AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56795

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56795.t1 MTR_4g094832 71.429 301 79 2 3 301 136 431 3.55e-157 446
MS.gene56795.t1 MTR_4g094835 68.562 299 87 2 4 300 153 446 2.08e-150 429
MS.gene56795.t1 MTR_4g094838 66.777 301 77 3 3 301 154 433 2.29e-140 403
MS.gene56795.t1 MTR_4g094842 59.797 296 112 5 3 296 154 444 2.85e-123 360
MS.gene56795.t1 MTR_0190s0020 58.644 295 116 5 3 296 149 438 9.71e-120 351
MS.gene56795.t1 MTR_4g022825 57.947 302 114 6 3 296 140 436 5.15e-119 349
MS.gene56795.t1 MTR_8g041770 56.949 295 120 5 3 296 149 437 1.02e-114 338
MS.gene56795.t1 MTR_4g022800 56.579 304 117 7 3 296 140 438 3.98e-114 337
MS.gene56795.t1 MTR_4g022720 56.902 297 120 5 3 296 140 431 8.45e-113 333
MS.gene56795.t1 MTR_3g088420 57.432 296 118 6 3 296 140 429 2.18e-112 332
MS.gene56795.t1 MTR_4g022670 54.455 303 124 6 3 296 140 437 6.34e-111 328
MS.gene56795.t1 MTR_4g094828 53.667 300 127 7 3 292 145 442 1.77e-107 320
MS.gene56795.t1 MTR_7g026860 54.305 302 123 6 3 296 140 434 4.32e-106 316
MS.gene56795.t1 MTR_3g026310 52.427 309 128 7 3 296 140 444 1.66e-104 312
MS.gene56795.t1 MTR_8g079710 55.034 298 119 7 3 291 145 436 8.57e-104 310
MS.gene56795.t1 MTR_4g022290 54.000 300 120 8 3 292 146 437 7.15e-101 303
MS.gene56795.t1 MTR_4g094825 84.516 155 14 1 147 301 248 392 3.15e-86 264
MS.gene56795.t1 MTR_4g094825 76.923 39 9 0 3 41 212 250 7.42e-14 71.6
MS.gene56795.t1 MTR_4g022760 47.020 302 104 5 3 296 140 393 1.37e-84 259
MS.gene56795.t1 MTR_8g040780 56.872 211 86 3 88 295 19 227 2.07e-77 236
MS.gene56795.t1 MTR_3g101900 40.134 299 167 5 3 296 153 444 6.12e-68 218
MS.gene56795.t1 MTR_3g102020 40.000 300 167 5 3 296 155 447 5.32e-65 211
MS.gene56795.t1 MTR_3g101930 37.874 301 174 3 3 296 157 451 4.24e-64 209
MS.gene56795.t1 MTR_3g101960 39.262 298 170 4 3 295 154 445 5.85e-62 203
MS.gene56795.t1 MTR_3g101970 38.305 295 165 4 3 296 155 433 7.66e-61 199
MS.gene56795.t1 MTR_3g102010 39.145 304 168 5 3 296 151 447 3.92e-60 198
MS.gene56795.t1 MTR_5g081960 33.520 358 167 8 3 301 142 487 5.30e-59 196
MS.gene56795.t1 MTR_4g015180 32.764 351 172 6 1 296 142 483 5.47e-54 183
MS.gene56795.t1 MTR_6g016815 39.189 296 106 9 3 296 154 377 7.18e-54 180
MS.gene56795.t1 MTR_3g070170 34.639 332 175 6 3 300 147 470 5.09e-53 180
MS.gene56795.t1 MTR_7g026770 48.066 181 67 4 4 182 132 287 3.92e-46 157
MS.gene56795.t1 MTR_6g034485 55.385 130 53 2 49 178 1 125 7.95e-46 151
MS.gene56795.t1 MTR_6g045553 31.288 326 192 6 3 297 148 472 2.79e-43 154
MS.gene56795.t1 MTR_3g102030 32.031 256 138 3 3 254 97 320 8.17e-41 144
MS.gene56795.t1 MTR_4g007540 26.552 290 194 8 12 289 144 426 2.97e-23 99.4
MS.gene56795.t1 MTR_3g049150 25.418 299 200 7 10 287 141 437 3.20e-22 96.3
MS.gene56795.t1 MTR_3g026950 25.249 301 193 9 11 285 143 437 3.77e-22 96.3
MS.gene56795.t1 MTR_3g098980 27.368 285 189 10 3 281 146 418 3.80e-22 96.3
MS.gene56795.t1 MTR_7g026780 46.296 108 32 3 189 296 26 107 1.43e-21 87.8
MS.gene56795.t1 MTR_2g105330 23.810 294 199 6 12 285 144 432 1.23e-19 89.0
MS.gene56795.t1 MTR_7g026800 38.037 163 67 6 78 237 29 160 1.93e-19 84.7
MS.gene56795.t1 MTR_6g015315 26.332 319 198 8 3 289 142 455 4.02e-19 87.4
MS.gene56795.t1 MTR_8g096530 28.958 259 161 8 4 252 140 385 4.04e-19 87.4
MS.gene56795.t1 MTR_2g064495 23.297 279 200 5 12 281 144 417 4.48e-19 87.4
MS.gene56795.t1 MTR_4g022780 36.364 165 73 6 78 240 30 164 7.47e-19 82.4
MS.gene56795.t1 MTR_3g049140 26.872 227 144 6 77 287 14 234 4.36e-18 82.4
MS.gene56795.t1 MTR_8g075610 23.345 287 203 8 12 289 135 413 4.68e-18 84.3
MS.gene56795.t1 MTR_6g015320 27.389 314 185 13 3 287 145 444 1.62e-17 82.8
MS.gene56795.t1 MTR_6g015815 24.595 309 206 9 3 289 149 452 3.47e-17 82.0
MS.gene56795.t1 MTR_4g127650 22.712 295 194 6 12 281 155 440 6.52e-17 80.9
MS.gene56795.t1 MTR_4g097090 23.279 305 196 9 5 281 146 440 7.36e-17 80.9
MS.gene56795.t1 MTR_6g015850 23.701 308 207 7 3 289 149 449 1.73e-16 79.7
MS.gene56795.t1 MTR_8g040760 51.429 70 33 1 3 71 146 215 1.86e-16 77.0
MS.gene56795.t1 MTR_1g081660 25.407 307 210 11 4 300 154 451 5.87e-16 78.2
MS.gene56795.t1 MTR_7g084940 26.506 249 157 7 12 249 159 392 2.71e-14 73.2
MS.gene56795.t1 MTR_7g027175 26.408 284 189 9 12 287 158 429 3.26e-14 72.8
MS.gene56795.t1 MTR_1g040195 23.871 310 184 12 4 287 122 405 5.17e-14 72.4
MS.gene56795.t1 MTR_3g087640 27.707 314 182 14 12 294 170 469 7.01e-14 72.0
MS.gene56795.t1 MTR_3g071320 27.273 220 141 6 4 209 141 355 2.31e-13 70.5
MS.gene56795.t1 MTR_2g089755 27.612 268 153 13 12 250 175 430 3.35e-13 70.1
MS.gene56795.t1 MTR_4g055170 26.190 210 145 4 5 208 150 355 3.23e-12 67.0
MS.gene56795.t1 MTR_7g026850 53.571 56 24 1 3 56 123 178 3.25e-12 64.3
MS.gene56795.t1 MTR_7g014330 23.372 261 174 7 12 249 152 409 5.01e-12 66.6
MS.gene56795.t1 MTR_5g090810 24.436 266 173 7 12 250 148 412 5.36e-12 66.2
MS.gene56795.t1 MTR_2g089765 25.704 284 163 12 3 249 162 434 6.53e-12 66.2
MS.gene56795.t1 MTR_5g026320 24.921 317 197 12 4 295 148 448 7.44e-12 65.9
MS.gene56795.t1 MTR_7g026880 57.778 45 19 0 252 296 5 49 8.40e-12 59.7
MS.gene56795.t1 MTR_7g014250 25.279 269 159 10 12 249 152 409 1.01e-11 65.5
MS.gene56795.t1 MTR_4g013050 22.727 264 157 8 4 252 134 365 1.20e-11 65.1
MS.gene56795.t1 MTR_1g053315 21.429 294 202 12 5 281 164 445 1.64e-11 65.1
MS.gene56795.t1 MTR_5g084870 25.692 253 154 9 12 250 144 376 1.91e-11 64.7
MS.gene56795.t1 MTR_6g034495 64.103 39 14 0 3 41 122 160 3.21e-11 61.2
MS.gene56795.t1 MTR_8g012750 26.573 286 158 13 3 249 150 422 4.56e-11 63.5
MS.gene56795.t1 MTR_7g026870 44.286 70 33 2 145 208 82 151 8.58e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56795.t1 AT5G67150 42.140 299 163 4 3 296 149 442 1.28e-79 248
MS.gene56795.t1 AT3G50270 41.216 296 170 4 4 296 150 444 1.24e-68 220
MS.gene56795.t1 AT3G50300 39.867 301 170 4 3 296 147 443 1.69e-67 217
MS.gene56795.t1 AT3G50280 37.374 297 180 3 3 296 16 309 6.58e-66 209
MS.gene56795.t1 AT3G50280 37.374 297 180 3 3 296 146 439 1.39e-64 209
MS.gene56795.t1 AT5G67160 38.176 296 168 5 4 295 143 427 1.23e-63 207
MS.gene56795.t1 AT5G07850 39.203 301 169 6 3 296 156 449 2.21e-60 199
MS.gene56795.t1 AT5G07860 39.735 302 161 7 3 296 157 445 5.39e-60 198
MS.gene56795.t1 AT5G42830 36.304 303 177 5 3 296 150 445 2.81e-59 196
MS.gene56795.t1 AT5G01210 34.139 331 176 6 1 296 142 465 3.93e-59 196
MS.gene56795.t1 AT5G38130 36.042 283 172 3 3 282 167 443 5.40e-58 193
MS.gene56795.t1 AT5G07870 37.217 309 170 5 3 296 158 457 1.89e-55 186
MS.gene56795.t1 AT3G50290 38.800 250 146 3 3 247 22 269 8.96e-53 174
MS.gene56795.t1 AT5G23940 34.884 301 189 6 3 297 150 449 1.49e-52 179
MS.gene56795.t1 AT2G39980 31.412 347 172 7 3 296 143 476 2.40e-52 179
MS.gene56795.t1 AT2G19070 25.168 298 203 5 12 289 146 443 6.70e-23 98.6
MS.gene56795.t1 AT3G29590 24.832 298 198 8 12 291 153 442 2.42e-21 94.0
MS.gene56795.t1 AT5G48930 24.113 282 201 4 12 284 144 421 2.44e-19 88.2
MS.gene56795.t1 AT3G29635 25.497 302 192 10 3 281 147 438 5.30e-19 87.0
MS.gene56795.t1 AT5G39050 24.832 298 190 11 12 282 160 450 2.48e-18 85.5
MS.gene56795.t1 AT5G41040 26.370 292 188 9 3 281 149 426 1.20e-17 83.2
MS.gene56795.t1 AT5G41040 26.370 292 188 9 3 281 165 442 1.30e-17 83.2
MS.gene56795.t1 AT3G48720 26.877 253 169 9 4 250 143 385 1.32e-17 83.2
MS.gene56795.t1 AT1G78990 27.547 265 169 8 3 250 138 396 1.37e-16 80.1
MS.gene56795.t1 AT5G61160 25.806 279 179 10 3 261 144 414 1.24e-15 77.4
MS.gene56795.t1 AT1G28680 27.160 243 166 6 12 250 152 387 2.08e-15 76.6
MS.gene56795.t1 AT3G29670 26.263 297 192 12 3 281 146 433 2.85e-14 73.2
MS.gene56795.t1 AT1G28680 27.778 198 137 4 12 206 152 346 7.06e-14 72.0
MS.gene56795.t1 AT3G29680 25.448 279 160 7 12 261 152 411 4.40e-13 69.7
MS.gene56795.t1 AT5G57840 27.243 301 181 13 5 281 136 422 5.56e-13 69.3
MS.gene56795.t1 AT1G24420 24.415 299 199 12 12 300 148 429 5.58e-12 66.2
MS.gene56795.t1 AT1G24420 24.415 299 199 12 12 300 148 429 5.58e-12 66.2
MS.gene56795.t1 AT1G24430 23.443 273 179 9 12 273 144 397 6.95e-12 65.9
MS.gene56795.t1 AT5G16410 24.535 269 170 10 3 250 163 419 2.29e-11 64.7
MS.gene56795.t1 AT3G47170 23.618 199 139 4 3 188 154 352 3.19e-11 63.9

Find 59 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATTCTTTCAGCTAAAT+TGG 0.161367 8.2:-25499563 None:intergenic
GTGTCTTTCTTATGAGATTT+TGG 0.228049 8.2:+25500146 MS.gene56795:CDS
CGTTGAAATGAAGGGAGTTT+TGG 0.257934 8.2:-25499448 None:intergenic
GGAAACGCGGTAGTGGTTAA+TGG 0.258596 8.2:+25499802 MS.gene56795:CDS
TACATTCTGCTGAGAAAATA+AGG 0.265034 8.2:+25499902 MS.gene56795:CDS
TATGGGAACCTTTCGAGATT+TGG 0.266155 8.2:-25499420 None:intergenic
GGGAAATGATGTTGAGTTCT+TGG 0.297726 8.2:+25500176 MS.gene56795:CDS
TTTGGCATTTCGTTAATTCT+TGG 0.304274 8.2:+25499395 MS.gene56795:CDS
ATGGGAACCTTTCGAGATTT+GGG 0.326542 8.2:-25499419 None:intergenic
TAAGGAACCATTACGAATCT+TGG 0.357996 8.2:+25499920 MS.gene56795:CDS
ACCAAGGATGATTCCACCTT+TGG 0.373650 8.2:+25499765 MS.gene56795:CDS
ATTGGAATTTCAATATCGTT+TGG 0.377241 8.2:-25499478 None:intergenic
TTGGAATTTCAATATCGTTT+GGG 0.377876 8.2:-25499477 None:intergenic
AAGTACTATTATCTCATGTT+TGG 0.384120 8.2:+25499671 MS.gene56795:CDS
TTGTAGACGCCAAGTCGTTT+TGG 0.392431 8.2:+25499377 MS.gene56795:CDS
AGCTTTCTTCTGAGGAGTCT+TGG 0.397249 8.2:-25499534 None:intergenic
TGTTGTGGATATCACCTTGA+TGG 0.409513 8.2:-25498867 None:intergenic
TTAAGTGACGGCATCTTCAT+TGG 0.417429 8.2:+25499334 MS.gene56795:CDS
CCTTTGGAAGAAGATTATTT+CGG 0.422258 8.2:+25499781 MS.gene56795:CDS
TGTGTGAAAGGGAAGCGTAT+TGG 0.429614 8.2:-25499496 None:intergenic
CAGTCACATTACTTAGAACT+AGG 0.433385 8.2:-25500201 None:intergenic
TCCAAAGGTGGAATCATCCT+TGG 0.454320 8.2:-25499766 None:intergenic
CCGAAATAATCTTCTTCCAA+AGG 0.467292 8.2:-25499781 None:intergenic
GGGAACCAACGTTGAAATGA+AGG 0.474068 8.2:-25499457 None:intergenic
TTCTCAACCAAGATTCGTAA+TGG 0.489014 8.2:-25499927 None:intergenic
GAGGTTCTAGAGTGTGAAAT+CGG 0.491146 8.2:+25499844 MS.gene56795:CDS
AACGAAATGCCAAAACGACT+TGG 0.492743 8.2:-25499386 None:intergenic
TGTGATTGTATTTGTGTGAA+AGG 0.505410 8.2:-25499508 None:intergenic
TTATTTCGGAAACGCGGTAG+TGG 0.506417 8.2:+25499795 MS.gene56795:CDS
CTTCTTCATGGATTCCATCA+AGG 0.511613 8.2:+25498853 None:intergenic
AATGGTGTGAGGATGAAAGC+AGG 0.512088 8.2:+25499820 MS.gene56795:CDS
GTGATTGTATTTGTGTGAAA+GGG 0.534325 8.2:-25499507 None:intergenic
CTCCCACTTCGAAACGCCAC+AGG 0.534418 8.2:-25500054 None:intergenic
GGATTCTAAGCTTTCTTCTG+AGG 0.535259 8.2:-25499542 None:intergenic
TTCCGAAGTGGTAGTTCGCT+AGG 0.540203 8.2:+25499961 MS.gene56795:CDS
AGCCTGTGGCGTTTCGAAGT+GGG 0.545492 8.2:+25500052 MS.gene56795:CDS
AACTCCCTTCATTTCAACGT+TGG 0.545872 8.2:+25499452 MS.gene56795:CDS
GTGGCGTTTCGAAGTGGGAG+TGG 0.549176 8.2:+25500057 MS.gene56795:CDS
ATGGTGTGAGGATGAAAGCA+GGG 0.551554 8.2:+25499821 MS.gene56795:CDS
GTGTTTGCTGGTGCTGAAGA+AGG 0.553326 8.2:+25500105 MS.gene56795:CDS
TTCGCTAGGTGGTAATATGT+TGG 0.564328 8.2:+25499975 MS.gene56795:CDS
AAATAATCTTCTTCCAAAGG+TGG 0.566011 8.2:-25499778 None:intergenic
GGAACCAACGTTGAAATGAA+GGG 0.576282 8.2:-25499456 None:intergenic
TCTTGGTCCCAAATCTCGAA+AGG 0.578370 8.2:+25499412 MS.gene56795:CDS
CACCTAGCGAACTACCACTT+CGG 0.583535 8.2:-25499963 None:intergenic
ACATAGAAAACATCTTCTTG+TGG 0.596961 8.2:-25499724 None:intergenic
AAGCCTGTGGCGTTTCGAAG+TGG 0.599152 8.2:+25500051 MS.gene56795:CDS
ACACCAACGTTGTTCCGAAG+TGG 0.610004 8.2:+25499949 MS.gene56795:CDS
CTACCACTTCGGAACAACGT+TGG 0.629293 8.2:-25499952 None:intergenic
AAGAATCTTCCATTTCACAA+AGG 0.647468 8.2:+25499576 MS.gene56795:CDS
TGGTGTGAGGATGAAAGCAG+GGG 0.647651 8.2:+25499822 MS.gene56795:CDS
CGAAGTGGTAGTTCGCTAGG+TGG 0.653912 8.2:+25499964 MS.gene56795:CDS
CAGGTAACGGAGTTAAGTGA+CGG 0.655221 8.2:+25499322 MS.gene56795:intron
TGTGAGGATGAAAGCAGGGG+AGG 0.662636 8.2:+25499825 MS.gene56795:CDS
CGGTAGTGGTTAATGGTGTG+AGG 0.683331 8.2:+25499809 MS.gene56795:CDS
TTTCACAAAGGAGAAAATCG+CGG 0.713213 8.2:+25499588 MS.gene56795:CDS
AGAAGATTATTTCGGAAACG+CGG 0.717549 8.2:+25499789 MS.gene56795:CDS
ACTTGGCGTCTACAACAGCG+TGG 0.778771 8.2:-25499369 None:intergenic
TGATGATAGATGTTAGACCA+AGG 0.780037 8.2:+25499749 MS.gene56795:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAGATTTATCTGTTT+CGG - chr8.2:25499641-25499660 None:intergenic 15.0%
!! AGATTATTATTGTTGTCAAT+TGG - chr8.2:25498905-25498924 None:intergenic 20.0%
! AAGTACTATTATCTCATGTT+TGG + chr8.2:25499671-25499690 MS.gene56795:CDS 25.0%
! ATTGGAATTTCAATATCGTT+TGG - chr8.2:25499481-25499500 None:intergenic 25.0%
! TTGGAATTTCAATATCGTTT+GGG - chr8.2:25499480-25499499 None:intergenic 25.0%
!!! CACTCATTTTTTACACTTAA+CGG + chr8.2:25499256-25499275 MS.gene56795:intron 25.0%
AAATAATCTTCTTCCAAAGG+TGG - chr8.2:25499781-25499800 None:intergenic 30.0%
AAGAATCTTCCATTTCACAA+AGG + chr8.2:25499576-25499595 MS.gene56795:CDS 30.0%
ACATAGAAAACATCTTCTTG+TGG - chr8.2:25499727-25499746 None:intergenic 30.0%
AGAAAATTGATCTAACACCA+TGG + chr8.2:25498942-25498961 MS.gene56795:intron 30.0%
CGTTAAGTGTAAAAAATGAG+TGG - chr8.2:25499258-25499277 None:intergenic 30.0%
GAAAATTGATCTAACACCAT+GGG + chr8.2:25498943-25498962 MS.gene56795:intron 30.0%
GAAGATTCTTTCAGCTAAAT+TGG - chr8.2:25499566-25499585 None:intergenic 30.0%
GGGAGTGGTAATAAAAATAA+TGG + chr8.2:25500072-25500091 MS.gene56795:CDS 30.0%
GTAAAAAATGAGTGGACAAT+TGG - chr8.2:25499250-25499269 None:intergenic 30.0%
GTGATTGTATTTGTGTGAAA+GGG - chr8.2:25499510-25499529 None:intergenic 30.0%
TACATTCTGCTGAGAAAATA+AGG + chr8.2:25499902-25499921 MS.gene56795:CDS 30.0%
TGTGATTGTATTTGTGTGAA+AGG - chr8.2:25499511-25499530 None:intergenic 30.0%
TTGCCAAAAACATCAAATCT+CGG - chr8.2:25500015-25500034 None:intergenic 30.0%
TTTGGCATTTCGTTAATTCT+TGG + chr8.2:25499395-25499414 MS.gene56795:CDS 30.0%
! CCTTTGGAAGAAGATTATTT+CGG + chr8.2:25499781-25499800 MS.gene56795:CDS 30.0%
! GTGTCTTTCTTATGAGATTT+TGG + chr8.2:25500146-25500165 MS.gene56795:CDS 30.0%
! TCTTTCTTATGAGATTTTGG+AGG + chr8.2:25500149-25500168 MS.gene56795:CDS 30.0%
! TTTGTTTGAGATGGTTGATT+TGG - chr8.2:25499039-25499058 None:intergenic 30.0%
!! AAGGGAGTTTTGGTATTTTA+TGG - chr8.2:25499441-25499460 None:intergenic 30.0%
!! AGGGAGTTTTGGTATTTTAT+GGG - chr8.2:25499440-25499459 None:intergenic 30.0%
!! TTTTTGGCAATGATTTTGGT+TGG + chr8.2:25500025-25500044 MS.gene56795:CDS 30.0%
!!! ATTTGGTTTTGGTTAGGAAT+GGG - chr8.2:25499022-25499041 None:intergenic 30.0%
!!! GATGTTTTTGGCAATGATTT+TGG + chr8.2:25500021-25500040 MS.gene56795:CDS 30.0%
!!! TTTTGGCAATGATTTTGGTT+GGG + chr8.2:25500026-25500045 MS.gene56795:CDS 30.0%
AAAAATGAGTGGACAATTGG+AGG - chr8.2:25499247-25499266 None:intergenic 35.0%
AAAACCAACTCTAGCAATTC+AGG + chr8.2:25499303-25499322 MS.gene56795:intron 35.0%
AACTCTAGCAATTCAGGTAA+CGG + chr8.2:25499309-25499328 MS.gene56795:intron 35.0%
AGAAGATTATTTCGGAAACG+CGG + chr8.2:25499789-25499808 MS.gene56795:CDS 35.0%
CCGAAATAATCTTCTTCCAA+AGG - chr8.2:25499784-25499803 None:intergenic 35.0%
GGAAAAATTAGTGTGTTTGC+TGG + chr8.2:25500093-25500112 MS.gene56795:CDS 35.0%
TAAGGAACCATTACGAATCT+TGG + chr8.2:25499920-25499939 MS.gene56795:CDS 35.0%
TGATGATAGATGTTAGACCA+AGG + chr8.2:25499749-25499768 MS.gene56795:CDS 35.0%
TTCTCAACCAAGATTCGTAA+TGG - chr8.2:25499930-25499949 None:intergenic 35.0%
TTTCACAAAGGAGAAAATCG+CGG + chr8.2:25499588-25499607 MS.gene56795:CDS 35.0%
! CGATTTTCTCCTTTGTGAAA+TGG - chr8.2:25499588-25499607 None:intergenic 35.0%
! TCTCCGAGATTTGATGTTTT+TGG + chr8.2:25500009-25500028 MS.gene56795:CDS 35.0%
!! TATGAGATTTTGGAGGCTTT+GGG + chr8.2:25500156-25500175 MS.gene56795:CDS 35.0%
!! TGATGTGTTGTTGTTGTTTG+TGG - chr8.2:25499131-25499150 None:intergenic 35.0%
!! TGGAAAGTGTTTGTTTGAGA+TGG - chr8.2:25499048-25499067 None:intergenic 35.0%
!! TTATGAGATTTTGGAGGCTT+TGG + chr8.2:25500155-25500174 MS.gene56795:CDS 35.0%
!!! GATTTGGTTTTGGTTAGGAA+TGG - chr8.2:25499023-25499042 None:intergenic 35.0%
!!! TGAGATGGTTGATTTGGTTT+TGG - chr8.2:25499033-25499052 None:intergenic 35.0%
!!! TGGTTGATTTGGTTTTGGTT+AGG - chr8.2:25499028-25499047 None:intergenic 35.0%
!!! TTTGGCAATGATTTTGGTTG+GGG + chr8.2:25500027-25500046 MS.gene56795:CDS 35.0%
AACGAAATGCCAAAACGACT+TGG - chr8.2:25499389-25499408 None:intergenic 40.0%
AACTCCCTTCATTTCAACGT+TGG + chr8.2:25499452-25499471 MS.gene56795:CDS 40.0%
ATGGGAACCTTTCGAGATTT+GGG - chr8.2:25499422-25499441 None:intergenic 40.0%
GGAACCAACGTTGAAATGAA+GGG - chr8.2:25499459-25499478 None:intergenic 40.0%
GGATTCTAAGCTTTCTTCTG+AGG - chr8.2:25499545-25499564 None:intergenic 40.0%
GGGAAATGATGTTGAGTTCT+TGG + chr8.2:25500176-25500195 MS.gene56795:CDS 40.0%
GTTACCTGAATTGCTAGAGT+TGG - chr8.2:25499310-25499329 None:intergenic 40.0%
TATGGGAACCTTTCGAGATT+TGG - chr8.2:25499423-25499442 None:intergenic 40.0%
TCCATCATTTGCAACAACCT+CGG + chr8.2:25499154-25499173 MS.gene56795:intron 40.0%
TGTTGTGGATATCACCTTGA+TGG - chr8.2:25498870-25498889 None:intergenic 40.0%
TTAAGTGACGGCATCTTCAT+TGG + chr8.2:25499334-25499353 MS.gene56795:CDS 40.0%
TTCGCTAGGTGGTAATATGT+TGG + chr8.2:25499975-25499994 MS.gene56795:CDS 40.0%
! CGTTGAAATGAAGGGAGTTT+TGG - chr8.2:25499451-25499470 None:intergenic 40.0%
! TGGTGCTTGAATTGTTGTTG+TGG - chr8.2:25498885-25498904 None:intergenic 40.0%
! TGGTTTCAAGTGGAAGGAAT+CGG - chr8.2:25498973-25498992 None:intergenic 40.0%
! TTTGGATGGTTTCAAGTGGA+AGG - chr8.2:25498979-25498998 None:intergenic 40.0%
!! GAGGTTCTAGAGTGTGAAAT+CGG + chr8.2:25499844-25499863 MS.gene56795:CDS 40.0%
AATGGTGTGAGGATGAAAGC+AGG + chr8.2:25499820-25499839 MS.gene56795:CDS 45.0%
ACCAAGGATGATTCCACCTT+TGG + chr8.2:25499765-25499784 MS.gene56795:CDS 45.0%
ACCGAGGTTGTTGCAAATGA+TGG - chr8.2:25499158-25499177 None:intergenic 45.0%
AGCACAAAACACAACTGTCG+CGG + chr8.2:25499198-25499217 MS.gene56795:intron 45.0%
ATGGTGTGAGGATGAAAGCA+GGG + chr8.2:25499821-25499840 MS.gene56795:CDS 45.0%
ATTACAAGACGCCCTGCAAA+GGG - chr8.2:25499091-25499110 None:intergenic 45.0%
CCACTTGAAACCATCCAAAG+AGG + chr8.2:25498980-25498999 MS.gene56795:intron 45.0%
CCTCTTTGGATGGTTTCAAG+TGG - chr8.2:25498983-25499002 None:intergenic 45.0%
GAAAAGAAGGCCTCTTTGGA+TGG - chr8.2:25498993-25499012 None:intergenic 45.0%
GAGGTGTGTAGTTGGATTGA+AGG - chr8.2:25499228-25499247 None:intergenic 45.0%
GGGAACCAACGTTGAAATGA+AGG - chr8.2:25499460-25499479 None:intergenic 45.0%
TCCAAAGGTGGAATCATCCT+TGG - chr8.2:25499769-25499788 None:intergenic 45.0%
TCTTGGTCCCAAATCTCGAA+AGG + chr8.2:25499412-25499431 MS.gene56795:CDS 45.0%
TTATTTCGGAAACGCGGTAG+TGG + chr8.2:25499795-25499814 MS.gene56795:CDS 45.0%
! AGCTTTCTTCTGAGGAGTCT+TGG - chr8.2:25499537-25499556 None:intergenic 45.0%
! GACAATTGGAGGTGTGTAGT+TGG - chr8.2:25499236-25499255 None:intergenic 45.0%
! GACAGTTGTGTTTTGTGCTG+TGG - chr8.2:25499197-25499216 None:intergenic 45.0%
! TGTGTGAAAGGGAAGCGTAT+TGG - chr8.2:25499499-25499518 None:intergenic 45.0%
! TTGTAGACGCCAAGTCGTTT+TGG + chr8.2:25499377-25499396 MS.gene56795:CDS 45.0%
!! CAGGTAACGGAGTTAAGTGA+CGG + chr8.2:25499322-25499341 MS.gene56795:intron 45.0%
!! GAATGGGTTGGTGGAAAAGA+AGG - chr8.2:25499006-25499025 None:intergenic 45.0%
!! GTTTGTGGTGTCGTTGTGTT+GGG - chr8.2:25499116-25499135 None:intergenic 45.0%
!! TGTTTGTGGTGTCGTTGTGT+TGG - chr8.2:25499117-25499136 None:intergenic 45.0%
!! TTTGGTTAGGAATGGGTTGG+TGG - chr8.2:25499015-25499034 None:intergenic 45.0%
!!! GGTTTTGGTTAGGAATGGGT+TGG - chr8.2:25499018-25499037 None:intergenic 45.0%
ACACCAACGTTGTTCCGAAG+TGG + chr8.2:25499949-25499968 MS.gene56795:CDS 50.0%
CACCTAGCGAACTACCACTT+CGG - chr8.2:25499966-25499985 None:intergenic 50.0%
CATTCTTCCCACCCTTTGCA+GGG + chr8.2:25499077-25499096 MS.gene56795:intron 50.0%
CTACCACTTCGGAACAACGT+TGG - chr8.2:25499955-25499974 None:intergenic 50.0%
GATTACAAGACGCCCTGCAA+AGG - chr8.2:25499092-25499111 None:intergenic 50.0%
GGTGGAAAAGAAGGCCTCTT+TGG - chr8.2:25498997-25499016 None:intergenic 50.0%
TCATTCTTCCCACCCTTTGC+AGG + chr8.2:25499076-25499095 MS.gene56795:intron 50.0%
TGGTGTGAGGATGAAAGCAG+GGG + chr8.2:25499822-25499841 MS.gene56795:CDS 50.0%
TTCCGAAGTGGTAGTTCGCT+AGG + chr8.2:25499961-25499980 MS.gene56795:CDS 50.0%
! CGGTAGTGGTTAATGGTGTG+AGG + chr8.2:25499809-25499828 MS.gene56795:CDS 50.0%
! GGAAACGCGGTAGTGGTTAA+TGG + chr8.2:25499802-25499821 MS.gene56795:CDS 50.0%
! GTGTTTGCTGGTGCTGAAGA+AGG + chr8.2:25500105-25500124 MS.gene56795:CDS 50.0%
! TGGGAAGAATGAGAGTGTGG+TGG - chr8.2:25499068-25499087 None:intergenic 50.0%
! TTGTGTTTTGTGCTGTGGCG+TGG - chr8.2:25499192-25499211 None:intergenic 50.0%
!! TTTTGGTTGGGGAAAGCCTG+TGG + chr8.2:25500038-25500057 MS.gene56795:CDS 50.0%
AAGCCTGTGGCGTTTCGAAG+TGG + chr8.2:25500051-25500070 MS.gene56795:CDS 55.0%
ACTTGGCGTCTACAACAGCG+TGG - chr8.2:25499372-25499391 None:intergenic 55.0%
AGCCTGTGGCGTTTCGAAGT+GGG + chr8.2:25500052-25500071 MS.gene56795:CDS 55.0%
CGAAGTGGTAGTTCGCTAGG+TGG + chr8.2:25499964-25499983 MS.gene56795:CDS 55.0%
GGAAGGAATCGGAGATCCCA+TGG - chr8.2:25498962-25498981 None:intergenic 55.0%
GGGTGGGAAGAATGAGAGTG+TGG - chr8.2:25499071-25499090 None:intergenic 55.0%
TGTGAGGATGAAAGCAGGGG+AGG + chr8.2:25499825-25499844 MS.gene56795:CDS 55.0%
ACAAGACGCCCTGCAAAGGG+TGG - chr8.2:25499088-25499107 None:intergenic 60.0%
CAAGACGCCCTGCAAAGGGT+GGG - chr8.2:25499087-25499106 None:intergenic 60.0%
CTCCCACTTCGAAACGCCAC+AGG - chr8.2:25500057-25500076 None:intergenic 60.0%
GTGGCGTTTCGAAGTGGGAG+TGG + chr8.2:25500057-25500076 MS.gene56795:CDS 60.0%
! CGTGGACGAAGAGTGCACCG+AGG - chr8.2:25499174-25499193 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 25498860 25500215 25498860 ID=MS.gene56795
chr8.2 mRNA 25498860 25500215 25498860 ID=MS.gene56795.t1;Parent=MS.gene56795
chr8.2 exon 25498860 25498874 25498860 ID=MS.gene56795.t1.exon1;Parent=MS.gene56795.t1
chr8.2 CDS 25498860 25498874 25498860 ID=cds.MS.gene56795.t1;Parent=MS.gene56795.t1
chr8.2 exon 25499325 25500215 25499325 ID=MS.gene56795.t1.exon2;Parent=MS.gene56795.t1
chr8.2 CDS 25499325 25500215 25499325 ID=cds.MS.gene56795.t1;Parent=MS.gene56795.t1
Gene Sequence

>MS.gene56795

ATGGATTCCATCAAGGTGATATCCACAACAACAATTCAAGCACCAATTGACAACAATAATAATCTCAATTCAACTGATTATCAGAAAATTGATCTAACACCATGGGATCTCCGATTCCTTCCACTTGAAACCATCCAAAGAGGCCTTCTTTTCCACCAACCCATTCCTAACCAAAACCAAATCAACCATCTCAAACAAACACTTTCCACCACACTCTCATTCTTCCCACCCTTTGCAGGGCGTCTTGTAATCACCCAACACAACGACACCACAAACAACAACAACACATCATGTTCCATCATTTGCAACAACCTCGGTGCACTCTTCGTCCACGCCACAGCACAAAACACAACTGTCGCGGACATCCTTCAATCCAACTACACACCTCCAATTGTCCACTCATTTTTTACACTTAACGGTGTTAAAAACTACGAAGCTACGTCAAAACCAACTCTAGCAATTCAGGTAACGGAGTTAAGTGACGGCATCTTCATTGGCTTCACATGCAACCACGCTGTTGTAGACGCCAAGTCGTTTTGGCATTTCGTTAATTCTTGGTCCCAAATCTCGAAAGGTTCCCATAAAATACCAAAACTCCCTTCATTTCAACGTTGGTTCCCAAACGATATTGAAATTCCAATACGCTTCCCTTTCACACAAATACAATCACAAAACCAAGACTCCTCAGAAGAAAGCTTAGAATCCAATTTAGCTGAAAGAATCTTCCATTTCACAAAGGAGAAAATCGCGGAACTGAAATCAAAAGCAAACGCAGAAGCCGAAACAGATAAATCTAAAATATCTTCGCTTCAAGTACTATTATCTCATGTTTGGCGTTCTGTTGTTCGTTGCAAAAAACACGATCCACAAGAAGATGTTTTCTATGTGTTGATGATAGATGTTAGACCAAGGATGATTCCACCTTTGGAAGAAGATTATTTCGGAAACGCGGTAGTGGTTAATGGTGTGAGGATGAAAGCAGGGGAGGTTCTAGAGTGTGAAATCGGAAAAGTTGCTTTAGAGATAAACAAGATGATTTCATTACATTCTGCTGAGAAAATAAGGAACCATTACGAATCTTGGTTGAGAACACCAACGTTGTTCCGAAGTGGTAGTTCGCTAGGTGGTAATATGTTGGCAATGAGCAGTTCTCCGAGATTTGATGTTTTTGGCAATGATTTTGGTTGGGGAAAGCCTGTGGCGTTTCGAAGTGGGAGTGGTAATAAAAATAATGGAAAAATTAGTGTGTTTGCTGGTGCTGAAGAAGGTAGTATAGATGTTGAAATGTGTCTTTCTTATGAGATTTTGGAGGCTTTGGGAAATGATGTTGAGTTCTTGGTTCCTAGTTCTAAGTAA
Protein sequence

>MS.gene56795.t1

MDSIKVTELSDGIFIGFTCNHAVVDAKSFWHFVNSWSQISKGSHKIPKLPSFQRWFPNDIEIPIRFPFTQIQSQNQDSSEESLESNLAERIFHFTKEKIAELKSKANAEAETDKSKISSLQVLLSHVWRSVVRCKKHDPQEDVFYVLMIDVRPRMIPPLEEDYFGNAVVVNGVRMKAGEVLECEIGKVALEINKMISLHSAEKIRNHYESWLRTPTLFRSGSSLGGNMLAMSSSPRFDVFGNDFGWGKPVAFRSGSGNKNNGKISVFAGAEEGSIDVEMCLSYEILEALGNDVEFLVPSSK