AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07708


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07708.t1 MTR_4g055170 94.624 465 24 1 1 464 1 465 0.0 900
MS.gene07708.t1 MTR_3g465980 50.427 468 205 11 6 457 4 460 1.56e-153 444
MS.gene07708.t1 MTR_3g465880 52.688 465 198 12 10 457 8 467 2.56e-153 444
MS.gene07708.t1 MTR_3g465990 50.214 468 206 13 6 457 4 460 5.02e-152 440
MS.gene07708.t1 MTR_3g465930 49.785 466 207 12 10 457 8 464 4.94e-147 428
MS.gene07708.t1 MTR_3g465910 50.649 462 200 13 10 454 8 458 5.40e-146 427
MS.gene07708.t1 MTR_6g053810 46.895 467 227 11 5 456 4 464 8.05e-134 394
MS.gene07708.t1 MTR_3g465950 48.993 447 199 12 10 442 8 439 3.84e-130 384
MS.gene07708.t1 MTR_3g465870 44.563 469 204 11 1 457 1 425 1.47e-116 348
MS.gene07708.t1 MTR_2g015430 32.604 457 273 15 12 454 2 437 4.59e-71 232
MS.gene07708.t1 MTR_3g098980 32.110 436 267 13 18 449 20 430 1.97e-58 199
MS.gene07708.t1 MTR_7g027175 31.729 457 279 15 2 452 7 436 2.16e-57 196
MS.gene07708.t1 MTR_8g096530 31.140 456 286 12 10 461 5 436 2.14e-56 193
MS.gene07708.t1 MTR_1g081660 29.565 460 295 12 1 452 7 445 5.48e-56 192
MS.gene07708.t1 MTR_1g040215 29.018 448 296 10 19 462 16 445 1.61e-52 184
MS.gene07708.t1 MTR_1g053315 30.425 447 281 17 20 451 26 457 2.04e-52 183
MS.gene07708.t1 MTR_5g076700 28.477 453 294 12 19 463 17 447 7.78e-52 182
MS.gene07708.t1 MTR_7g110610 31.514 403 207 12 7 406 2 338 4.54e-51 178
MS.gene07708.t1 MTR_1g040175 30.326 399 259 9 7 401 4 387 6.44e-51 179
MS.gene07708.t1 MTR_3g071320 30.110 455 283 16 11 455 4 433 3.46e-50 177
MS.gene07708.t1 MTR_7g114550 29.771 393 246 11 19 401 17 389 9.61e-48 171
MS.gene07708.t1 MTR_7g114560 29.517 393 247 12 19 401 17 389 2.17e-47 170
MS.gene07708.t1 MTR_7g114520 29.306 447 280 13 19 452 18 441 2.76e-47 169
MS.gene07708.t1 MTR_1g040195 27.009 448 288 8 6 452 3 412 2.45e-46 166
MS.gene07708.t1 MTR_3g112180 27.564 468 280 15 15 462 15 443 1.70e-45 164
MS.gene07708.t1 MTR_7g114470 27.540 443 293 12 19 452 18 441 2.34e-45 164
MS.gene07708.t1 MTR_7g114490 29.517 393 247 11 19 401 17 389 5.52e-45 164
MS.gene07708.t1 MTR_1g040320 29.399 449 265 11 6 452 3 401 1.59e-43 159
MS.gene07708.t1 MTR_8g075610 28.889 450 266 17 19 449 1 415 1.52e-41 153
MS.gene07708.t1 MTR_2g105330 26.889 450 292 16 12 449 3 427 1.21e-40 151
MS.gene07708.t1 MTR_2g064495 26.444 450 294 15 12 449 3 427 2.68e-40 150
MS.gene07708.t1 MTR_4g007540 28.070 456 280 18 12 449 3 428 4.81e-40 149
MS.gene07708.t1 MTR_1g040315 26.846 447 261 11 20 461 17 402 6.34e-39 146
MS.gene07708.t1 MTR_4g097090 28.979 421 257 13 7 401 4 408 1.03e-34 135
MS.gene07708.t1 MTR_7g084940 27.093 454 290 17 8 448 12 437 3.06e-34 133
MS.gene07708.t1 MTR_3g049150 29.630 405 240 16 20 397 10 396 9.90e-34 132
MS.gene07708.t1 MTR_4g127650 29.014 355 238 8 15 363 13 359 2.48e-32 128
MS.gene07708.t1 MTR_7g085930 31.008 387 207 19 10 363 6 365 3.48e-32 128
MS.gene07708.t1 MTR_7g085990 30.670 388 207 20 10 363 2 361 5.78e-31 124
MS.gene07708.t1 MTR_7g056087 26.503 449 284 15 18 447 10 431 1.90e-30 122
MS.gene07708.t1 MTR_3g026950 28.193 415 245 19 20 401 10 404 1.14e-29 120
MS.gene07708.t1 MTR_4g013050 26.770 452 248 16 20 448 12 403 1.70e-28 117
MS.gene07708.t1 MTR_7g086000 26.777 422 253 15 20 405 12 413 2.99e-26 111
MS.gene07708.t1 MTR_3g070170 26.503 449 276 16 41 454 37 466 1.81e-25 108
MS.gene07708.t1 MTR_0502s0010 29.084 251 154 6 106 346 2 238 1.05e-24 102
MS.gene07708.t1 MTR_7g084910 26.531 441 257 17 19 440 24 416 3.17e-24 105
MS.gene07708.t1 MTR_8g079970 26.974 456 275 18 20 455 11 428 2.16e-23 102
MS.gene07708.t1 MTR_3g086020 25.821 457 261 20 19 454 12 411 4.58e-23 101
MS.gene07708.t1 MTR_2g007880 26.151 478 276 19 10 455 15 447 3.86e-22 99.0
MS.gene07708.t1 MTR_4g094835 28.467 274 177 8 69 332 64 328 3.94e-21 95.9
MS.gene07708.t1 MTR_7g114500 36.641 131 81 1 19 149 17 145 1.25e-20 88.6
MS.gene07708.t1 MTR_5g084870 25.918 463 279 18 20 462 11 429 1.67e-20 94.0
MS.gene07708.t1 MTR_3g102020 27.500 280 177 9 69 335 69 335 9.50e-20 92.0
MS.gene07708.t1 MTR_3g101900 27.500 280 177 8 69 335 66 332 9.59e-20 91.7
MS.gene07708.t1 MTR_3g101960 26.786 280 179 8 69 335 68 334 1.18e-19 91.7
MS.gene07708.t1 MTR_0042s0190 27.350 234 158 6 169 401 1 223 1.30e-19 89.4
MS.gene07708.t1 MTR_4g094842 28.767 292 173 11 59 330 52 328 1.92e-19 90.9
MS.gene07708.t1 MTR_3g101930 30.034 293 171 11 59 330 56 335 9.32e-19 89.0
MS.gene07708.t1 MTR_7g114510 25.237 317 197 12 151 452 8 299 1.39e-18 86.7
MS.gene07708.t1 MTR_5g090810 23.778 450 303 16 19 444 17 450 1.48e-18 88.2
MS.gene07708.t1 MTR_0042s0230 34.028 144 93 1 6 149 3 144 1.52e-18 82.8
MS.gene07708.t1 MTR_3g450710 25.946 370 214 14 69 401 65 411 1.70e-18 88.2
MS.gene07708.t1 MTR_4g094832 27.937 315 204 10 97 403 83 382 1.74e-18 87.8
MS.gene07708.t1 MTR_4g022720 29.642 307 179 13 69 354 55 345 3.36e-18 87.0
MS.gene07708.t1 MTR_5g084850 25.482 467 275 19 20 462 11 428 4.66e-18 86.7
MS.gene07708.t1 MTR_5g090830 23.620 453 300 18 19 444 17 450 1.25e-17 85.5
MS.gene07708.t1 MTR_4g022825 28.896 308 185 11 69 354 55 350 1.30e-17 85.1
MS.gene07708.t1 MTR_5g090880 24.227 388 240 12 49 401 46 414 1.61e-17 85.1
MS.gene07708.t1 MTR_4g022760 28.875 329 202 13 69 373 55 375 1.67e-17 84.7
MS.gene07708.t1 MTR_4g022800 28.525 305 191 10 69 354 55 351 2.78e-17 84.3
MS.gene07708.t1 MTR_3g102010 26.056 284 180 8 69 335 65 335 3.36e-17 84.0
MS.gene07708.t1 MTR_4g094838 24.789 355 213 9 69 403 64 384 3.37e-17 84.0
MS.gene07708.t1 MTR_3g450690 25.068 367 218 13 69 401 72 415 9.46e-17 82.8
MS.gene07708.t1 MTR_7g114960 23.797 374 241 15 10 367 8 353 1.08e-16 82.4
MS.gene07708.t1 MTR_3g088420 25.490 306 193 10 69 355 55 344 2.13e-16 81.6
MS.gene07708.t1 MTR_3g051790 38.211 123 66 4 19 137 20 136 2.15e-16 77.4
MS.gene07708.t1 MTR_8g041770 26.101 318 208 9 49 354 48 350 2.61e-16 81.3
MS.gene07708.t1 MTR_3g026310 27.414 321 180 11 69 357 55 354 5.43e-16 80.5
MS.gene07708.t1 MTR_8g039950 39.604 101 55 2 20 118 17 113 6.46e-16 74.7
MS.gene07708.t1 MTR_4g022670 28.197 305 192 11 69 354 55 351 6.97e-16 80.1
MS.gene07708.t1 MTR_8g079980 24.891 458 281 19 20 455 11 427 1.42e-15 79.0
MS.gene07708.t1 MTR_4g094828 24.716 352 239 12 69 403 59 401 1.63e-15 79.0
MS.gene07708.t1 MTR_0190s0020 26.882 279 184 8 61 330 55 322 5.40e-15 77.4
MS.gene07708.t1 MTR_4g022290 24.727 275 188 7 69 332 60 326 1.24e-13 73.2
MS.gene07708.t1 MTR_3g049140 29.609 179 107 7 232 397 21 193 1.57e-13 70.9
MS.gene07708.t1 MTR_8g079950 24.459 462 279 19 20 455 11 428 1.72e-13 72.8
MS.gene07708.t1 MTR_5g026320 23.514 387 259 15 25 397 33 396 2.73e-13 72.0
MS.gene07708.t1 MTR_7g026860 26.885 305 196 10 69 354 55 351 1.45e-12 69.7
MS.gene07708.t1 MTR_8g040780 31.061 132 77 3 228 354 16 138 2.87e-12 67.0
MS.gene07708.t1 MTR_1g011660 23.003 313 223 10 19 325 13 313 1.59e-11 66.6
MS.gene07708.t1 MTR_7g014200 23.404 423 278 16 58 447 51 460 7.77e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07708.t1 AT5G07080 46.507 458 205 13 10 451 12 445 1.03e-127 378
MS.gene07708.t1 AT2G25150 43.043 460 250 7 1 455 1 453 1.49e-118 355
MS.gene07708.t1 AT2G23510 43.018 444 234 10 19 455 20 451 1.86e-116 349
MS.gene07708.t1 AT3G47170 41.719 477 239 15 1 452 1 463 3.32e-110 334
MS.gene07708.t1 AT1G28680 35.230 457 263 16 11 452 3 441 2.52e-86 272
MS.gene07708.t1 AT1G28680 35.248 383 220 13 11 381 3 369 9.55e-71 229
MS.gene07708.t1 AT5G41040 32.018 456 278 14 7 456 12 441 8.12e-65 216
MS.gene07708.t1 AT5G41040 32.018 456 278 14 7 456 28 457 1.16e-64 216
MS.gene07708.t1 AT3G03480 30.519 462 284 14 2 451 9 445 1.87e-57 196
MS.gene07708.t1 AT5G17540 30.586 461 278 16 7 452 4 437 8.78e-57 195
MS.gene07708.t1 AT3G62160 30.508 413 238 11 8 406 1 378 1.15e-55 191
MS.gene07708.t1 AT3G48720 30.227 440 275 16 19 452 16 429 7.06e-55 189
MS.gene07708.t1 AT5G63560 30.752 452 277 15 7 452 4 425 7.07e-55 189
MS.gene07708.t1 AT1G27620 28.281 442 278 12 18 451 15 425 2.60e-47 169
MS.gene07708.t1 AT1G03390 26.724 464 303 18 2 447 7 451 1.01e-44 162
MS.gene07708.t1 AT2G40230 28.381 451 279 17 12 448 5 425 3.12e-42 155
MS.gene07708.t1 AT5G48930 27.857 420 270 16 10 414 1 402 2.60e-37 142
MS.gene07708.t1 AT1G65450 28.419 468 273 20 10 452 16 446 4.77e-34 133
MS.gene07708.t1 AT5G57840 27.094 406 260 15 10 397 1 388 3.90e-31 125
MS.gene07708.t1 AT2G19070 25.821 457 293 16 20 451 12 447 2.47e-27 114
MS.gene07708.t1 AT4G31910 28.763 372 218 13 29 370 28 382 1.14e-25 109
MS.gene07708.t1 AT4G15390 24.416 471 297 18 6 454 2 435 1.25e-24 106
MS.gene07708.t1 AT4G15390 24.416 471 297 18 6 454 2 435 1.25e-24 106
MS.gene07708.t1 AT1G24430 25.063 399 249 16 69 455 62 422 1.94e-22 99.8
MS.gene07708.t1 AT3G26040 24.236 458 295 20 19 460 10 431 3.25e-22 99.4
MS.gene07708.t1 AT3G50280 26.098 387 240 15 69 425 59 429 1.67e-21 97.1
MS.gene07708.t1 AT5G07860 29.323 266 149 9 69 316 72 316 2.22e-21 96.7
MS.gene07708.t1 AT3G30280 23.932 468 288 17 19 460 13 438 2.87e-20 93.6
MS.gene07708.t1 AT5G07870 28.889 270 153 11 69 315 72 325 1.03e-18 89.0
MS.gene07708.t1 AT1G31490 25.693 397 248 15 19 397 13 380 1.84e-18 87.8
MS.gene07708.t1 AT1G78990 25.377 398 257 15 69 450 67 440 5.96e-18 86.7
MS.gene07708.t1 AT5G07850 28.679 265 163 8 69 320 70 321 9.43e-18 85.9
MS.gene07708.t1 AT5G47980 25.367 477 281 21 8 454 1 432 9.51e-18 85.9
MS.gene07708.t1 AT1G32910 25.310 403 264 16 66 450 62 445 1.50e-17 85.1
MS.gene07708.t1 AT5G67150 24.279 416 271 13 62 455 50 443 1.88e-17 84.7
MS.gene07708.t1 AT5G42830 26.552 290 183 10 69 341 64 340 5.04e-17 83.6
MS.gene07708.t1 AT3G50270 25.762 361 232 15 69 409 62 406 1.67e-15 79.0
MS.gene07708.t1 AT5G67160 28.364 275 170 12 69 330 56 316 2.00e-15 78.6
MS.gene07708.t1 AT3G50280 26.537 309 191 11 138 425 6 299 2.01e-15 77.4
MS.gene07708.t1 AT1G24420 26.726 449 283 23 19 455 12 426 5.74e-15 77.0
MS.gene07708.t1 AT1G24420 26.726 449 283 23 19 455 12 426 5.74e-15 77.0
MS.gene07708.t1 AT5G47950 24.890 454 272 20 19 454 13 415 6.06e-14 73.9
MS.gene07708.t1 AT3G29635 27.799 259 172 8 72 317 70 326 7.45e-14 73.9
MS.gene07708.t1 AT5G01210 23.844 411 272 13 83 463 76 475 1.06e-13 73.6
MS.gene07708.t1 AT5G23940 24.214 318 210 10 20 316 11 318 8.92e-13 70.5
MS.gene07708.t1 AT5G38130 23.848 369 245 12 49 397 55 407 1.56e-11 66.6
MS.gene07708.t1 AT5G61160 25.879 313 203 11 149 447 145 442 2.69e-11 65.9
MS.gene07708.t1 AT3G50300 25.949 316 204 13 69 370 59 358 5.90e-11 64.7

Find 95 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCAATGGCTAAGTTTA+AGG 0.175686 4.1:+43095248 MS.gene07708:CDS
CCTTTGCATGAAGGTTATTA+TGG 0.209215 4.1:+43094847 MS.gene07708:CDS
AACTTAGCCATTGAAGCTTT+TGG 0.251306 4.1:-43095243 None:intergenic
CTTTGTGGTGGTTTCACAAT+TGG 0.270838 4.1:+43094388 MS.gene07708:CDS
TAATGAGGAAAGGGAATATA+AGG 0.273542 4.1:+43095016 MS.gene07708:CDS
GTATACTATTATCCTCTTGC+AGG 0.282976 4.1:+43094157 MS.gene07708:CDS
TTGTTGCAAGAAGTTGATTT+TGG 0.295712 4.1:+43095090 MS.gene07708:CDS
AACCATCTTTAAAACCTGTT+TGG 0.297304 4.1:+43094497 MS.gene07708:CDS
CATAGTGTTTGTGATGGTTT+TGG 0.306157 4.1:+43094424 MS.gene07708:CDS
TAAATGGTGAAACTATAAAA+AGG 0.324098 4.1:+43094647 MS.gene07708:CDS
CATCAACTTTCATGACCTTA+AGG 0.330136 4.1:-43095284 None:intergenic
ACCATCTTTAAAACCTGTTT+GGG 0.340842 4.1:+43094498 MS.gene07708:CDS
CCTGTTCCTTGGAACATGTT+TGG 0.361072 4.1:+43095138 MS.gene07708:CDS
TCATGTGAAATTTCTTTAGT+TGG 0.361629 4.1:-43094613 None:intergenic
TGGCGATGGAGTTCCATTCT+TGG 0.362672 4.1:+43094225 MS.gene07708:CDS
GGCTTCAAATGTGATATTAA+AGG 0.373288 4.1:+43094882 MS.gene07708:CDS
CTTCAATGAAAGGAGGAGTT+AGG 0.389486 4.1:+43095205 MS.gene07708:CDS
AAACACTTGGTGCATATGTT+TGG 0.389650 4.1:+43094737 MS.gene07708:CDS
TTAGCATTTGATTCCAAGAA+TGG 0.389942 4.1:-43094238 None:intergenic
TCATTTGGGATATCAAGATT+TGG 0.398897 4.1:-43094085 None:intergenic
AATTTCAGAAGGTGTGGGCT+TGG 0.400306 4.1:-43093993 None:intergenic
TGGCAGAGAATGTTGATGTT+AGG 0.405640 4.1:-43094043 None:intergenic
TCTTCCCTTCATTATCTTGA+AGG 0.406389 4.1:+43094271 MS.gene07708:CDS
GTTTGTAGACATAAATTGTT+TGG 0.413551 4.1:-43094063 None:intergenic
CCAAACTAGTCCTCACCCTT+TGG 0.414034 4.1:+43094345 MS.gene07708:CDS
ATTGAAGAATCCAACTTACT+TGG 0.421620 4.1:-43095189 None:intergenic
GGAGGAGATGGAATTCCTTA+AGG 0.425685 4.1:+43095269 MS.gene07708:CDS
CCAAAGGGTGAGGACTAGTT+TGG 0.426306 4.1:-43094345 None:intergenic
ACACTTGATGATGGAAAACT+TGG 0.434055 4.1:+43094190 MS.gene07708:CDS
CTTCCCTTCATTATCTTGAA+GGG 0.438956 4.1:+43094272 MS.gene07708:CDS
GCTTTGAAATTGAACAATGA+TGG 0.441181 4.1:+43094775 MS.gene07708:CDS
GTCACTTCCAAAAGCTTCAA+TGG 0.442559 4.1:+43095236 MS.gene07708:CDS
CATCATTGGTGTTAACTGAT+TGG 0.443121 4.1:+43095055 MS.gene07708:CDS
AGAAGCACTCTCAAAAGCTT+TGG 0.444830 4.1:+43094135 MS.gene07708:CDS
TGTTGGAGATAATGAGGAAA+GGG 0.449792 4.1:+43095007 MS.gene07708:CDS
TGAAGGAACTGGTGCATCAT+TGG 0.453829 4.1:+43095041 MS.gene07708:CDS
CCAAACATGTTCCAAGGAAC+AGG 0.453944 4.1:-43095138 None:intergenic
TGTCCTTGGTATCAAGACTA+AGG 0.469953 4.1:-43093952 None:intergenic
TTCAGAAGGTGTGGGCTTGG+AGG 0.471820 4.1:-43093990 None:intergenic
TGAATATTGTGCCTGTTCCT+TGG 0.474624 4.1:+43095127 MS.gene07708:CDS
AGTAGGGGTGAGAAAACTAT+TGG 0.476715 4.1:+43094819 MS.gene07708:CDS
TCAGAAGGTGTGGGCTTGGA+GGG 0.480591 4.1:-43093989 None:intergenic
GGCTAAGTTTAAGGAGGAGA+TGG 0.481711 4.1:+43095257 MS.gene07708:CDS
TTTAACAATCACAATGTCCT+TGG 0.490781 4.1:-43093966 None:intergenic
AACTGCGAAAAGTACTCTTA+AGG 0.492391 4.1:+43094534 MS.gene07708:CDS
AAAGGGAATATAAGGGTTGA+AGG 0.493013 4.1:+43095024 MS.gene07708:CDS
GAAGAATCCAACTTACTTGG+AGG 0.494568 4.1:-43095186 None:intergenic
AATATAAGGGTTGAAGGAAC+TGG 0.495175 4.1:+43095030 MS.gene07708:CDS
CAATCCCTTCAAGATAATGA+AGG 0.502121 4.1:-43094276 None:intergenic
GTTGTTATCTTTCCTGCAAG+AGG 0.504380 4.1:-43094169 None:intergenic
TTGGATCCACCTTTGCATGA+AGG 0.506278 4.1:+43094838 MS.gene07708:CDS
CTTTGAAATTGAACAATGAT+GGG 0.507979 4.1:+43094776 MS.gene07708:CDS
TGGTATCAAGACTAAGGGAC+AGG 0.508284 4.1:-43093946 None:intergenic
AAGATAACAACACTTGATGA+TGG 0.511868 4.1:+43094181 MS.gene07708:CDS
TTATCTATGAGAAATTGAAA+TGG 0.516169 4.1:-43094562 None:intergenic
TTAACTGATTGGAGACAACT+TGG 0.516863 4.1:+43095066 MS.gene07708:CDS
TGGTGGTTTCACAATTGGAA+TGG 0.517210 4.1:+43094393 MS.gene07708:CDS
GGTGGTTTCACAATTGGAAT+GGG 0.521542 4.1:+43094394 MS.gene07708:CDS
GCTTCTTTGATTACACAAGC+AGG 0.523958 4.1:-43094118 None:intergenic
TTCACAACACTTGAAACACT+TGG 0.527865 4.1:+43094724 MS.gene07708:CDS
TTAACATGTTGGAGATAATG+AGG 0.531085 4.1:+43095001 MS.gene07708:CDS
GACTAGTTTGGTCTTGAGAA+GGG 0.532076 4.1:-43094333 None:intergenic
GTGACAAAGTTTCTTTGTGG+TGG 0.537857 4.1:+43094376 MS.gene07708:CDS
GGACTAGTTTGGTCTTGAGA+AGG 0.542115 4.1:-43094334 None:intergenic
GATGTTAGGATCATTGTCAA+TGG 0.543218 4.1:-43094029 None:intergenic
CACTTGGTGCATATGTTTGG+AGG 0.543669 4.1:+43094740 MS.gene07708:CDS
TGAAAGAATTTCAGAAGGTG+TGG 0.544259 4.1:-43093999 None:intergenic
AATGAGGAAAGGGAATATAA+GGG 0.546323 4.1:+43095017 MS.gene07708:CDS
TTTATATATTCATTATTCAA+AGG 0.553206 4.1:-43094970 None:intergenic
GCTCAAAATGAAACTAATGA+AGG 0.557505 4.1:+43094669 MS.gene07708:CDS
TTGTCACCTTGAAAACCAAA+GGG 0.559737 4.1:-43094360 None:intergenic
TTGTCACATAGTGTTTGTGA+TGG 0.560052 4.1:+43094418 MS.gene07708:CDS
CCATAATAACCTTCATGCAA+AGG 0.562738 4.1:-43094847 None:intergenic
CTTCTTTGATTACACAAGCA+GGG 0.565435 4.1:-43094117 None:intergenic
TTTGTCACCTTGAAAACCAA+AGG 0.566276 4.1:-43094361 None:intergenic
AAGTTGGATTCTTCAATGAA+AGG 0.570860 4.1:+43095195 MS.gene07708:CDS
AAGGTGACAAAGTTTCTTTG+TGG 0.576628 4.1:+43094373 MS.gene07708:CDS
GAAAGAATTTCAGAAGGTGT+GGG 0.577947 4.1:-43093998 None:intergenic
GTCCTTGGTATCAAGACTAA+GGG 0.578066 4.1:-43093951 None:intergenic
GGAATCAATTGCAATGGCGA+TGG 0.585619 4.1:+43094211 MS.gene07708:CDS
AAACTTGGAATCAATTGCAA+TGG 0.591942 4.1:+43094205 MS.gene07708:CDS
GCACTTGCTGAACTTGCAAG+TGG 0.593556 4.1:+43094466 MS.gene07708:CDS
ACCTTGAAAACCAAAGGGTG+AGG 0.593623 4.1:-43094355 None:intergenic
ATGTTGGAGATAATGAGGAA+AGG 0.596819 4.1:+43095006 MS.gene07708:CDS
AATCCCTTCAAGATAATGAA+GGG 0.597371 4.1:-43094275 None:intergenic
TTCAATGGCTAAGTTTAAGG+AGG 0.601083 4.1:+43095251 MS.gene07708:CDS
TGCATATGTTTGGAGGTCAA+AGG 0.601874 4.1:+43094747 MS.gene07708:CDS
TAATAACCTTCATGCAAAGG+TGG 0.605526 4.1:-43094844 None:intergenic
GTCCCTTAGTCTTGATACCA+AGG 0.611096 4.1:+43093949 MS.gene07708:CDS
ACAAAACCAAACATGTTCCA+AGG 0.619930 4.1:-43095144 None:intergenic
GTTAGGATCATTGTCAATGG+TGG 0.626574 4.1:-43094026 None:intergenic
TTGGATTCTTCAATGAAAGG+AGG 0.629656 4.1:+43095198 MS.gene07708:CDS
GAAAGTGAAAGAATTTCAGA+AGG 0.631868 4.1:-43094004 None:intergenic
TGATGATGATAATGTGACGA+AGG 0.656092 4.1:+43094696 MS.gene07708:CDS
GGTATCAAGACTAAGGGACA+GGG 0.686582 4.1:-43093945 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATTCATTATTCAA+AGG - chr4.1:43094973-43094992 None:intergenic 10.0%
!! AAAAAATTCAATTAACATGT+TGG + chr4.1:43094990-43095009 MS.gene07708:CDS 15.0%
!! TAAATGGTGAAACTATAAAA+AGG + chr4.1:43094647-43094666 MS.gene07708:CDS 20.0%
!! TTATCTATGAGAAATTGAAA+TGG - chr4.1:43094565-43094584 None:intergenic 20.0%
!!! ATTTCTTTAGTTGGTAAAAA+AGG - chr4.1:43094607-43094626 None:intergenic 20.0%
!!! CATGAATGTTTTAACTTAAA+TGG + chr4.1:43094631-43094650 MS.gene07708:CDS 20.0%
! GTTTGTAGACATAAATTGTT+TGG - chr4.1:43094066-43094085 None:intergenic 25.0%
! TCATGTGAAATTTCTTTAGT+TGG - chr4.1:43094616-43094635 None:intergenic 25.0%
!!! CTTTGAAATTGAACAATGAT+GGG + chr4.1:43094776-43094795 MS.gene07708:CDS 25.0%
AAACTTGGAATCAATTGCAA+TGG + chr4.1:43094205-43094224 MS.gene07708:CDS 30.0%
AAGATAACAACACTTGATGA+TGG + chr4.1:43094181-43094200 MS.gene07708:CDS 30.0%
AAGTTGGATTCTTCAATGAA+AGG + chr4.1:43095195-43095214 MS.gene07708:CDS 30.0%
AATCCCTTCAAGATAATGAA+GGG - chr4.1:43094278-43094297 None:intergenic 30.0%
AATGAGGAAAGGGAATATAA+GGG + chr4.1:43095017-43095036 MS.gene07708:CDS 30.0%
ATTGAAGAATCCAACTTACT+TGG - chr4.1:43095192-43095211 None:intergenic 30.0%
GAAAGTGAAAGAATTTCAGA+AGG - chr4.1:43094007-43094026 None:intergenic 30.0%
GCTCAAAATGAAACTAATGA+AGG + chr4.1:43094669-43094688 MS.gene07708:CDS 30.0%
GGCTTCAAATGTGATATTAA+AGG + chr4.1:43094882-43094901 MS.gene07708:CDS 30.0%
TAATGAGGAAAGGGAATATA+AGG + chr4.1:43095016-43095035 MS.gene07708:CDS 30.0%
TTAACATGTTGGAGATAATG+AGG + chr4.1:43095001-43095020 MS.gene07708:CDS 30.0%
TTAGCATTTGATTCCAAGAA+TGG - chr4.1:43094241-43094260 None:intergenic 30.0%
TTTAACAATCACAATGTCCT+TGG - chr4.1:43093969-43093988 None:intergenic 30.0%
! TCATTTGGGATATCAAGATT+TGG - chr4.1:43094088-43094107 None:intergenic 30.0%
! TTATTATGGCAATGCTTTTG+TGG + chr4.1:43094861-43094880 MS.gene07708:CDS 30.0%
!! AACCATCTTTAAAACCTGTT+TGG + chr4.1:43094497-43094516 MS.gene07708:CDS 30.0%
!! ACCATCTTTAAAACCTGTTT+GGG + chr4.1:43094498-43094517 MS.gene07708:CDS 30.0%
!! GCTTTGAAATTGAACAATGA+TGG + chr4.1:43094775-43094794 MS.gene07708:CDS 30.0%
!! TTGTTGCAAGAAGTTGATTT+TGG + chr4.1:43095090-43095109 MS.gene07708:CDS 30.0%
!!! ACTATGTTTTGTTTAGCAGT+AGG + chr4.1:43094802-43094821 MS.gene07708:CDS 30.0%
!!! CTATGTTTTGTTTAGCAGTA+GGG + chr4.1:43094803-43094822 MS.gene07708:CDS 30.0%
!!! TATGTTTTGTTTAGCAGTAG+GGG + chr4.1:43094804-43094823 MS.gene07708:CDS 30.0%
AAAGGGAATATAAGGGTTGA+AGG + chr4.1:43095024-43095043 MS.gene07708:CDS 35.0%
AAGGTGACAAAGTTTCTTTG+TGG + chr4.1:43094373-43094392 MS.gene07708:CDS 35.0%
AATATAAGGGTTGAAGGAAC+TGG + chr4.1:43095030-43095049 MS.gene07708:CDS 35.0%
ACAAAACCAAACATGTTCCA+AGG - chr4.1:43095147-43095166 None:intergenic 35.0%
ACTTACTTGGAGGCAAAAAA+AGG - chr4.1:43095179-43095198 None:intergenic 35.0%
AGCTTCAATGGCTAAGTTTA+AGG + chr4.1:43095248-43095267 MS.gene07708:CDS 35.0%
AGCTTCACAACTTCAAAAAG+TGG - chr4.1:43094928-43094947 None:intergenic 35.0%
ATGTTGGAGATAATGAGGAA+AGG + chr4.1:43095006-43095025 MS.gene07708:CDS 35.0%
CAATCCCTTCAAGATAATGA+AGG - chr4.1:43094279-43094298 None:intergenic 35.0%
CATCAACTTTCATGACCTTA+AGG - chr4.1:43095287-43095306 None:intergenic 35.0%
CCATAATAACCTTCATGCAA+AGG - chr4.1:43094850-43094869 None:intergenic 35.0%
CCTTTGCATGAAGGTTATTA+TGG + chr4.1:43094847-43094866 MS.gene07708:CDS 35.0%
CTTCCCTTCATTATCTTGAA+GGG + chr4.1:43094272-43094291 MS.gene07708:CDS 35.0%
CTTCTTTGATTACACAAGCA+GGG - chr4.1:43094120-43094139 None:intergenic 35.0%
GATGTTAGGATCATTGTCAA+TGG - chr4.1:43094032-43094051 None:intergenic 35.0%
GTATACTATTATCCTCTTGC+AGG + chr4.1:43094157-43094176 MS.gene07708:CDS 35.0%
TAATAACCTTCATGCAAAGG+TGG - chr4.1:43094847-43094866 None:intergenic 35.0%
TCTTCCCTTCATTATCTTGA+AGG + chr4.1:43094271-43094290 MS.gene07708:CDS 35.0%
TGAAAGAATTTCAGAAGGTG+TGG - chr4.1:43094002-43094021 None:intergenic 35.0%
TGTTCCAACAGCACAAAAAT+TGG + chr4.1:43094300-43094319 MS.gene07708:CDS 35.0%
TGTTGGAGATAATGAGGAAA+GGG + chr4.1:43095007-43095026 MS.gene07708:CDS 35.0%
TTAACTGATTGGAGACAACT+TGG + chr4.1:43095066-43095085 MS.gene07708:CDS 35.0%
TTCAATGGCTAAGTTTAAGG+AGG + chr4.1:43095251-43095270 MS.gene07708:CDS 35.0%
TTCACAACACTTGAAACACT+TGG + chr4.1:43094724-43094743 MS.gene07708:CDS 35.0%
TTGGATTCTTCAATGAAAGG+AGG + chr4.1:43095198-43095217 MS.gene07708:CDS 35.0%
TTGTCACATAGTGTTTGTGA+TGG + chr4.1:43094418-43094437 MS.gene07708:CDS 35.0%
TTGTCACCTTGAAAACCAAA+GGG - chr4.1:43094363-43094382 None:intergenic 35.0%
TTTGTCACCTTGAAAACCAA+AGG - chr4.1:43094364-43094383 None:intergenic 35.0%
! AACACCAATTTTTGTGCTGT+TGG - chr4.1:43094307-43094326 None:intergenic 35.0%
! AACTTAGCCATTGAAGCTTT+TGG - chr4.1:43095246-43095265 None:intergenic 35.0%
! CATAGTGTTTGTGATGGTTT+TGG + chr4.1:43094424-43094443 MS.gene07708:CDS 35.0%
! GAAAGAATTTCAGAAGGTGT+GGG - chr4.1:43094001-43094020 None:intergenic 35.0%
! TGATGATGATAATGTGACGA+AGG + chr4.1:43094696-43094715 MS.gene07708:CDS 35.0%
!! AAACACTTGGTGCATATGTT+TGG + chr4.1:43094737-43094756 MS.gene07708:CDS 35.0%
!! AACTGCGAAAAGTACTCTTA+AGG + chr4.1:43094534-43094553 MS.gene07708:CDS 35.0%
!! ACACTTGATGATGGAAAACT+TGG + chr4.1:43094190-43094209 MS.gene07708:CDS 35.0%
!! AGAAGTTGATTTTGGATGGA+AGG + chr4.1:43095098-43095117 MS.gene07708:CDS 35.0%
!! CATCATTGGTGTTAACTGAT+TGG + chr4.1:43095055-43095074 MS.gene07708:CDS 35.0%
!! TGCAAGAAGTTGATTTTGGA+TGG + chr4.1:43095094-43095113 MS.gene07708:CDS 35.0%
!!! TCCCAAACAGGTTTTAAAGA+TGG - chr4.1:43094502-43094521 None:intergenic 35.0%
!!! TTGGAACATGTTTGGTTTTG+TGG + chr4.1:43095146-43095165 MS.gene07708:CDS 35.0%
!!! TTTTTTGCCTCCAAGTAAGT+TGG + chr4.1:43095179-43095198 MS.gene07708:CDS 35.0%
AGTAGGGGTGAGAAAACTAT+TGG + chr4.1:43094819-43094838 MS.gene07708:CDS 40.0%
CTTCAATGAAAGGAGGAGTT+AGG + chr4.1:43095205-43095224 MS.gene07708:CDS 40.0%
CTTTGTGGTGGTTTCACAAT+TGG + chr4.1:43094388-43094407 MS.gene07708:CDS 40.0%
GAAGAATCCAACTTACTTGG+AGG - chr4.1:43095189-43095208 None:intergenic 40.0%
GCTTCTTTGATTACACAAGC+AGG - chr4.1:43094121-43094140 None:intergenic 40.0%
GGTGGTTTCACAATTGGAAT+GGG + chr4.1:43094394-43094413 MS.gene07708:CDS 40.0%
GTCACTTCCAAAAGCTTCAA+TGG + chr4.1:43095236-43095255 MS.gene07708:CDS 40.0%
GTCCTTGGTATCAAGACTAA+GGG - chr4.1:43093954-43093973 None:intergenic 40.0%
GTGACAAAGTTTCTTTGTGG+TGG + chr4.1:43094376-43094395 MS.gene07708:CDS 40.0%
GTTAGGATCATTGTCAATGG+TGG - chr4.1:43094029-43094048 None:intergenic 40.0%
GTTGTTATCTTTCCTGCAAG+AGG - chr4.1:43094172-43094191 None:intergenic 40.0%
TGAATATTGTGCCTGTTCCT+TGG + chr4.1:43095127-43095146 MS.gene07708:CDS 40.0%
TGCATATGTTTGGAGGTCAA+AGG + chr4.1:43094747-43094766 MS.gene07708:CDS 40.0%
TGGCAGAGAATGTTGATGTT+AGG - chr4.1:43094046-43094065 None:intergenic 40.0%
TGGTGGTTTCACAATTGGAA+TGG + chr4.1:43094393-43094412 MS.gene07708:CDS 40.0%
TGTCCTTGGTATCAAGACTA+AGG - chr4.1:43093955-43093974 None:intergenic 40.0%
! TTACACAAGCAGGGTCTTTT+TGG - chr4.1:43094111-43094130 None:intergenic 40.0%
!! AGAAGCACTCTCAAAAGCTT+TGG + chr4.1:43094135-43094154 MS.gene07708:CDS 40.0%
!! CAGGGTCTTTTTGGTCATTT+GGG - chr4.1:43094102-43094121 None:intergenic 40.0%
!! GACTAGTTTGGTCTTGAGAA+GGG - chr4.1:43094336-43094355 None:intergenic 40.0%
AATCTCTCTCTCTCCCAAAC+AGG - chr4.1:43094514-43094533 None:intergenic 45.0%
ACCTTGAAAACCAAAGGGTG+AGG - chr4.1:43094358-43094377 None:intergenic 45.0%
CCAAACATGTTCCAAGGAAC+AGG - chr4.1:43095141-43095160 None:intergenic 45.0%
CCTGTTCCTTGGAACATGTT+TGG + chr4.1:43095138-43095157 MS.gene07708:CDS 45.0%
GGAATCAATTGCAATGGCGA+TGG + chr4.1:43094211-43094230 MS.gene07708:CDS 45.0%
GGAGGAGATGGAATTCCTTA+AGG + chr4.1:43095269-43095288 MS.gene07708:CDS 45.0%
GGCTAAGTTTAAGGAGGAGA+TGG + chr4.1:43095257-43095276 MS.gene07708:CDS 45.0%
GGTATCAAGACTAAGGGACA+GGG - chr4.1:43093948-43093967 None:intergenic 45.0%
TGAAGGAACTGGTGCATCAT+TGG + chr4.1:43095041-43095060 MS.gene07708:CDS 45.0%
TGGTATCAAGACTAAGGGAC+AGG - chr4.1:43093949-43093968 None:intergenic 45.0%
TTGGATCCACCTTTGCATGA+AGG + chr4.1:43094838-43094857 MS.gene07708:CDS 45.0%
! AATTTCAGAAGGTGTGGGCT+TGG - chr4.1:43093996-43094015 None:intergenic 45.0%
!! CACTTGGTGCATATGTTTGG+AGG + chr4.1:43094740-43094759 MS.gene07708:CDS 45.0%
!! GCAGGGTCTTTTTGGTCATT+TGG - chr4.1:43094103-43094122 None:intergenic 45.0%
!! GGACTAGTTTGGTCTTGAGA+AGG - chr4.1:43094337-43094356 None:intergenic 45.0%
!! GTCCCTTAGTCTTGATACCA+AGG + chr4.1:43093949-43093968 MS.gene07708:CDS 45.0%
!!! TCCTCACCCTTTGGTTTTCA+AGG + chr4.1:43094354-43094373 MS.gene07708:CDS 45.0%
CCAAACTAGTCCTCACCCTT+TGG + chr4.1:43094345-43094364 MS.gene07708:CDS 50.0%
TGGCGATGGAGTTCCATTCT+TGG + chr4.1:43094225-43094244 MS.gene07708:CDS 50.0%
! GCACTTGCTGAACTTGCAAG+TGG + chr4.1:43094466-43094485 MS.gene07708:CDS 50.0%
!! CCAAAGGGTGAGGACTAGTT+TGG - chr4.1:43094348-43094367 None:intergenic 50.0%
! TCAGAAGGTGTGGGCTTGGA+GGG - chr4.1:43093992-43094011 None:intergenic 55.0%
! TTCAGAAGGTGTGGGCTTGG+AGG - chr4.1:43093993-43094012 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 43093926 43095320 43093926 ID=MS.gene07708
chr4.1 mRNA 43093926 43095320 43093926 ID=MS.gene07708.t1;Parent=MS.gene07708
chr4.1 exon 43093926 43095320 43093926 ID=MS.gene07708.t1.exon1;Parent=MS.gene07708.t1
chr4.1 CDS 43093926 43095320 43093926 ID=cds.MS.gene07708.t1;Parent=MS.gene07708.t1
Gene Sequence

>MS.gene07708

ATGGAAAATCACAAGAAATCCCTGTCCCTTAGTCTTGATACCAAGGACATTGTGATTGTTAAACCCTCCAAGCCCACACCTTCTGAAATTCTTTCACTTTCCACCATTGACAATGATCCTAACATCAACATTCTCTGCCAAACAATTTATGTCTACAAACCAAATCTTGATATCCCAAATGACCAAAAAGACCCTGCTTGTGTAATCAAAGAAGCACTCTCAAAAGCTTTGGTATACTATTATCCTCTTGCAGGAAAGATAACAACACTTGATGATGGAAAACTTGGAATCAATTGCAATGGCGATGGAGTTCCATTCTTGGAATCAAATGCTAATTGTGAACTCTCTTCCCTTCATTATCTTGAAGGGATTGATGTTCCAACAGCACAAAAATTGGTGTTTGATAACCCTTCTCAAGACCAAACTAGTCCTCACCCTTTGGTTTTCAAGGTGACAAAGTTTCTTTGTGGTGGTTTCACAATTGGAATGGGATTGTCACATAGTGTTTGTGATGGTTTTGGTGCATCTCAATTCTATAGAGCACTTGCTGAACTTGCAAGTGGAAAAAATGAACCATCTTTAAAACCTGTTTGGGAGAGAGAGAGATTAACTGCGAAAAGTACTCTTAAGGAACAACCATTTCAATTTCTCATAGATAAGACTTCAATAGCAACTTCACCTTTTTTACCAACTAAAGAAATTTCACATGAATGTTTTAACTTAAATGGTGAAACTATAAAAAGGCTCAAAATGAAACTAATGAAGGAAAGTGATGATGATAATGTGACGAAGGAAAGTTTCACAACACTTGAAACACTTGGTGCATATGTTTGGAGGTCAAAGGTAAGAGCTTTGAAATTGAACAATGATGGGAAAACTATGTTTTGTTTAGCAGTAGGGGTGAGAAAACTATTGGATCCACCTTTGCATGAAGGTTATTATGGCAATGCTTTTGTGGCTTCAAATGTGATATTAAAGGTGAAAGAGCTTAATGAAAAACCACTTTTTGAAGTTGTGAAGCTTATCAAAGAGAGTAAAAAGCTTCCTTTGAATAATGAATATATAAAAAATTCAATTAACATGTTGGAGATAATGAGGAAAGGGAATATAAGGGTTGAAGGAACTGGTGCATCATTGGTGTTAACTGATTGGAGACAACTTGGTTTGTTGCAAGAAGTTGATTTTGGATGGAAGGATTCAGTGAATATTGTGCCTGTTCCTTGGAACATGTTTGGTTTTGTGGATTTGTGCCTTTTTTTGCCTCCAAGTAAGTTGGATTCTTCAATGAAAGGAGGAGTTAGGATCTTTGTGTCACTTCCAAAAGCTTCAATGGCTAAGTTTAAGGAGGAGATGGAATTCCTTAAGGTCATGAAAGTTGATGAAAATTGCTCATAG

Protein sequence

>MS.gene07708.t1

MENHKKSLSLSLDTKDIVIVKPSKPTPSEILSLSTIDNDPNINILCQTIYVYKPNLDIPNDQKDPACVIKEALSKALVYYYPLAGKITTLDDGKLGINCNGDGVPFLESNANCELSSLHYLEGIDVPTAQKLVFDNPSQDQTSPHPLVFKVTKFLCGGFTIGMGLSHSVCDGFGASQFYRALAELASGKNEPSLKPVWERERLTAKSTLKEQPFQFLIDKTSIATSPFLPTKEISHECFNLNGETIKRLKMKLMKESDDDNVTKESFTTLETLGAYVWRSKVRALKLNNDGKTMFCLAVGVRKLLDPPLHEGYYGNAFVASNVILKVKELNEKPLFEVVKLIKESKKLPLNNEYIKNSINMLEIMRKGNIRVEGTGASLVLTDWRQLGLLQEVDFGWKDSVNIVPVPWNMFGFVDLCLFLPPSKLDSSMKGGVRIFVSLPKASMAKFKEEMEFLKVMKVDENCS