Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82243.t1 | XP_013455187.1 | 51.6 | 190 | 27 | 1 | 1 | 125 | 1 | 190 | 2.20E-38 | 168.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82243.t1 | I3S6F1 | 51.6 | 190 | 27 | 1 | 1 | 125 | 1 | 190 | 1.6e-38 | 168.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene82243 | 0.865127 | 7.40E-65 | -1.69E-46 |
| MS.gene049173 | MS.gene82243 | 0.8336 | 4.86E-56 | -1.69E-46 |
| MS.gene049217 | MS.gene82243 | 0.868808 | 4.96E-66 | -1.69E-46 |
| MS.gene049222 | MS.gene82243 | 0.861447 | 1.02E-63 | -1.69E-46 |
| MS.gene049232 | MS.gene82243 | 0.822692 | 2.07E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene82243 | 0.882103 | 1.38E-70 | -1.69E-46 |
| MS.gene049320 | MS.gene82243 | 0.86306 | 3.26E-64 | -1.69E-46 |
| MS.gene049609 | MS.gene82243 | 0.850969 | 1.20E-60 | -1.69E-46 |
| MS.gene049611 | MS.gene82243 | -0.827585 | 1.44E-54 | -1.69E-46 |
| MS.gene049615 | MS.gene82243 | 0.806788 | 6.94E-50 | -1.69E-46 |
| MS.gene049627 | MS.gene82243 | 0.854937 | 8.82E-62 | -1.69E-46 |
| MS.gene049633 | MS.gene82243 | 0.801806 | 7.57E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene82243 | 0.85133 | 9.52E-61 | -1.69E-46 |
| MS.gene050163 | MS.gene82243 | 0.847359 | 1.22E-59 | -1.69E-46 |
| MS.gene050165 | MS.gene82243 | 0.839862 | 1.23E-57 | -1.69E-46 |
| MS.gene050216 | MS.gene82243 | 0.828038 | 1.12E-54 | -1.69E-46 |
| MS.gene050323 | MS.gene82243 | 0.812876 | 3.40E-51 | -1.69E-46 |
| MS.gene050325 | MS.gene82243 | -0.801887 | 7.28E-49 | -1.69E-46 |
| MS.gene050327 | MS.gene82243 | -0.804495 | 2.10E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene82243 | 0.862477 | 4.93E-64 | -1.69E-46 |
| MS.gene050353 | MS.gene82243 | -0.819471 | 1.14E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene82243 | -0.839754 | 1.31E-57 | -1.69E-46 |
| MS.gene050496 | MS.gene82243 | 0.808263 | 3.37E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene82243 | 0.864651 | 1.04E-64 | -1.69E-46 |
| MS.gene050518 | MS.gene82243 | 0.846482 | 2.11E-59 | -1.69E-46 |
| MS.gene050538 | MS.gene82243 | 0.828262 | 9.91E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene82243 | 0.805766 | 1.14E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene82243 | 0.849596 | 2.92E-60 | -1.69E-46 |
| MS.gene050662 | MS.gene82243 | 0.823339 | 1.46E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene82243 | 0.844904 | 5.66E-59 | -1.69E-46 |
| MS.gene050686 | MS.gene82243 | 0.808099 | 3.66E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene82243 | 0.853062 | 3.06E-61 | -1.69E-46 |
| MS.gene050747 | MS.gene82243 | 0.830842 | 2.34E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene82243 | 0.877604 | 5.50E-69 | -1.69E-46 |
| MS.gene05080 | MS.gene82243 | 0.810069 | 1.38E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene82243 | 0.826259 | 2.99E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene82243 | 0.826063 | 3.33E-54 | -1.69E-46 |
| MS.gene050950 | MS.gene82243 | 0.824647 | 7.21E-54 | -1.69E-46 |
| MS.gene050986 | MS.gene82243 | 0.840053 | 1.10E-57 | -1.69E-46 |
| MS.gene05100 | MS.gene82243 | 0.858632 | 7.21E-63 | -1.69E-46 |
| MS.gene051268 | MS.gene82243 | 0.815314 | 9.85E-52 | -1.69E-46 |
| MS.gene051364 | MS.gene82243 | -0.818852 | 1.58E-52 | -1.69E-46 |
| MS.gene051366 | MS.gene82243 | -0.820798 | 5.67E-53 | -1.69E-46 |
| MS.gene051551 | MS.gene82243 | 0.827028 | 1.96E-54 | -1.69E-46 |
| MS.gene051564 | MS.gene82243 | 0.858374 | 8.61E-63 | -1.69E-46 |
| MS.gene051566 | MS.gene82243 | 0.846631 | 1.92E-59 | -1.69E-46 |
| MS.gene051666 | MS.gene82243 | 0.806059 | 9.89E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene82243 | 0.836836 | 7.41E-57 | -1.69E-46 |
| MS.gene051810 | MS.gene82243 | 0.825704 | 4.05E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene82243 | 0.874327 | 7.37E-68 | -1.69E-46 |
| MS.gene051949 | MS.gene82243 | 0.817941 | 2.54E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene82243 | 0.833443 | 5.32E-56 | -1.69E-46 |
| MS.gene052271 | MS.gene82243 | 0.852257 | 5.20E-61 | -1.69E-46 |
| MS.gene052379 | MS.gene82243 | 0.803463 | 3.44E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene82243 | 0.832208 | 1.08E-55 | -1.69E-46 |
| MS.gene052486 | MS.gene82243 | 0.839376 | 1.64E-57 | -1.69E-46 |
| MS.gene052503 | MS.gene82243 | 0.824642 | 7.23E-54 | -1.69E-46 |
| MS.gene052506 | MS.gene82243 | 0.805185 | 1.51E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene82243 | 0.800711 | 1.27E-48 | -1.69E-46 |
| MS.gene052670 | MS.gene82243 | 0.826401 | 2.77E-54 | -1.69E-46 |
| MS.gene052822 | MS.gene82243 | 0.8182 | 2.22E-52 | -1.69E-46 |
| MS.gene052823 | MS.gene82243 | 0.820554 | 6.45E-53 | -1.69E-46 |
| MS.gene052825 | MS.gene82243 | 0.811826 | 5.76E-51 | -1.69E-46 |
| MS.gene052870 | MS.gene82243 | 0.806224 | 9.13E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene82243 | 0.81633 | 5.85E-52 | -1.69E-46 |
| MS.gene052916 | MS.gene82243 | 0.812876 | 3.40E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene82243 | 0.843921 | 1.04E-58 | -1.69E-46 |
| MS.gene053018 | MS.gene82243 | 0.813869 | 2.06E-51 | -1.69E-46 |
| MS.gene053104 | MS.gene82243 | 0.81249 | 4.13E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene82243 | 0.841394 | 4.88E-58 | -1.69E-46 |
| MS.gene053207 | MS.gene82243 | 0.845024 | 5.25E-59 | -1.69E-46 |
| MS.gene053213 | MS.gene82243 | 0.869692 | 2.56E-66 | -1.69E-46 |
| MS.gene053286 | MS.gene82243 | 0.867632 | 1.19E-65 | -1.69E-46 |
| MS.gene053322 | MS.gene82243 | 0.804716 | 1.89E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene82243 | -0.832018 | 1.20E-55 | -1.69E-46 |
| MS.gene053436 | MS.gene82243 | 0.825288 | 5.09E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene82243 | 0.805918 | 1.06E-49 | -1.69E-46 |
| MS.gene053561 | MS.gene82243 | -0.828277 | 9.83E-55 | -1.69E-46 |
| MS.gene053574 | MS.gene82243 | 0.851345 | 9.43E-61 | -1.69E-46 |
| MS.gene053632 | MS.gene82243 | 0.83615 | 1.11E-56 | -1.69E-46 |
| MS.gene053824 | MS.gene82243 | 0.829932 | 3.90E-55 | -1.69E-46 |
| MS.gene054003 | MS.gene82243 | 0.815452 | 9.18E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene82243 | 0.836048 | 1.18E-56 | -1.69E-46 |
| MS.gene054600 | MS.gene82243 | 0.870337 | 1.58E-66 | -1.69E-46 |
| MS.gene054616 | MS.gene82243 | -0.807133 | 5.86E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene82243 | 0.866264 | 3.24E-65 | -1.69E-46 |
| MS.gene054706 | MS.gene82243 | -0.810373 | 1.19E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene82243 | 0.823173 | 1.60E-53 | -1.69E-46 |
| MS.gene054954 | MS.gene82243 | 0.860684 | 1.74E-63 | -1.69E-46 |
| MS.gene05505 | MS.gene82243 | 0.801538 | 8.59E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene82243 | -0.846431 | 2.18E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene82243 | 0.829749 | 4.33E-55 | -1.69E-46 |
| MS.gene055212 | MS.gene82243 | 0.832393 | 9.70E-56 | -1.69E-46 |
| MS.gene055224 | MS.gene82243 | 0.804883 | 1.74E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene82243 | 0.878147 | 3.55E-69 | -1.69E-46 |
| MS.gene055502 | MS.gene82243 | 0.871205 | 8.16E-67 | -1.69E-46 |
| MS.gene055577 | MS.gene82243 | 0.857415 | 1.66E-62 | -1.69E-46 |
| MS.gene055634 | MS.gene82243 | 0.80941 | 1.92E-50 | -1.69E-46 |
| MS.gene055636 | MS.gene82243 | 0.83217 | 1.10E-55 | -1.69E-46 |
| MS.gene055638 | MS.gene82243 | 0.848386 | 6.34E-60 | -1.69E-46 |
| MS.gene055647 | MS.gene82243 | 0.819528 | 1.11E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene82243 | 0.856079 | 4.10E-62 | -1.69E-46 |
| MS.gene05589 | MS.gene82243 | 0.809102 | 2.23E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene82243 | 0.808593 | 2.87E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene82243 | 0.82969 | 4.47E-55 | -1.69E-46 |
| MS.gene056046 | MS.gene82243 | 0.800676 | 1.29E-48 | -1.69E-46 |
| MS.gene056083 | MS.gene82243 | 0.822338 | 2.50E-53 | -1.69E-46 |
| MS.gene056311 | MS.gene82243 | -0.800439 | 1.44E-48 | -1.69E-46 |
| MS.gene056374 | MS.gene82243 | 0.84187 | 3.66E-58 | -1.69E-46 |
| MS.gene056409 | MS.gene82243 | 0.842533 | 2.44E-58 | -1.69E-46 |
| MS.gene056449 | MS.gene82243 | 0.803961 | 2.72E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene82243 | 0.847622 | 1.03E-59 | -1.69E-46 |
| MS.gene056510 | MS.gene82243 | 0.833995 | 3.87E-56 | -1.69E-46 |
| MS.gene056549 | MS.gene82243 | 0.803757 | 2.99E-49 | -1.69E-46 |
| MS.gene056550 | MS.gene82243 | -0.814747 | 1.32E-51 | -1.69E-46 |
| MS.gene056610 | MS.gene82243 | 0.820869 | 5.46E-53 | -1.69E-46 |
| MS.gene056611 | MS.gene82243 | 0.807018 | 6.20E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene82243 | 0.874116 | 8.68E-68 | -1.69E-46 |
| MS.gene056692 | MS.gene82243 | 0.831692 | 1.45E-55 | -1.69E-46 |
| MS.gene056946 | MS.gene82243 | 0.827244 | 1.74E-54 | -1.69E-46 |
| MS.gene057014 | MS.gene82243 | -0.822604 | 2.17E-53 | -1.69E-46 |
| MS.gene057129 | MS.gene82243 | 0.800415 | 1.46E-48 | -1.69E-46 |
| MS.gene057331 | MS.gene82243 | 0.826113 | 3.24E-54 | -1.69E-46 |
| MS.gene057416 | MS.gene82243 | 0.851013 | 1.17E-60 | -1.69E-46 |
| MS.gene057658 | MS.gene82243 | 0.818183 | 2.24E-52 | -1.69E-46 |
| MS.gene057831 | MS.gene82243 | 0.828482 | 8.77E-55 | -1.69E-46 |
| MS.gene057926 | MS.gene82243 | 0.822796 | 1.96E-53 | -1.69E-46 |
| MS.gene058338 | MS.gene82243 | 0.81902 | 1.45E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene82243 | 0.837886 | 3.99E-57 | -1.69E-46 |
| MS.gene058419 | MS.gene82243 | 0.865579 | 5.33E-65 | -1.69E-46 |
| MS.gene058544 | MS.gene82243 | 0.844597 | 6.85E-59 | -1.69E-46 |
| MS.gene058723 | MS.gene82243 | 0.830835 | 2.35E-55 | -1.69E-46 |
| MS.gene058773 | MS.gene82243 | 0.889759 | 1.82E-73 | -1.69E-46 |
| MS.gene058838 | MS.gene82243 | 0.817735 | 2.83E-52 | -1.69E-46 |
| MS.gene058978 | MS.gene82243 | -0.811186 | 7.94E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene82243 | 0.88426 | 2.23E-71 | -1.69E-46 |
| MS.gene059023 | MS.gene82243 | 0.860079 | 2.65E-63 | -1.69E-46 |
| MS.gene059029 | MS.gene82243 | 0.812453 | 4.21E-51 | -1.69E-46 |
| MS.gene05913 | MS.gene82243 | 0.84699 | 1.53E-59 | -1.69E-46 |
| MS.gene05934 | MS.gene82243 | 0.829755 | 4.31E-55 | -1.69E-46 |
| MS.gene059367 | MS.gene82243 | 0.805721 | 1.16E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene82243 | 0.819631 | 1.05E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene82243 | 0.871886 | 4.85E-67 | -1.69E-46 |
| MS.gene059718 | MS.gene82243 | 0.879002 | 1.78E-69 | -1.69E-46 |
| MS.gene059756 | MS.gene82243 | 0.831002 | 2.14E-55 | -1.69E-46 |
| MS.gene059801 | MS.gene82243 | 0.838766 | 2.37E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene82243 | 0.826953 | 2.04E-54 | -1.69E-46 |
| MS.gene059902 | MS.gene82243 | 0.875139 | 3.90E-68 | -1.69E-46 |
| MS.gene06046 | MS.gene82243 | 0.803028 | 4.24E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene82243 | 0.854441 | 1.23E-61 | -1.69E-46 |
| MS.gene060703 | MS.gene82243 | 0.856589 | 2.90E-62 | -1.69E-46 |
| MS.gene060728 | MS.gene82243 | 0.802006 | 6.88E-49 | -1.69E-46 |
| MS.gene06074 | MS.gene82243 | -0.810245 | 1.27E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene82243 | 0.846122 | 2.65E-59 | -1.69E-46 |
| MS.gene06077 | MS.gene82243 | 0.857516 | 1.55E-62 | -1.69E-46 |
| MS.gene060804 | MS.gene82243 | 0.802967 | 4.36E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene82243 | 0.810505 | 1.11E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene82243 | 0.832618 | 8.53E-56 | -1.69E-46 |
| MS.gene060982 | MS.gene82243 | 0.818372 | 2.03E-52 | -1.69E-46 |
| MS.gene061134 | MS.gene82243 | 0.814524 | 1.47E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene82243 | 0.834078 | 3.69E-56 | -1.69E-46 |
| MS.gene061171 | MS.gene82243 | 0.809236 | 2.09E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene82243 | 0.843297 | 1.53E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82243.t1 | MTR_4g029130 | 93.182 | 88 | 6 | 0 | 1 | 88 | 1 | 88 | 9.07e-55 | 169 |
| MS.gene82243.t1 | MTR_4g029130 | 92.105 | 38 | 3 | 0 | 88 | 125 | 153 | 190 | 1.40e-18 | 77.4 |
| MS.gene82243.t1 | MTR_7g072540 | 64.045 | 89 | 27 | 2 | 1 | 86 | 1 | 87 | 3.36e-31 | 110 |
| MS.gene82243.t1 | MTR_5g083970 | 59.259 | 81 | 26 | 2 | 11 | 85 | 15 | 94 | 6.08e-23 | 89.4 |
| MS.gene82243.t1 | MTR_3g072360 | 52.439 | 82 | 32 | 1 | 11 | 85 | 19 | 100 | 2.45e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTGCAGTTCCATTTGTT+TGG | 0.199775 | 4.2:-74912342 | MS.gene82243:CDS |
| TGTTGCAGTTCCATTTGTTT+GGG | 0.310743 | 4.2:-74912341 | MS.gene82243:CDS |
| GTCTTTAGAGAATGTGTGTT+TGG | 0.374019 | 4.2:+74912300 | None:intergenic |
| CCAACTTCTACTTTGTGCTT+TGG | 0.382263 | 4.2:-74911968 | MS.gene82243:CDS |
| AATGTGTGTTTGGGAGTTCC+AGG | 0.387249 | 4.2:+74912310 | None:intergenic |
| TCTGAAAGATGGGTGACAAT+TGG | 0.414182 | 4.2:+74912369 | None:intergenic |
| CACGCCTCTTGTAGTTACTT+TGG | 0.419541 | 4.2:+74911912 | None:intergenic |
| GATAAGAAGGTGGAGGTGTA+AGG | 0.431589 | 4.2:+74912266 | None:intergenic |
| GTAACTACAAGAGGCGTGTA+AGG | 0.469845 | 4.2:-74911907 | MS.gene82243:CDS |
| ATAAGAAGGTGGAGGTGTAA+GGG | 0.477682 | 4.2:+74912267 | None:intergenic |
| TCTTTAGAGAATGTGTGTTT+GGG | 0.478199 | 4.2:+74912301 | None:intergenic |
| GCAACAGAAACTCTGAAAGA+TGG | 0.487509 | 4.2:+74912358 | None:intergenic |
| GGTTGAGATTCCCAAACAAA+TGG | 0.489006 | 4.2:+74912331 | None:intergenic |
| TTCAGGGGTGAAAATGAAGA+TGG | 0.498666 | 4.2:-74912001 | MS.gene82243:intron |
| TAAGAAGGTGGAGGTGTAAG+GGG | 0.511212 | 4.2:+74912268 | None:intergenic |
| CCAAAGCACAAAGTAGAAGT+TGG | 0.519370 | 4.2:+74911968 | None:intergenic |
| CAACAGAAACTCTGAAAGAT+GGG | 0.528072 | 4.2:+74912359 | None:intergenic |
| TTTCAGCAGACTACTTTCAA+AGG | 0.534157 | 4.2:-74912398 | MS.gene82243:CDS |
| TTTGTTTGGGAATCTCAACC+TGG | 0.562667 | 4.2:-74912328 | MS.gene82243:CDS |
| CGTTCGATCAGCTCGAACAG+TGG | 0.567340 | 4.2:-74911938 | MS.gene82243:CDS |
| GCATTGTTGAAATGATAAGA+AGG | 0.591984 | 4.2:+74912253 | None:intergenic |
| GAAGGTGGAGGTGTAAGGGG+AGG | 0.592725 | 4.2:+74912271 | None:intergenic |
| GCTTCCAAAGTAACTACAAG+AGG | 0.633252 | 4.2:-74911916 | MS.gene82243:CDS |
| TTGTTGAAATGATAAGAAGG+TGG | 0.647192 | 4.2:+74912256 | None:intergenic |
| TTGAAATGATAAGAAGGTGG+AGG | 0.647831 | 4.2:+74912259 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGAAGAAAAATCTTAAGCTT+TGG | - | chr4.2:74912321-74912340 | MS.gene82243:CDS | 25.0% |
| !! | AAAATCTTCCAAGTATCTTT+TGG | - | chr4.2:74912155-74912174 | MS.gene82243:intron | 25.0% |
| !!! | CTTTTTTTCGTTCTTTTTGT+TGG | + | chr4.2:74912130-74912149 | None:intergenic | 25.0% |
| AGATTCTTCCAAAATTACCT+CGG | - | chr4.2:74912281-74912300 | MS.gene82243:CDS | 30.0% | |
| GCATTGTTGAAATGATAAGA+AGG | + | chr4.2:74912108-74912127 | None:intergenic | 30.0% | |
| TGCTTCAAAAACTAAACTTC+AGG | - | chr4.2:74912181-74912200 | MS.gene82243:intron | 30.0% | |
| TTGTTGAAATGATAAGAAGG+TGG | + | chr4.2:74912105-74912124 | None:intergenic | 30.0% | |
| ! | ATTGATGACAATGAAAACGA+AGG | + | chr4.2:74912261-74912280 | None:intergenic | 30.0% |
| ! | TCTTTAGAGAATGTGTGTTT+GGG | + | chr4.2:74912060-74912079 | None:intergenic | 30.0% |
| ! | TTGATGACAATGAAAACGAA+GGG | + | chr4.2:74912260-74912279 | None:intergenic | 30.0% |
| !!! | TGGATCTTCTTTTGATTTCA+GGG | - | chr4.2:74912341-74912360 | MS.gene82243:CDS | 30.0% |
| !!! | TTGGATCTTCTTTTGATTTC+AGG | - | chr4.2:74912340-74912359 | MS.gene82243:CDS | 30.0% |
| AAGCAATGCCAAAAGATACT+TGG | + | chr4.2:74912166-74912185 | None:intergenic | 35.0% | |
| TGTTGCAGTTCCATTTGTTT+GGG | - | chr4.2:74912017-74912036 | MS.gene82243:intron | 35.0% | |
| TTGAAATGATAAGAAGGTGG+AGG | + | chr4.2:74912102-74912121 | None:intergenic | 35.0% | |
| TTTCAGCAGACTACTTTCAA+AGG | - | chr4.2:74911960-74911979 | MS.gene82243:CDS | 35.0% | |
| ! | CAACAGAAACTCTGAAAGAT+GGG | + | chr4.2:74912002-74912021 | None:intergenic | 35.0% |
| ! | GTCTTTAGAGAATGTGTGTT+TGG | + | chr4.2:74912061-74912080 | None:intergenic | 35.0% |
| !!! | GGATCTTCTTTTGATTTCAG+GGG | - | chr4.2:74912342-74912361 | MS.gene82243:CDS | 35.0% |
| CCAAAGCACAAAGTAGAAGT+TGG | + | chr4.2:74912393-74912412 | None:intergenic | 40.0% | |
| CCAACTTCTACTTTGTGCTT+TGG | - | chr4.2:74912390-74912409 | MS.gene82243:CDS | 40.0% | |
| CTGTTGCAGTTCCATTTGTT+TGG | - | chr4.2:74912016-74912035 | MS.gene82243:intron | 40.0% | |
| GCTTCCAAAGTAACTACAAG+AGG | - | chr4.2:74912442-74912461 | MS.gene82243:CDS | 40.0% | |
| GGTTGAGATTCCCAAACAAA+TGG | + | chr4.2:74912030-74912049 | None:intergenic | 40.0% | |
| TCTGAAAGATGGGTGACAAT+TGG | + | chr4.2:74911992-74912011 | None:intergenic | 40.0% | |
| TTCAGGGGTGAAAATGAAGA+TGG | - | chr4.2:74912357-74912376 | MS.gene82243:CDS | 40.0% | |
| TTTGTTTGGGAATCTCAACC+TGG | - | chr4.2:74912030-74912049 | MS.gene82243:intron | 40.0% | |
| ! | ATAAGAAGGTGGAGGTGTAA+GGG | + | chr4.2:74912094-74912113 | None:intergenic | 40.0% |
| ! | GATTTTTCTTCTGCTAACCC+TGG | + | chr4.2:74912313-74912332 | None:intergenic | 40.0% |
| ! | GCAACAGAAACTCTGAAAGA+TGG | + | chr4.2:74912003-74912022 | None:intergenic | 40.0% |
| AATGTGTGTTTGGGAGTTCC+AGG | + | chr4.2:74912051-74912070 | None:intergenic | 45.0% | |
| CACGCCTCTTGTAGTTACTT+TGG | + | chr4.2:74912449-74912468 | None:intergenic | 45.0% | |
| CGATGACAAAGAAGACGATG+AGG | + | chr4.2:74912232-74912251 | None:intergenic | 45.0% | |
| ! | GATAAGAAGGTGGAGGTGTA+AGG | + | chr4.2:74912095-74912114 | None:intergenic | 45.0% |
| ! | GTAACTACAAGAGGCGTGTA+AGG | - | chr4.2:74912451-74912470 | MS.gene82243:CDS | 45.0% |
| ! | TAAGAAGGTGGAGGTGTAAG+GGG | + | chr4.2:74912093-74912112 | None:intergenic | 45.0% |
| AAATTACCTCGGAGACGACC+AGG | - | chr4.2:74912292-74912311 | MS.gene82243:CDS | 50.0% | |
| AATTACCTCGGAGACGACCA+GGG | - | chr4.2:74912293-74912312 | MS.gene82243:CDS | 50.0% | |
| ! | GGTCGTCTCCGAGGTAATTT+TGG | + | chr4.2:74912292-74912311 | None:intergenic | 50.0% |
| AGACGATGAGGACGAAGACG+AGG | + | chr4.2:74912220-74912239 | None:intergenic | 55.0% | |
| CGTTCGATCAGCTCGAACAG+TGG | - | chr4.2:74912420-74912439 | MS.gene82243:CDS | 55.0% | |
| ! | GAAGGTGGAGGTGTAAGGGG+AGG | + | chr4.2:74912090-74912109 | None:intergenic | 60.0% |
| GCTAACCCTGGTCGTCTCCG+AGG | + | chr4.2:74912301-74912320 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 74911904 | 74912476 | 74911904 | ID=MS.gene82243 |
| chr4.2 | mRNA | 74911904 | 74912476 | 74911904 | ID=MS.gene82243.t1;Parent=MS.gene82243 |
| chr4.2 | exon | 74912214 | 74912476 | 74912214 | ID=MS.gene82243.t1.exon1;Parent=MS.gene82243.t1 |
| chr4.2 | CDS | 74912214 | 74912476 | 74912214 | ID=cds.MS.gene82243.t1;Parent=MS.gene82243.t1 |
| chr4.2 | exon | 74911904 | 74912018 | 74911904 | ID=MS.gene82243.t1.exon2;Parent=MS.gene82243.t1 |
| chr4.2 | CDS | 74911904 | 74912018 | 74911904 | ID=cds.MS.gene82243.t1;Parent=MS.gene82243.t1 |
| Gene Sequence |
| Protein sequence |
