AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90496


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90496.t1 MTR_4g094835 71.868 455 117 3 1 453 1 446 0.0 679
MS.gene90496.t1 MTR_4g094838 71.335 457 101 7 4 454 1 433 0.0 630
MS.gene90496.t1 MTR_4g094832 73.475 377 92 3 81 454 60 431 0.0 561
MS.gene90496.t1 MTR_4g094842 60.352 454 165 7 1 449 1 444 0.0 543
MS.gene90496.t1 MTR_0190s0020 58.407 452 171 8 1 449 1 438 0.0 523
MS.gene90496.t1 MTR_8g041770 57.522 452 174 8 1 449 1 437 0.0 518
MS.gene90496.t1 MTR_3g088420 57.871 451 166 10 1 449 1 429 2.42e-178 506
MS.gene90496.t1 MTR_4g094828 56.484 455 175 10 1 445 1 442 1.14e-177 505
MS.gene90496.t1 MTR_4g022720 56.195 452 174 8 1 449 1 431 5.00e-176 500
MS.gene90496.t1 MTR_8g079710 57.174 453 168 10 1 444 1 436 1.02e-174 497
MS.gene90496.t1 MTR_4g022825 55.580 457 174 10 1 449 1 436 7.99e-174 494
MS.gene90496.t1 MTR_4g022800 55.556 459 173 10 1 449 1 438 3.43e-173 493
MS.gene90496.t1 MTR_4g022290 57.143 455 167 12 1 445 1 437 1.03e-172 492
MS.gene90496.t1 MTR_4g022670 54.367 458 179 10 1 449 1 437 3.39e-169 483
MS.gene90496.t1 MTR_3g026310 53.879 464 179 11 1 449 1 444 4.17e-167 478
MS.gene90496.t1 MTR_7g026860 54.048 457 179 10 1 449 1 434 4.75e-164 470
MS.gene90496.t1 MTR_4g022760 49.015 457 161 9 1 449 1 393 8.00e-141 409
MS.gene90496.t1 MTR_6g016815 43.016 451 167 13 1 449 15 377 7.67e-106 319
MS.gene90496.t1 MTR_4g094825 85.143 175 22 2 20 194 80 250 1.42e-94 291
MS.gene90496.t1 MTR_4g094825 84.516 155 14 1 300 454 248 392 6.75e-85 266
MS.gene90496.t1 MTR_3g101900 39.443 431 240 9 28 449 26 444 5.05e-93 288
MS.gene90496.t1 MTR_3g102020 38.147 464 249 11 3 449 5 447 4.22e-92 286
MS.gene90496.t1 MTR_3g101930 38.673 437 234 9 32 449 30 451 1.34e-90 283
MS.gene90496.t1 MTR_3g102010 38.095 462 249 11 4 449 7 447 3.69e-88 276
MS.gene90496.t1 MTR_3g101960 37.093 461 255 10 3 448 5 445 7.23e-87 273
MS.gene90496.t1 MTR_3g101970 37.150 428 236 8 32 449 29 433 2.33e-84 266
MS.gene90496.t1 MTR_5g081960 33.128 486 241 10 30 454 25 487 2.80e-79 254
MS.gene90496.t1 MTR_3g070170 35.637 463 236 10 30 453 31 470 1.38e-78 252
MS.gene90496.t1 MTR_8g040780 58.454 207 81 3 242 445 20 224 1.36e-76 239
MS.gene90496.t1 MTR_8g040760 54.626 227 88 5 1 224 1 215 9.01e-76 236
MS.gene90496.t1 MTR_4g015180 32.649 487 244 11 27 449 17 483 1.63e-69 229
MS.gene90496.t1 MTR_7g026850 54.286 175 70 3 37 209 12 178 6.25e-58 189
MS.gene90496.t1 MTR_3g102030 33.007 306 168 4 106 407 48 320 1.58e-48 169
MS.gene90496.t1 MTR_6g045553 27.917 480 298 11 2 450 10 472 2.10e-47 170
MS.gene90496.t1 MTR_7g026770 49.724 181 64 4 157 335 132 287 2.10e-46 162
MS.gene90496.t1 MTR_6g034485 56.154 130 52 2 202 331 1 125 8.74e-45 152
MS.gene90496.t1 MTR_6g034495 58.594 128 44 2 72 194 37 160 8.88e-44 151
MS.gene90496.t1 MTR_7g026830 68.293 82 26 0 100 181 16 97 2.80e-33 121
MS.gene90496.t1 MTR_4g007540 26.142 394 253 12 64 442 56 426 4.73e-29 118
MS.gene90496.t1 MTR_8g096530 29.752 363 212 13 57 405 52 385 2.38e-28 117
MS.gene90496.t1 MTR_3g098980 27.179 390 244 15 57 435 59 419 3.51e-28 116
MS.gene90496.t1 MTR_3g026950 24.939 409 254 15 61 438 51 437 3.74e-26 110
MS.gene90496.t1 MTR_3g049150 25.740 439 269 14 37 440 21 437 6.19e-26 110
MS.gene90496.t1 MTR_2g105330 23.869 398 259 10 64 438 56 432 1.04e-25 108
MS.gene90496.t1 MTR_2g064495 23.499 383 260 9 64 434 56 417 1.02e-24 106
MS.gene90496.t1 MTR_8g075610 24.685 397 251 15 64 442 47 413 1.90e-24 105
MS.gene90496.t1 MTR_4g097090 25.000 440 258 16 40 434 28 440 2.33e-24 105
MS.gene90496.t1 MTR_4g127650 22.697 445 287 14 22 434 21 440 1.21e-22 100
MS.gene90496.t1 MTR_7g027175 25.954 393 258 12 57 440 61 429 2.38e-21 96.3
MS.gene90496.t1 MTR_3g071320 25.893 336 205 12 49 362 42 355 4.54e-21 95.5
MS.gene90496.t1 MTR_1g081660 23.649 444 294 16 32 453 31 451 6.48e-21 95.1
MS.gene90496.t1 MTR_6g015850 24.520 469 301 15 2 442 6 449 8.26e-21 95.1
MS.gene90496.t1 MTR_7g026780 46.296 108 32 3 342 449 26 107 9.35e-21 87.8
MS.gene90496.t1 MTR_5g026320 25.481 416 244 16 61 448 71 448 1.28e-19 91.3
MS.gene90496.t1 MTR_7g026800 37.654 162 69 6 231 390 29 160 3.15e-19 85.9
MS.gene90496.t1 MTR_6g015815 24.153 443 284 16 30 442 32 452 5.77e-19 89.4
MS.gene90496.t1 MTR_3g087640 25.983 458 282 19 30 447 29 469 7.32e-19 89.4
MS.gene90496.t1 MTR_5g084870 25.879 398 230 17 33 403 17 376 1.01e-18 88.6
MS.gene90496.t1 MTR_2g089765 24.583 480 290 20 3 437 15 467 1.21e-18 88.6
MS.gene90496.t1 MTR_3g086020 26.634 413 228 20 62 454 59 416 1.52e-18 87.8
MS.gene90496.t1 MTR_4g022780 36.364 165 73 6 231 393 30 164 1.54e-18 83.6
MS.gene90496.t1 MTR_6g015315 25.938 320 200 8 155 442 141 455 1.56e-18 88.2
MS.gene90496.t1 MTR_2g089755 26.585 410 247 20 32 403 37 430 1.66e-18 88.2
MS.gene90496.t1 MTR_7g084940 25.691 362 226 12 55 402 60 392 4.50e-18 86.7
MS.gene90496.t1 MTR_3g049140 27.511 229 140 6 230 440 14 234 5.40e-18 84.0
MS.gene90496.t1 MTR_7g014330 24.631 406 253 15 30 402 24 409 9.48e-18 85.9
MS.gene90496.t1 MTR_1g040195 23.702 443 257 18 33 447 23 412 1.38e-17 85.1
MS.gene90496.t1 MTR_6g015320 26.266 316 188 12 155 440 144 444 2.73e-17 84.3
MS.gene90496.t1 MTR_8g012750 25.412 425 239 18 30 402 24 422 4.56e-17 83.6
MS.gene90496.t1 MTR_8g079980 24.000 400 240 11 33 403 17 381 1.99e-16 81.6
MS.gene90496.t1 MTR_7g015860 22.727 462 283 15 30 447 26 457 2.02e-16 81.6
MS.gene90496.t1 MTR_5g076700 22.247 445 287 16 33 447 24 439 2.55e-16 81.3
MS.gene90496.t1 MTR_7g085930 23.786 412 249 14 64 429 59 451 2.98e-16 81.3
MS.gene90496.t1 MTR_2g089670 24.939 413 246 18 29 402 42 429 5.58e-16 80.5
MS.gene90496.t1 MTR_7g014250 24.939 413 243 17 30 402 24 409 7.14e-16 80.1
MS.gene90496.t1 MTR_7g114470 23.973 438 269 18 33 437 25 431 1.04e-15 79.3
MS.gene90496.t1 MTR_7g086000 25.061 407 264 13 62 442 58 449 1.15e-15 79.3
MS.gene90496.t1 MTR_2g089650 24.205 409 272 17 23 403 20 418 3.60e-15 77.8
MS.gene90496.t1 MTR_4g013050 21.411 411 248 12 57 444 46 404 5.02e-15 77.0
MS.gene90496.t1 MTR_3g450710 25.707 389 217 16 58 407 59 414 5.09e-15 77.4
MS.gene90496.t1 MTR_7g014230 23.821 403 260 13 30 402 26 411 7.87e-15 76.6
MS.gene90496.t1 MTR_7g014160 23.044 473 288 17 17 434 4 455 8.18e-15 76.6
MS.gene90496.t1 MTR_4g055170 24.671 304 206 7 64 361 69 355 8.80e-15 76.6
MS.gene90496.t1 MTR_7g014200 25.115 434 237 18 23 402 21 420 9.41e-15 76.6
MS.gene90496.t1 MTR_7g014610 24.190 463 275 19 23 434 20 457 1.74e-14 75.9
MS.gene90496.t1 MTR_7g114520 23.858 394 248 19 37 410 41 402 4.69e-14 74.3
MS.gene90496.t1 MTR_7g114490 23.733 434 259 19 37 440 40 431 6.08e-14 74.3
MS.gene90496.t1 MTR_1g053315 21.503 386 270 14 64 434 78 445 6.08e-14 73.9
MS.gene90496.t1 MTR_5g090810 24.866 374 226 14 61 403 63 412 9.24e-14 73.6
MS.gene90496.t1 MTR_2g089735 24.719 445 286 19 36 447 30 458 2.22e-13 72.4
MS.gene90496.t1 MTR_3g112180 22.857 350 242 11 61 401 58 388 2.85e-13 72.0
MS.gene90496.t1 MTR_7g056087 22.983 409 267 15 40 419 30 419 3.02e-13 71.6
MS.gene90496.t1 MTR_8g467580 26.389 432 247 20 49 449 41 432 3.63e-13 71.6
MS.gene90496.t1 MTR_3g028210 23.974 463 298 20 4 434 8 448 3.68e-13 71.6
MS.gene90496.t1 MTR_7g085990 23.022 417 246 15 64 429 55 447 3.79e-13 71.6
MS.gene90496.t1 MTR_5g090880 24.011 379 232 15 57 403 60 414 6.77e-13 70.9
MS.gene90496.t1 MTR_6g053810 21.698 318 208 10 64 365 71 363 8.66e-13 70.5
MS.gene90496.t1 MTR_1g040315 24.092 303 194 10 33 320 23 304 1.93e-12 69.3
MS.gene90496.t1 MTR_1g094790 24.832 447 258 23 40 449 32 437 6.52e-12 67.8
MS.gene90496.t1 MTR_7g026880 57.778 45 19 0 405 449 5 49 1.01e-11 60.1
MS.gene90496.t1 MTR_7g013850 22.169 415 255 13 37 402 37 432 1.15e-11 67.0
MS.gene90496.t1 MTR_7g084910 24.104 307 182 9 40 319 36 318 1.42e-11 66.6
MS.gene90496.t1 MTR_8g467590 24.272 412 249 14 63 449 59 432 2.18e-11 65.9
MS.gene90496.t1 MTR_7g026870 44.286 70 33 2 298 361 82 151 6.22e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90496.t1 AT5G67150 41.447 456 243 7 2 449 3 442 1.00e-117 352
MS.gene90496.t1 AT3G50300 40.175 458 250 8 1 449 1 443 2.89e-104 318
MS.gene90496.t1 AT3G50270 39.866 449 254 8 6 449 7 444 1.18e-99 306
MS.gene90496.t1 AT3G50280 36.865 453 268 6 1 449 1 439 2.63e-99 305
MS.gene90496.t1 AT5G38130 39.310 435 247 6 5 434 20 442 6.47e-99 304
MS.gene90496.t1 AT5G67160 39.627 429 231 8 25 448 22 427 5.15e-98 301
MS.gene90496.t1 AT5G42830 35.484 434 254 9 28 449 26 445 2.64e-83 264
MS.gene90496.t1 AT2G39980 32.911 474 240 9 30 449 27 476 1.52e-79 255
MS.gene90496.t1 AT5G07850 36.721 433 245 10 32 449 31 449 3.21e-79 253
MS.gene90496.t1 AT5G07860 36.782 435 238 11 32 449 31 445 1.81e-78 251
MS.gene90496.t1 AT5G01210 33.769 459 247 10 30 449 25 465 1.03e-73 239
MS.gene90496.t1 AT5G07870 35.440 443 245 9 32 449 31 457 4.35e-73 238
MS.gene90496.t1 AT3G50280 38.782 312 185 3 141 449 1 309 8.35e-72 229
MS.gene90496.t1 AT5G23940 30.892 437 280 8 28 450 21 449 1.22e-59 203
MS.gene90496.t1 AT3G50290 40.672 268 152 3 138 400 4 269 1.25e-58 194
MS.gene90496.t1 AT2G19070 25.624 441 279 12 35 442 19 443 1.68e-27 114
MS.gene90496.t1 AT3G48720 26.761 355 229 12 57 403 54 385 1.05e-26 112
MS.gene90496.t1 AT3G29590 25.508 443 288 13 24 444 20 442 4.27e-26 110
MS.gene90496.t1 AT5G41040 26.343 391 249 11 57 434 62 426 1.50e-25 108
MS.gene90496.t1 AT5G41040 26.343 391 249 11 57 434 78 442 1.78e-25 108
MS.gene90496.t1 AT5G48930 24.694 409 262 11 49 437 39 421 2.28e-25 108
MS.gene90496.t1 AT1G78990 27.957 372 222 13 51 403 52 396 1.90e-22 99.8
MS.gene90496.t1 AT3G29635 23.341 437 278 14 30 434 27 438 1.04e-21 97.8
MS.gene90496.t1 AT5G57840 27.952 415 239 18 49 434 39 422 1.56e-21 97.1
MS.gene90496.t1 AT5G63560 24.552 391 250 14 57 434 54 412 8.84e-21 94.7
MS.gene90496.t1 AT5G39080 23.529 459 294 16 20 442 16 453 2.76e-20 93.6
MS.gene90496.t1 AT1G31490 26.277 411 255 15 61 454 59 438 7.31e-20 92.0
MS.gene90496.t1 AT1G24430 23.969 388 236 16 55 426 53 397 2.35e-19 90.5
MS.gene90496.t1 AT5G23970 25.000 436 277 17 28 450 20 418 1.93e-18 87.8
MS.gene90496.t1 AT5G39090 25.571 438 285 19 20 437 16 432 9.47e-18 85.9
MS.gene90496.t1 AT3G29670 24.123 456 298 18 3 434 2 433 1.35e-17 85.1
MS.gene90496.t1 AT5G47950 23.312 459 298 16 1 449 1 415 1.47e-17 85.1
MS.gene90496.t1 AT5G39050 24.920 313 200 12 151 435 145 450 1.81e-17 85.1
MS.gene90496.t1 AT1G24420 25.445 393 242 16 74 453 75 429 2.30e-17 84.3
MS.gene90496.t1 AT1G24420 25.445 393 242 16 74 453 75 429 2.30e-17 84.3
MS.gene90496.t1 AT3G30280 25.349 430 250 21 1 403 1 386 2.58e-17 84.3
MS.gene90496.t1 AT2G40230 24.221 417 272 14 1 403 1 387 2.84e-17 84.3
MS.gene90496.t1 AT1G28680 26.667 255 169 6 157 403 143 387 3.19e-17 84.0
MS.gene90496.t1 AT3G26040 24.755 408 252 16 60 449 55 425 4.90e-17 83.6
MS.gene90496.t1 AT1G28680 27.143 210 140 4 157 359 143 346 7.77e-16 79.3
MS.gene90496.t1 AT5G61160 26.688 311 196 14 151 440 139 438 3.28e-15 77.8
MS.gene90496.t1 AT4G15390 23.944 355 220 15 4 347 8 323 1.60e-14 75.9
MS.gene90496.t1 AT4G15390 23.944 355 220 15 4 347 8 323 1.60e-14 75.9
MS.gene90496.t1 AT5G07080 25.402 311 190 12 42 333 44 331 4.52e-14 74.3
MS.gene90496.t1 AT5G16410 25.915 328 204 13 95 403 112 419 5.57e-14 74.3
MS.gene90496.t1 AT3G47170 23.607 305 198 10 57 341 63 352 6.46e-13 70.9
MS.gene90496.t1 AT5G47980 25.362 414 241 20 63 449 60 432 4.15e-12 68.2
MS.gene90496.t1 AT1G65450 22.314 363 242 13 55 402 63 400 9.95e-12 67.0
MS.gene90496.t1 AT2G25150 24.904 261 182 8 155 406 148 403 1.28e-11 67.0

Find 93 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATTCTTTCAGCTAAAT+TGG 0.161367 8.3:-23625669 None:intergenic
GTGTCTTTCTTATGAGATTT+TGG 0.228049 8.3:+23626252 MS.gene90496:CDS
CGTTGAAATGAAGGGAGTTT+TGG 0.257934 8.3:-23625554 None:intergenic
TCATTCTTCCCACCCTTTGC+AGG 0.261438 8.3:+23625173 MS.gene90496:CDS
TGTGGGAACCTTTCGAGATT+TGG 0.269190 8.3:-23625526 None:intergenic
GGGAAATGATGTTGAGTTCT+TGG 0.297726 8.3:+23626282 MS.gene90496:CDS
TTTGGCATTTCGTTAATTCT+TGG 0.304274 8.3:+23625501 MS.gene90496:CDS
GTGGGAACCTTTCGAGATTT+GGG 0.309319 8.3:-23625525 None:intergenic
TACAATCTGATGAGAAAATA+AGG 0.315586 8.3:+23626008 MS.gene90496:CDS
GGAAACGCAGTAGTGGTTAA+TGG 0.325663 8.3:+23625908 MS.gene90496:CDS
GGTGGAAAAGAAGGCCTCTT+TGG 0.329077 8.3:-23625091 None:intergenic
TGAGATGGTTGATTTGGTTT+TGG 0.333677 8.3:-23625127 None:intergenic
AAGCACTATTATCTCATGTT+TGG 0.349361 8.3:+23625777 MS.gene90496:CDS
TAAGGAACCATTACGAATCT+TGG 0.357996 8.3:+23626026 MS.gene90496:CDS
TTTGTTTGAGATGGTTGATT+TGG 0.369144 8.3:-23625133 None:intergenic
ACCAAGGATGATTCCACCTT+TGG 0.373650 8.3:+23625871 MS.gene90496:CDS
ATTGGAATTTCAATATCGTT+TGG 0.377241 8.3:-23625584 None:intergenic
TTGGAATTTCAATATCGTTT+GGG 0.377876 8.3:-23625583 None:intergenic
TTGTAGACGCCAAGTCGTTT+TGG 0.392431 8.3:+23625483 MS.gene90496:CDS
AGCTTTCTTCTGAGGAGTCT+TGG 0.397249 8.3:-23625640 None:intergenic
TGTTGTGGATATCACCTTGA+TGG 0.409513 8.3:-23624964 None:intergenic
AAAACCAACTCTAGCAATTC+AGG 0.414621 8.3:+23625409 MS.gene90496:CDS
TTAAGTGACGGCATCTTCAT+TGG 0.417429 8.3:+23625440 MS.gene90496:CDS
CCTTTGGAAGAAGATTATTT+CGG 0.422258 8.3:+23625887 MS.gene90496:CDS
TGTGTGAAAGGGAAGCGTAT+TGG 0.429614 8.3:-23625602 None:intergenic
CAGTCACATTACTTAGAACT+AGG 0.433385 8.3:-23626307 None:intergenic
GTTTGTGGTGTCGTTGTGTT+GGG 0.434146 8.3:-23625210 None:intergenic
CATTCTTCCCACCCTTTGCA+GGG 0.439523 8.3:+23625174 MS.gene90496:CDS
TCCAAAGGTGGAATCATCCT+TGG 0.454320 8.3:-23625872 None:intergenic
TGTTTGTGGTGTCGTTGTGT+TGG 0.462700 8.3:-23625211 None:intergenic
TTTGGTTAGGAATGGGTTGG+TGG 0.465905 8.3:-23625109 None:intergenic
CCGAAATAATCTTCTTCCAA+AGG 0.467292 8.3:-23625887 None:intergenic
AGATTATTATTGTTGTCAAT+TGG 0.472545 8.3:-23624999 None:intergenic
GGGAACCAACGTTGAAATGA+AGG 0.474068 8.3:-23625563 None:intergenic
GACAATTGGAGGTGTGTAGT+TGG 0.479530 8.3:-23625339 None:intergenic
TGGAAAGTGTTTGTTTGAGA+TGG 0.485281 8.3:-23625142 None:intergenic
TTCTCAACCAAGATTCGTAA+TGG 0.489014 8.3:-23626033 None:intergenic
GAGGTTCTAGAGTGTGAAAT+CGG 0.491146 8.3:+23625950 MS.gene90496:CDS
AACGAAATGCCAAAACGACT+TGG 0.492743 8.3:-23625492 None:intergenic
GAATGGGTTGGTGGAAAAGA+AGG 0.503869 8.3:-23625100 None:intergenic
TGTGATTGTATTTGTGTGAA+AGG 0.505410 8.3:-23625614 None:intergenic
CTTCTTCATGGATTCCATCA+AGG 0.511613 8.3:+23624950 None:intergenic
AATGGTGTGAGGATGAAAGC+AGG 0.512088 8.3:+23625926 MS.gene90496:CDS
GTTACCTGAATTGCTAGAGT+TGG 0.515092 8.3:-23625413 None:intergenic
TGGTTTCAAGTGGAAGGAAT+CGG 0.519621 8.3:-23625067 None:intergenic
GAGGTGTGTAGTTGGATTGA+AGG 0.522441 8.3:-23625331 None:intergenic
TTTGGATGGTTTCAAGTGGA+AGG 0.524015 8.3:-23625073 None:intergenic
GAAAAGAAGGCCTCTTTGGA+TGG 0.529505 8.3:-23625087 None:intergenic
GTGATTGTATTTGTGTGAAA+GGG 0.534325 8.3:-23625613 None:intergenic
CTCCCACTTCGAAACGCCAC+AGG 0.534418 8.3:-23626160 None:intergenic
GGATTCTAAGCTTTCTTCTG+AGG 0.535259 8.3:-23625648 None:intergenic
TTCCGAAGTGGTAGTTCGCT+AGG 0.540203 8.3:+23626067 MS.gene90496:CDS
ACCGAGGTTGTTGCAAATGA+TGG 0.541381 8.3:-23625261 None:intergenic
GATTACAAGACGCCCTGCAA+AGG 0.543778 8.3:-23625186 None:intergenic
AGCCTGTGGCGTTTCGAAGT+GGG 0.545492 8.3:+23626158 MS.gene90496:CDS
AACTCCCTTCATTTCAACGT+TGG 0.545872 8.3:+23625558 MS.gene90496:CDS
GTGGCGTTTCGAAGTGGGAG+TGG 0.549176 8.3:+23626163 MS.gene90496:CDS
ATGGTGTGAGGATGAAAGCA+GGG 0.551554 8.3:+23625927 MS.gene90496:CDS
GTGTTTGCTGGTGCTGAAGA+AGG 0.553326 8.3:+23626211 MS.gene90496:CDS
ATTACAAGACGCCCTGCAAA+GGG 0.555357 8.3:-23625185 None:intergenic
TTCGCTAGGTGGTAATATGT+TGG 0.564328 8.3:+23626081 MS.gene90496:CDS
AAATAATCTTCTTCCAAAGG+TGG 0.566011 8.3:-23625884 None:intergenic
TGGTGCTTGAATTGTTGTTG+TGG 0.571268 8.3:-23624979 None:intergenic
GGAACCAACGTTGAAATGAA+GGG 0.576282 8.3:-23625562 None:intergenic
TCTTGGTCCCAAATCTCGAA+AGG 0.578370 8.3:+23625518 MS.gene90496:CDS
AACTCTAGCAATTCAGGTAA+CGG 0.581378 8.3:+23625415 MS.gene90496:CDS
GAAAATTGATCTAACACCAT+GGG 0.583475 8.3:+23625040 MS.gene90496:CDS
CACCTAGCGAACTACCACTT+CGG 0.583535 8.3:-23626069 None:intergenic
CCTCTTTGGATGGTTTCAAG+TGG 0.585328 8.3:-23625077 None:intergenic
TCCATCATTTGCAACAACCT+CGG 0.586818 8.3:+23625260 MS.gene90496:CDS
ACATAGAAAACATCTTCTTG+TGG 0.596961 8.3:-23625830 None:intergenic
GGGTGGGAAGAATGAGAGTG+TGG 0.597075 8.3:-23625165 None:intergenic
GGAAGGAATCGGAGATCCCA+TGG 0.597088 8.3:-23625056 None:intergenic
AAGCCTGTGGCGTTTCGAAG+TGG 0.599152 8.3:+23626157 MS.gene90496:CDS
ACAAGACGCCCTGCAAAGGG+TGG 0.600540 8.3:-23625182 None:intergenic
ACACCAACGTTGTTCCGAAG+TGG 0.610004 8.3:+23626055 MS.gene90496:CDS
TGGGAAGAATGAGAGTGTGG+TGG 0.610635 8.3:-23625162 None:intergenic
TTATTTCGGAAACGCAGTAG+TGG 0.625782 8.3:+23625901 MS.gene90496:CDS
AGAAAATTGATCTAACACCA+TGG 0.626932 8.3:+23625039 MS.gene90496:CDS
CCACTTGAAACCATCCAAAG+AGG 0.628828 8.3:+23625077 MS.gene90496:CDS
CTACCACTTCGGAACAACGT+TGG 0.629293 8.3:-23626058 None:intergenic
CAAGACGCCCTGCAAAGGGT+GGG 0.638377 8.3:-23625181 None:intergenic
AAGAATCTTCCATTTCACAA+AGG 0.647468 8.3:+23625682 MS.gene90496:CDS
TGGTGTGAGGATGAAAGCAG+GGG 0.647651 8.3:+23625928 MS.gene90496:CDS
CGAAGTGGTAGTTCGCTAGG+TGG 0.653912 8.3:+23626070 MS.gene90496:CDS
CAGGTAACGGAGTTAAGTGA+CGG 0.655221 8.3:+23625428 MS.gene90496:CDS
AGCACAAAACACAACTGTCG+CGG 0.659280 8.3:+23625304 MS.gene90496:CDS
TGTGAGGATGAAAGCAGGGG+AGG 0.662636 8.3:+23625931 MS.gene90496:CDS
CAGTAGTGGTTAATGGTGTG+AGG 0.690545 8.3:+23625915 MS.gene90496:CDS
TTTCACAAAGGAGAAAATCG+CGG 0.713213 8.3:+23625694 MS.gene90496:CDS
ACTTGGCGTCTACAACAGCG+TGG 0.778771 8.3:-23625475 None:intergenic
TGATGATAGATGTTAGACCA+AGG 0.780037 8.3:+23625855 MS.gene90496:CDS
CGTGGACGAAGAGTGCACCG+AGG 0.794757 8.3:-23625277 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAGTTTTATCTGTTT+CGG - chr8.3:23625747-23625766 None:intergenic 15.0%
!! AGATTATTATTGTTGTCAAT+TGG - chr8.3:23625002-23625021 None:intergenic 20.0%
! ATTGGAATTTCAATATCGTT+TGG - chr8.3:23625587-23625606 None:intergenic 25.0%
! TACAATCTGATGAGAAAATA+AGG + chr8.3:23626008-23626027 MS.gene90496:CDS 25.0%
! TTGGAATTTCAATATCGTTT+GGG - chr8.3:23625586-23625605 None:intergenic 25.0%
!!! CACTCATTTTTTACACTTAA+CGG + chr8.3:23625362-23625381 MS.gene90496:CDS 25.0%
AAATAATCTTCTTCCAAAGG+TGG - chr8.3:23625887-23625906 None:intergenic 30.0%
AAGAATCTTCCATTTCACAA+AGG + chr8.3:23625682-23625701 MS.gene90496:CDS 30.0%
AAGCACTATTATCTCATGTT+TGG + chr8.3:23625777-23625796 MS.gene90496:CDS 30.0%
ACATAGAAAACATCTTCTTG+TGG - chr8.3:23625833-23625852 None:intergenic 30.0%
AGAAAATTGATCTAACACCA+TGG + chr8.3:23625039-23625058 MS.gene90496:CDS 30.0%
CGTTAAGTGTAAAAAATGAG+TGG - chr8.3:23625364-23625383 None:intergenic 30.0%
GAAAATTGATCTAACACCAT+GGG + chr8.3:23625040-23625059 MS.gene90496:CDS 30.0%
GAAGATTCTTTCAGCTAAAT+TGG - chr8.3:23625672-23625691 None:intergenic 30.0%
GGGAGTGGTAATAAAAATAA+TGG + chr8.3:23626178-23626197 MS.gene90496:CDS 30.0%
GTAAAAAATGAGTGGACAAT+TGG - chr8.3:23625356-23625375 None:intergenic 30.0%
GTGATTGTATTTGTGTGAAA+GGG - chr8.3:23625616-23625635 None:intergenic 30.0%
TGTGATTGTATTTGTGTGAA+AGG - chr8.3:23625617-23625636 None:intergenic 30.0%
TTGCCAAAAACATCAAATCT+CGG - chr8.3:23626121-23626140 None:intergenic 30.0%
TTTGGCATTTCGTTAATTCT+TGG + chr8.3:23625501-23625520 MS.gene90496:CDS 30.0%
! CCTTTGGAAGAAGATTATTT+CGG + chr8.3:23625887-23625906 MS.gene90496:CDS 30.0%
! GTGTCTTTCTTATGAGATTT+TGG + chr8.3:23626252-23626271 MS.gene90496:CDS 30.0%
! TCTTTCTTATGAGATTTTGG+AGG + chr8.3:23626255-23626274 MS.gene90496:CDS 30.0%
! TTTGTTTGAGATGGTTGATT+TGG - chr8.3:23625136-23625155 None:intergenic 30.0%
!! TTTTTGGCAATGATTTTGGT+TGG + chr8.3:23626131-23626150 MS.gene90496:CDS 30.0%
!!! ATTTGGTTTTGGTTAGGAAT+GGG - chr8.3:23625119-23625138 None:intergenic 30.0%
!!! GATGTTTTTGGCAATGATTT+TGG + chr8.3:23626127-23626146 MS.gene90496:CDS 30.0%
!!! TTTTGGCAATGATTTTGGTT+GGG + chr8.3:23626132-23626151 MS.gene90496:CDS 30.0%
AAAAATGAGTGGACAATTGG+AGG - chr8.3:23625353-23625372 None:intergenic 35.0%
AAAACCAACTCTAGCAATTC+AGG + chr8.3:23625409-23625428 MS.gene90496:CDS 35.0%
AACTCTAGCAATTCAGGTAA+CGG + chr8.3:23625415-23625434 MS.gene90496:CDS 35.0%
CCGAAATAATCTTCTTCCAA+AGG - chr8.3:23625890-23625909 None:intergenic 35.0%
GGAAAAATTAGTGTGTTTGC+TGG + chr8.3:23626199-23626218 MS.gene90496:CDS 35.0%
TAAGGAACCATTACGAATCT+TGG + chr8.3:23626026-23626045 MS.gene90496:CDS 35.0%
TGATGATAGATGTTAGACCA+AGG + chr8.3:23625855-23625874 MS.gene90496:CDS 35.0%
TTCTCAACCAAGATTCGTAA+TGG - chr8.3:23626036-23626055 None:intergenic 35.0%
TTTCACAAAGGAGAAAATCG+CGG + chr8.3:23625694-23625713 MS.gene90496:CDS 35.0%
! CGATTTTCTCCTTTGTGAAA+TGG - chr8.3:23625694-23625713 None:intergenic 35.0%
! TCTCCGAGATTTGATGTTTT+TGG + chr8.3:23626115-23626134 MS.gene90496:CDS 35.0%
!! AAGGGAGTTTTGGTATTTTG+TGG - chr8.3:23625547-23625566 None:intergenic 35.0%
!! AGGGAGTTTTGGTATTTTGT+GGG - chr8.3:23625546-23625565 None:intergenic 35.0%
!! GTTGTTGTTGTTGTTGTTTG+TGG - chr8.3:23625228-23625247 None:intergenic 35.0%
!! TATGAGATTTTGGAGGCTTT+GGG + chr8.3:23626262-23626281 MS.gene90496:CDS 35.0%
!! TGGAAAGTGTTTGTTTGAGA+TGG - chr8.3:23625145-23625164 None:intergenic 35.0%
!! TTATGAGATTTTGGAGGCTT+TGG + chr8.3:23626261-23626280 MS.gene90496:CDS 35.0%
!!! GATTTGGTTTTGGTTAGGAA+TGG - chr8.3:23625120-23625139 None:intergenic 35.0%
!!! TGAGATGGTTGATTTGGTTT+TGG - chr8.3:23625130-23625149 None:intergenic 35.0%
!!! TGGTTGATTTGGTTTTGGTT+AGG - chr8.3:23625125-23625144 None:intergenic 35.0%
!!! TTTGGCAATGATTTTGGTTG+GGG + chr8.3:23626133-23626152 MS.gene90496:CDS 35.0%
AACGAAATGCCAAAACGACT+TGG - chr8.3:23625495-23625514 None:intergenic 40.0%
AACTCCCTTCATTTCAACGT+TGG + chr8.3:23625558-23625577 MS.gene90496:CDS 40.0%
GGAACCAACGTTGAAATGAA+GGG - chr8.3:23625565-23625584 None:intergenic 40.0%
GGATTCTAAGCTTTCTTCTG+AGG - chr8.3:23625651-23625670 None:intergenic 40.0%
GGGAAATGATGTTGAGTTCT+TGG + chr8.3:23626282-23626301 MS.gene90496:CDS 40.0%
GTTACCTGAATTGCTAGAGT+TGG - chr8.3:23625416-23625435 None:intergenic 40.0%
TCCATCATTTGCAACAACCT+CGG + chr8.3:23625260-23625279 MS.gene90496:CDS 40.0%
TGTTGTGGATATCACCTTGA+TGG - chr8.3:23624967-23624986 None:intergenic 40.0%
TTAAGTGACGGCATCTTCAT+TGG + chr8.3:23625440-23625459 MS.gene90496:CDS 40.0%
TTATTTCGGAAACGCAGTAG+TGG + chr8.3:23625901-23625920 MS.gene90496:CDS 40.0%
TTCGCTAGGTGGTAATATGT+TGG + chr8.3:23626081-23626100 MS.gene90496:CDS 40.0%
! CGTTGAAATGAAGGGAGTTT+TGG - chr8.3:23625557-23625576 None:intergenic 40.0%
! TGGTGCTTGAATTGTTGTTG+TGG - chr8.3:23624982-23625001 None:intergenic 40.0%
! TGGTTTCAAGTGGAAGGAAT+CGG - chr8.3:23625070-23625089 None:intergenic 40.0%
! TTTGGATGGTTTCAAGTGGA+AGG - chr8.3:23625076-23625095 None:intergenic 40.0%
!! GAGGTTCTAGAGTGTGAAAT+CGG + chr8.3:23625950-23625969 MS.gene90496:CDS 40.0%
AATGGTGTGAGGATGAAAGC+AGG + chr8.3:23625926-23625945 MS.gene90496:CDS 45.0%
ACCAAGGATGATTCCACCTT+TGG + chr8.3:23625871-23625890 MS.gene90496:CDS 45.0%
ACCGAGGTTGTTGCAAATGA+TGG - chr8.3:23625264-23625283 None:intergenic 45.0%
AGCACAAAACACAACTGTCG+CGG + chr8.3:23625304-23625323 MS.gene90496:CDS 45.0%
ATGGTGTGAGGATGAAAGCA+GGG + chr8.3:23625927-23625946 MS.gene90496:CDS 45.0%
ATTACAAGACGCCCTGCAAA+GGG - chr8.3:23625188-23625207 None:intergenic 45.0%
CAGTAGTGGTTAATGGTGTG+AGG + chr8.3:23625915-23625934 MS.gene90496:CDS 45.0%
CCACTTGAAACCATCCAAAG+AGG + chr8.3:23625077-23625096 MS.gene90496:CDS 45.0%
CCTCTTTGGATGGTTTCAAG+TGG - chr8.3:23625080-23625099 None:intergenic 45.0%
GAAAAGAAGGCCTCTTTGGA+TGG - chr8.3:23625090-23625109 None:intergenic 45.0%
GAGGTGTGTAGTTGGATTGA+AGG - chr8.3:23625334-23625353 None:intergenic 45.0%
GGAAACGCAGTAGTGGTTAA+TGG + chr8.3:23625908-23625927 MS.gene90496:CDS 45.0%
GGGAACCAACGTTGAAATGA+AGG - chr8.3:23625566-23625585 None:intergenic 45.0%
GTGGGAACCTTTCGAGATTT+GGG - chr8.3:23625528-23625547 None:intergenic 45.0%
TCCAAAGGTGGAATCATCCT+TGG - chr8.3:23625875-23625894 None:intergenic 45.0%
TCTTGGTCCCAAATCTCGAA+AGG + chr8.3:23625518-23625537 MS.gene90496:CDS 45.0%
TGTGGGAACCTTTCGAGATT+TGG - chr8.3:23625529-23625548 None:intergenic 45.0%
! AGCTTTCTTCTGAGGAGTCT+TGG - chr8.3:23625643-23625662 None:intergenic 45.0%
! GACAATTGGAGGTGTGTAGT+TGG - chr8.3:23625342-23625361 None:intergenic 45.0%
! GACAGTTGTGTTTTGTGCTG+TGG - chr8.3:23625303-23625322 None:intergenic 45.0%
! TGTGTGAAAGGGAAGCGTAT+TGG - chr8.3:23625605-23625624 None:intergenic 45.0%
! TTGTAGACGCCAAGTCGTTT+TGG + chr8.3:23625483-23625502 MS.gene90496:CDS 45.0%
!! CAGGTAACGGAGTTAAGTGA+CGG + chr8.3:23625428-23625447 MS.gene90496:CDS 45.0%
!! GAATGGGTTGGTGGAAAAGA+AGG - chr8.3:23625103-23625122 None:intergenic 45.0%
!! GTTTGTGGTGTCGTTGTGTT+GGG - chr8.3:23625213-23625232 None:intergenic 45.0%
!! TGTTTGTGGTGTCGTTGTGT+TGG - chr8.3:23625214-23625233 None:intergenic 45.0%
!! TTTGGTTAGGAATGGGTTGG+TGG - chr8.3:23625112-23625131 None:intergenic 45.0%
!!! GGTTTTGGTTAGGAATGGGT+TGG - chr8.3:23625115-23625134 None:intergenic 45.0%
ACACCAACGTTGTTCCGAAG+TGG + chr8.3:23626055-23626074 MS.gene90496:CDS 50.0%
CACCTAGCGAACTACCACTT+CGG - chr8.3:23626072-23626091 None:intergenic 50.0%
CATTCTTCCCACCCTTTGCA+GGG + chr8.3:23625174-23625193 MS.gene90496:CDS 50.0%
CTACCACTTCGGAACAACGT+TGG - chr8.3:23626061-23626080 None:intergenic 50.0%
GATTACAAGACGCCCTGCAA+AGG - chr8.3:23625189-23625208 None:intergenic 50.0%
GGTGGAAAAGAAGGCCTCTT+TGG - chr8.3:23625094-23625113 None:intergenic 50.0%
TCATTCTTCCCACCCTTTGC+AGG + chr8.3:23625173-23625192 MS.gene90496:CDS 50.0%
TGGTGTGAGGATGAAAGCAG+GGG + chr8.3:23625928-23625947 MS.gene90496:CDS 50.0%
TTCCGAAGTGGTAGTTCGCT+AGG + chr8.3:23626067-23626086 MS.gene90496:CDS 50.0%
! GTGTTTGCTGGTGCTGAAGA+AGG + chr8.3:23626211-23626230 MS.gene90496:CDS 50.0%
! TGGGAAGAATGAGAGTGTGG+TGG - chr8.3:23625165-23625184 None:intergenic 50.0%
! TTGTGTTTTGTGCTGTGGCG+TGG - chr8.3:23625298-23625317 None:intergenic 50.0%
!! TTTTGGTTGGGGAAAGCCTG+TGG + chr8.3:23626144-23626163 MS.gene90496:CDS 50.0%
AAGCCTGTGGCGTTTCGAAG+TGG + chr8.3:23626157-23626176 MS.gene90496:CDS 55.0%
ACTTGGCGTCTACAACAGCG+TGG - chr8.3:23625478-23625497 None:intergenic 55.0%
AGCCTGTGGCGTTTCGAAGT+GGG + chr8.3:23626158-23626177 MS.gene90496:CDS 55.0%
CGAAGTGGTAGTTCGCTAGG+TGG + chr8.3:23626070-23626089 MS.gene90496:CDS 55.0%
GGAAGGAATCGGAGATCCCA+TGG - chr8.3:23625059-23625078 None:intergenic 55.0%
GGGTGGGAAGAATGAGAGTG+TGG - chr8.3:23625168-23625187 None:intergenic 55.0%
TGTGAGGATGAAAGCAGGGG+AGG + chr8.3:23625931-23625950 MS.gene90496:CDS 55.0%
ACAAGACGCCCTGCAAAGGG+TGG - chr8.3:23625185-23625204 None:intergenic 60.0%
CAAGACGCCCTGCAAAGGGT+GGG - chr8.3:23625184-23625203 None:intergenic 60.0%
CTCCCACTTCGAAACGCCAC+AGG - chr8.3:23626163-23626182 None:intergenic 60.0%
GTGGCGTTTCGAAGTGGGAG+TGG + chr8.3:23626163-23626182 MS.gene90496:CDS 60.0%
! CGTGGACGAAGAGTGCACCG+AGG - chr8.3:23625280-23625299 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 23624957 23626321 23624957 ID=MS.gene90496
chr8.3 mRNA 23624957 23626321 23624957 ID=MS.gene90496.t1;Parent=MS.gene90496
chr8.3 exon 23624957 23626321 23624957 ID=MS.gene90496.t1.exon1;Parent=MS.gene90496.t1
chr8.3 CDS 23624957 23626321 23624957 ID=cds.MS.gene90496.t1;Parent=MS.gene90496.t1
Gene Sequence

>MS.gene90496

ATGGATTCCATCAAGGTGATATCCACAACAACAATTCAAGCACCAATTGACAACAATAATAATCTCAATTCAACTGATTATCAGAAAATTGATCTAACACCATGGGATCTCCGATTCCTTCCACTTGAAACCATCCAAAGAGGCCTTCTTTTCCACCAACCCATTCCTAACCAAAACCAAATCAACCATCTCAAACAAACACTTTCCACCACACTCTCATTCTTCCCACCCTTTGCAGGGCGTCTTGTAATCACCCAACACAACGACACCACAAACAACAACAACAACAACAACACATCATGTTCCATCATTTGCAACAACCTCGGTGCACTCTTCGTCCACGCCACAGCACAAAACACAACTGTCGCGGACATCCTTCAATCCAACTACACACCTCCAATTGTCCACTCATTTTTTACACTTAACGGTGTTAAAAACTACGAAGCTACGTCAAAACCAACTCTAGCAATTCAGGTAACGGAGTTAAGTGACGGCATCTTCATTGGCTTCACATGCAACCACGCTGTTGTAGACGCCAAGTCGTTTTGGCATTTCGTTAATTCTTGGTCCCAAATCTCGAAAGGTTCCCACAAAATACCAAAACTCCCTTCATTTCAACGTTGGTTCCCAAACGATATTGAAATTCCAATACGCTTCCCTTTCACACAAATACAATCACAAAACCAAGACTCCTCAGAAGAAAGCTTAGAATCCAATTTAGCTGAAAGAATCTTCCATTTCACAAAGGAGAAAATCGCGGAACTGAAATCAAAAGCAAACGCAGAAGCCGAAACAGATAAAACTAAAATATCTTCGCTTCAAGCACTATTATCTCATGTTTGGCGTTCTGTTGTTCGTTGCAAAAAACACGATCCACAAGAAGATGTTTTCTATGTGTTGATGATAGATGTTAGACCAAGGATGATTCCACCTTTGGAAGAAGATTATTTCGGAAACGCAGTAGTGGTTAATGGTGTGAGGATGAAAGCAGGGGAGGTTCTAGAGTGTGAAATCGGAAAAGTTGCTTTAGAGATAAACAAGATGATTTCGTTACAATCTGATGAGAAAATAAGGAACCATTACGAATCTTGGTTGAGAACACCAACGTTGTTCCGAAGTGGTAGTTCGCTAGGTGGTAATATGTTGGCAATGAGCAGTTCTCCGAGATTTGATGTTTTTGGCAATGATTTTGGTTGGGGAAAGCCTGTGGCGTTTCGAAGTGGGAGTGGTAATAAAAATAATGGAAAAATTAGTGTGTTTGCTGGTGCTGAAGAAGGTAGTATAGATGTTGAAATGTGTCTTTCTTATGAGATTTTGGAGGCTTTGGGAAATGATGTTGAGTTCTTGGTTCCTAGTTCTAAGTAA

Protein sequence

>MS.gene90496.t1

MDSIKVISTTTIQAPIDNNNNLNSTDYQKIDLTPWDLRFLPLETIQRGLLFHQPIPNQNQINHLKQTLSTTLSFFPPFAGRLVITQHNDTTNNNNNNNTSCSIICNNLGALFVHATAQNTTVADILQSNYTPPIVHSFFTLNGVKNYEATSKPTLAIQVTELSDGIFIGFTCNHAVVDAKSFWHFVNSWSQISKGSHKIPKLPSFQRWFPNDIEIPIRFPFTQIQSQNQDSSEESLESNLAERIFHFTKEKIAELKSKANAEAETDKTKISSLQALLSHVWRSVVRCKKHDPQEDVFYVLMIDVRPRMIPPLEEDYFGNAVVVNGVRMKAGEVLECEIGKVALEINKMISLQSDEKIRNHYESWLRTPTLFRSGSSLGGNMLAMSSSPRFDVFGNDFGWGKPVAFRSGSGNKNNGKISVFAGAEEGSIDVEMCLSYEILEALGNDVEFLVPSSK