AlfalfaGEDB | MS.gene49765

M. sativa cultivar XinJiangDaYe / MS.gene49765

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49765.t1	XP_013446933.1	94.6	185	10	0	36	220	38	222	9.20E-104	386.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49765.t1	Q67YC9	62.6	163	60	1	37	199	36	197	1.7e-58	227.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49765.t1	A0A072U547	94.6	185	10	0	36	220	38	222	6.6e-104	386.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene49765	0.859084	5.28E-63	-1.69E-46
MS.gene049171	MS.gene49765	0.890955	6.17E-74	-1.69E-46
MS.gene049173	MS.gene49765	0.859148	5.06E-63	-1.69E-46
MS.gene049217	MS.gene49765	0.863018	3.36E-64	-1.69E-46
MS.gene049222	MS.gene49765	0.885024	1.16E-71	-1.69E-46
MS.gene049232	MS.gene49765	0.815606	8.48E-52	-1.69E-46
MS.gene049285	MS.gene49765	0.915149	8.29E-85	-1.69E-46
MS.gene049320	MS.gene49765	0.880927	3.67E-70	-1.69E-46
MS.gene049427	MS.gene49765	0.889625	2.05E-73	-1.69E-46
MS.gene049609	MS.gene49765	0.885201	9.97E-72	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49765.t1	MTR_8g096080	92.342	222	15	1	1	220	1	222	2.13e-153	424
MS.gene49765.t1	MTR_8g096110	82.648	219	38	0	1	219	1	219	8.34e-129	362
MS.gene49765.t1	MTR_8g096100	72.642	212	57	1	1	211	1	212	1.56e-106	306
MS.gene49765.t1	MTR_3g098490	66.842	190	56	3	1	187	1	186	3.03e-90	264
MS.gene49765.t1	MTR_3g098500	61.579	190	70	2	1	187	7	196	8.12e-83	246

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49765.t1	AT3G23760	62.162	185	67	2	9	191	11	194	1.41e-83	247
MS.gene49765.t1	AT4G14100	55.556	198	87	1	9	206	8	204	6.34e-81	240

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Find 58 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGACTCAATATGATGT+TGG	0.647948	4.4:-7285831	MS.gene49765:CDS
AACAAGACTTATGGTACGAT+TGG	0.522229	4.4:-7285971	MS.gene49765:CDS
AACATTACACAGAAAATTGT+CGG	0.472163	4.4:+7285755	None:intergenic
AACCCCAAATACACAACAGA+AGG	0.582352	4.4:-7285453	MS.gene49765:CDS
AACTGTTCCGGCCACGGCGC+CGG	0.448851	4.4:+7286035	None:intergenic
AAGTTGAGAGATGAAGGAAG+AGG	0.569210	4.4:+7286078	None:intergenic
AATAGACAGGAGCCTGCCAA+TGG	0.552630	4.4:+7285497	None:intergenic
AATGCATTCTTCTGTGGCAG+AGG	0.552048	4.4:+7286121	None:intergenic
AATGTTGAAATTTCGTCCAT+TGG	0.430457	4.4:+7285947	None:intergenic
ACTAATGAGTGAGATGAGAT+AGG	0.485469	4.4:-7285377	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGACTCAATATGATGT+TGG	-	chr4.4:7285672-7285691	MS.gene49765:intron	30.0%
AATGTTGAAATTTCGTCCAT+TGG	+	chr4.4:7285559-7285578	None:intergenic	30.0%
ATGTTGAAATTTCGTCCATT+GGG	+	chr4.4:7285558-7285577	None:intergenic	30.0%
TTCTCAAATATGACCTTGAA+TGG	-	chr4.4:7285598-7285617	MS.gene49765:intron	30.0%
AACAAGACTTATGGTACGAT+TGG	-	chr4.4:7285532-7285551	MS.gene49765:CDS	35.0%
CAAACAAATGCATTCTTCTG+TGG	+	chr4.4:7285391-7285410	None:intergenic	35.0%
CATATTTGAGAACATCAAGC+TGG	+	chr4.4:7285590-7285609	None:intergenic	35.0%
CTCTTCGAAAACAAGACTTA+TGG	-	chr4.4:7285523-7285542	MS.gene49765:CDS	35.0%
GCCTTACTAAAACAATAGAC+AGG	+	chr4.4:7286022-7286041	None:intergenic	35.0%
GGGAGAAAGTCGAATTTATT+TGG	-	chr4.4:7285772-7285791	MS.gene49765:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	7285378	7286147	7285378	ID=MS.gene49765
chr4.4	mRNA	7285378	7286147	7285378	ID=MS.gene49765.t1;Parent=MS.gene49765
chr4.4	exon	7285679	7286147	7285679	ID=MS.gene49765.t1.exon1;Parent=MS.gene49765.t1
chr4.4	CDS	7285679	7286147	7285679	ID=cds.MS.gene49765.t1;Parent=MS.gene49765.t1
chr4.4	exon	7285378	7285571	7285378	ID=MS.gene49765.t1.exon2;Parent=MS.gene49765.t1
chr4.4	CDS	7285378	7285571	7285378	ID=cds.MS.gene49765.t1;Parent=MS.gene49765.t1

Gene Sequence

>MS.gene49765

ATGGCCTCTGCCACAGAAGAATGCATTTGTTTGTTTTTGTGTCTCTTCCTCTTCCTTCATCTCTCAACTTCGACCACAGAGGACCCAATTCCGGCGCCGTGGCCGGAACAGTTCCACTCAGTCCTACTCCTCAACAGAAGCGGCTCTCTTCGAAAACAAGACTTATGGTACGATTGGCCCAATGGACGAAATTTCAACATTATCCAATACCAGCTTGATGTTCTCAAATATGACCTTGAATGGAACAATGGCACCACCTTTCTCTACACTCTCGACCCTTTCGAGCACACTTGCAAAGTGACTCAATATGATGTTGGTATTCCACGACCCAATTGGCTTGATGGTGCTAATTATTTGGGTCAACAATATGCCGACAATTTTCTGTGTAATGTTTGGGAGAAAGTCGAATTTATTTGGTACTTTGAAGATGTTCTCACTAAAAGACCTGTCAAGTGGATCTTCTACGATGGTTAGTTGCTTTAATTTGAAGTTTTCGTGCTACATATAGCTAAAATTACTGGCTAGAAAAATATGTTATGTTTATTAAATTCATTATATGATGATTGGTGAGTGCAGGAATGATTACTGATGTGATGACATTTGAGGTTGGAGCAGTACTGGATGATGCCCATTGGCAGGCTCCTGTCTATTGTTTTAGTAAGGCTGAGGCTGAACCCCAAATACACAACAGAAGGAGCAGTTTCTCATTAGATTTAGAAGCTGCTATTGTTGATGATTTTCGTTGGACACTAATGAGTGAGATGAGATAG

Protein sequence

>MS.gene49765.t1

MASATEECICLFLCLFLFLHLSTSTTEDPIPAPWPEQFHSVLLLNRSGSLRKQDLWYDWPNGRNFNIIQYQLDVLKYDLEWNNGTTFLYTLDPFEHTCKVTQYDVGIPRPNWLDGANYLGQQYADNFLCNVWEKVEFIWYFEDVLTKRPVKWIFYDGMITDVMTFEVGAVLDDAHWQAPVYCFSKAEAEPQIHNRRSSFSLDLEAAIVDDFRWTLMSEMR