AlfalfaGEDB | MS.gene049466

M. sativa cultivar XinJiangDaYe / MS.gene049466

KEGG: K20240
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747
PFAM: PF02458.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049466.t1	XP_013460366.1	91.9	469	36	2	1	468	1	468	1.30E-248	868.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049466.t1	O80467	39.7	458	257	9	8	464	11	450	5.4e-78	293.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049466.t1	A0A072UX85	91.9	469	36	2	1	468	1	468	9.4e-249	868.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene066657	MS.gene049466	PPI
MS.gene56798	MS.gene049466	PPI
MS.gene049466	MS.gene87496	PPI
MS.gene049466	MS.gene070019	PPI
MS.gene002544	MS.gene049466	PPI
MS.gene78818	MS.gene049466	PPI
MS.gene000763	MS.gene049466	PPI
MS.gene50379	MS.gene049466	PPI
MS.gene049466	MS.gene56799	PPI
MS.gene38977	MS.gene049466	PPI
MS.gene90492	MS.gene049466	PPI
MS.gene50382	MS.gene049466	PPI
MS.gene049466	MS.gene38702	PPI
MS.gene011837	MS.gene049466	PPI
MS.gene066634	MS.gene049466	PPI
MS.gene95242	MS.gene049466	PPI
MS.gene32936	MS.gene049466	PPI
MS.gene039597	MS.gene049466	PPI
MS.gene049466	MS.gene50384	PPI
MS.gene32938	MS.gene049466	PPI
MS.gene38362	MS.gene049466	PPI
MS.gene004218	MS.gene049466	PPI
MS.gene28251	MS.gene049466	PPI
MS.gene049466	MS.gene012961	PPI
MS.gene011796	MS.gene049466	PPI
MS.gene011801	MS.gene049466	PPI
MS.gene87537	MS.gene049466	PPI
MS.gene000764	MS.gene049466	PPI
MS.gene049466	MS.gene064101	PPI
MS.gene90493	MS.gene049466	PPI
MS.gene90491	MS.gene049466	PPI
MS.gene049466	MS.gene50356	PPI
MS.gene013787	MS.gene049466	PPI
MS.gene049466	MS.gene56797	PPI
MS.gene87532	MS.gene049466	PPI
MS.gene99223	MS.gene049466	PPI
MS.gene46265	MS.gene049466	PPI
MS.gene063868	MS.gene049466	PPI
MS.gene38703	MS.gene049466	PPI
MS.gene066658	MS.gene049466	PPI
MS.gene38363	MS.gene049466	PPI
MS.gene38706	MS.gene049466	PPI
MS.gene049466	MS.gene38359	PPI
MS.gene32934	MS.gene049466	PPI
MS.gene049466	MS.gene016532	PPI
MS.gene049466	MS.gene066701	PPI
MS.gene063865	MS.gene049466	PPI
MS.gene007831	MS.gene049466	PPI
MS.gene99221	MS.gene049466	PPI
MS.gene56796	MS.gene049466	PPI
MS.gene069767	MS.gene049466	PPI
MS.gene049466	MS.gene011799	PPI
MS.gene049466	MS.gene50420	PPI
MS.gene049466	MS.gene38699	PPI
MS.gene049466	MS.gene32933	PPI
MS.gene99222	MS.gene049466	PPI
MS.gene011798	MS.gene049466	PPI
MS.gene032349	MS.gene049466	PPI
MS.gene38704	MS.gene049466	PPI
MS.gene066656	MS.gene049466	PPI
MS.gene049466	MS.gene87536	PPI
MS.gene049466	MS.gene99218	PPI
MS.gene066660	MS.gene049466	PPI
MS.gene049466	MS.gene012959	PPI
MS.gene069321	MS.gene049466	PPI
MS.gene38361	MS.gene049466	PPI
MS.gene03202	MS.gene049466	PPI
MS.gene049466	MS.gene016477	PPI
MS.gene38701	MS.gene049466	PPI
MS.gene049466	MS.gene02573	PPI
MS.gene046246	MS.gene049466	PPI
MS.gene049466	MS.gene87577	PPI
MS.gene38700	MS.gene049466	PPI
MS.gene012960	MS.gene049466	PPI
MS.gene38365	MS.gene049466	PPI
MS.gene50355	MS.gene049466	PPI
MS.gene012965	MS.gene049466	PPI
MS.gene32261	MS.gene049466	PPI
MS.gene012957	MS.gene049466	PPI
MS.gene99219	MS.gene049466	PPI
MS.gene90496	MS.gene049466	PPI
MS.gene049466	MS.gene87191	PPI
MS.gene56795	MS.gene049466	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049466.t1	MTR_3g465880	91.898	469	36	2	1	468	1	468	0.0	892
MS.gene049466.t1	MTR_3g465930	67.797	472	139	8	1	467	1	464	0.0	642
MS.gene049466.t1	MTR_3g465990	66.738	469	145	6	1	467	1	460	0.0	637
MS.gene049466.t1	MTR_3g465910	67.308	468	139	7	1	464	1	458	0.0	635
MS.gene049466.t1	MTR_3g465980	66.738	469	145	6	1	467	1	460	0.0	634
MS.gene049466.t1	MTR_3g465950	68.943	454	124	6	1	452	1	439	0.0	621
MS.gene049466.t1	MTR_3g465870	62.288	472	128	9	1	468	1	426	0.0	557
MS.gene049466.t1	MTR_6g053810	60.043	468	178	7	2	466	3	464	0.0	555
MS.gene049466.t1	MTR_4g055170	52.248	467	200	11	7	467	9	458	5.66e-153	443
MS.gene049466.t1	MTR_2g015430	30.998	471	270	14	10	462	2	435	4.89e-60	203
MS.gene049466.t1	MTR_8g096530	27.897	466	282	17	8	462	5	427	1.29e-36	140
MS.gene049466.t1	MTR_1g081660	28.446	457	284	16	17	464	25	447	2.80e-36	139
MS.gene049466.t1	MTR_7g027175	30.905	398	246	14	14	407	20	392	1.62e-35	137
MS.gene049466.t1	MTR_1g040175	31.143	350	211	13	10	350	9	337	1.66e-34	134
MS.gene049466.t1	MTR_1g053315	29.194	459	283	23	18	461	26	457	3.05e-33	131
MS.gene049466.t1	MTR_7g114520	28.384	458	286	16	17	464	18	443	6.44e-33	130
MS.gene049466.t1	MTR_1g040215	27.443	481	285	18	4	464	3	439	1.55e-31	126
MS.gene049466.t1	MTR_3g098980	27.489	462	282	19	8	459	12	430	2.80e-31	125
MS.gene049466.t1	MTR_7g110610	30.508	354	171	12	17	360	12	300	6.40e-31	123
MS.gene049466.t1	MTR_3g071320	29.258	458	280	18	10	457	5	428	2.18e-30	122
MS.gene049466.t1	MTR_5g076700	26.382	398	262	12	17	407	17	390	1.03e-28	118
MS.gene049466.t1	MTR_1g040320	27.174	460	269	15	8	464	7	403	1.19e-28	117
MS.gene049466.t1	MTR_7g114550	28.607	402	247	14	17	407	17	389	5.53e-28	116
MS.gene049466.t1	MTR_7g114470	26.201	458	292	14	17	462	18	441	2.49e-27	114
MS.gene049466.t1	MTR_7g114560	28.358	402	248	15	17	407	17	389	5.92e-26	110
MS.gene049466.t1	MTR_3g112180	25.738	474	284	18	7	458	2	429	9.96e-26	109
MS.gene049466.t1	MTR_7g114490	27.792	403	249	14	17	407	17	389	1.56e-25	109
MS.gene049466.t1	MTR_1g040315	29.231	325	200	11	4	321	3	304	1.50e-24	105
MS.gene049466.t1	MTR_3g026950	25.905	359	238	12	18	364	10	352	1.84e-24	105
MS.gene049466.t1	MTR_3g049150	27.882	373	221	15	12	364	4	348	4.46e-24	104
MS.gene049466.t1	MTR_1g040195	27.778	450	272	15	17	464	16	414	1.31e-23	103
MS.gene049466.t1	MTR_8g075610	27.056	462	271	21	17	459	1	415	1.16e-22	100
MS.gene049466.t1	MTR_2g064495	26.030	461	294	19	10	459	3	427	2.80e-22	99.4
MS.gene049466.t1	MTR_2g105330	25.813	461	295	19	10	459	3	427	2.96e-22	99.4
MS.gene049466.t1	MTR_4g007540	25.758	462	295	19	10	459	3	428	2.57e-20	93.6
MS.gene049466.t1	MTR_7g085930	25.000	436	266	19	56	459	49	455	1.13e-17	85.5
MS.gene049466.t1	MTR_0502s0010	29.555	247	158	8	110	350	2	238	5.08e-17	80.9
MS.gene049466.t1	MTR_7g086000	26.509	381	238	15	8	364	2	364	8.79e-16	79.7
MS.gene049466.t1	MTR_7g085990	26.744	344	207	17	56	374	45	368	1.34e-15	79.3
MS.gene049466.t1	MTR_4g127650	26.471	374	247	14	1	364	1	356	1.40e-15	79.3
MS.gene049466.t1	MTR_4g097090	26.284	331	209	15	67	380	64	376	1.26e-14	76.3
MS.gene049466.t1	MTR_4g022825	25.000	288	188	7	63	336	50	323	4.33e-13	71.2
MS.gene049466.t1	MTR_0042s0190	28.333	240	151	8	172	407	1	223	1.60e-12	68.6
MS.gene049466.t1	MTR_5g090830	23.385	325	208	10	68	371	66	370	1.99e-11	66.2
MS.gene049466.t1	MTR_5g090880	23.583	441	263	17	68	468	67	473	2.47e-11	65.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049466.t1	AT2G23510	40.222	450	248	11	17	464	20	450	1.10e-97	301
MS.gene049466.t1	AT5G07080	39.056	466	246	10	8	464	12	448	2.10e-96	298
MS.gene049466.t1	AT2G25150	38.397	474	266	12	1	467	1	455	2.04e-87	275
MS.gene049466.t1	AT3G47170	36.952	479	269	14	2	464	4	465	4.08e-79	254
MS.gene049466.t1	AT1G28680	35.153	458	272	12	10	462	4	441	4.67e-74	240
MS.gene049466.t1	AT1G28680	36.220	381	223	10	10	385	4	369	7.08e-61	204
MS.gene049466.t1	AT5G41040	28.664	464	281	18	8	461	31	454	8.03e-41	152
MS.gene049466.t1	AT5G41040	28.664	464	281	18	8	461	15	438	9.49e-41	151
MS.gene049466.t1	AT3G62160	28.606	416	246	13	7	411	2	377	2.71e-39	147
MS.gene049466.t1	AT3G03480	30.128	468	282	16	7	464	16	448	2.86e-38	145
MS.gene049466.t1	AT5G17540	27.097	465	301	14	7	464	6	439	4.87e-32	127
MS.gene049466.t1	AT3G48720	28.947	456	274	23	13	459	12	426	1.68e-31	125
MS.gene049466.t1	AT2G40230	30.048	416	266	13	10	420	5	400	2.93e-30	122
MS.gene049466.t1	AT5G63560	28.365	416	254	18	1	407	1	381	9.54e-28	115
MS.gene049466.t1	AT1G03390	25.688	436	278	17	20	439	32	437	9.94e-26	109
MS.gene049466.t1	AT1G27620	25.877	456	271	19	11	450	10	414	1.33e-24	106
MS.gene049466.t1	AT5G48930	27.294	436	261	20	8	415	1	408	9.11e-24	103
MS.gene049466.t1	AT4G31910	26.277	411	255	17	31	414	29	418	4.17e-18	87.0
MS.gene049466.t1	AT1G65450	27.930	401	252	15	8	395	16	392	1.13e-17	85.5
MS.gene049466.t1	AT2G19070	25.349	430	247	19	67	461	57	447	1.99e-16	81.6
MS.gene049466.t1	AT5G57840	26.582	395	234	19	8	380	1	361	1.72e-15	79.0
MS.gene049466.t1	AT1G24430	23.188	345	209	14	69	409	63	355	5.56e-12	67.8

Find 88 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATCTTTCATTTCTAGCTTT+AGG	0.172739	3.2:+56662650	None:intergenic
ATGCAACATGTTTGCGTCTT+TGG	0.207307	3.2:-56661266	MS.gene049466:CDS
CCTTTGCCTGTAGGGTATTA+TGG	0.216144	3.2:-56661571	MS.gene049466:CDS
ATCTTTCATTTCTAGCTTTA+GGG	0.218287	3.2:+56662651	None:intergenic
GATGAAAATAGTATAGATTT+TGG	0.226632	3.2:-56661322	MS.gene049466:CDS
CTGACTGAGTGGAAGCATTT+AGG	0.231506	3.2:-56661352	MS.gene049466:CDS
TTAACTCCTCCTTTCATTGA+TGG	0.282796	3.2:+56661196	None:intergenic
GATTATTATTATCCTCTTGC+AGG	0.285447	3.2:-56662442	MS.gene049466:intron
AAGTTACCCTTTGGTATTCA+TGG	0.294628	3.2:-56662067	MS.gene049466:CDS
ACAATTCATGATTCTGATTC+GGG	0.295244	3.2:-56662511	MS.gene049466:CDS
CCTTTCTTCTCTCCATTACT+TGG	0.299600	3.2:-56662151	MS.gene049466:CDS
GTTGATCAAAGAGACTAAAA+AGG	0.312335	3.2:-56661473	MS.gene049466:CDS
AACTTTGGCATGGCAGCAAC+AGG	0.315484	3.2:+56661157	None:intergenic
AACAATTCATGATTCTGATT+CGG	0.342734	3.2:-56662512	MS.gene049466:CDS
GAAAATGCAACAGGTTCTTT+TGG	0.344870	3.2:+56661838	None:intergenic
CATGTTGTTTGTGATGGATA+TGG	0.348097	3.2:-56661997	MS.gene049466:CDS
TCAATTTCCTCCTTGAACTT+TGG	0.354566	3.2:+56661142	None:intergenic
AGAAGCACTCTCAAAGGCTT+TGG	0.364642	3.2:-56662464	MS.gene049466:CDS
TCCATTGGTGATAAGTTGTA+AGG	0.380173	3.2:+56661648	None:intergenic
GACTCTAAGTCTTCCGTCTC+CGG	0.398680	3.2:+56662236	None:intergenic
AGTGACTCAAAAGTTGTAAC+TGG	0.415404	3.2:+56661703	None:intergenic
GGTGTTGGTGGTGAAGAATA+TGG	0.428362	3.2:-56662207	MS.gene049466:CDS
TCAAGATAAAAGTTACCCTT+TGG	0.431544	3.2:-56662076	MS.gene049466:CDS
TGGTGACAAAATTTATTTGT+GGG	0.442677	3.2:-56662047	MS.gene049466:CDS
TTAGCATATGCTTCTAAGAA+TGG	0.443157	3.2:+56662180	None:intergenic
GCCTTCTGTGTTACCTGTGT+GGG	0.449032	3.2:-56661923	MS.gene049466:CDS
TGCTGCCATGCCAAAGTTCA+AGG	0.449608	3.2:-56661152	MS.gene049466:CDS
GCAATTGTTGAACTTGCAAA+AGG	0.451246	3.2:-56661955	MS.gene049466:CDS
TGTTCACATGTTGTTTGTGA+TGG	0.460683	3.2:-56662003	MS.gene049466:CDS
GTTATGATCCTTTGCCTGTA+GGG	0.466109	3.2:-56661579	MS.gene049466:CDS
GGAAGACTTAGAGTCGAGTT+TGG	0.466467	3.2:-56662228	MS.gene049466:CDS
TCATCATCATCAACTTTACT+AGG	0.476073	3.2:+56661223	None:intergenic
GGTATTAGACGCAGCAAGAA+AGG	0.479750	3.2:-56661601	MS.gene049466:CDS
ACTTAAGATGAGTTTGATGA+AGG	0.481102	3.2:-56661746	MS.gene049466:CDS
GGTTGAAGTAATGGTGGAAG+TGG	0.490092	3.2:+56661859	None:intergenic
ACTAAAGGTGAAAATGCAAC+AGG	0.491686	3.2:+56661829	None:intergenic
TCTTGCTTATGCTCCGTCTC+CGG	0.493846	3.2:+56661409	None:intergenic
AAAAGCAATGTTGAATATGT+TGG	0.498010	3.2:-56661626	MS.gene049466:CDS
AGAAAGAATACAAGAAGGAA+TGG	0.506681	3.2:+56662603	None:intergenic
AAGATGAGTTTGATGAAGGA+AGG	0.508475	3.2:-56661742	MS.gene049466:CDS
CCAAGTAATGGAGAGAAGAA+AGG	0.511310	3.2:+56662151	None:intergenic
GAAAGAGAAAGAATACAAGA+AGG	0.514075	3.2:+56662598	None:intergenic
CTTAGAGTCGAGTTTGGTGT+TGG	0.525295	3.2:-56662222	MS.gene049466:CDS
ATGGTGACAAAATTTATTTG+TGG	0.525993	3.2:-56662048	MS.gene049466:CDS
GGTTATGATCCTTTGCCTGT+AGG	0.529846	3.2:-56661580	MS.gene049466:CDS
TGGGAAAGAGAGAGACTAGT+TGG	0.531305	3.2:-56661904	MS.gene049466:CDS
TATGGTAATACTACTGTGGA+TGG	0.540481	3.2:-56661553	MS.gene049466:CDS
TTCCTCCTTGAACTTTGGCA+TGG	0.549243	3.2:+56661147	None:intergenic
CTCGATCGACACTCCGGAGA+CGG	0.550133	3.2:-56661422	MS.gene049466:CDS
CACAGATATTGCAAAAGACT+TGG	0.550145	3.2:-56662118	MS.gene049466:CDS
AGTCACTTGGTGCTTATGTG+TGG	0.550371	3.2:-56661687	MS.gene049466:CDS
AGAGTCGAGTTTGGTGTTGG+TGG	0.551439	3.2:-56662219	MS.gene049466:CDS
TTGTCACCATGAATACCAAA+GGG	0.551952	3.2:+56662061	None:intergenic
GCCTTACAACTTATCACCAA+TGG	0.553004	3.2:-56661649	MS.gene049466:CDS
TGTCAGTATTGTCCAAGTAA+TGG	0.557500	3.2:+56662139	None:intergenic
AACTTAACAATTTCATAGAG+TGG	0.558390	3.2:+56661493	None:intergenic
AACATGTTTGCGTCTTTGGA+AGG	0.558593	3.2:-56661262	MS.gene049466:CDS
CCATAATACCCTACAGGCAA+AGG	0.559479	3.2:+56661571	None:intergenic
GGTGACAAAATTTATTTGTG+GGG	0.561045	3.2:-56662046	MS.gene049466:CDS
GTGACAAAATTTATTTGTGG+GGG	0.561917	3.2:-56662045	MS.gene049466:CDS
TTTGTCACCATGAATACCAA+AGG	0.565547	3.2:+56662060	None:intergenic
CAAGTAATGGAGAGAAGAAA+GGG	0.566405	3.2:+56662152	None:intergenic
TTTACAAGTATACCTGCAAG+AGG	0.571753	3.2:+56662430	None:intergenic
GGGGTTTCACAATTGGAATG+GGG	0.576134	3.2:-56662026	MS.gene049466:CDS
CAAGAAGGAATGGACTTCGA+TGG	0.577061	3.2:+56662613	None:intergenic
GTATTACCATAATACCCTAC+AGG	0.586409	3.2:+56661565	None:intergenic
GCAAACATGTTGCATGGTGC+TGG	0.589020	3.2:+56661274	None:intergenic
AGCCTTCTGTGTTACCTGTG+TGG	0.596158	3.2:-56661924	MS.gene049466:CDS
CACTTGGTGCTTATGTGTGG+AGG	0.596795	3.2:-56661684	MS.gene049466:CDS
ATTCAAAGAAGCACTCTCAA+AGG	0.600716	3.2:-56662470	MS.gene049466:CDS
ACATGTTTGCGTCTTTGGAA+GGG	0.601109	3.2:-56661261	MS.gene049466:CDS
GGTAGACTAGTGAGACATGC+CGG	0.607006	3.2:-56662255	MS.gene049466:CDS
GCAATGTTGAATATGTTGGT+TGG	0.607643	3.2:-56661622	MS.gene049466:CDS
CTAGTGAGACATGCCGGAGA+CGG	0.615424	3.2:-56662249	MS.gene049466:CDS
GATGATGATCCATCAATGAA+AGG	0.624021	3.2:-56661205	MS.gene049466:CDS
TCCCACACAGGTAACACAGA+AGG	0.627307	3.2:+56661922	None:intergenic
GCTTCTTTGAATACATGACA+AGG	0.632259	3.2:+56662481	None:intergenic
AAAGACGCAAACATGTTGCA+TGG	0.635230	3.2:+56661268	None:intergenic
CGGTAACGATTCTGACTGAG+TGG	0.635573	3.2:-56661363	MS.gene049466:CDS
GATGATCCATCAATGAAAGG+AGG	0.655138	3.2:-56661202	MS.gene049466:CDS
AGTCTCTCTCTTTCCCACAC+AGG	0.657387	3.2:+56661910	None:intergenic
AATCATGAATTGTTGATGAG+CGG	0.662764	3.2:+56662521	None:intergenic
TAGCATGGACGGTAGCGGTG+CGG	0.664954	3.2:-56661383	MS.gene049466:CDS
GTATTATGGTAATACTACTG+TGG	0.668892	3.2:-56661557	MS.gene049466:CDS
CTTCTTTGAATACATGACAA+GGG	0.672661	3.2:+56662482	None:intergenic
ATACATGAACAGCTTGACAA+AGG	0.673504	3.2:+56662545	None:intergenic
ACTTTGGCATGGCAGCAACA+GGG	0.676516	3.2:+56661158	None:intergenic
TGCCATGCCAAAGTTCAAGG+AGG	0.740408	3.2:-56661149	MS.gene049466:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AGCATAAATAAATAAATAAA+CGG	+	chr3.2:56661456-56661475	None:intergenic	10.0%
!!!	TATTAAAATCTATTGTTTTA+AGG	-	chr3.2:56661999-56662018	MS.gene049466:CDS	10.0%
!!!	AAAATAGTATAGATTTTGGA+GGG	-	chr3.2:56662472-56662491	MS.gene049466:CDS	20.0%
!!!	GATGAAAATAGTATAGATTT+TGG	-	chr3.2:56662468-56662487	MS.gene049466:CDS	20.0%
!	AAAAGCAATGTTGAATATGT+TGG	-	chr3.2:56662164-56662183	MS.gene049466:CDS	25.0%
!	AACAATTCATGATTCTGATT+CGG	-	chr3.2:56661278-56661297	MS.gene049466:CDS	25.0%
!	AACTTAACAATTTCATAGAG+TGG	+	chr3.2:56662300-56662319	None:intergenic	25.0%
!	ATGGTGACAAAATTTATTTG+TGG	-	chr3.2:56661742-56661761	MS.gene049466:CDS	25.0%
!	TGGTGACAAAATTTATTTGT+GGG	-	chr3.2:56661743-56661762	MS.gene049466:CDS	25.0%
!!	GAAAATAGTATAGATTTTGG+AGG	-	chr3.2:56662471-56662490	MS.gene049466:CDS	25.0%
!!!	ACTGTTTTTTGTTGAACTAA+AGG	+	chr3.2:56661979-56661998	None:intergenic	25.0%
!!!	ATCTTTCATTTCTAGCTTTA+GGG	+	chr3.2:56661142-56661161	None:intergenic	25.0%
	ACAATTCATGATTCTGATTC+GGG	-	chr3.2:56661279-56661298	MS.gene049466:CDS	30.0%
	ACTTAAGATGAGTTTGATGA+AGG	-	chr3.2:56662044-56662063	MS.gene049466:CDS	30.0%
	AGAAAGAATACAAGAAGGAA+TGG	+	chr3.2:56661190-56661209	None:intergenic	30.0%
	CTTCTTTGAATACATGACAA+GGG	+	chr3.2:56661311-56661330	None:intergenic	30.0%
	GAAAGAGAAAGAATACAAGA+AGG	+	chr3.2:56661195-56661214	None:intergenic	30.0%
	GATTATTATTATCCTCTTGC+AGG	-	chr3.2:56661348-56661367	MS.gene049466:CDS	30.0%
	GGTGACAAAATTTATTTGTG+GGG	-	chr3.2:56661744-56661763	MS.gene049466:CDS	30.0%
	GTATTATGGTAATACTACTG+TGG	-	chr3.2:56662233-56662252	MS.gene049466:CDS	30.0%
	GTGACAAAATTTATTTGTGG+GGG	-	chr3.2:56661745-56661764	MS.gene049466:CDS	30.0%
	GTTGATCAAAGAGACTAAAA+AGG	-	chr3.2:56662317-56662336	MS.gene049466:intron	30.0%
	TCAAGATAAAAGTTACCCTT+TGG	-	chr3.2:56661714-56661733	MS.gene049466:CDS	30.0%
	TCATCATCATCAACTTTACT+AGG	+	chr3.2:56662570-56662589	None:intergenic	30.0%
	TTTAACGAGACATTCTTCTA+TGG	+	chr3.2:56661484-56661503	None:intergenic	30.0%
!	AAAGGGTAACTTTTATCTTG+AGG	+	chr3.2:56661715-56661734	None:intergenic	30.0%
!	AATCATGAATTGTTGATGAG+CGG	+	chr3.2:56661272-56661291	None:intergenic	30.0%
!	TAACTTTTATCTTGAGGAGA+AGG	+	chr3.2:56661709-56661728	None:intergenic	30.0%
!	TTAGCATATGCTTCTAAGAA+TGG	+	chr3.2:56661613-56661632	None:intergenic	30.0%
!!	ATTCAACATTGCTTTTCCAT+TGG	+	chr3.2:56662160-56662179	None:intergenic	30.0%
!!	CATCTTTCATTTCTAGCTTT+AGG	+	chr3.2:56661143-56661162	None:intergenic	30.0%
!!!	TTGTTTTAAGGTTGAAAGTG+AGG	-	chr3.2:56662011-56662030	MS.gene049466:CDS	30.0%
	AAGATGAGTTTGATGAAGGA+AGG	-	chr3.2:56662048-56662067	MS.gene049466:CDS	35.0%
	AAGTTACCCTTTGGTATTCA+TGG	-	chr3.2:56661723-56661742	MS.gene049466:CDS	35.0%
	ACTAAAGGTGAAAATGCAAC+AGG	+	chr3.2:56661964-56661983	None:intergenic	35.0%
	AGTGACTCAAAAGTTGTAAC+TGG	+	chr3.2:56662090-56662109	None:intergenic	35.0%
	ATACATGAACAGCTTGACAA+AGG	+	chr3.2:56661248-56661267	None:intergenic	35.0%
	CACAGATATTGCAAAAGACT+TGG	-	chr3.2:56661672-56661691	MS.gene049466:CDS	35.0%
	GATGATGATCCATCAATGAA+AGG	-	chr3.2:56662585-56662604	MS.gene049466:CDS	35.0%
	GCAATGTTGAATATGTTGGT+TGG	-	chr3.2:56662168-56662187	MS.gene049466:CDS	35.0%
	GCAATTGTTGAACTTGCAAA+AGG	-	chr3.2:56661835-56661854	MS.gene049466:CDS	35.0%
	GCTTCTTTGAATACATGACA+AGG	+	chr3.2:56661312-56661331	None:intergenic	35.0%
	GTATTACCATAATACCCTAC+AGG	+	chr3.2:56662228-56662247	None:intergenic	35.0%
	TATGGTAATACTACTGTGGA+TGG	-	chr3.2:56662237-56662256	MS.gene049466:CDS	35.0%
	TCAATTTCCTCCTTGAACTT+TGG	+	chr3.2:56662651-56662670	None:intergenic	35.0%
	TGTCAGTATTGTCCAAGTAA+TGG	+	chr3.2:56661654-56661673	None:intergenic	35.0%
	TTAACTCCTCCTTTCATTGA+TGG	+	chr3.2:56662597-56662616	None:intergenic	35.0%
	TTGTCACCATGAATACCAAA+GGG	+	chr3.2:56661732-56661751	None:intergenic	35.0%
	TTTACAAGTATACCTGCAAG+AGG	+	chr3.2:56661363-56661382	None:intergenic	35.0%
	TTTGTCACCATGAATACCAA+AGG	+	chr3.2:56661733-56661752	None:intergenic	35.0%
!	CAAGTAATGGAGAGAAGAAA+GGG	+	chr3.2:56661641-56661660	None:intergenic	35.0%
!	GAAAATGCAACAGGTTCTTT+TGG	+	chr3.2:56661955-56661974	None:intergenic	35.0%
!	TCCATTGGTGATAAGTTGTA+AGG	+	chr3.2:56662145-56662164	None:intergenic	35.0%
!	TGTTCACATGTTGTTTGTGA+TGG	-	chr3.2:56661787-56661806	MS.gene049466:CDS	35.0%
!!	AAGCAAGATTTTAGCATGGA+CGG	-	chr3.2:56662396-56662415	MS.gene049466:intron	35.0%
!!	ATTCAAAGAAGCACTCTCAA+AGG	-	chr3.2:56661320-56661339	MS.gene049466:CDS	35.0%
!!	CATGTTGTTTGTGATGGATA+TGG	-	chr3.2:56661793-56661812	MS.gene049466:CDS	35.0%
!!	GCATAAGCAAGATTTTAGCA+TGG	-	chr3.2:56662392-56662411	MS.gene049466:intron	35.0%
!!	GGTTCTTTTGGTTGAAGTAA+TGG	+	chr3.2:56661943-56661962	None:intergenic	35.0%
!!	GTTACAACTTTTGAGTCACT+TGG	-	chr3.2:56662090-56662109	MS.gene049466:CDS	35.0%
!!	TCTTTTGGTTGAAGTAATGG+TGG	+	chr3.2:56661940-56661959	None:intergenic	35.0%
	AAAGACGCAAACATGTTGCA+TGG	+	chr3.2:56662525-56662544	None:intergenic	40.0%
	AACATGTTTGCGTCTTTGGA+AGG	-	chr3.2:56662528-56662547	MS.gene049466:CDS	40.0%
	ATGCAACATGTTTGCGTCTT+TGG	-	chr3.2:56662524-56662543	MS.gene049466:CDS	40.0%
	ATTTGTGGGGGTTTCACAAT+TGG	-	chr3.2:56661757-56661776	MS.gene049466:CDS	40.0%
	CCTTTCTTCTCTCCATTACT+TGG	-	chr3.2:56661639-56661658	MS.gene049466:CDS	40.0%
	GATGATCCATCAATGAAAGG+AGG	-	chr3.2:56662588-56662607	MS.gene049466:CDS	40.0%
	GCCTTACAACTTATCACCAA+TGG	-	chr3.2:56662141-56662160	MS.gene049466:CDS	40.0%
	GTTATGATCCTTTGCCTGTA+GGG	-	chr3.2:56662211-56662230	MS.gene049466:CDS	40.0%
!	ACATGTTTGCGTCTTTGGAA+GGG	-	chr3.2:56662529-56662548	MS.gene049466:CDS	40.0%
!	CCAAGTAATGGAGAGAAGAA+AGG	+	chr3.2:56661642-56661661	None:intergenic	40.0%
!	CGAGTTTTTGACGTAATCAC+TGG	+	chr3.2:56662352-56662371	None:intergenic	40.0%
!	GGATTGAGAAGTTGGTTTAG+TGG	+	chr3.2:56661507-56661526	None:intergenic	40.0%
!	GTTTTTGACGTAATCACTGG+TGG	+	chr3.2:56662349-56662368	None:intergenic	40.0%
	AACTTCTCAATCCGTTTCCC+AGG	-	chr3.2:56661514-56661533	MS.gene049466:CDS	45.0%
	CAAAAACTCGATCGACACTC+CGG	-	chr3.2:56662362-56662381	MS.gene049466:intron	45.0%
	CCATAATACCCTACAGGCAA+AGG	+	chr3.2:56662222-56662241	None:intergenic	45.0%
	GGAAGACTTAGAGTCGAGTT+TGG	-	chr3.2:56661562-56661581	MS.gene049466:CDS	45.0%
	GGGGGTTTCACAATTGGAAT+GGG	-	chr3.2:56661763-56661782	MS.gene049466:CDS	45.0%
	GGGGTTTCACAATTGGAATG+GGG	-	chr3.2:56661764-56661783	MS.gene049466:CDS	45.0%
	GGTATTAGACGCAGCAAGAA+AGG	-	chr3.2:56662189-56662208	MS.gene049466:CDS	45.0%
	GGTTATGATCCTTTGCCTGT+AGG	-	chr3.2:56662210-56662229	MS.gene049466:CDS	45.0%
	TGGGAAAGAGAGAGACTAGT+TGG	-	chr3.2:56661886-56661905	MS.gene049466:CDS	45.0%
	TGGGGGTTTCACAATTGGAA+TGG	-	chr3.2:56661762-56661781	MS.gene049466:CDS	45.0%
	TTCCTCCTTGAACTTTGGCA+TGG	+	chr3.2:56662646-56662665	None:intergenic	45.0%
!	CAAGAAGGAATGGACTTCGA+TGG	+	chr3.2:56661180-56661199	None:intergenic	45.0%
!	CATGTCTCACTAGTCTACCT+GGG	+	chr3.2:56661534-56661553	None:intergenic	45.0%
!	CCTTTGCCTGTAGGGTATTA+TGG	-	chr3.2:56662219-56662238	MS.gene049466:CDS	45.0%
!	GGTTGAAGTAATGGTGGAAG+TGG	+	chr3.2:56661934-56661953	None:intergenic	45.0%
!	TCACTAGTCTACCTGGGAAA+CGG	+	chr3.2:56661528-56661547	None:intergenic	45.0%
!!	AGAAGCACTCTCAAAGGCTT+TGG	-	chr3.2:56661326-56661345	MS.gene049466:CDS	45.0%
!!	AGTCACTTGGTGCTTATGTG+TGG	-	chr3.2:56662103-56662122	MS.gene049466:CDS	45.0%
!!	CTGACTGAGTGGAAGCATTT+AGG	-	chr3.2:56662438-56662457	MS.gene049466:intron	45.0%
!!	CTTAGAGTCGAGTTTGGTGT+TGG	-	chr3.2:56661568-56661587	MS.gene049466:CDS	45.0%
!!	GATTTTAGCATGGACGGTAG+CGG	-	chr3.2:56662402-56662421	MS.gene049466:intron	45.0%
!!	GGTGTTGGTGGTGAAGAATA+TGG	-	chr3.2:56661583-56661602	MS.gene049466:CDS	45.0%
!!	TGGGAAACGGATTGAGAAGT+TGG	+	chr3.2:56661515-56661534	None:intergenic	45.0%
	AACTTTGGCATGGCAGCAAC+AGG	+	chr3.2:56662636-56662655	None:intergenic	50.0%
	ACTTTGGCATGGCAGCAACA+GGG	+	chr3.2:56662635-56662654	None:intergenic	50.0%
	AGCCTTCTGTGTTACCTGTG+TGG	-	chr3.2:56661866-56661885	MS.gene049466:CDS	50.0%
	AGTCTCTCTCTTTCCCACAC+AGG	+	chr3.2:56661883-56661902	None:intergenic	50.0%
	CGGTAACGATTCTGACTGAG+TGG	-	chr3.2:56662427-56662446	MS.gene049466:intron	50.0%
	GACTCTAAGTCTTCCGTCTC+CGG	+	chr3.2:56661557-56661576	None:intergenic	50.0%
	GCAAACATGTTGCATGGTGC+TGG	+	chr3.2:56662519-56662538	None:intergenic	50.0%
	GCCTTCTGTGTTACCTGTGT+GGG	-	chr3.2:56661867-56661886	MS.gene049466:CDS	50.0%
	GGTAGACTAGTGAGACATGC+CGG	-	chr3.2:56661535-56661554	MS.gene049466:CDS	50.0%
	TCCCACACAGGTAACACAGA+AGG	+	chr3.2:56661871-56661890	None:intergenic	50.0%
	TCTTGCTTATGCTCCGTCTC+CGG	+	chr3.2:56662384-56662403	None:intergenic	50.0%
	TGCCATGCCAAAGTTCAAGG+AGG	-	chr3.2:56662641-56662660	MS.gene049466:CDS	50.0%
	TGCTGCCATGCCAAAGTTCA+AGG	-	chr3.2:56662638-56662657	MS.gene049466:CDS	50.0%
!	GCATGTCTCACTAGTCTACC+TGG	+	chr3.2:56661535-56661554	None:intergenic	50.0%
!!	AGAGTCGAGTTTGGTGTTGG+TGG	-	chr3.2:56661571-56661590	MS.gene049466:CDS	50.0%
!!	CACTTGGTGCTTATGTGTGG+AGG	-	chr3.2:56662106-56662125	MS.gene049466:CDS	50.0%
	CTAGTGAGACATGCCGGAGA+CGG	-	chr3.2:56661541-56661560	MS.gene049466:CDS	55.0%
	CTCGATCGACACTCCGGAGA+CGG	-	chr3.2:56662368-56662387	MS.gene049466:intron	60.0%
!	TAGCATGGACGGTAGCGGTG+CGG	-	chr3.2:56662407-56662426	MS.gene049466:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	56661120	56662692	56661120	ID=MS.gene049466
chr3.2	mRNA	56661120	56662692	56661120	ID=MS.gene049466.t1;Parent=MS.gene049466
chr3.2	exon	56662443	56662692	56662443	ID=MS.gene049466.t1.exon1;Parent=MS.gene049466.t1
chr3.2	CDS	56662443	56662692	56662443	ID=cds.MS.gene049466.t1;Parent=MS.gene049466.t1
chr3.2	exon	56661120	56662276	56661120	ID=MS.gene049466.t1.exon2;Parent=MS.gene049466.t1
chr3.2	CDS	56661120	56662276	56661120	ID=cds.MS.gene049466.t1;Parent=MS.gene049466.t1

Gene Sequence

>MS.gene049466

ATGGCGGATCAGAAAGCATCCCTAAAGCTAGAAATGAAAGATGCTGTGCTTGTAAAACCATCGAAGTCCATTCCTTCTTGTATTCTTTCTCTTTCTACACTTGACAATAAAGACAACAATAATAACCTTTGTCAAGCTGTTCATGTATACCGCTCATCAACAATTCATGATTCTGATTCGGGTTTCGACCCTTGTCATGTATTCAAAGAAGCACTCTCAAAGGCTTTGGATTATTATTATCCTCTTGCAGGTATACTTGTAAAAAAGAAATTTTATAATGATAAATGTTACTAATGAATTGTTATAGCATAAATTTATGTGTGTATCTAAACACCGTTTATTTATTTATTTATGCTCGTGACCATAGAAGAATGTCTCGTTAAACCACTAAACCAACTTCTCAATCCGTTTCCCAGGTAGACTAGTGAGACATGCCGGAGACGGAAGACTTAGAGTCGAGTTTGGTGTTGGTGGTGAAGAATATGGTGTTCCATTCTTAGAAGCATATGCTAATTGCACCCTTTCTTCTCTCCATTACTTGGACAATACTGACACAGATATTGCAAAAGACTTGGTGCTTGATGTTCCTTCTCCTCAAGATAAAAGTTACCCTTTGGTATTCATGGTGACAAAATTTATTTGTGGGGGTTTCACAATTGGAATGGGGTGTTCACATGTTGTTTGTGATGGATATGGTTCAATTCAAGTCTTCAAAGCAATTGTTGAACTTGCAAAAGGAAGAAGTGAGCCTTCTGTGTTACCTGTGTGGGAAAGAGAGAGACTAGTTGGTTCTTCAACAAGTACTAAACAACCACTTCCACCATTACTTCAACCAAAAGAACCTGTTGCATTTTCACCTTTAGTTCAACAAAAAACAGTTATTAAAATCTATTGTTTTAAGGTTGAAAGTGAGGTGATAAAAAAACTTAAGATGAGTTTGATGAAGGAAGGTGATAGTGAAAGTGAACCAGTTACAACTTTTGAGTCACTTGGTGCTTATGTGTGGAGGTCAAGAGCAAGAGCCTTACAACTTATCACCAATGGAAAAGCAATGTTGAATATGTTGGTTGGTATTAGACGCAGCAAGAAAGGTTATGATCCTTTGCCTGTAGGGTATTATGGTAATACTACTGTGGATGGAAAAGTTGTTTTAAGAGTGAGTGAGCTCAATGAAATGCCACTCTATGAAATTGTTAAGTTGATCAAAGAGACTAAAAAGGTTGCTTCCACCAGTGATTACGTCAAAAACTCGATCGACACTCCGGAGACGGAGCATAAGCAAGATTTTAGCATGGACGGTAGCGGTGCGGTAACGATTCTGACTGAGTGGAAGCATTTAGGTTTTCTTGATGAAAATAGTATAGATTTTGGAGGGTATGAATCAGTGAATTTTGTACCAGCACCATGCAACATGTTTGCGTCTTTGGAAGGGTGCATTTTCGCATCTCCTAGTAAAGTTGATGATGATGATGATCCATCAATGAAAGGAGGAGTTAAGATTTTCACATCACTCCCTGTTGCTGCCATGCCAAAGTTCAAGGAGGAAATTGAAGCTTTAAGATTACTTAATTGA

Protein sequence

>MS.gene049466.t1

MADQKASLKLEMKDAVLVKPSKSIPSCILSLSTLDNKDNNNNLCQAVHVYRSSTIHDSDSGFDPCHVFKEALSKALDYYYPLAGRLVRHAGDGRLRVEFGVGGEEYGVPFLEAYANCTLSSLHYLDNTDTDIAKDLVLDVPSPQDKSYPLVFMVTKFICGGFTIGMGCSHVVCDGYGSIQVFKAIVELAKGRSEPSVLPVWERERLVGSSTSTKQPLPPLLQPKEPVAFSPLVQQKTVIKIYCFKVESEVIKKLKMSLMKEGDSESEPVTTFESLGAYVWRSRARALQLITNGKAMLNMLVGIRRSKKGYDPLPVGYYGNTTVDGKVVLRVSELNEMPLYEIVKLIKETKKVASTSDYVKNSIDTPETEHKQDFSMDGSGAVTILTEWKHLGFLDENSIDFGGYESVNFVPAPCNMFASLEGCIFASPSKVDDDDDPSMKGGVKIFTSLPVAAMPKFKEEIEALRLLN