AlfalfaGEDB | MS.gene47398

M. sativa cultivar XinJiangDaYe / MS.gene47398

KEGG: K09837
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47398.t1	AES60693.1	99	518	5	0	22	539	24	541	1.60E-295	1024.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47398.t1	Q6TBX7	79.0	515	107	1	23	537	26	539	3.7e-240	832.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47398.t1	G7IA76	99.0	518	5	0	22	539	24	541	1.2e-295	1024.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene47398	0.850303	1.85E-60	-1.69E-46
MS.gene049222	MS.gene47398	0.807693	4.46E-50	-1.69E-46
MS.gene049351	MS.gene47398	0.858031	1.09E-62	-1.69E-46
MS.gene049356	MS.gene47398	0.836363	9.78E-57	-1.69E-46
MS.gene049369	MS.gene47398	0.83055	2.76E-55	-1.69E-46
MS.gene049427	MS.gene47398	0.858558	7.59E-63	-1.69E-46
MS.gene049491	MS.gene47398	0.821603	3.70E-53	-1.69E-46
MS.gene049609	MS.gene47398	0.845756	3.33E-59	-1.69E-46
MS.gene049661	MS.gene47398	0.805254	1.46E-49	-1.69E-46
MS.gene049662	MS.gene47398	0.802259	6.11E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47398.t1	MTR_1g062190	99.069	537	5	0	3	539	5	541	0.0	1100
MS.gene47398.t1	MTR_7g079440	51.868	455	214	5	87	539	199	650	2.50e-162	478
MS.gene47398.t1	MTR_5g009110	44.600	500	236	11	75	537	75	570	1.01e-137	411
MS.gene47398.t1	MTR_7g079440	51.538	390	185	4	87	475	199	585	4.20e-135	404
MS.gene47398.t1	MTR_5g009110	44.787	422	196	9	152	537	2	422	1.35e-114	346
MS.gene47398.t1	MTR_5g009110	44.094	381	192	8	75	438	75	451	2.87e-99	308
MS.gene47398.t1	MTR_7g079440	48.966	290	145	3	87	375	199	486	2.92e-91	288
MS.gene47398.t1	MTR_5g009110	44.079	304	153	6	151	438	1	303	3.55e-76	243
MS.gene47398.t1	MTR_7g006900	29.550	467	291	14	80	534	29	469	5.47e-47	171
MS.gene47398.t1	MTR_6g017325	28.571	490	300	17	64	534	46	504	6.28e-43	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47398.t1	AT3G53130	80.754	504	89	1	34	537	44	539	0.0	868
MS.gene47398.t1	AT1G31800	51.055	474	224	6	68	539	104	571	1.54e-162	475
MS.gene47398.t1	AT4G15110	44.807	491	232	9	87	539	91	580	4.16e-137	409
MS.gene47398.t1	AT3G14630	29.231	455	288	13	94	536	75	507	5.58e-43	160
MS.gene47398.t1	AT3G14630	29.231	455	288	13	94	536	130	562	9.50e-43	160
MS.gene47398.t1	AT2G44890	27.394	449	288	13	108	532	69	503	4.55e-41	155
MS.gene47398.t1	AT2G26710	30.046	436	278	15	102	529	91	507	4.79e-41	155
MS.gene47398.t1	AT3G14620	27.880	434	287	13	103	529	93	507	1.30e-39	151
MS.gene47398.t1	AT2G45510	26.906	446	294	11	108	532	69	503	2.00e-39	150
MS.gene47398.t1	AT3G14610	28.859	447	280	14	80	512	65	487	1.39e-37	145

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Find 97 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACTTGCCTTCCAAT+AGG	0.389288	1.4:-51242129	None:intergenic
AAAATGCTGTTAGTGTTATC+AGG	0.357270	1.4:+51242278	MS.gene47398:CDS
AAACAACAAAATCCACTTCA+TGG	0.391502	1.4:+51240214	MS.gene47398:CDS
AAACATGTGCTTAAGAATTA+TGG	0.145542	1.4:+51240459	MS.gene47398:CDS
AAAGAACTTGCCTTCCAATA+GGG	0.461153	1.4:-51242128	None:intergenic
AAAGAGATTGTAGAGTCCGA+GGG	0.656460	1.4:+51242331	MS.gene47398:CDS
AAATCTGTATTTGTTTCATT+TGG	0.333904	1.4:-51245193	None:intergenic
AACAACAAAATCCACTTCAT+GGG	0.557988	1.4:+51240215	MS.gene47398:CDS
AACATGTGCTTAAGAATTAT+GGG	0.366653	1.4:+51240460	MS.gene47398:CDS
AAGATCTTTCATATCTTCAT+AGG	0.350743	1.4:-51243840	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAGATATTTCGGTTG+AGG	-	chr1.4:51240811-51240830	None:intergenic	30.0%
AAAAGAGATATTTCGGTTGA+GGG	-	chr1.4:51240810-51240829	None:intergenic	30.0%
AAAATGCTGTTAGTGTTATC+AGG	+	chr1.4:51242278-51242297	MS.gene47398:CDS	30.0%
AAACAACAAAATCCACTTCA+TGG	+	chr1.4:51240214-51240233	MS.gene47398:CDS	30.0%
AAACTCAAAGACATTCATAC+TGG	-	chr1.4:51243941-51243960	None:intergenic	30.0%
AACAACAAAATCCACTTCAT+GGG	+	chr1.4:51240215-51240234	MS.gene47398:CDS	30.0%
AAGACATTCATACTGGAAAT+TGG	-	chr1.4:51243934-51243953	None:intergenic	30.0%
ACTTGCAATGCATAGAAAAT+CGG	-	chr1.4:51246028-51246047	None:intergenic	30.0%
ACTTTAATTCAATGGTTGGA+TGG	+	chr1.4:51241632-51241651	MS.gene47398:intron	30.0%
AGCAAAAATCGAAGAATACT+AGG	-	chr1.4:51242397-51242416	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	51240075	51246251	51240075	ID=MS.gene47398
chr1.4	mRNA	51240075	51246251	51240075	ID=MS.gene47398.t1;Parent=MS.gene47398
chr1.4	exon	51240075	51240566	51240075	ID=MS.gene47398.t1.exon1;Parent=MS.gene47398.t1
chr1.4	CDS	51240075	51240566	51240075	ID=cds.MS.gene47398.t1;Parent=MS.gene47398.t1
chr1.4	exon	51241843	51242139	51241843	ID=MS.gene47398.t1.exon2;Parent=MS.gene47398.t1
chr1.4	CDS	51241843	51242139	51241843	ID=cds.MS.gene47398.t1;Parent=MS.gene47398.t1
chr1.4	exon	51242235	51242432	51242235	ID=MS.gene47398.t1.exon3;Parent=MS.gene47398.t1
chr1.4	CDS	51242235	51242432	51242235	ID=cds.MS.gene47398.t1;Parent=MS.gene47398.t1
chr1.4	exon	51243123	51243224	51243123	ID=MS.gene47398.t1.exon4;Parent=MS.gene47398.t1
chr1.4	CDS	51243123	51243224	51243123	ID=cds.MS.gene47398.t1;Parent=MS.gene47398.t1
chr1.4	exon	51243776	51243916	51243776	ID=MS.gene47398.t1.exon5;Parent=MS.gene47398.t1
chr1.4	CDS	51243776	51243916	51243776	ID=cds.MS.gene47398.t1;Parent=MS.gene47398.t1
chr1.4	exon	51244518	51244625	51244518	ID=MS.gene47398.t1.exon6;Parent=MS.gene47398.t1
chr1.4	CDS	51244518	51244625	51244518	ID=cds.MS.gene47398.t1;Parent=MS.gene47398.t1
chr1.4	exon	51245136	51245218	51245136	ID=MS.gene47398.t1.exon7;Parent=MS.gene47398.t1
chr1.4	CDS	51245136	51245218	51245136	ID=cds.MS.gene47398.t1;Parent=MS.gene47398.t1
chr1.4	exon	51245785	51245947	51245785	ID=MS.gene47398.t1.exon8;Parent=MS.gene47398.t1
chr1.4	CDS	51245785	51245947	51245785	ID=cds.MS.gene47398.t1;Parent=MS.gene47398.t1
chr1.4	exon	51246216	51246251	51246216	ID=MS.gene47398.t1.exon9;Parent=MS.gene47398.t1
chr1.4	CDS	51246216	51246251	51246216	ID=cds.MS.gene47398.t1;Parent=MS.gene47398.t1

Gene Sequence

>MS.gene47398

ATGCCATCATGTTCATGTTCATGTTCACTTCCTCTCTCTCATCTTTCTCTCTCTTCCTTCTCCAAAACACCACTCCCACAAAAACGTTATCCACTTCATCCTCGTATCTCAACAAAATCCTCAACCAACAAAAACCCTGAAACAACAAAATCCACTTCATGGGTAAGTCCAGATTGGCTCACATCACTTTCCAAATCCTTAACAACATCAAAAGATGATGATTCCAACATTCCTATAGCAAGTGCTAAGCTTGATGATGTTTCTGATCTTTTGGGTGGTGCTCTTTTTCTTCCTTTGTTTAAATGGATGAATGAGTATGGTCCTATTTATCGTTTAGCTGCTGGTCCTAGAAACTTTGTTGTTGTTAGTGATCCTGCTATTGCTAAACATGTGCTTAAGAATTATGGGAAATATGGTAAAGGTCTTGTTGCTGAGGTTTCTGAGTTTTTGTTTGGGGATGGTTTTGCTATTGCTGAAGGACCTCTTTGGACGGTATTCTTTAATTCTTTGACGTCGTTTCCATTCTGATTATGTTTTATGTTTTTTATAGCAATGTGGGATGTTTTGGTTGTGCTGTGCTATAGAGTTTTAAGTGTTAACTGTTAAGCAAGAATTATTATTGAATAAATAAGGATTTTGCTCCTCGAAATTTTAAGGGTCGAGCAATTTAGTCTCTCAAATATAGGAAATAGCAATTTCGTCGCTTAAATTAAGGAAAGTCATTTATTTAGTCCCTCAACCGAAATATCTCTTTTTTGTAAATTGACCAACCCTGGCAATTTGAGGGACTAAATTGACCGACCCTGGCAATTTCAAGGACTAAAATGTTTGATTTACTTTCTGTATCAATGTTCTCTATTTGTTATTTGATCAAGTTAATGATGAGTTTATTTTTTGAATGGCAAATGTTAGTAATTAGTTGTTAGTACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAGCAAAAAAAATTTGTTTCAAAATGAATGTCACTTTCGGTTTTCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTTCAATTAATACTATGTTACACTACTTCCAAATTATTATTTTTACTTTAATGAAAAACAAACCAATAGTTGATTAGGATAATTTGGTAAAATTGCTATGACATTTGACTATTTTATTCCATTCCTTAACCTGTGTGCAATTGGCTAAAGCGACACTCATTTTGAAACGGAGGGAGTATTAATTTTTCCTCCTTTGTCCGGGTTTGAGCCCAGGACCTTCGACTCCTTATCCCTTAGCTCAAACTAGTTGAGCTACCCAACCCCCTCAAGTTATTGATGAGTTAATAACTCAATCTATGTATTAAATTTCATCAATCCAATAATTCGATATGTAATTTTAGGAATTTTTGCTCAATGAGCATGCACACAAAAGTTTAGGAAAATTTGCTGTGATGTAATTTTATGGTAGCAATTTATTTATATTCTAAAAGTACATTTTATGTTAAATTTAAGACATTTGATGAATTATCATCCAGTTTTAAAATTTACAAACTTTTGCGGACCTGGTCTACTCAGTAAGAACTTTAATTCAATGGTTGGATGGTGAACCTTAATGTATACAATGAGTTCTTGCATGGAGTTGGAGGTCCAGGGTTCAAACCCGGACGAAGGAGTAAATATAAATCTACTAACTACTGGGATTTGCCATTCCAAAAACAAAAAAGTAATGGTTTTATAGATTATTTTGGGCATCCGGCGATCTTGTTACAGTTATTTTCTTATATGTATTAGGCAAGGCGCAGGGCTGTGGTTCCATCTCTTCACAAACGGTACTTGTCTATCATGGTGGATAGGGTGTTTTGTAAATGTGCAGAGAGATTAGTAGAGAAGCTACAGTCTGATGCAATTAATGGAACTGCTGTTAACATGGAGGACAAGTTTTCTCAGTTAACCCTTGATGTTATTGGTTTATCCGTGTTCAACTACAACTTTGACGCACTGAATTCAGACAGTCCTGTTATTGAAGCCGTTTACACTGCACTGAAAGAGGCAGAGGCTCGGTCAACCGATCTTTTGCCCTATTGGAAGGCAAGTTCTTTTCTCATATCCCATTTGTTATATGAAGTTTGGATTTTCTTTCTGTGTTCATCACCTTTTCTGTCCTTGTTTTAATTTTGCTGCAGATTGATTTTCTTTGTAAGATAATTCCAAGACAAATAAAGGCTGAAAATGCTGTTAGTGTTATCAGGAAAACTGTAGAAGACCTTATTGAACAATGTAAAGAGATTGTAGAGTCCGAGGGTGAAAGAATTGATGCTGATGAGTATGTGAATGATGCTGATCCTAGTATTCTTCGATTTTTGCTTGCCAGCAGAGAAGAGGTATGATGTATGTCTATTCCAAAAGTATACTTTGCTTTTATCGTCGTGTTCTCTGGCGACTGGCTGTATATTCAGAATGTATTATAATATATGTTTGATATTAGATGATATATAAAGTTTCCCTTTTCTGTTAGATTATGAGTCTTTTACCATTTCTGAATTTTGACAGGCAGTGGTATAGATGAACAGTGCATTTGTTTTATGTGAACATTATTAGTTGTTTGTAATTACTTAACATTCTGTTCAAGTTACTCAGGCTGAGATGTTGAACATAGCACAACCATGTAAATTTCATATTTCAATTATTGTTTAAAAATGTTCATTTTTCCATTTTTTTTTCTTGGTCATTACATTAAATTTTTTAAAAGGGGTCAACCTTCTAATTTTCTGATTTTGGAACTTCTAGTTGTGAAAGTTTTCCACAATGACACGAATTGTGGCTTTTCATGTTCATGTAGTGTTGTTGTGCTTTTTCCTCAATTGTTGAGCTTTGGTTCATTTAGTTGCACTGCTTCATTAAGTTAATCACAAATATGAAGGTCTACACCACCATAACTTCCATCCTGGAACATGCCATATCAGTATACAATGACAATACTTTGATTCATCTTCGGAGTTTATACTTTACTTTCGCTTTCTTTTGATCCGTTCTACATGTTTATATTCTTACTTAGTGGTTCTACATGTCAGGTTTCTAGTGTGCAATTAAGGGATGATCTTTTGTCAATGTTAGTTGCTGGTCATGAGACCACTGGTTCGGTGCTGACTTGGACACTTTATCTTCTAAGTAAGGTACCATTTTACTCTTCTTCAGTGTATTTAGTTTTCTTTCTAAATGACAACGCTCTCATCATTTCATCCCTCTTCTTTACGATTTGTTGGAACAATATTTAAAAGTCCCAACACGATTTGACTGCAAAACCTCTCAATTTTTCAATAACGTTAAGAAGTTGCTGTTGTATAATTTTTTTTTATGGCGTAACATGGAAACTGATTATGCGTCTGGGTCGCATGATGTTGATACATTGTTTTGAATTTCCCTTTTGAACTCTTAATTAATCGTCAAATTACAAATTTTCCCCCCTTTTGTCCTCATAGCTAATCTAGCTATGAATATAGAAAGGTGGAAACTTTAAAACCAATTTAATGACCTCATAACCTTCTAATTTCATTCAGCTCTGAGAATGATTCGAGGACTTTGTCAATTTTTATCCATTCTGATTTTTAGTTTATATATGTCTCTATTTATGTGTTGTAACATATGATTGTTAGCATTGAGCCAACACAGAACAAGAGCTCCATTATGGTCTTCCCCCTGTGAATTATTATCTCTATTAATGCAGGATTCTTCCTCATTGGCAAAAGCTCAAGAAGAGGTAGACAGAGTTTTACAGGGAAGGCGTCCTACCTATGAAGATATGAAAGATCTTAAGTTCTTGAACCGCTGTATTATCGAGTCACTCCGACTTTATCCACATCCTCCTGTAGGTTACTTACACCAATTTCCAGTATGAATGTCTTTGAGTTTGAAAATATTTTTTATTATCTTGTGTATGAAAGTTCTAAACTTATGTATAGGTTATGCTTGATAGGCAAAACTTCCGATATGACAAACAGTTTAATTTGTTATTTTTTAAACTTTGAAAGTAATATTTGCTGATATAATGGTCCTCCTGATTGCTGGAATTTCTGAAATCTAGTAGTTTCTGAGAATTATTCCTTTTTGATATTCTTTGATTACATATGTTACTATCTTCATAACTGGTACTGTTTAGGAGAAGCATATCATTGGCATAAGTGACAGACTACAATAGTAGACTTGACACCATAGCTTGTCTCCAAACCTTAAGGCAATTTGCAATTTAGTATATGGGCCTTTACACTTATATTATTTTTATTAAACCTTTTATTAACCAATGTCAAACTTCATCACTTAGTTGAATTTCCAACAAAGTCTTACACAAAACCTCTCTAGATATAGCTGTACATTTTAATCTTTTATACTTTGTTGGAACTGACTAGTGAAATATCTTTGACTAATTTTATATTTTCTGATGGTTTTATATGACTCTATGCATCCTTAAGGTATTGATAAGAAGATCTCAAATTCCTGATGAGCTTCCGGGTGATTACAAAATCGATGCCGGTCAAGATATTATGATTTCTGTGTACAACATACATCATTCTTCTAAGGTATTACTTGATGTTCTTAAGTGAGAAGGTTTCATATAAAGACAGCATAGACCTTTGATATTATGCTTCTCTTTGTATTTTTTAATTGAATATTTTAAAATGGTTAGAACCTGTTCGATTCCATTTCAAAATGAATCTTCTGTTTCCTTGATTTTTTTTCAAAGGACAGGAGCAAAACAGAAAGAAGAATAATACTCTGGATTATTACAAAGCAAGTTTGATTTTATAGTGTAGTAGAAGTTACCTTGTCTCTTTTTTGGTTTTCAGTATAGAAATGATTATATCAATAAAGCAATTTGCTGTTATCAGTGTTCGGATGATTAGTTTTTCAAATCAGTGGTTGCTTTGTTTAAATTCTTTATATCACAGAAACATTGTCCGTCCTATCTTTATGCTTGTCCGTAGGTGATTAAAATAAAAAATGTGATACACACCTTATTTCTATCTCGGTTTTGACTTTTAAGATCACTATATTGATCTATTGTATTTATTTCATTATGATTTTTCCAGGTTTGGGATAGAGCTGAAGAGTTTTTGCCAGAAAGATTTGATTTGGATGGTCCAGTACCAAATGAAACAAATACAGATTTCAGGTGCGCAATTTGGTTACAGTCAAAATTATTGCACTCCACAAAAGTGGTGTAAATTACACCTCTGCTCTTGTAGCTAGTTACTTACACAATAAGATTCTGTTTGGATAAACAACTTAATCAATCATTTATAGCATAATTCTGTTTAAATATAAGCTTTTATGCATAAGCACTTACAATATAAGCGTTAGTGTAGAAGTTACTTGTATAACAAAAGATAAAATAATGTTAAATTGTTTTCATATAAGTTGTTTTCATAAGCTATCATGGAGAGCTTATGAAAATAAGCTGAAAACAATTTATGGACATGTTAAAAGCTGTTTCCTTAAACTCTCCCAAACAGACATACATTTGTTTATGTCAGTAGTTAAGCTCAAATAAGCCAATCTACACAGGCCCTAATTGGCATATTTTATACTCCTACAGTCCTACTAAGTTTCATCCATGCACTCTTATCTTTTCTTTGTTATCTTTTTGGAGGGTGTTCATTTTTGTTATCAATCCTATGGAGTATTTTTATTTGTATATCATAATTTACTCATATTTAGATGAATCAAAACATGTTACAGATTCATTCCATTTAGCGGAGGGCCTCGAAAGTGTGTCGGTGATCAGTTTGCGTTATTGGAAGCTACCGTTGCTCTTGCAGTCTTTTTACAGCACATGAACTTTGAGCTGGTCCCTGATCAGAATATTGGCATGACTACTGGAGCAACAATACATACTACAAATGTAAGGTTATCTATTTGTGTCTTCTTTGATATGTGTTTTCTGCAAGTGGCTTCTTTAGTTTCAGTTATTCACTTGCACCGATTTTCTATGCATTGCAAGTCTCATTATTTAAGTCTTCTTTCTTTTTATCAAAAGTAGAAGAAAAATATTCATGAAAAATATTCATTAATTTACTCACTCTTATTATGATTTTCCGACTATAAATGAAAGGAAAAGAGACTCTAACTAGTACATTTTATTGTGACCTAATAGGATTTTGTTTTTGCAGGGCTTGTACATGAAACTGAGCCAACGGTTGAAATAG

Protein sequence

>MS.gene47398.t1

MPSCSCSCSLPLSHLSLSSFSKTPLPQKRYPLHPRISTKSSTNKNPETTKSTSWVSPDWLTSLSKSLTTSKDDDSNIPIASAKLDDVSDLLGGALFLPLFKWMNEYGPIYRLAAGPRNFVVVSDPAIAKHVLKNYGKYGKGLVAEVSEFLFGDGFAIAEGPLWTARRRAVVPSLHKRYLSIMVDRVFCKCAERLVEKLQSDAINGTAVNMEDKFSQLTLDVIGLSVFNYNFDALNSDSPVIEAVYTALKEAEARSTDLLPYWKIDFLCKIIPRQIKAENAVSVIRKTVEDLIEQCKEIVESEGERIDADEYVNDADPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKDSSSLAKAQEEVDRVLQGRRPTYEDMKDLKFLNRCIIESLRLYPHPPVLIRRSQIPDELPGDYKIDAGQDIMISVYNIHHSSKVWDRAEEFLPERFDLDGPVPNETNTDFRFIPFSGGPRKCVGDQFALLEATVALAVFLQHMNFELVPDQNIGMTTGATIHTTNGLYMKLSQRLK