS.gene069767:CDS
AAATATTCATCTTCAAGCGG+CGG 0.654211 6.2:+71248655 None:intergenic
ATCAACCACGTAGTCTCAGA+CGG 0.654874 6.2:-71249057 MS.gene069767:CDS
ACAAGACGACCAGTGAGGGG+TGG 0.661578 6.2:+71249330 None:intergenic
AGGAGTATTCAATTTCACAA+AGG 0.662613 6.2:-71248860 MS.gene069767:CDS
AAGAAGGAGTTGACAATGGG+CGG 0.665866 6.2:+71249174 None:intergenic
GGGTTGAGTGATGTCGGTAA+CGG 0.668173 6.2:+71249212 None:intergenic
TTGCCATAACAATCAAACCT+CGG 0.669143 6.2:+71248418 None:intergenic
TCACAACAAGCTCCTCTCCG+AGG 0.669206 6.2:-71248435 MS.gene069767:CDS
TGGTGATAGGGGTTAGACCA+AGG 0.674472 6.2:-71248684 MS.gene069767:CDS
ATCGGTGTTCAATATCAGGA+GGG 0.675032 6.2:+71249415 None:intergenic
TGGAAAGTAGGAAAGAGTCG+AGG 0.677721 6.2:+71249350 None:intergenic
TTGTTGTGAAGGAATAACAA+CGG 0.680008 6.2:+71248449 None:intergenic
TCTTGGTCCCAAATCTCACA+AGG 0.682313 6.2:-71249009 MS.gene069767:CDS
TGATTACAAGACGACCAGTG+AGG 0.698339 6.2:+71249325 None:intergenic
ATTACAAGACGACCAGTGAG+GGG 0.710977 6.2:+71249327 None:intergenic
AAAACCTTATAAGGAAGACA+CGG 0.715189 6.2:+71248286 None:intergenic
GTTGCAATTGATGAAACACG+AGG 0.723997 6.2:+71249278 None:intergenic
TGGTCCCAAATCTCACAAGG+AGG 0.726951 6.2:-71249006 MS.gene069767:CDS
ATAACAATCAAACCTCGGAG+AGG 0.729545 6.2:+71248423 None:intergenic
ACTGACCGTCTGAGACTACG+TGG 0.752569 6.2:+71249052 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATAGTGATAATAATAA+TGG - chr6.2:71248288-71248307 MS.gene069767:CDS 15.0%
!! ATGATGAGAAAATAAAAAAA+TGG - chr6.2:71249297-71249316 MS.gene069767:CDS 15.0%
!!! TTACATTGTTTTTTGATGAT+CGG + chr6.2:71248425-71248444 None:intergenic 20.0%
! TAAAAAAATGGTATGAGTCT+TGG - chr6.2:71249309-71249328 MS.gene069767:CDS 25.0%
!! AATCTTCCCATTTCTTTTAT+TGG + chr6.2:71249471-71249490 None:intergenic 25.0%
!!! TGTTATTTTCTCAGTTTTGT+TGG + chr6.2:71249024-71249043 None:intergenic 25.0%
AAAACCTTATAAGGAAGACA+CGG + chr6.2:71249536-71249555 None:intergenic 30.0%
AGAAGATGTTCTTTATCTGT+TGG - chr6.2:71249115-71249134 MS.gene069767:CDS 30.0%
AGATAAAGAACATCTTCTTG+TGG + chr6.2:71249113-71249132 None:intergenic 30.0%
GAAGATGAATATTTCGGAAA+CGG - chr6.2:71249173-71249192 MS.gene069767:CDS 30.0%
TTCATCAATTGCAACAATGT+TGG - chr6.2:71248549-71248568 MS.gene069767:CDS 30.0%
TTGTTGTGAAGGAATAACAA+CGG + chr6.2:71249373-71249392 None:intergenic 30.0%
! GATTGTTATGGCAATGATTT+TGG - chr6.2:71249410-71249429 MS.gene069767:CDS 30.0%
!! AGGAGTATTCAATTTCACAA+AGG - chr6.2:71248959-71248978 MS.gene069767:CDS 30.0%
!! ATGGTTTTACAATGAAAGCA+GGG - chr6.2:71249207-71249226 MS.gene069767:CDS 30.0%
!! TTCTTTATCTGTTGGTGATA+GGG - chr6.2:71249123-71249142 MS.gene069767:CDS 30.0%
!!! CTTAGGGTTTTGAATGAATT+CGG + chr6.2:71248922-71248941 None:intergenic 30.0%
!!! TTATGGCAATGATTTTGGTT+GGG - chr6.2:71249415-71249434 MS.gene069767:CDS 30.0%
AAATATTCATCTTCAAGCGG+CGG + chr6.2:71249167-71249186 None:intergenic 35.0%
AAGTTCATCAACTTAGCTGA+AGG - chr6.2:71248939-71248958 MS.gene069767:CDS 35.0%
ATGAATATTTCGGAAACGGA+GGG - chr6.2:71249177-71249196 MS.gene069767:CDS 35.0%
CCGAAATATTCATCTTCAAG+CGG + chr6.2:71249170-71249189 None:intergenic 35.0%
CCGCTTGAAGATGAATATTT+CGG - chr6.2:71249167-71249186 MS.gene069767:CDS 35.0%
GAATGAATTCGGTTGTGAAA+GGG + chr6.2:71248911-71248930 None:intergenic 35.0%
TGAATGAATTCGGTTGTGAA+AGG + chr6.2:71248912-71248931 None:intergenic 35.0%
TGTTGTGAAGGAATAACAAC+GGG + chr6.2:71249372-71249391 None:intergenic 35.0%
TTGCCATAACAATCAAACCT+CGG + chr6.2:71249404-71249423 None:intergenic 35.0%
TTTGGCATTTCGTCAATTCT+TGG - chr6.2:71248793-71248812 MS.gene069767:CDS 35.0%
! AACGGTAATGTTTTCTGCTT+TGG + chr6.2:71248592-71248611 None:intergenic 35.0%
! CTGTTTGGTAGTATTCAAGT+GGG + chr6.2:71248368-71248387 None:intergenic 35.0%
! GAAGATTACTGTGTTTTCTG+GGG - chr6.2:71249484-71249503 MS.gene069767:CDS 35.0%
! GGAAGATTACTGTGTTTTCT+GGG - chr6.2:71249483-71249502 MS.gene069767:CDS 35.0%
! GTGTCTTCCTTATAAGGTTT+TGG - chr6.2:71249535-71249554 MS.gene069767:CDS 35.0%
!! AGAAAATCGATTTGACACCA+TGG - chr6.2:71248328-71248347 MS.gene069767:CDS 35.0%
!! CAGCTAAGTTGATGAACTTA+GGG + chr6.2:71248938-71248957 None:intergenic 35.0%
!! GAAAATCGATTTGACACCAT+GGG - chr6.2:71248329-71248348 MS.gene069767:CDS 35.0%
!! GATGGTTTTACAATGAAAGC+AGG - chr6.2:71249206-71249225 MS.gene069767:CDS 35.0%
!! GTTATGGCAATGATTTTGGT+TGG - chr6.2:71249414-71249433 MS.gene069767:CDS 35.0%
!! GTTCTTTATCTGTTGGTGAT+AGG - chr6.2:71249122-71249141 MS.gene069767:CDS 35.0%
!! TCAGCTAAGTTGATGAACTT+AGG + chr6.2:71248939-71248958 None:intergenic 35.0%
!! TCTTCCTTATAAGGTTTTGG+AGG - chr6.2:71249538-71249557 MS.gene069767:CDS 35.0%
!! TCTTTATCTGTTGGTGATAG+GGG - chr6.2:71249124-71249143 MS.gene069767:CDS 35.0%
!! TGGTTTTACAATGAAAGCAG+GGG - chr6.2:71249208-71249227 MS.gene069767:CDS 35.0%
!!! AAAACGCCAAAGTTGCTTTT+GGG - chr6.2:71249335-71249354 MS.gene069767:CDS 35.0%
!!! CACTATTGTTTTTTGTTGCG+TGG + chr6.2:71248278-71248297 None:intergenic 35.0%
!!! TATGGCAATGATTTTGGTTG+GGG - chr6.2:71249416-71249435 MS.gene069767:CDS 35.0%
ACCTCAACGGTGTAAAAAAC+TGG - chr6.2:71248670-71248689 MS.gene069767:CDS 40.0%
AGTATTCAAGTGGGAGGATT+TGG + chr6.2:71248359-71248378 None:intergenic 40.0%
ATAACAATCAAACCTCGGAG+AGG + chr6.2:71249399-71249418 None:intergenic 40.0%
ATGGCCTCCAAAACCTTATA+AGG + chr6.2:71249545-71249564 None:intergenic 40.0%
CCACTTGAATACTACCAAAC+AGG - chr6.2:71248366-71248385 MS.gene069767:CDS 40.0%
GAAACCAACGCTTAAGTGAA+GGG + chr6.2:71248857-71248876 None:intergenic 40.0%
GATGAATATTTCGGAAACGG+AGG - chr6.2:71249176-71249195 MS.gene069767:CDS 40.0%
GGAAGTTCATGAATGTCGTT+TGG + chr6.2:71248879-71248898 None:intergenic 40.0%
GTTACTTGGACAGCTAGAAT+CGG + chr6.2:71248708-71248727 None:intergenic 40.0%
GTTGCAATTGATGAAACACG+AGG + chr6.2:71248544-71248563 None:intergenic 40.0%
GTTGTGAAAGGGAAACGTAT+AGG + chr6.2:71248900-71248919 None:intergenic 40.0%
TATGCCGTGTCTTCCTTATA+AGG - chr6.2:71249529-71249548 MS.gene069767:CDS 40.0%
TCTCCGAGGTTTGATTGTTA+TGG - chr6.2:71249398-71249417 MS.gene069767:CDS 40.0%
TGGAAGAAGGAGTTGACAAT+GGG + chr6.2:71248651-71248670 None:intergenic 40.0%
TTACTTGGACAGCTAGAATC+GGG + chr6.2:71248707-71248726 None:intergenic 40.0%
! ATCGGTGTTCAATATCAGGA+GGG + chr6.2:71248407-71248426 None:intergenic 40.0%
! CCTGTTTGGTAGTATTCAAG+TGG + chr6.2:71248369-71248388 None:intergenic 40.0%
! CTACTTGATGGCATCTTCAT+TGG - chr6.2:71248732-71248751 MS.gene069767:CDS 40.0%
! GATGATCGGTGTTCAATATC+AGG + chr6.2:71248411-71248430 None:intergenic 40.0%
! GATTCTAGCTGTCCAAGTAA+CGG - chr6.2:71248707-71248726 MS.gene069767:CDS 40.0%
! GGGAAGATTACTGTGTTTTC+TGG - chr6.2:71249482-71249501 MS.gene069767:CDS 40.0%
! GGGGTGCCAATAAAAGAAAT+GGG - chr6.2:71249462-71249481 MS.gene069767:CDS 40.0%
! GTTGGTTTCTGTGTTTGCTT+TGG + chr6.2:71249006-71249025 None:intergenic 40.0%
! TAATGTTTTCTGCTTTGGCG+TGG + chr6.2:71248587-71248606 None:intergenic 40.0%
! TTTGGTAGTATTCAAGTGGG+AGG + chr6.2:71248365-71248384 None:intergenic 40.0%
!! GAAAACGCCAAAGTTGCTTT+TGG - chr6.2:71249334-71249353 MS.gene069767:CDS 40.0%
!! GGTTGCTTTGGAAATGAACA+AGG - chr6.2:71249256-71249275 MS.gene069767:CDS 40.0%
!!! AGTTTTTTACACCGTTGAGG+TGG + chr6.2:71248671-71248690 None:intergenic 40.0%
!!! TATAAGGTTTTGGAGGCCAT+GGG - chr6.2:71249545-71249564 MS.gene069767:CDS 40.0%
!!! TCCAGTTTTTTACACCGTTG+AGG + chr6.2:71248674-71248693 None:intergenic 40.0%
!!! TTATAAGGTTTTGGAGGCCA+TGG - chr6.2:71249544-71249563 MS.gene069767:CDS 40.0%
AACCTCCTCCTTGTGAGATT+TGG + chr6.2:71248821-71248840 None:intergenic 45.0%
AACTCCCTTCACTTAAGCGT+TGG - chr6.2:71248850-71248869 MS.gene069767:CDS 45.0%
AACTCCTTCTTCCACCTCAA+CGG - chr6.2:71248657-71248676 MS.gene069767:CDS 45.0%
AAGAAGGAGTTGACAATGGG+CGG + chr6.2:71248648-71248667 None:intergenic 45.0%
AAGCCTGTAGCTGTTCGAAA+CGG - chr6.2:71249440-71249459 MS.gene069767:CDS 45.0%
ACCTCCTCCTTGTGAGATTT+GGG + chr6.2:71248820-71248839 None:intergenic 45.0%
AGTAGGAAAGAGTCGAGGAA+AGG + chr6.2:71248467-71248486 None:intergenic 45.0%
ATATTTCGGAAACGGAGGGT+TGG - chr6.2:71249181-71249200 MS.gene069767:CDS 45.0%
ATCAACCACGTAGTCTCAGA+CGG - chr6.2:71248762-71248781 MS.gene069767:CDS 45.0%
ATTACAAGACGACCAGTGAG+GGG + chr6.2:71248495-71248514 None:intergenic 45.0%
CATCAAGTAGCTCCGTTACT+TGG + chr6.2:71248722-71248741 None:intergenic 45.0%
GAAATCCTAGAGTGTGGGAT+TGG - chr6.2:71249230-71249249 MS.gene069767:CDS 45.0%
GAGTGAAAAGAAGGCCTGTT+TGG + chr6.2:71248383-71248402 None:intergenic 45.0%
GATTACAAGACGACCAGTGA+GGG + chr6.2:71248496-71248515 None:intergenic 45.0%
GGAAACCAACGCTTAAGTGA+AGG + chr6.2:71248858-71248877 None:intergenic 45.0%
GGAAACGACACTGAGTTCAT+AGG - chr6.2:71249566-71249585 MS.gene069767:CDS 45.0%
GTAGGAAAGAGTCGAGGAAA+GGG + chr6.2:71248466-71248485 None:intergenic 45.0%
GTGGAAGAAGGAGTTGACAA+TGG + chr6.2:71248652-71248671 None:intergenic 45.0%
TCACCACCCAAAAGCAACTT+TGG + chr6.2:71249344-71249363 None:intergenic 45.0%
TCTTGGTCCCAAATCTCACA+AGG - chr6.2:71248810-71248829 MS.gene069767:CDS 45.0%
TGATTACAAGACGACCAGTG+AGG + chr6.2:71248497-71248516 None:intergenic 45.0%
TGGAAAGTAGGAAAGAGTCG+AGG + chr6.2:71248472-71248491 None:intergenic 45.0%
TGGGATTGGAAAGGTTGCTT+TGG - chr6.2:71249244-71249263 MS.gene069767:CDS 45.0%
! ATCTGTGGGTTGAGTGATGT+CGG + chr6.2:71248616-71248635 None:intergenic 45.0%
! CAAGTAACGGAGCTACTTGA+TGG - chr6.2:71248720-71248739 MS.gene069767:CDS 45.0%
! GATCGGTGTTCAATATCAGG+AGG + chr6.2:71248408-71248427 None:intergenic 45.0%
! TCTCAGACGGTCAGTCTTTT+TGG - chr6.2:71248775-71248794 MS.gene069767:CDS 45.0%
!! GGGGGTGCCAATAAAAGAAA+TGG - chr6.2:71249461-71249480 MS.gene069767:CDS 45.0%
AGCCTGTAGCTGTTCGAAAC+GGG - chr6.2:71249441-71249460 MS.gene069767:CDS 50.0%
CAGGAGGGTGAGTGAAAAGA+AGG + chr6.2:71248392-71248411 None:intergenic 50.0%
CAGGGGAAATCCTAGAGTGT+GGG - chr6.2:71249225-71249244 MS.gene069767:CDS 50.0%
CCTAGAGTGTGGGATTGGAA+AGG - chr6.2:71249235-71249254 MS.gene069767:CDS 50.0%
CCTTTCCAATCCCACACTCT+AGG + chr6.2:71249238-71249257 None:intergenic 50.0%
GGCGGTACAATGTGATCTGT+GGG + chr6.2:71248630-71248649 None:intergenic 50.0%
GGGTTGAGTGATGTCGGTAA+CGG + chr6.2:71248610-71248629 None:intergenic 50.0%
TACACCGTTGAGGTGGAAGA+AGG + chr6.2:71248664-71248683 None:intergenic 50.0%
TCCCAAATCTCACAAGGAGG+AGG - chr6.2:71248816-71248835 MS.gene069767:CDS 50.0%
TGGTCCCAAATCTCACAAGG+AGG - chr6.2:71248813-71248832 MS.gene069767:CDS 50.0%
TGGTGATAGGGGTTAGACCA+AGG - chr6.2:71249135-71249154 MS.gene069767:CDS 50.0%
! TGTTGCGTGGATTGAACTCG+TGG + chr6.2:71248265-71248284 None:intergenic 50.0%
!! GAACTCAGTGTCGTTTCCCA+TGG + chr6.2:71249564-71249583 None:intergenic 50.0%
!!! ACGCCAAAGTTGCTTTTGGG+TGG - chr6.2:71249338-71249357 MS.gene069767:CDS 50.0%
!!! GTGTTTTCTGGGGCTGAAGA+GGG - chr6.2:71249494-71249513 MS.gene069767:CDS 50.0%
!!! TGTGTTTTCTGGGGCTGAAG+AGG - chr6.2:71249493-71249512 MS.gene069767:CDS 50.0%
ACCAGTGAGGGGTGGAAAGT+AGG + chr6.2:71248484-71248503 None:intergenic 55.0%
CCTGTAGCTGTTCGAAACGG+GGG - chr6.2:71249443-71249462 MS.gene069767:CDS 55.0%
GCAGGGGAAATCCTAGAGTG+TGG - chr6.2:71249224-71249243 MS.gene069767:CDS 55.0%
GCCTGTAGCTGTTCGAAACG+GGG - chr6.2:71249442-71249461 MS.gene069767:CDS 55.0%
GGGAGGATTTGGAGATCCCA+TGG + chr6.2:71248348-71248367 None:intergenic 55.0%
GGGCGGTACAATGTGATCTG+TGG + chr6.2:71248631-71248650 None:intergenic 55.0%
TCAAGCGGCGGAATCATCCT+TGG + chr6.2:71249155-71249174 None:intergenic 55.0%
TCACAACAAGCTCCTCTCCG+AGG - chr6.2:71249384-71249403 MS.gene069767:CDS 55.0%
TCCTACTTTCCACCCCTCAC+TGG - chr6.2:71248480-71248499 MS.gene069767:CDS 55.0%
! ACTGACCGTCTGAGACTACG+TGG + chr6.2:71248770-71248789 None:intergenic 55.0%
!! CGGAGAGGAGCTTGTTGTGA+AGG + chr6.2:71249384-71249403 None:intergenic 55.0%
!! GGAAACGGAGGGTTGGTTGA+TGG - chr6.2:71249188-71249207 MS.gene069767:CDS 55.0%
ACAAGACGACCAGTGAGGGG+TGG + chr6.2:71248492-71248511 None:intergenic 60.0%
CCCCCGTTTCGAACAGCTAC+AGG + chr6.2:71249446-71249465 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 71248237 71249604 71248237 ID=MS.gene069767
chr6.2 mRNA 71248237 71249604 71248237 ID=MS.gene069767.t1;Parent=MS.gene069767
chr6.2 exon 71248237 71249604 71248237 ID=MS.gene069767.t1.exon1;Parent=MS.gene069767.t1
chr6.2 CDS 71248237 71249604 71248237 ID=cds.MS.gene069767.t1;Parent=MS.gene069767.t1
Gene Sequence

>MS.gene069767

ATGAATAGTGTCGTGAGATTGATATCCACGAGTTCAATCCACGCAACAAAAAACAATAGTGATAATAATAATGGAAACTCAAATGATTTTCAGAAAATCGATTTGACACCATGGGATCTCCAAATCCTCCCACTTGAATACTACCAAACAGGCCTTCTTTTCACTCACCCTCCTGATATTGAACACCGATCATCAAAAAACAATGTAATCGATCATTTGAAACAAACCCTTTCCTCGACTCTTTCCTACTTTCCACCCCTCACTGGTCGTCTTGTAATCACACAACACGAAGAAGATCACACTGCCTCGTGTTTCATCAATTGCAACAATGTTGGTGCACTCTTTATCCACGCCAAAGCAGAAAACATTACCGTTACCGACATCACTCAACCCACAGATCACATTGTACCGCCCATTGTCAACTCCTTCTTCCACCTCAACGGTGTAAAAAACTGGAACACATCACACCCGATTCTAGCTGTCCAAGTAACGGAGCTACTTGATGGCATCTTCATTGGCTTCACTATCAACCACGTAGTCTCAGACGGTCAGTCTTTTTGGCATTTCGTCAATTCTTGGTCCCAAATCTCACAAGGAGGAGGTTCTTTCAATAAACTCCCTTCACTTAAGCGTTGGTTTCCAAACGACATTCATGAACTTCCTATACGTTTCCCTTTCACAACCGAATTCATTCAAAACCCTAAGTTCATCAACTTAGCTGAAGGAGTATTCAATTTCACAAAGGAGAAAATCGCAGAACTTAAATCCAAAGCAAACACAGAAACCAACAAAACTGAGAAAATAACAATATCATCGCTTCAAGCAGTATTAGCTCACGTTCTGCGTTCTGTAGTTCGTTGCGAAAGACTTGATCCACAAGAAGATGTTCTTTATCTGTTGGTGATAGGGGTTAGACCAAGGATGATTCCGCCGCTTGAAGATGAATATTTCGGAAACGGAGGGTTGGTTGATGGTTTTACAATGAAAGCAGGGGAAATCCTAGAGTGTGGGATTGGAAAGGTTGCTTTGGAAATGAACAAGGTGATTTCTTTACATTCTAATGATGAGAAAATAAAAAAATGGTATGAGTCTTGGTTGAAAACGCCAAAGTTGCTTTTGGGTGGTGACTTATCCCGTTGTTATTCCTTCACAACAAGCTCCTCTCCGAGGTTTGATTGTTATGGCAATGATTTTGGTTGGGGAAAGCCTGTAGCTGTTCGAAACGGGGGTGCCAATAAAAGAAATGGGAAGATTACTGTGTTTTCTGGGGCTGAAGAGGGTAGTATTGACATTATGCCGTGTCTTCCTTATAAGGTTTTGGAGGCCATGGGAAACGACACTGAGTTCATAGGAAAAAAAATTAATTAA
Protein sequence

>MS.gene069767.t1

MNSVVRLISTSSIHATKNNSDNNNGNSNDFQKIDLTPWDLQILPLEYYQTGLLFTHPPDIEHRSSKNNVIDHLKQTLSSTLSYFPPLTGRLVITQHEEDHTASCFINCNNVGALFIHAKAENITVTDITQPTDHIVPPIVNSFFHLNGVKNWNTSHPILAVQVTELLDGIFIGFTINHVVSDGQSFWHFVNSWSQISQGGGSFNKLPSLKRWFPNDIHELPIRFPFTTEFIQNPKFINLAEGVFNFTKEKIAELKSKANTETNKTEKITISSLQAVLAHVLRSVVRCERLDPQEDVLYLLVIGVRPRMIPPLEDEYFGNGGLVDGFTMKAGEILECGIGKVALEMNKVISLHSNDEKIKKWYESWLKTPKLLLGGDLSRCYSFTTSSSPRFDCYGNDFGWGKPVAVRNGGANKRNGKITVFSGAEEGSIDIMPCLPYKVLEAMGNDTEFIGKKIN