AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene011837

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011837.t1 MTR_4g094828 89.868 454 43 3 1 454 1 451 0.0 840
MS.gene011837.t1 MTR_4g022290 83.850 452 63 2 1 451 1 443 0.0 774
MS.gene011837.t1 MTR_8g079710 74.172 453 101 8 1 449 1 441 0.0 661
MS.gene011837.t1 MTR_4g094835 54.084 453 185 11 1 445 1 438 8.16e-167 477
MS.gene011837.t1 MTR_4g094842 53.392 457 184 8 1 445 1 440 3.72e-160 460
MS.gene011837.t1 MTR_0190s0020 49.672 457 211 6 1 453 1 442 8.57e-151 436
MS.gene011837.t1 MTR_3g088420 50.766 457 197 11 1 453 1 433 1.06e-149 433
MS.gene011837.t1 MTR_4g022800 50.431 464 197 13 1 453 1 442 3.75e-147 427
MS.gene011837.t1 MTR_4g022825 50.545 459 200 12 1 452 1 439 1.59e-146 425
MS.gene011837.t1 MTR_8g041770 49.563 458 209 8 1 453 1 441 1.88e-146 425
MS.gene011837.t1 MTR_4g094838 50.552 453 180 12 6 445 3 424 2.94e-146 424
MS.gene011837.t1 MTR_3g026310 50.000 468 199 11 1 453 1 448 5.25e-146 424
MS.gene011837.t1 MTR_4g022720 50.000 458 201 13 1 453 1 435 1.46e-145 422
MS.gene011837.t1 MTR_7g026860 49.567 462 200 13 1 453 1 438 2.40e-142 414
MS.gene011837.t1 MTR_4g022670 49.675 461 204 12 1 453 1 441 8.05e-142 413
MS.gene011837.t1 MTR_4g094832 54.712 382 147 9 74 445 57 422 3.23e-137 401
MS.gene011837.t1 MTR_4g022760 43.478 460 190 10 1 453 1 397 9.64e-116 345
MS.gene011837.t1 MTR_6g016815 41.978 455 174 10 1 453 15 381 4.83e-105 317
MS.gene011837.t1 MTR_3g101900 36.986 438 245 12 30 454 30 449 6.35e-81 257
MS.gene011837.t1 MTR_3g101930 37.188 441 237 13 26 445 26 447 4.75e-80 255
MS.gene011837.t1 MTR_3g102020 36.617 467 256 15 6 454 8 452 4.45e-78 250
MS.gene011837.t1 MTR_3g102010 36.404 445 249 13 26 454 26 452 2.85e-77 248
MS.gene011837.t1 MTR_3g101960 35.991 439 245 12 24 445 23 442 3.33e-75 243
MS.gene011837.t1 MTR_3g101970 35.268 448 241 13 24 454 23 438 5.43e-75 241
MS.gene011837.t1 MTR_8g040760 51.835 218 96 4 1 213 1 214 4.19e-68 216
MS.gene011837.t1 MTR_5g081960 32.854 487 264 15 6 445 8 478 6.29e-66 219
MS.gene011837.t1 MTR_4g094825 55.670 194 78 5 16 203 78 269 1.99e-63 210
MS.gene011837.t1 MTR_4g094825 50.000 146 59 4 301 445 251 383 2.28e-36 138
MS.gene011837.t1 MTR_3g070170 31.818 462 265 12 20 449 23 466 3.78e-61 206
MS.gene011837.t1 MTR_4g015180 30.339 501 276 13 8 453 5 487 1.90e-56 194
MS.gene011837.t1 MTR_7g026850 58.553 152 61 2 35 185 12 162 6.84e-56 184
MS.gene011837.t1 MTR_8g040780 44.749 219 106 7 231 445 17 224 1.80e-49 169
MS.gene011837.t1 MTR_6g034495 63.793 116 40 1 71 184 45 160 1.01e-44 154
MS.gene011837.t1 MTR_3g102030 33.046 348 177 13 71 406 17 320 5.27e-43 154
MS.gene011837.t1 MTR_6g045553 27.527 465 276 12 20 445 25 467 1.74e-39 148
MS.gene011837.t1 MTR_7g026770 40.526 190 81 4 147 336 132 289 2.05e-34 130
MS.gene011837.t1 MTR_7g026830 64.634 82 29 0 90 171 16 97 3.29e-31 115
MS.gene011837.t1 MTR_6g034485 40.288 139 69 3 192 330 1 125 3.65e-27 105
MS.gene011837.t1 MTR_8g075610 25.253 396 256 16 60 443 47 414 2.87e-26 110
MS.gene011837.t1 MTR_4g007540 26.634 413 265 17 47 444 39 428 3.04e-25 107
MS.gene011837.t1 MTR_2g105330 26.150 413 264 16 47 443 39 426 5.86e-25 107
MS.gene011837.t1 MTR_2g064495 26.150 413 264 16 47 443 39 426 6.76e-25 106
MS.gene011837.t1 MTR_7g085930 25.182 413 265 13 50 432 49 447 3.17e-21 96.3
MS.gene011837.t1 MTR_3g049150 24.645 422 262 17 47 438 38 433 3.48e-21 96.3
MS.gene011837.t1 MTR_8g096530 26.496 351 222 13 60 401 59 382 4.27e-21 95.9
MS.gene011837.t1 MTR_3g098980 24.642 349 234 10 60 403 66 390 1.98e-20 93.6
MS.gene011837.t1 MTR_1g040175 24.317 366 245 12 46 402 45 387 6.13e-20 92.4
MS.gene011837.t1 MTR_7g085990 23.798 416 285 11 50 443 45 450 1.42e-19 91.3
MS.gene011837.t1 MTR_7g027175 25.124 402 268 14 50 444 58 433 2.71e-19 90.1
MS.gene011837.t1 MTR_5g026320 26.000 450 260 20 27 445 38 445 2.84e-19 90.5
MS.gene011837.t1 MTR_3g087640 25.602 457 264 17 35 440 31 462 1.45e-18 88.2
MS.gene011837.t1 MTR_7g014200 23.644 461 274 16 28 440 28 458 8.47e-18 85.9
MS.gene011837.t1 MTR_2g089765 23.059 425 251 16 27 401 36 434 2.03e-17 84.7
MS.gene011837.t1 MTR_7g014330 25.436 401 261 13 30 405 26 413 3.97e-17 84.0
MS.gene011837.t1 MTR_4g097090 24.648 426 253 18 47 434 45 440 9.86e-17 82.4
MS.gene011837.t1 MTR_8g012750 25.000 416 255 17 27 401 23 422 1.32e-16 82.4
MS.gene011837.t1 MTR_6g015815 24.460 417 242 16 28 404 32 415 3.91e-16 80.9
MS.gene011837.t1 MTR_6g015315 23.559 399 256 15 34 404 30 407 1.13e-15 79.3
MS.gene011837.t1 MTR_7g014250 24.938 401 255 14 34 405 30 413 1.55e-15 79.0
MS.gene011837.t1 MTR_7g014160 24.612 451 269 18 30 434 30 455 1.97e-15 78.6
MS.gene011837.t1 MTR_7g014610 22.912 467 276 18 33 444 32 469 1.98e-15 78.6
MS.gene011837.t1 MTR_4g127650 24.257 404 248 19 60 434 66 440 2.17e-15 78.6
MS.gene011837.t1 MTR_6g015850 24.069 403 258 13 28 404 32 412 2.53e-15 78.2
MS.gene011837.t1 MTR_6g015320 22.222 423 262 15 25 404 11 409 3.14e-15 77.8
MS.gene011837.t1 MTR_5g090810 23.077 403 246 13 38 402 36 412 1.45e-14 75.9
MS.gene011837.t1 MTR_5g090880 23.529 374 229 11 60 402 67 414 2.31e-14 75.5
MS.gene011837.t1 MTR_6g015830 24.566 403 255 13 30 404 34 415 3.47e-14 74.7
MS.gene011837.t1 MTR_3g112180 22.967 418 288 13 34 443 38 429 4.90e-14 74.3
MS.gene011837.t1 MTR_2g089670 24.936 393 241 18 42 401 58 429 8.73e-14 73.6
MS.gene011837.t1 MTR_5g090830 23.573 403 244 14 38 402 36 412 2.02e-13 72.4
MS.gene011837.t1 MTR_7g026780 40.708 113 40 5 341 453 26 111 2.07e-13 67.0
MS.gene011837.t1 MTR_7g014230 24.324 407 262 13 28 405 26 415 2.64e-13 72.0
MS.gene011837.t1 MTR_7g114490 23.624 436 283 16 32 443 25 434 4.65e-13 71.2
MS.gene011837.t1 MTR_6g053810 26.861 309 202 12 60 361 71 362 2.39e-12 68.9
MS.gene011837.t1 MTR_7g013850 21.162 482 286 17 33 450 32 483 2.61e-12 68.9
MS.gene011837.t1 MTR_1g040315 28.421 190 113 5 32 206 24 205 3.39e-12 68.6
MS.gene011837.t1 MTR_7g114520 23.797 374 247 16 50 409 53 402 3.89e-12 68.6
MS.gene011837.t1 MTR_8g079980 24.543 383 248 16 53 426 52 402 4.64e-12 68.2
MS.gene011837.t1 MTR_2g089650 23.333 420 272 17 43 430 42 443 7.56e-12 67.4
MS.gene011837.t1 MTR_7g014620 22.122 443 264 16 30 434 15 414 2.10e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene011837.t1 AT5G67150 39.341 455 244 13 4 446 5 439 4.27e-95 294
MS.gene011837.t1 AT3G50300 38.972 467 240 14 1 444 1 445 5.54e-89 278
MS.gene011837.t1 AT3G50270 36.933 463 265 13 2 454 4 449 8.09e-87 273
MS.gene011837.t1 AT5G67160 38.173 427 230 12 26 445 25 424 8.99e-86 270
MS.gene011837.t1 AT3G50280 34.945 455 266 11 1 445 1 435 5.57e-81 257
MS.gene011837.t1 AT5G38130 36.854 445 247 12 1 434 21 442 2.64e-80 256
MS.gene011837.t1 AT5G42830 34.852 439 254 12 30 454 30 450 1.14e-75 244
MS.gene011837.t1 AT5G07860 35.981 428 245 10 30 445 31 441 3.01e-71 233
MS.gene011837.t1 AT5G07850 34.091 440 257 12 30 453 31 453 2.24e-69 228
MS.gene011837.t1 AT5G07870 35.874 446 249 13 30 453 31 461 1.10e-66 221
MS.gene011837.t1 AT2G39980 31.161 491 276 12 8 453 7 480 1.31e-65 218
MS.gene011837.t1 AT5G01210 32.035 462 261 12 20 445 17 461 3.62e-63 212
MS.gene011837.t1 AT3G50280 35.110 319 189 7 131 445 1 305 3.27e-56 189
MS.gene011837.t1 AT3G50290 38.434 281 155 7 125 399 1 269 4.68e-50 171
MS.gene011837.t1 AT5G23940 30.853 457 280 12 4 442 3 441 2.22e-47 170
MS.gene011837.t1 AT5G41040 26.667 405 250 16 60 449 69 441 2.44e-25 108
MS.gene011837.t1 AT5G41040 26.667 405 250 16 60 449 85 457 2.57e-25 108
MS.gene011837.t1 AT3G48720 26.366 421 261 17 40 443 37 425 3.00e-24 105
MS.gene011837.t1 AT5G48930 26.456 412 247 18 47 434 39 418 3.18e-24 104
MS.gene011837.t1 AT5G63560 24.359 390 244 13 60 435 61 413 5.84e-22 98.2
MS.gene011837.t1 AT2G19070 26.457 446 272 21 30 444 25 445 8.59e-20 92.0
MS.gene011837.t1 AT3G29590 23.653 427 298 12 28 440 26 438 1.16e-18 88.6
MS.gene011837.t1 AT1G78990 25.543 368 233 14 49 402 56 396 1.02e-17 85.5
MS.gene011837.t1 AT5G47950 25.750 400 238 14 56 443 57 409 1.34e-16 82.0
MS.gene011837.t1 AT5G39080 25.061 407 259 18 28 404 26 416 8.88e-16 79.7
MS.gene011837.t1 AT3G26040 26.024 415 240 14 54 446 53 422 1.34e-14 75.9
MS.gene011837.t1 AT5G23970 24.408 422 251 17 46 445 38 413 1.72e-14 75.5
MS.gene011837.t1 AT5G16410 23.750 400 247 16 25 402 56 419 6.04e-14 74.3
MS.gene011837.t1 AT2G40230 24.451 364 239 12 52 404 51 389 9.96e-14 73.2
MS.gene011837.t1 AT3G03480 25.127 394 242 16 32 402 34 397 1.17e-13 73.2
MS.gene011837.t1 AT1G24420 26.286 350 198 18 71 404 76 381 2.87e-13 72.0
MS.gene011837.t1 AT1G24420 26.286 350 198 18 71 404 76 381 2.87e-13 72.0
MS.gene011837.t1 AT5G47980 24.286 420 236 17 59 446 60 429 6.20e-12 67.8
MS.gene011837.t1 AT5G61160 21.836 403 267 13 27 402 22 403 7.67e-12 67.4
MS.gene011837.t1 AT1G28680 23.269 361 222 14 63 404 65 389 1.26e-11 67.0
MS.gene011837.t1 AT5G39090 25.635 394 249 19 30 401 28 399 2.63e-11 65.9

Find 90 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATGGGAGGAACATATTT+TGG 0.185023 8.1:+27438121 None:intergenic
TTGTCTTCCTTATGATATTT+TGG 0.223517 8.1:-27437177 MS.gene011837:CDS
TCAAAAGCTAATGCAGAAAT+TGG 0.278916 8.1:-27437728 MS.gene011837:CDS
GTTGGATTTAAAAGAAATAT+TGG 0.317499 8.1:-27437251 MS.gene011837:CDS
GTGTAGACGCCAAATCATTT+TGG 0.321096 8.1:-27437976 MS.gene011837:CDS
ATGGTCGATTTGGTTTGTTT+TGG 0.322357 8.1:+27438318 None:intergenic
AATGCAAGTAGGGAAATTAA+TGG 0.338622 8.1:-27437495 MS.gene011837:CDS
ACACCATTTCTAACTGCAAT+AGG 0.350294 8.1:+27437272 None:intergenic
TATGGAAAAGAAGACCTCTT+TGG 0.356262 8.1:+27438344 None:intergenic
TTTGGCATTTCATCAACTCT+TGG 0.368556 8.1:-27437958 MS.gene011837:CDS
TTGGCATTTCATCAACTCTT+GGG 0.376104 8.1:-27437957 MS.gene011837:CDS
ATGGAACATGAGGCGTTGTT+AGG 0.379377 8.1:+27438217 None:intergenic
TTTGTTTAAGATGGTCGATT+TGG 0.383044 8.1:+27438308 None:intergenic
GTTGAAAACCCCGTCTATAT+CGG 0.384392 8.1:-27437381 MS.gene011837:CDS
AGGAAAGTGTTTGTTTAAGA+TGG 0.385071 8.1:+27438299 None:intergenic
TCACCACGGTTCAATTATTA+CGG 0.389485 8.1:-27437317 MS.gene011837:CDS
ATGGGACGATTAATGTTGTT+TGG 0.400321 8.1:+27437875 None:intergenic
TCGTGTTACCCGTAGATTGT+AGG 0.401751 8.1:-27437586 MS.gene011837:CDS
TTACGGTAATGACTTTGGTT+GGG 0.403096 8.1:-27437300 MS.gene011837:CDS
TTAATCGACGGTATCTTCAT+TGG 0.408333 8.1:-27438019 MS.gene011837:CDS
GGAAGTGGAATCGGAGCAAC+TGG 0.414902 8.1:-27437527 MS.gene011837:CDS
GATGAAATGCCAAAATGATT+TGG 0.418439 8.1:+27437967 None:intergenic
AATTATTACGGTAATGACTT+TGG 0.438421 8.1:-27437305 MS.gene011837:CDS
CTTTGTGAAAGGAAACTGTA+TGG 0.444172 8.1:+27437856 None:intergenic
ACCAACATTGTTACAAATGA+TGG 0.444223 8.1:+27438198 None:intergenic
ATTACGGTAATGACTTTGGT+TGG 0.453916 8.1:-27437301 MS.gene011837:CDS
CATTCTTGTCCTACAATCTA+CGG 0.463033 8.1:+27437577 None:intergenic
TACGGTAATGACTTTGGTTG+GGG 0.464169 8.1:-27437299 MS.gene011837:CDS
ATCAAAATCTCATCATGAAA+AGG 0.465218 8.1:-27437426 MS.gene011837:CDS
GGAAACCAACGTTCGAAAGA+AGG 0.465248 8.1:+27437896 None:intergenic
TCGAATCTTCCACTTTACTA+AGG 0.472625 8.1:-27437771 MS.gene011837:CDS
TAAGAATAATGAGGAAACAA+TGG 0.476169 8.1:+27438105 None:intergenic
AAGCCTATTGCAGTTAGAAA+TGG 0.478020 8.1:-27437275 MS.gene011837:CDS
ACGAAAGCAGACCTTTCTTC+TGG 0.482415 8.1:+27437605 None:intergenic
ATAGCCTCCAAAATATCATA+AGG 0.495132 8.1:+27437170 None:intergenic
GTAGGGAAATTAATGGAAAG+TGG 0.496846 8.1:-27437488 MS.gene011837:CDS
AAGAATAATGAGGAAACAAT+GGG 0.502029 8.1:+27438106 None:intergenic
GGTAGAGTTATTGTGCTTGG+TGG 0.507052 8.1:-27437230 MS.gene011837:CDS
GAATTTGTTCCTTAGTAAAG+TGG 0.513443 8.1:+27437762 None:intergenic
GATATGTAATAATGCAAGTA+GGG 0.513879 8.1:-27437505 MS.gene011837:CDS
AAATTAATGGAAAGTGGGAT+TGG 0.520728 8.1:-27437482 MS.gene011837:CDS
TACCTGGTTCCGATATAGAC+GGG 0.523820 8.1:+27437372 None:intergenic
AAAAGAAGACCTCTTTGGAT+TGG 0.524816 8.1:+27438349 None:intergenic
AAATCCCTTCTTTCGAACGT+TGG 0.525283 8.1:-27437901 MS.gene011837:CDS
AACTTCTTTCCACCACTCGC+TGG 0.525452 8.1:-27438268 MS.gene011837:CDS
TACTTATAATTAAACGCCAA+AGG 0.529613 8.1:+27437642 None:intergenic
TAGTGAGTAATTATGAGTCT+TGG 0.531485 8.1:-27437403 MS.gene011837:CDS
ATTGGTAGAGTTATTGTGCT+TGG 0.531528 8.1:-27437233 MS.gene011837:CDS
GGATATGTAATAATGCAAGT+AGG 0.531741 8.1:-27437506 MS.gene011837:CDS
TTAAGATATTTGAGATCCCA+TGG 0.532987 8.1:+27438379 None:intergenic
TAGGGAAATTAATGGAAAGT+GGG 0.533012 8.1:-27437487 MS.gene011837:CDS
AAAATCTTACACCAGAAGAA+AGG 0.535334 8.1:-27437616 MS.gene011837:CDS
GAAACCAACGTTCGAAAGAA+GGG 0.538266 8.1:+27437897 None:intergenic
ATTGCAGTTAGAAATGGTGT+TGG 0.538305 8.1:-27437269 MS.gene011837:CDS
AATTCACTCAACCCCATGGC+AGG 0.541939 8.1:-27438487 None:intergenic
ATAAGTAGAATGCCTGCCAT+GGG 0.546907 8.1:+27438475 None:intergenic
AATTATCGATTTAGCACCAT+GGG 0.552815 8.1:-27438395 MS.gene011837:CDS
GTTACTTGTACTGCAAGTAA+TGG 0.555096 8.1:+27438046 None:intergenic
CATACAGTTTCCTTTCACAA+AGG 0.556469 8.1:-27437855 MS.gene011837:CDS
TCCATCATTTGTAACAATGT+TGG 0.559522 8.1:-27438199 MS.gene011837:CDS
TGGTGGAAAGAAGTTTAGAG+TGG 0.560375 8.1:+27438276 None:intergenic
GATAAGTAGAATGCCTGCCA+TGG 0.564667 8.1:+27438474 None:intergenic
TTAGACAGTCATAGCATCCA+TGG 0.565505 8.1:+27437130 None:intergenic
TGGGATTGGTAAAATTGCAA+TGG 0.567200 8.1:-27437468 MS.gene011837:CDS
ATTCTTGTCCTACAATCTAC+GGG 0.570480 8.1:+27437578 None:intergenic
AACGAAGTGCAAAACTATGA+AGG 0.575652 8.1:-27438079 MS.gene011837:CDS
GTGCTTGGTGGTGCAGAAGA+AGG 0.576706 8.1:-27437218 MS.gene011837:CDS
TTCGTTGAGTAAGAATAATG+AGG 0.583239 8.1:+27438096 None:intergenic
CTACCTGGTTCCGATATAGA+CGG 0.584378 8.1:+27437371 None:intergenic
TTTGTGAAAGGAAACTGTAT+GGG 0.590779 8.1:+27437857 None:intergenic
ACAATCCAAGCAACAAAACA+TGG 0.591460 8.1:-27438442 MS.gene011837:CDS
AATGCTAGTGCTTTCTGCTG+TGG 0.598267 8.1:+27438159 None:intergenic
TGGAAAGAAGTTTAGAGTGG+AGG 0.603624 8.1:+27438279 None:intergenic
AAATTACTTGATGATCTACC+TGG 0.604805 8.1:+27437356 None:intergenic
GGAAAATGATCATCTGTCCA+TGG 0.608138 8.1:-27437147 MS.gene011837:CDS
AAACTTGCACCAATCCAAAG+AGG 0.608686 8.1:-27438358 MS.gene011837:CDS
ACCCCGTCTATATCGGAACC+AGG 0.621903 8.1:-27437374 MS.gene011837:CDS
TCTTGGGCTGAAATCGCACA+AGG 0.627018 8.1:-27437941 MS.gene011837:CDS
ACAAGACGACCAGCGAGTGG+TGG 0.630223 8.1:+27438259 None:intergenic
GTTACAAATGATGGAACATG+AGG 0.636643 8.1:+27438207 None:intergenic
AATTGCAATGGAAATGAACA+AGG 0.638167 8.1:-27437456 MS.gene011837:CDS
AAATTATCGATTTAGCACCA+TGG 0.647404 8.1:-27438396 MS.gene011837:CDS
TAGTGCTTTCTGCTGTGGCG+TGG 0.650322 8.1:+27438164 None:intergenic
ATTTGGCGTCTACACCCACA+TGG 0.667304 8.1:+27437984 None:intergenic
CAAGTAACAGAGTTAATCGA+CGG 0.676652 8.1:-27438031 MS.gene011837:CDS
ACCTGGTTCCGATATAGACG+GGG 0.680926 8.1:+27437373 None:intergenic
ATTACAAGACGACCAGCGAG+TGG 0.695572 8.1:+27438256 None:intergenic
AATAATGAGGAAACAATGGG+AGG 0.699124 8.1:+27438109 None:intergenic
TGATAGCAAGCAGTTCACCA+CGG 0.707603 8.1:-27437331 MS.gene011837:CDS
TTACCGTAATAATTGAACCG+TGG 0.738497 8.1:+27437314 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTCTCTTCTAACTT+TGG + chr8.1:27438054-27438073 None:intergenic 20.0%
!! GTTGGATTTAAAAGAAATAT+TGG - chr8.1:27438351-27438370 MS.gene011837:CDS 20.0%
!!! AAGTTAGAAGAGAATTTTTT+TGG - chr8.1:27438054-27438073 MS.gene011837:CDS 20.0%
! AAGAATAATGAGGAAACAAT+GGG + chr8.1:27437499-27437518 None:intergenic 25.0%
! AATTATTACGGTAATGACTT+TGG - chr8.1:27438297-27438316 MS.gene011837:CDS 25.0%
! ATCAAAATCTCATCATGAAA+AGG - chr8.1:27438176-27438195 MS.gene011837:CDS 25.0%
! GATATGTAATAATGCAAGTA+GGG - chr8.1:27438097-27438116 MS.gene011837:CDS 25.0%
! TAAGAATAATGAGGAAACAA+TGG + chr8.1:27437500-27437519 None:intergenic 25.0%
! TACTTATAATTAAACGCCAA+AGG + chr8.1:27437963-27437982 None:intergenic 25.0%
!! TTGTCTTCCTTATGATATTT+TGG - chr8.1:27438425-27438444 MS.gene011837:CDS 25.0%
!!! AATTTTTTTGGAAGTGGAAT+CGG - chr8.1:27438066-27438085 MS.gene011837:CDS 25.0%
AAAATCTTACACCAGAAGAA+AGG - chr8.1:27437986-27438005 MS.gene011837:CDS 30.0%
AAATTAATGGAAAGTGGGAT+TGG - chr8.1:27438120-27438139 MS.gene011837:CDS 30.0%
AATGCAAGTAGGGAAATTAA+TGG - chr8.1:27438107-27438126 MS.gene011837:CDS 30.0%
AATTGCAATGGAAATGAACA+AGG - chr8.1:27438146-27438165 MS.gene011837:CDS 30.0%
ACCAACATTGTTACAAATGA+TGG + chr8.1:27437407-27437426 None:intergenic 30.0%
ATAGCCTCCAAAATATCATA+AGG + chr8.1:27438435-27438454 None:intergenic 30.0%
GATGAAATGCCAAAATGATT+TGG + chr8.1:27437638-27437657 None:intergenic 30.0%
GGATATGTAATAATGCAAGT+AGG - chr8.1:27438096-27438115 MS.gene011837:CDS 30.0%
TAGGGAAATTAATGGAAAGT+GGG - chr8.1:27438115-27438134 MS.gene011837:CDS 30.0%
TAGTGAGTAATTATGAGTCT+TGG - chr8.1:27438199-27438218 MS.gene011837:CDS 30.0%
TCAAAAGCTAATGCAGAAAT+TGG - chr8.1:27437874-27437893 MS.gene011837:CDS 30.0%
TCCATCATTTGTAACAATGT+TGG - chr8.1:27437403-27437422 MS.gene011837:CDS 30.0%
TTCGTTGAGTAAGAATAATG+AGG + chr8.1:27437509-27437528 None:intergenic 30.0%
TTTGTGAAAGGAAACTGTAT+GGG + chr8.1:27437748-27437767 None:intergenic 30.0%
! AAATTACTTGATGATCTACC+TGG + chr8.1:27438249-27438268 None:intergenic 30.0%
! GAATTTGTTCCTTAGTAAAG+TGG + chr8.1:27437843-27437862 None:intergenic 30.0%
! TTAAGATATTTGAGATCCCA+TGG + chr8.1:27437226-27437245 None:intergenic 30.0%
! TTTGTTTAAGATGGTCGATT+TGG + chr8.1:27437297-27437316 None:intergenic 30.0%
! TTTTGTGCTTCATTTGTGAA+AGG + chr8.1:27437787-27437806 None:intergenic 30.0%
!! AAATTATCGATTTAGCACCA+TGG - chr8.1:27437206-27437225 MS.gene011837:CDS 30.0%
!! AATTATCGATTTAGCACCAT+GGG - chr8.1:27437207-27437226 MS.gene011837:CDS 30.0%
!! AGGAAAGTGTTTGTTTAAGA+TGG + chr8.1:27437306-27437325 None:intergenic 30.0%
!! TCTTCCTTATGATATTTTGG+AGG - chr8.1:27438428-27438447 MS.gene011837:CDS 30.0%
!! TTATGATATTTTGGAGGCTA+TGG - chr8.1:27438434-27438453 MS.gene011837:CDS 30.0%
!!! GAAGAGAATTTTTTTGGAAG+TGG - chr8.1:27438060-27438079 MS.gene011837:CDS 30.0%
!!! TTTGGTTTGTTTTGGGTTTA+TGG + chr8.1:27437279-27437298 None:intergenic 30.0%
AAAAGAAGACCTCTTTGGAT+TGG + chr8.1:27437256-27437275 None:intergenic 35.0%
AACGAAGTGCAAAACTATGA+AGG - chr8.1:27437523-27437542 MS.gene011837:CDS 35.0%
AAGCCTATTGCAGTTAGAAA+TGG - chr8.1:27438327-27438346 MS.gene011837:CDS 35.0%
AATAATGAGGAAACAATGGG+AGG + chr8.1:27437496-27437515 None:intergenic 35.0%
ACAATCCAAGCAACAAAACA+TGG - chr8.1:27437160-27437179 MS.gene011837:CDS 35.0%
ACACCATTTCTAACTGCAAT+AGG + chr8.1:27438333-27438352 None:intergenic 35.0%
ATGGGACGATTAATGTTGTT+TGG + chr8.1:27437730-27437749 None:intergenic 35.0%
ATTACGGTAATGACTTTGGT+TGG - chr8.1:27438301-27438320 MS.gene011837:CDS 35.0%
ATTCTTGTCCTACAATCTAC+GGG + chr8.1:27438027-27438046 None:intergenic 35.0%
ATTGCAGTTAGAAATGGTGT+TGG - chr8.1:27438333-27438352 MS.gene011837:CDS 35.0%
ATTGGTAGAGTTATTGTGCT+TGG - chr8.1:27438369-27438388 MS.gene011837:CDS 35.0%
CAAGTAACAGAGTTAATCGA+CGG - chr8.1:27437571-27437590 MS.gene011837:CDS 35.0%
CATACAGTTTCCTTTCACAA+AGG - chr8.1:27437747-27437766 MS.gene011837:CDS 35.0%
CATTCTTGTCCTACAATCTA+CGG + chr8.1:27438028-27438047 None:intergenic 35.0%
CTTTGTGAAAGGAAACTGTA+TGG + chr8.1:27437749-27437768 None:intergenic 35.0%
GTAGGGAAATTAATGGAAAG+TGG - chr8.1:27438114-27438133 MS.gene011837:CDS 35.0%
GTTACTTGTACTGCAAGTAA+TGG + chr8.1:27437559-27437578 None:intergenic 35.0%
TATGGAAAAGAAGACCTCTT+TGG + chr8.1:27437261-27437280 None:intergenic 35.0%
TCACCACGGTTCAATTATTA+CGG - chr8.1:27438285-27438304 MS.gene011837:CDS 35.0%
TCGAATCTTCCACTTTACTA+AGG - chr8.1:27437831-27437850 MS.gene011837:CDS 35.0%
TTAATCGACGGTATCTTCAT+TGG - chr8.1:27437583-27437602 MS.gene011837:CDS 35.0%
TTACCGTAATAATTGAACCG+TGG + chr8.1:27438291-27438310 None:intergenic 35.0%
TTACGGTAATGACTTTGGTT+GGG - chr8.1:27438302-27438321 MS.gene011837:CDS 35.0%
TTGGCATTTCATCAACTCTT+GGG - chr8.1:27437645-27437664 MS.gene011837:CDS 35.0%
TTTGGCATTTCATCAACTCT+TGG - chr8.1:27437644-27437663 MS.gene011837:CDS 35.0%
! ACAATGGGAGGAACATATTT+TGG + chr8.1:27437484-27437503 None:intergenic 35.0%
! GGTTTTGCAATTAACCATGT+GGG - chr8.1:27437604-27437623 MS.gene011837:CDS 35.0%
! GTTACAAATGATGGAACATG+AGG + chr8.1:27437398-27437417 None:intergenic 35.0%
! TCGAAAGAAGGGATTTTTGT+TGG + chr8.1:27437697-27437716 None:intergenic 35.0%
! TGGGATTGGTAAAATTGCAA+TGG - chr8.1:27438134-27438153 MS.gene011837:CDS 35.0%
! TTTTGTGCTTCCTTTGTGAA+AGG + chr8.1:27437760-27437779 None:intergenic 35.0%
!! AAGCACTTTTAAGTCACCTT+TGG - chr8.1:27437944-27437963 MS.gene011837:CDS 35.0%
!! TGGTTTTGCAATTAACCATG+TGG - chr8.1:27437603-27437622 MS.gene011837:CDS 35.0%
!!! ATGGTCGATTTGGTTTGTTT+TGG + chr8.1:27437287-27437306 None:intergenic 35.0%
!!! GAGGAACATATTTTGGTTGA+AGG + chr8.1:27437477-27437496 None:intergenic 35.0%
!!! TGGTCGATTTGGTTTGTTTT+GGG + chr8.1:27437286-27437305 None:intergenic 35.0%
AAACTTGCACCAATCCAAAG+AGG - chr8.1:27437244-27437263 MS.gene011837:CDS 40.0%
AAATCCCTTCTTTCGAACGT+TGG - chr8.1:27437701-27437720 MS.gene011837:CDS 40.0%
GAAACCAACGTTCGAAAGAA+GGG + chr8.1:27437708-27437727 None:intergenic 40.0%
GGAAAATGATCATCTGTCCA+TGG - chr8.1:27438455-27438474 MS.gene011837:CDS 40.0%
GTTGAAAACCCCGTCTATAT+CGG - chr8.1:27438221-27438240 MS.gene011837:CDS 40.0%
TACGGTAATGACTTTGGTTG+GGG - chr8.1:27438303-27438322 MS.gene011837:CDS 40.0%
TGGTGGAAAGAAGTTTAGAG+TGG + chr8.1:27437329-27437348 None:intergenic 40.0%
TTAGACAGTCATAGCATCCA+TGG + chr8.1:27438475-27438494 None:intergenic 40.0%
! GTGTAGACGCCAAATCATTT+TGG - chr8.1:27437626-27437645 MS.gene011837:CDS 40.0%
! TGGAAAGAAGTTTAGAGTGG+AGG + chr8.1:27437326-27437345 None:intergenic 40.0%
!! CATCACCATGTTTTGTTGCT+TGG + chr8.1:27437168-27437187 None:intergenic 40.0%
AATGCTAGTGCTTTCTGCTG+TGG + chr8.1:27437446-27437465 None:intergenic 45.0%
ACGAAAGCAGACCTTTCTTC+TGG + chr8.1:27438000-27438019 None:intergenic 45.0%
CTACCTGGTTCCGATATAGA+CGG + chr8.1:27438234-27438253 None:intergenic 45.0%
GGAAACCAACGTTCGAAAGA+AGG + chr8.1:27437709-27437728 None:intergenic 45.0%
GGTAGAGTTATTGTGCTTGG+TGG - chr8.1:27438372-27438391 MS.gene011837:CDS 45.0%
TACCTGGTTCCGATATAGAC+GGG + chr8.1:27438233-27438252 None:intergenic 45.0%
TCGTGTTACCCGTAGATTGT+AGG - chr8.1:27438016-27438035 MS.gene011837:CDS 45.0%
TGATAGCAAGCAGTTCACCA+CGG - chr8.1:27438271-27438290 MS.gene011837:CDS 45.0%
!! ATGGAACATGAGGCGTTGTT+AGG + chr8.1:27437388-27437407 None:intergenic 45.0%
AACTTCTTTCCACCACTCGC+TGG - chr8.1:27437334-27437353 MS.gene011837:CDS 50.0%
ACCTGGTTCCGATATAGACG+GGG + chr8.1:27438232-27438251 None:intergenic 50.0%
ATTACAAGACGACCAGCGAG+TGG + chr8.1:27437349-27437368 None:intergenic 50.0%
ATTTGGCGTCTACACCCACA+TGG + chr8.1:27437621-27437640 None:intergenic 50.0%
TCTTGGGCTGAAATCGCACA+AGG - chr8.1:27437661-27437680 MS.gene011837:CDS 50.0%
ACCCCGTCTATATCGGAACC+AGG - chr8.1:27438228-27438247 MS.gene011837:CDS 55.0%
GGAAGTGGAATCGGAGCAAC+TGG - chr8.1:27438075-27438094 MS.gene011837:CDS 55.0%
TAGTGCTTTCTGCTGTGGCG+TGG + chr8.1:27437441-27437460 None:intergenic 55.0%
!! GTGCTTGGTGGTGCAGAAGA+AGG - chr8.1:27438384-27438403 MS.gene011837:CDS 55.0%
ACAAGACGACCAGCGAGTGG+TGG + chr8.1:27437346-27437365 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 27437130 27438494 27437130 ID=MS.gene011837
chr8.1 mRNA 27437130 27438494 27437130 ID=MS.gene011837.t1;Parent=MS.gene011837
chr8.1 exon 27437130 27438494 27437130 ID=MS.gene011837.t1.exon1;Parent=MS.gene011837.t1
chr8.1 CDS 27437130 27438494 27437130 ID=cds.MS.gene011837.t1;Parent=MS.gene011837.t1
Gene Sequence

>MS.gene011837

ATGGCAGGCATTCTACTTATCTCAACTACTACAATCCAAGCAACAAAACATGGTGATGATGAAAACTCAACTCACAAAATTATCGATTTAGCACCATGGGATCTCAAATATCTTAAACTTGCACCAATCCAAAGAGGTCTTCTTTTCCATAAACCCAAAACAAACCAAATCGACCATCTTAAACAAACACTTTCCTCCACTCTAAACTTCTTTCCACCACTCGCTGGTCGTCTTGTAATAACACAACACGACGAACCTAACAACGCCTCATGTTCCATCATTTGTAACAATGTTGGTGCATTGTTTGTCCACGCCACAGCAGAAAGCACTAGCATTGTTGACATCCTTCAACCAAAATATGTTCCTCCCATTGTTTCCTCATTATTCTTACTCAACGAAGTGCAAAACTATGAAGGCACATCACAACCATTACTTGCAGTACAAGTAACAGAGTTAATCGACGGTATCTTCATTGGTTTTGCAATTAACCATGTGGGTGTAGACGCCAAATCATTTTGGCATTTCATCAACTCTTGGGCTGAAATCGCACAAGGTTTCAATAAGCCAACAAAAATCCCTTCTTTCGAACGTTGGTTTCCAAACAACATTAATCGTCCCATACAGTTTCCTTTCACAAAGGAAGCACAAAAGCAGCCTTTCACAAATGAAGCACAAAATCAACAATGTGAAGTTTCGTCTCATCGAATCTTCCACTTTACTAAGGAACAAATTCTGCAACTCAAATCAAAAGCTAATGCAGAAATTGGTAGTAGTAGTACTAGTAGTGATAAAATAATAACAATATCGTCATTGCAAGCACTTTTAAGTCACCTTTGGCGTTTAATTATAAGTAAACAAAATCTTACACCAGAAGAAAGGTCTGCTTTCGTGTTACCCGTAGATTGTAGGACAAGAATGTGTCCAAAGTTAGAAGAGAATTTTTTTGGAAGTGGAATCGGAGCAACTGGATATGTAATAATGCAAGTAGGGAAATTAATGGAAAGTGGGATTGGTAAAATTGCAATGGAAATGAACAAGGAGATTTCATCAAAATCTCATCATGAAAAGGTAGTGAGTAATTATGAGTCTTGGTTGAAAACCCCGTCTATATCGGAACCAGGTAGATCATCAAGTAATTTGTTGATAGCAAGCAGTTCACCACGGTTCAATTATTACGGTAATGACTTTGGTTGGGGTAAGCCTATTGCAGTTAGAAATGGTGTTGGATTTAAAAGAAATATTGGTAGAGTTATTGTGCTTGGTGGTGCAGAAGAAGGTAGTATTGATATTCAAGTTTGTCTTCCTTATGATATTTTGGAGGCTATGGAAAATGATCATCTGTCCATGGATGCTATGACTGTCTAA
Protein sequence

>MS.gene011837.t1

MAGILLISTTTIQATKHGDDENSTHKIIDLAPWDLKYLKLAPIQRGLLFHKPKTNQIDHLKQTLSSTLNFFPPLAGRLVITQHDEPNNASCSIICNNVGALFVHATAESTSIVDILQPKYVPPIVSSLFLLNEVQNYEGTSQPLLAVQVTELIDGIFIGFAINHVGVDAKSFWHFINSWAEIAQGFNKPTKIPSFERWFPNNINRPIQFPFTKEAQKQPFTNEAQNQQCEVSSHRIFHFTKEQILQLKSKANAEIGSSSTSSDKIITISSLQALLSHLWRLIISKQNLTPEERSAFVLPVDCRTRMCPKLEENFFGSGIGATGYVIMQVGKLMESGIGKIAMEMNKEISSKSHHEKVVSNYESWLKTPSISEPGRSSSNLLIASSSPRFNYYGNDFGWGKPIAVRNGVGFKRNIGRVIVLGGAEEGSIDIQVCLPYDILEAMENDHLSMDAMTV