AlfalfaGEDB | MS.gene38522

M. sativa cultivar XinJiangDaYe / MS.gene38522

KEGG: K20240
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747
PFAM: PF02458.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38522.t1	RHN67803.1	87.7	464	31	3	1	441	47	507	1.40E-228	802

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38522.t1	Q8GYW8	39.0	462	237	13	8	441	11	455	1.2e-74	282.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38522.t1	A0A396ITJ2	87.7	464	31	3	1	441	47	507	1.0e-228	802.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene066660	MS.gene38522	PPI
MS.gene38522	MS.gene066657	PPI
MS.gene38522	MS.gene32938	PPI
MS.gene38522	MS.gene99221	PPI
MS.gene38522	MS.gene56799	PPI
MS.gene38522	MS.gene063868	PPI
MS.gene38522	MS.gene063865	PPI
MS.gene38522	MS.gene032349	PPI
MS.gene38522	MS.gene069767	PPI
MS.gene38522	MS.gene000763	PPI
MS.gene38522	MS.gene012965	PPI
MS.gene046246	MS.gene38522	PPI
MS.gene38522	MS.gene28251	PPI
MS.gene50379	MS.gene38522	PPI
MS.gene38522	MS.gene90491	PPI
MS.gene38522	MS.gene32936	PPI
MS.gene38522	MS.gene016532	PPI
MS.gene38700	MS.gene38522	PPI
MS.gene38522	MS.gene50384	PPI
MS.gene38522	MS.gene38977	PPI
MS.gene38522	MS.gene066701	PPI
MS.gene38522	MS.gene50355	PPI
MS.gene38522	MS.gene38703	PPI
MS.gene38522	MS.gene039597	PPI
MS.gene38522	MS.gene38365	PPI
MS.gene32261	MS.gene38522	PPI
MS.gene38522	MS.gene011799	PPI
MS.gene38522	MS.gene50420	PPI
MS.gene99219	MS.gene38522	PPI
MS.gene38522	MS.gene32933	PPI
MS.gene38522	MS.gene064101	PPI
MS.gene38522	MS.gene38362	PPI
MS.gene56795	MS.gene38522	PPI
MS.gene38522	MS.gene38361	PPI
MS.gene38522	MS.gene50356	PPI
MS.gene38522	MS.gene87536	PPI
MS.gene38522	MS.gene56797	PPI
MS.gene38522	MS.gene011837	PPI
MS.gene38522	MS.gene99218	PPI
MS.gene38522	MS.gene38706	PPI
MS.gene38522	MS.gene38363	PPI
MS.gene38522	MS.gene78818	PPI
MS.gene38522	MS.gene38701	PPI
MS.gene38522	MS.gene38359	PPI
MS.gene38522	MS.gene011798	PPI
MS.gene99223	MS.gene38522	PPI
MS.gene38522	MS.gene002544	PPI
MS.gene066634	MS.gene38522	PPI
MS.gene38522	MS.gene38699	PPI
MS.gene38522	MS.gene46265	PPI
MS.gene38522	MS.gene000764	PPI
MS.gene38522	MS.gene50382	PPI
MS.gene38522	MS.gene90496	PPI
MS.gene38522	MS.gene012959	PPI
MS.gene011796	MS.gene38522	PPI
MS.gene38522	MS.gene004218	PPI
MS.gene87537	MS.gene38522	PPI
MS.gene38522	MS.gene016477	PPI
MS.gene38522	MS.gene87191	PPI
MS.gene013787	MS.gene38522	PPI
MS.gene38522	MS.gene012960	PPI
MS.gene38522	MS.gene02573	PPI
MS.gene87532	MS.gene38522	PPI
MS.gene38522	MS.gene012957	PPI
MS.gene38522	MS.gene87577	PPI
MS.gene38522	MS.gene069321	PPI
MS.gene03202	MS.gene38522	PPI
MS.gene38522	MS.gene95242	PPI
MS.gene38522	MS.gene38702	PPI
MS.gene007831	MS.gene38522	PPI
MS.gene38522	MS.gene32934	PPI
MS.gene38522	MS.gene90492	PPI
MS.gene38522	MS.gene56798	PPI
MS.gene38522	MS.gene38704	PPI
MS.gene38522	MS.gene56796	PPI
MS.gene99222	MS.gene38522	PPI
MS.gene38522	MS.gene066658	PPI
MS.gene38522	MS.gene87496	PPI
MS.gene38522	MS.gene070019	PPI
MS.gene38522	MS.gene011801	PPI
MS.gene066656	MS.gene38522	PPI
MS.gene38522	MS.gene90493	PPI
MS.gene38522	MS.gene012961	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38522.t1	MTR_3g465910	87.636	461	31	3	1	438	1	458	0.0	825
MS.gene38522.t1	MTR_3g465930	84.483	464	49	1	1	441	1	464	0.0	818
MS.gene38522.t1	MTR_3g465950	74.723	451	79	4	1	427	1	440	0.0	667
MS.gene38522.t1	MTR_3g465980	66.309	466	126	6	1	441	1	460	0.0	625
MS.gene38522.t1	MTR_3g465990	63.734	466	138	6	1	441	1	460	0.0	610
MS.gene38522.t1	MTR_3g465880	64.681	470	134	8	1	441	1	467	0.0	603
MS.gene38522.t1	MTR_3g465870	67.238	467	85	7	1	441	1	425	0.0	596
MS.gene38522.t1	MTR_6g053810	58.065	465	165	8	1	438	1	462	0.0	522
MS.gene38522.t1	MTR_4g055170	47.629	464	200	11	7	441	9	458	1.12e-138	405
MS.gene38522.t1	MTR_2g015430	30.594	438	249	17	29	436	23	435	5.18e-54	186
MS.gene38522.t1	MTR_7g027175	31.818	396	214	13	17	382	23	392	1.42e-40	150
MS.gene38522.t1	MTR_1g040175	30.769	338	203	8	10	325	9	337	3.01e-39	147
MS.gene38522.t1	MTR_8g096530	28.256	453	253	16	17	436	14	427	7.85e-39	145
MS.gene38522.t1	MTR_7g110610	33.540	322	159	11	17	325	12	291	3.28e-37	140
MS.gene38522.t1	MTR_1g081660	26.667	450	275	15	17	438	25	447	1.09e-36	140
MS.gene38522.t1	MTR_1g040215	30.030	333	198	8	17	325	16	337	1.46e-35	137
MS.gene38522.t1	MTR_3g071320	27.475	404	235	11	10	377	5	386	4.05e-35	135
MS.gene38522.t1	MTR_3g098980	28.256	453	262	16	8	432	12	429	2.92e-34	133
MS.gene38522.t1	MTR_1g053315	28.404	426	258	16	19	413	30	439	1.35e-33	131
MS.gene38522.t1	MTR_7g114520	29.723	397	226	15	17	382	18	392	5.19e-33	130
MS.gene38522.t1	MTR_5g076700	25.510	392	244	9	17	380	17	388	1.67e-31	125
MS.gene38522.t1	MTR_7g114550	28.399	331	207	8	17	325	17	339	1.78e-30	122
MS.gene38522.t1	MTR_3g112180	25.221	452	261	15	18	433	20	430	1.59e-29	120
MS.gene38522.t1	MTR_7g114470	26.329	395	242	11	17	382	18	392	3.31e-29	119
MS.gene38522.t1	MTR_7g114560	28.012	332	207	9	17	325	17	339	4.09e-29	119
MS.gene38522.t1	MTR_7g114490	28.354	395	232	15	17	382	17	389	6.40e-28	116
MS.gene38522.t1	MTR_2g105330	26.000	400	243	14	10	377	3	381	3.53e-27	113
MS.gene38522.t1	MTR_1g040320	26.157	432	279	13	10	438	9	403	1.08e-26	111
MS.gene38522.t1	MTR_2g064495	26.000	400	243	14	10	377	3	381	1.97e-26	110
MS.gene38522.t1	MTR_8g075610	27.374	358	213	11	17	346	1	339	3.63e-26	110
MS.gene38522.t1	MTR_1g040315	29.276	304	176	9	17	296	16	304	6.91e-25	106
MS.gene38522.t1	MTR_4g127650	28.869	336	197	11	18	323	18	341	1.05e-24	106
MS.gene38522.t1	MTR_4g007540	25.750	400	245	14	10	377	3	382	1.29e-24	105
MS.gene38522.t1	MTR_3g049150	26.053	380	220	15	18	357	10	368	1.97e-24	105
MS.gene38522.t1	MTR_7g086000	27.642	369	212	14	18	347	12	364	1.12e-23	103
MS.gene38522.t1	MTR_7g085930	26.893	383	225	14	5	346	1	369	1.72e-22	100
MS.gene38522.t1	MTR_3g026950	23.326	463	279	15	18	432	10	444	7.21e-22	97.8
MS.gene38522.t1	MTR_4g097090	26.393	341	200	9	18	323	17	341	8.08e-22	97.8
MS.gene38522.t1	MTR_1g040195	25.000	448	261	14	17	438	16	414	1.14e-21	97.1
MS.gene38522.t1	MTR_0502s0010	29.958	237	145	7	110	325	2	238	1.66e-20	90.5
MS.gene38522.t1	MTR_4g013050	25.065	387	243	12	18	387	12	368	2.26e-20	93.2
MS.gene38522.t1	MTR_7g084940	26.718	393	220	17	17	372	23	384	1.45e-16	82.0
MS.gene38522.t1	MTR_3g102020	27.985	268	162	9	70	311	70	332	6.19e-16	80.1
MS.gene38522.t1	MTR_3g102010	27.778	270	157	9	61	297	54	318	2.64e-15	78.2
MS.gene38522.t1	MTR_0042s0190	27.011	174	106	3	172	325	1	173	7.83e-15	75.1
MS.gene38522.t1	MTR_3g101900	26.692	266	170	7	69	311	66	329	7.26e-14	73.6
MS.gene38522.t1	MTR_3g101960	27.536	276	155	9	69	311	68	331	2.11e-13	72.4
MS.gene38522.t1	MTR_4g022720	25.275	273	175	6	64	311	50	318	9.75e-13	70.1
MS.gene38522.t1	MTR_3g101970	26.937	271	153	11	70	314	70	321	1.05e-11	67.0
MS.gene38522.t1	MTR_5g090880	22.888	367	226	13	69	389	67	422	1.44e-11	66.6
MS.gene38522.t1	MTR_5g090830	23.028	317	192	10	69	345	66	370	3.66e-11	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38522.t1	AT5G07080	39.046	461	227	11	8	438	12	448	2.69e-95	294
MS.gene38522.t1	AT2G25150	38.961	462	237	13	8	441	11	455	2.08e-92	287
MS.gene38522.t1	AT3G47170	38.330	467	237	14	10	438	12	465	9.93e-86	270
MS.gene38522.t1	AT2G23510	38.596	456	239	14	8	438	11	450	1.43e-84	266
MS.gene38522.t1	AT1G28680	34.967	449	251	12	10	432	4	437	2.28e-71	232
MS.gene38522.t1	AT1G28680	36.240	367	198	10	10	350	4	360	2.09e-59	199
MS.gene38522.t1	AT5G41040	29.011	455	263	15	8	434	15	437	1.40e-42	156
MS.gene38522.t1	AT5G41040	29.011	455	263	15	8	434	31	453	1.76e-42	156
MS.gene38522.t1	AT3G62160	30.841	428	239	16	16	421	11	403	7.53e-42	154
MS.gene38522.t1	AT3G48720	28.635	447	249	16	17	431	16	424	1.00e-40	150
MS.gene38522.t1	AT3G03480	29.167	456	270	17	10	438	19	448	2.84e-37	142
MS.gene38522.t1	AT5G63560	29.426	401	231	15	8	382	7	381	2.78e-33	130
MS.gene38522.t1	AT5G17540	29.462	353	213	10	7	334	6	347	1.50e-32	129
MS.gene38522.t1	AT1G03390	27.295	414	246	14	20	400	32	423	2.26e-31	125
MS.gene38522.t1	AT2G40230	27.778	396	240	13	10	377	5	382	2.69e-30	122
MS.gene38522.t1	AT1G27620	28.465	404	220	17	11	378	10	380	7.85e-29	118
MS.gene38522.t1	AT5G48930	27.747	364	220	12	10	346	3	350	1.41e-27	114
MS.gene38522.t1	AT2G19070	27.430	463	258	20	18	432	12	444	7.52e-24	103
MS.gene38522.t1	AT5G57840	28.226	372	206	17	10	344	3	350	1.28e-20	94.4
MS.gene38522.t1	AT1G65450	28.788	396	223	18	12	372	21	392	6.68e-18	86.3
MS.gene38522.t1	AT4G31910	25.908	413	232	19	28	389	29	418	1.74e-17	84.7
MS.gene38522.t1	AT1G24430	29.180	305	161	17	17	295	12	287	2.72e-17	84.0
MS.gene38522.t1	AT5G47950	32.979	188	103	8	17	199	13	182	4.77e-12	67.8

Find 84 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTATGAAATTGAAGCTTTA+AGG	0.137847	3.4:-61711570	MS.gene38522:CDS
AATACCAACGGTACTGAATT+TGG	0.155661	3.4:-61712636	MS.gene38522:CDS
TTTCAGGAAAATTTAGATTT+TGG	0.167927	3.4:-61711757	MS.gene38522:CDS
AAGTTACCCTTTGGTGTTAA+TGG	0.226556	3.4:-61712496	MS.gene38522:CDS
ACTTTACCTAAAGGGTATTA+TGG	0.240183	3.4:-61712006	MS.gene38522:CDS
AGTTTGGGCAATGTTATTAT+TGG	0.245296	3.4:+61713707	None:intergenic
TCATGATCATCAAGTTTATT+AGG	0.262038	3.4:+61711658	None:intergenic
CTTTGTGGTGGTTTCACAAT+TGG	0.270838	3.4:-61712462	MS.gene38522:CDS
ATACCAACGGTACTGAATTT+GGG	0.304721	3.4:-61712635	MS.gene38522:CDS
CACGAACTCAATAAACTCTT+TGG	0.329022	3.4:-61711863	MS.gene38522:CDS
CACAGAAATTGCAAAACATT+TGG	0.334670	3.4:-61712547	MS.gene38522:CDS
GGATGGTTTGAGCATGGAAT+TGG	0.352453	3.4:-61711827	MS.gene38522:CDS
GAATTGCCATAATACCCTTT+AGG	0.371067	3.4:+61712000	None:intergenic
TCTAACGGAGTGGAAACATT+TGG	0.373940	3.4:-61711782	MS.gene38522:CDS
CCTTTCTTCTCTTCATTACC+TGG	0.381983	3.4:-61712580	MS.gene38522:CDS
ATCGGTATACATGAACAGTT+TGG	0.382280	3.4:+61713691	None:intergenic
CTAACGGAGTGGAAACATTT+GGG	0.386174	3.4:-61711781	MS.gene38522:CDS
CTAACTCCTCCATCCATTGA+TGG	0.386304	3.4:+61711634	None:intergenic
AAATTCAGTACCGTTGGTAT+TGG	0.387756	3.4:+61712638	None:intergenic
CTATCAACACTTGACAATAA+AGG	0.389671	3.4:-61713732	MS.gene38522:CDS
AACATAGGCATAGCAGCAAC+AGG	0.398229	3.4:+61711595	None:intergenic
TGGTATCAGACGAAACTTGA+TGG	0.415157	3.4:-61712037	MS.gene38522:CDS
ATTATGATACTTTACCTAAA+GGG	0.416811	3.4:-61712014	MS.gene38522:CDS
CATCAATGGATGGAGGAGTT+AGG	0.420940	3.4:-61711633	MS.gene38522:CDS
CATGCTATTTGTGACGGATT+TGG	0.423939	3.4:-61712426	MS.gene38522:CDS
AGTCTCTTTAATCAGCTTAA+CGG	0.431509	3.4:+61711915	None:intergenic
CAAGGATAAAAGTTACCCTT+TGG	0.446508	3.4:-61712505	MS.gene38522:CDS
GGTGGTTTCACAATTGGAAT+GGG	0.460166	3.4:-61712456	MS.gene38522:CDS
GATTATGATACTTTACCTAA+AGG	0.466862	3.4:-61712015	MS.gene38522:CDS
TCCATGGGACATTGTGGAAA+TGG	0.468394	3.4:+61712294	None:intergenic
TCCCACACAGGTTTCACTGA+TGG	0.471401	3.4:+61712351	None:intergenic
TGGTGGTTTCACAATTGGAA+TGG	0.478781	3.4:-61712457	MS.gene38522:CDS
GCAAGCATCTTGCATGGTGC+AGG	0.485601	3.4:+61711709	None:intergenic
TTGTGACCATTAACACCAAA+GGG	0.486355	3.4:+61712490	None:intergenic
GGTTGCTTTCTCATATTCCA+TGG	0.492823	3.4:+61713824	None:intergenic
TTGCTGCTATGCCTATGTTC+AGG	0.493790	3.4:-61711591	MS.gene38522:CDS
GTCACAAAGTTTCTTTGTGG+TGG	0.496540	3.4:-61712474	MS.gene38522:CDS
AGAAAGAATACAAGAAGGAG+TGG	0.500364	3.4:+61713755	None:intergenic
TGAATGAAAATGAAAACATA+AGG	0.501906	3.4:-61712158	MS.gene38522:CDS
AAAACTAGTATACCTGCTAA+AGG	0.502972	3.4:+61713579	None:intergenic
TCAATTTCATACCTGAACAT+AGG	0.506283	3.4:+61711580	None:intergenic
TTTCTGTGTTAGTATTGTCC+AGG	0.512010	3.4:+61712562	None:intergenic
AGCAACCCTATGGATTGAAA+AGG	0.513610	3.4:-61713808	MS.gene38522:CDS
TCGGTATACATGAACAGTTT+GGG	0.514380	3.4:+61713692	None:intergenic
GATAGAGAAAGAATACAAGA+AGG	0.520122	3.4:+61713750	None:intergenic
TCTTGATATTCCTTCTCCCA+AGG	0.526970	3.4:-61712523	MS.gene38522:CDS
AGCTTAACGGTTTCATAGAG+TGG	0.529369	3.4:+61711928	None:intergenic
CCAGGTAATGAAGAGAAGAA+AGG	0.533118	3.4:+61712580	None:intergenic
TACCAACGGTACTGAATTTG+GGG	0.542547	3.4:-61712634	MS.gene38522:CDS
AATATGAGAAAGCAACCCTA+TGG	0.543259	3.4:-61713818	MS.gene38522:CDS
CAGGTAATGAAGAGAAGAAA+GGG	0.549845	3.4:+61712581	None:intergenic
ATGGTCACAAAGTTTCTTTG+TGG	0.558191	3.4:-61712477	MS.gene38522:CDS
GCAGTTGTTGAACTTGCAAG+TGG	0.559166	3.4:-61712384	MS.gene38522:CDS
TGATGATCATGATCCATCAA+TGG	0.560359	3.4:-61711647	MS.gene38522:CDS
GGAAGCTAGTGGTGCAGTAA+CGG	0.562555	3.4:-61711806	MS.gene38522:CDS
TTGGAGACTAATCAAGAGGA+TGG	0.571046	3.4:-61711844	MS.gene38522:CDS
TTTCTGTCCATGGGACATTG+TGG	0.573049	3.4:+61712288	None:intergenic
ATGTCACATGCTATTTGTGA+CGG	0.574392	3.4:-61712432	MS.gene38522:CDS
AAGTGCTTGCAGGTTATGTG+TGG	0.575180	3.4:-61712122	MS.gene38522:CDS
TTTGTGACCATTAACACCAA+AGG	0.577570	3.4:+61712489	None:intergenic
TCAAGAGGATGGTTTGAGCA+TGG	0.585513	3.4:-61711833	MS.gene38522:CDS
TGCTTGCAGGTTATGTGTGG+AGG	0.586165	3.4:-61712119	MS.gene38522:CDS
TGGTGCAGTAACGGTTCTAA+CGG	0.589287	3.4:-61711797	MS.gene38522:CDS
ACCATTTCCACAATGTCCCA+TGG	0.598120	3.4:-61712295	MS.gene38522:CDS
AACCCCAAATTCAGTACCGT+TGG	0.605483	3.4:+61712632	None:intergenic
TGAGAAAATACACGTATCGA+TGG	0.615109	3.4:+61711684	None:intergenic
GATCATGATCCATCAATGGA+TGG	0.615987	3.4:-61711643	MS.gene38522:CDS
CTCTTTGGAGACTAATCAAG+AGG	0.617042	3.4:-61711848	MS.gene38522:CDS
CATGAATTGCTGATGATGAT+CGG	0.619995	3.4:+61713673	None:intergenic
ATTCAAAGAAGCGCTGTCGA+AGG	0.626139	3.4:-61713619	MS.gene38522:CDS
GCTTCTTTGAATACATGACA+AGG	0.630468	3.4:+61713630	None:intergenic
CTTCTTTGAATACATGACAA+GGG	0.630974	3.4:+61713631	None:intergenic
CAGTAACGGTTCTAACGGAG+TGG	0.637528	3.4:-61711792	MS.gene38522:CDS
GTGGTTTCACAATTGGAATG+GGG	0.639088	3.4:-61712455	MS.gene38522:CDS
AGACTAGTGAGACATGCTGA+TGG	0.640547	3.4:-61712678	MS.gene38522:CDS
GAAAATACACGTATCGATGG+TGG	0.648323	3.4:+61711687	None:intergenic
CATGATCCATCAATGGATGG+AGG	0.654646	3.4:-61711640	MS.gene38522:CDS
AGAGTCAATGCCAATACCAA+CGG	0.657356	3.4:-61712648	MS.gene38522:CDS
ACATAGGCATAGCAGCAACA+GGG	0.673752	3.4:+61711596	None:intergenic
GCTTGCAGGTTATGTGTGGA+GGG	0.674253	3.4:-61712118	MS.gene38522:CDS
AGCCATCAGTGAAACCTGTG+TGG	0.685980	3.4:-61712353	MS.gene38522:CDS
ATGGTGGCAAGCATCTTGCA+TGG	0.692293	3.4:+61711703	None:intergenic
GCCATCAGTGAAACCTGTGT+GGG	0.717270	3.4:-61712352	MS.gene38522:CDS
AGCATGGAATTGGAAGCTAG+TGG	0.746349	3.4:-61711817	MS.gene38522:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GAAAAAAAATAGTTTTATTT+AGG	+	chr3.4:61712049-61712068	None:intergenic	10.0%
!!	AAAAGACTAATAATTACTAT+CGG	+	chr3.4:61711844-61711863	None:intergenic	15.0%
!!	TAAATAAAGGTCATATATTA+TGG	-	chr3.4:61712236-61712255	MS.gene38522:intron	15.0%
!!	TATAGTAGATGAATAAATAA+AGG	-	chr3.4:61712223-61712242	MS.gene38522:intron	15.0%
!!	TCATCTACTATAAAAAAAAA+AGG	+	chr3.4:61712215-61712234	None:intergenic	15.0%
!!!	ACAATATTGTTTTAAAGTAA+AGG	-	chr3.4:61713166-61713185	MS.gene38522:intron	15.0%
!!!	CAATATTGTTTTAAAGTAAA+GGG	-	chr3.4:61713167-61713186	MS.gene38522:intron	15.0%
!!!	CTTAAATGAAGTATATTTTA+TGG	+	chr3.4:61711869-61711888	None:intergenic	15.0%
!!!	TTCATTTAAGTTCTAAAATA+AGG	-	chr3.4:61711879-61711898	MS.gene38522:CDS	15.0%
!!	ATTATGATACTTTACCTAAA+GGG	-	chr3.4:61713366-61713385	MS.gene38522:intron	20.0%
!!	TGAATGAAAATGAAAACATA+AGG	-	chr3.4:61713222-61713241	MS.gene38522:intron	20.0%
!!!	AAGCAATTTTTTTTCACATA+TGG	-	chr3.4:61712577-61712596	MS.gene38522:CDS	20.0%
!!!	ACCTCTAAAGTAAAAAATAT+AGG	+	chr3.4:61712388-61712407	None:intergenic	20.0%
!!!	AGTATTATTTTGATTCACAA+AGG	+	chr3.4:61713135-61713154	None:intergenic	20.0%
!!!	GTATTATTTTGATTCACAAA+GGG	+	chr3.4:61713134-61713153	None:intergenic	20.0%
!!!	TCCTATATTTTTTACTTTAG+AGG	-	chr3.4:61712384-61712403	MS.gene38522:CDS	20.0%
!!!	TGTGTTTTGATTTTCATTTT+AGG	-	chr3.4:61712317-61712336	MS.gene38522:CDS	20.0%
!!!	TTTCAGGAAAATTTAGATTT+TGG	-	chr3.4:61713623-61713642	MS.gene38522:CDS	20.0%
!	GATTATGATACTTTACCTAA+AGG	-	chr3.4:61713365-61713384	MS.gene38522:intron	25.0%
!	GTGAAAAAAAATTGCTTGTT+AGG	+	chr3.4:61712574-61712593	None:intergenic	25.0%
!	TCATGATCATCAAGTTTATT+AGG	+	chr3.4:61713725-61713744	None:intergenic	25.0%
!	TCTTCTGCAGAAAAAAAAAT+TGG	-	chr3.4:61712653-61712672	MS.gene38522:CDS	25.0%
!!	TAAAACAACTTTTGCATCTA+TGG	+	chr3.4:61713408-61713427	None:intergenic	25.0%
!!	TTTTACTATTATCCTTTAGC+AGG	-	chr3.4:61711789-61711808	MS.gene38522:CDS	25.0%
!!!	AACTTTTTTTCTTCTCTCTT+GGG	-	chr3.4:61712154-61712173	MS.gene38522:CDS	25.0%
!!!	ACAATGCTAAATGTTTTAGT+TGG	-	chr3.4:61713323-61713342	MS.gene38522:intron	25.0%
!!!	ATTTTTTTTTCTGCAGAAGA+TGG	+	chr3.4:61712653-61712672	None:intergenic	25.0%
	AAAACTAGTATACCTGCTAA+AGG	+	chr3.4:61711804-61711823	None:intergenic	30.0%
	AGTCTCTTTAATCAGCTTAA+CGG	+	chr3.4:61713468-61713487	None:intergenic	30.0%
	AGTTTGGGCAATGTTATTAT+TGG	+	chr3.4:61711676-61711695	None:intergenic	30.0%
	ATGAGTGTTATATACAGTGT+CGG	+	chr3.4:61712099-61712118	None:intergenic	30.0%
	CACAGAAATTGCAAAACATT+TGG	-	chr3.4:61712833-61712852	MS.gene38522:intron	30.0%
	CTATCAACACTTGACAATAA+AGG	-	chr3.4:61711648-61711667	MS.gene38522:CDS	30.0%
	CTTCTTTGAATACATGACAA+GGG	+	chr3.4:61711752-61711771	None:intergenic	30.0%
	GATAGAGAAAGAATACAAGA+AGG	+	chr3.4:61711633-61711652	None:intergenic	30.0%
	GGTATGAAATTGAAGCTTTA+AGG	-	chr3.4:61713810-61713829	MS.gene38522:CDS	30.0%
	TCAATTTCATACCTGAACAT+AGG	+	chr3.4:61713803-61713822	None:intergenic	30.0%
!	AAAGGGTAACTTTTATCCTT+GGG	+	chr3.4:61712876-61712895	None:intergenic	30.0%
!	ATCTTCCTTTTCAATCCATA+GGG	+	chr3.4:61711580-61711599	None:intergenic	30.0%
!	CAGGAAAATTTAGATTTTGG+AGG	-	chr3.4:61713626-61713645	MS.gene38522:CDS	30.0%
!!	ACTTTACCTAAAGGGTATTA+TGG	-	chr3.4:61713374-61713393	MS.gene38522:intron	30.0%
!!!	GAACTTTTTTTCTTCTCTCT+TGG	-	chr3.4:61712153-61712172	MS.gene38522:CDS	30.0%
!!!	TTCTTGTTTGCTTGTTTTGT+AGG	-	chr3.4:61712678-61712697	MS.gene38522:CDS	30.0%
	AAATTCAGTACCGTTGGTAT+TGG	+	chr3.4:61712745-61712764	None:intergenic	35.0%
	AATATGAGAAAGCAACCCTA+TGG	-	chr3.4:61711562-61711581	MS.gene38522:CDS	35.0%
	AGAAAGAATACAAGAAGGAG+TGG	+	chr3.4:61711628-61711647	None:intergenic	35.0%
	ATCGGTATACATGAACAGTT+TGG	+	chr3.4:61711692-61711711	None:intergenic	35.0%
	ATGGTCACAAAGTTTCTTTG+TGG	-	chr3.4:61712903-61712922	MS.gene38522:intron	35.0%
	CAAGGATAAAAGTTACCCTT+TGG	-	chr3.4:61712875-61712894	MS.gene38522:intron	35.0%
	CACGAACTCAATAAACTCTT+TGG	-	chr3.4:61713517-61713536	MS.gene38522:intron	35.0%
	CAGGTAATGAAGAGAAGAAA+GGG	+	chr3.4:61712802-61712821	None:intergenic	35.0%
	GAATTGCCATAATACCCTTT+AGG	+	chr3.4:61713383-61713402	None:intergenic	35.0%
	GCTTCTTTGAATACATGACA+AGG	+	chr3.4:61711753-61711772	None:intergenic	35.0%
	TCGGTATACATGAACAGTTT+GGG	+	chr3.4:61711691-61711710	None:intergenic	35.0%
	TGAGAAAATACACGTATCGA+TGG	+	chr3.4:61713699-61713718	None:intergenic	35.0%
	TGATGATCATGATCCATCAA+TGG	-	chr3.4:61713733-61713752	MS.gene38522:CDS	35.0%
	TGGGAAAGAGAAAAACAAGT+TGG	-	chr3.4:61713047-61713066	MS.gene38522:intron	35.0%
	TTAGCAGTTGCTTCCAAAAA+TGG	+	chr3.4:61712774-61712793	None:intergenic	35.0%
	TTAGTTCAACACTTCTACAC+CGG	-	chr3.4:61712070-61712089	MS.gene38522:CDS	35.0%
	TTGTGACCATTAACACCAAA+GGG	+	chr3.4:61712893-61712912	None:intergenic	35.0%
	TTTCTGTGTTAGTATTGTCC+AGG	+	chr3.4:61712821-61712840	None:intergenic	35.0%
	TTTGTGACCATTAACACCAA+AGG	+	chr3.4:61712894-61712913	None:intergenic	35.0%
!	AATACCAACGGTACTGAATT+TGG	-	chr3.4:61712744-61712763	MS.gene38522:intron	35.0%
!	ATACCAACGGTACTGAATTT+GGG	-	chr3.4:61712745-61712764	MS.gene38522:intron	35.0%
!	ATGTCACATGCTATTTGTGA+CGG	-	chr3.4:61712948-61712967	MS.gene38522:intron	35.0%
!	CAAAGGGTAACTTTTATCCT+TGG	+	chr3.4:61712877-61712896	None:intergenic	35.0%
!	CATCTTCCTTTTCAATCCAT+AGG	+	chr3.4:61711581-61711600	None:intergenic	35.0%
!	CATGAATTGCTGATGATGAT+CGG	+	chr3.4:61711710-61711729	None:intergenic	35.0%
!	GTAACAGATTTTCTGTCCAT+GGG	+	chr3.4:61713104-61713123	None:intergenic	35.0%
!	GTCATTGCTGCTAAGTTTTA+AGG	+	chr3.4:61713300-61713319	None:intergenic	35.0%
!	TAACTTTTATCCTTGGGAGA+AGG	+	chr3.4:61712870-61712889	None:intergenic	35.0%
!	TGTAACACGTCTAGTTTAAG+AGG	+	chr3.4:61711953-61711972	None:intergenic	35.0%
!	TGTAACAGATTTTCTGTCCA+TGG	+	chr3.4:61713105-61713124	None:intergenic	35.0%
!!	AAGTTACCCTTTGGTGTTAA+TGG	-	chr3.4:61712884-61712903	MS.gene38522:intron	35.0%
!!	TGAATTTGGGGTTCCATTTT+TGG	-	chr3.4:61712758-61712777	MS.gene38522:intron	35.0%
	AGAGTCAATGCCAATACCAA+CGG	-	chr3.4:61712732-61712751	MS.gene38522:intron	40.0%
	AGCTTAACGGTTTCATAGAG+TGG	+	chr3.4:61713455-61713474	None:intergenic	40.0%
	ATGAAGCATAGACTCCAACA+CGG	+	chr3.4:61712445-61712464	None:intergenic	40.0%
	CCAGGTAATGAAGAGAAGAA+AGG	+	chr3.4:61712803-61712822	None:intergenic	40.0%
	CCTTTCTTCTCTTCATTACC+TGG	-	chr3.4:61712800-61712819	MS.gene38522:intron	40.0%
	CTAACGGAGTGGAAACATTT+GGG	-	chr3.4:61713599-61713618	MS.gene38522:CDS	40.0%
	CTTTGTGGTGGTTTCACAAT+TGG	-	chr3.4:61712918-61712937	MS.gene38522:intron	40.0%
	GATCATGATCCATCAATGGA+TGG	-	chr3.4:61713737-61713756	MS.gene38522:CDS	40.0%
	GGTGGTTTCACAATTGGAAT+GGG	-	chr3.4:61712924-61712943	MS.gene38522:intron	40.0%
	GTCACAAAGTTTCTTTGTGG+TGG	-	chr3.4:61712906-61712925	MS.gene38522:intron	40.0%
	GTGGTTTCACAATTGGAATG+GGG	-	chr3.4:61712925-61712944	MS.gene38522:intron	40.0%
	TCTAACGGAGTGGAAACATT+TGG	-	chr3.4:61713598-61713617	MS.gene38522:CDS	40.0%
	TCTTGATATTCCTTCTCCCA+AGG	-	chr3.4:61712857-61712876	MS.gene38522:intron	40.0%
	TGGTATCAGACGAAACTTGA+TGG	-	chr3.4:61713343-61713362	MS.gene38522:intron	40.0%
	TGGTGGTTTCACAATTGGAA+TGG	-	chr3.4:61712923-61712942	MS.gene38522:intron	40.0%
	TGTTGGAGTCTATGCTTCAT+AGG	-	chr3.4:61712445-61712464	MS.gene38522:CDS	40.0%
	TTGGAGACTAATCAAGAGGA+TGG	-	chr3.4:61713536-61713555	MS.gene38522:intron	40.0%
!	AGCAACCCTATGGATTGAAA+AGG	-	chr3.4:61711572-61711591	MS.gene38522:CDS	40.0%
!	CTCTTTGGAGACTAATCAAG+AGG	-	chr3.4:61713532-61713551	MS.gene38522:intron	40.0%
!	GAAAATACACGTATCGATGG+TGG	+	chr3.4:61713696-61713715	None:intergenic	40.0%
!	TACCAACGGTACTGAATTTG+GGG	-	chr3.4:61712746-61712765	MS.gene38522:intron	40.0%
!	TGTTTTTCTCTTTCCCACAC+AGG	+	chr3.4:61713044-61713063	None:intergenic	40.0%
!	TTATATACAGTGTCGGACAC+CGG	+	chr3.4:61712092-61712111	None:intergenic	40.0%
!!	AAGAGGTGTTTGTGCTTCAT+AGG	+	chr3.4:61711936-61711955	None:intergenic	40.0%
!!	CAAGAAGGAGTGGATTTTGA+TGG	+	chr3.4:61711618-61711637	None:intergenic	40.0%
!!	CATGCTATTTGTGACGGATT+TGG	-	chr3.4:61712954-61712973	MS.gene38522:intron	40.0%
!!	GTGGAAACATTTGGGTTTTC+AGG	-	chr3.4:61713607-61713626	MS.gene38522:CDS	40.0%
!!!	ACAACTTTTGAAGTGCTTGC+AGG	-	chr3.4:61713248-61713267	MS.gene38522:intron	40.0%
	AACACTCATACGAGTCGTGT+CGG	-	chr3.4:61712110-61712129	MS.gene38522:CDS	45.0%
	AACATAGGCATAGCAGCAAC+AGG	+	chr3.4:61713788-61713807	None:intergenic	45.0%
	AACCCCAAATTCAGTACCGT+TGG	+	chr3.4:61712751-61712770	None:intergenic	45.0%
	AAGTGCTTGCAGGTTATGTG+TGG	-	chr3.4:61713258-61713277	MS.gene38522:intron	45.0%
	ACATAGGCATAGCAGCAACA+GGG	+	chr3.4:61713787-61713806	None:intergenic	45.0%
	ACCATTTCCACAATGTCCCA+TGG	-	chr3.4:61713085-61713104	MS.gene38522:intron	45.0%
	ACGTGTCGTATGAGTGTCAT+AGG	+	chr3.4:61712005-61712024	None:intergenic	45.0%
	AGACTAGTGAGACATGCTGA+TGG	-	chr3.4:61712702-61712721	MS.gene38522:intron	45.0%
	AGCATGGAATTGGAAGCTAG+TGG	-	chr3.4:61713563-61713582	MS.gene38522:intron	45.0%
	CATCAATGGATGGAGGAGTT+AGG	-	chr3.4:61713747-61713766	MS.gene38522:CDS	45.0%
	CATGATCCATCAATGGATGG+AGG	-	chr3.4:61713740-61713759	MS.gene38522:CDS	45.0%
	CTAACTCCTCCATCCATTGA+TGG	+	chr3.4:61713749-61713768	None:intergenic	45.0%
	GCAGTTGTTGAACTTGCAAG+TGG	-	chr3.4:61712996-61713015	MS.gene38522:intron	45.0%
	GGATGGTTTGAGCATGGAAT+TGG	-	chr3.4:61713553-61713572	MS.gene38522:intron	45.0%
	TCAAGAGGATGGTTTGAGCA+TGG	-	chr3.4:61713547-61713566	MS.gene38522:intron	45.0%
	TCCATGGGACATTGTGGAAA+TGG	+	chr3.4:61713089-61713108	None:intergenic	45.0%
	TTGCTGCTATGCCTATGTTC+AGG	-	chr3.4:61713789-61713808	MS.gene38522:CDS	45.0%
	TTTCTGTCCATGGGACATTG+TGG	+	chr3.4:61713095-61713114	None:intergenic	45.0%
!	TGGTGCAGTAACGGTTCTAA+CGG	-	chr3.4:61713583-61713602	MS.gene38522:intron	45.0%
!!	ATTCAAAGAAGCGCTGTCGA+AGG	-	chr3.4:61711761-61711780	MS.gene38522:CDS	45.0%
!!	ATAAATTAATATTTATATAG+CGG	-	chr3.4:61712350-61712369	MS.gene38522:CDS	5.0%
	AGCCATCAGTGAAACCTGTG+TGG	-	chr3.4:61713027-61713046	MS.gene38522:intron	50.0%
	ATGGTGGCAAGCATCTTGCA+TGG	+	chr3.4:61713680-61713699	None:intergenic	50.0%
	GCCATCAGTGAAACCTGTGT+GGG	-	chr3.4:61713028-61713047	MS.gene38522:intron	50.0%
	GCTTGCAGGTTATGTGTGGA+GGG	-	chr3.4:61713262-61713281	MS.gene38522:intron	50.0%
	GGAAGCTAGTGGTGCAGTAA+CGG	-	chr3.4:61713574-61713593	MS.gene38522:intron	50.0%
	TCCCACACAGGTTTCACTGA+TGG	+	chr3.4:61713032-61713051	None:intergenic	50.0%
	TGCTTGCAGGTTATGTGTGG+AGG	-	chr3.4:61713261-61713280	MS.gene38522:intron	50.0%
!	CAGTAACGGTTCTAACGGAG+TGG	-	chr3.4:61713588-61713607	MS.gene38522:intron	50.0%
	CGCCTGACACGATACTGACA+CGG	+	chr3.4:61712421-61712440	None:intergenic	55.0%
	GCAAGCATCTTGCATGGTGC+AGG	+	chr3.4:61713674-61713693	None:intergenic	55.0%
	GTCCGTGTCAGTATCGTGTC+AGG	-	chr3.4:61712416-61712435	MS.gene38522:CDS	55.0%
	TTACACTGTCCGACACGCGT+CGG	-	chr3.4:61711968-61711987	MS.gene38522:CDS	55.0%
	ATCGTGTCAGGCGTCCGTGT+TGG	-	chr3.4:61712428-61712447	MS.gene38522:CDS	60.0%
	TGTCGAACACCGACGCGTGT+CGG	+	chr3.4:61711980-61711999	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	61711558	61713844	61711558	ID=MS.gene38522
chr3.4	mRNA	61711558	61713844	61711558	ID=MS.gene38522.t1;Parent=MS.gene38522
chr3.4	exon	61713592	61713844	61713592	ID=MS.gene38522.t1.exon1;Parent=MS.gene38522.t1
chr3.4	CDS	61713592	61713844	61713592	ID=cds.MS.gene38522.t1;Parent=MS.gene38522.t1
chr3.4	exon	61712284	61712702	61712284	ID=MS.gene38522.t1.exon2;Parent=MS.gene38522.t1
chr3.4	CDS	61712284	61712702	61712284	ID=cds.MS.gene38522.t1;Parent=MS.gene38522.t1
chr3.4	exon	61711558	61712214	61711558	ID=MS.gene38522.t1.exon3;Parent=MS.gene38522.t1
chr3.4	CDS	61711558	61712214	61711558	ID=cds.MS.gene38522.t1;Parent=MS.gene38522.t1

Gene Sequence

>MS.gene38522

ATGGAATATGAGAAAGCAACCCTATGGATTGAAAAGGAAGATGTTTTGCTTGTAAAGCCATCAAAATCCACTCCTTCTTGTATTCTTTCTCTATCAACACTTGACAATAAAGGTGCCAATAATAACATTGCCCAAACTGTTCATGTATACCGATCATCATCAGCAATTCATGATTATGATTCTAGTTTCAACCCTTGTCATGTATTCAAAGAAGCGCTGTCGAAGGCTTTGTTTTACTATTATCCTTTAGCAGGTATACTAGTTTTTTTTTCTTTAAGAACAACCGATAGTAATTATTAGTCTTTTTACCATAAAATATACTTCATTTAAGTTCTAAAATAAGGAGAGTACAATCAATTTGTCTATGAGATGTAACCTATGAAGCACAAACACCTCTTAAACTAGACGTGTTACACTGTCCGACACGCGTCGGTGTTCGACAGTCCTATGACACTCATACGACACGTGTCGAACAACTAATATTGTGTCCTAAATAAAACTATTTTTTTTCTTTAGTTCAACACTTCTACACCGGTGTCCGACACTGTATATAACACTCATACGAGTCGTGTCGGACAACTCAGACAAATATCTAGAACTTTTTTTCTTCTCTCTTGGGAGTTATAGAAATTAAAGTTAATTACAATATTTTTACCTTTTTTTTTTATAGTAGATGAATAAATAAAGGTCATATATTATGGTATCTTGTTTTAGAACTTTTTTCAAAGAAATAAATTGCTTAAGTTAGATGCTTATGTATGTGTTTTGATTTTCATTTTAGGCTGTCTATAAATAAATTAATATTTATATAGCGGTGTGATCATTGTCCTATATTTTTTACTTTAGAGGTGTCGATTTGTCCGTGTCAGTATCGTGTCAGGCGTCCGTGTTGGAGTCTATGCTTCATAGGATGTAACAAAAGAAAAGTTTGACTATGAGTTGAAACATTTTTCATCTATATTTTTAAAGTCAACACGCTATCAACACACATAGAAATTTCAGTAGCGAAAAGTCCTAACAAGCAATTTTTTTTCACATATGGCTAATAGTCAAGAATAATGAAAGATTCACAAACATTAATTGCATTTGCATCCATCTTCTGCAGAAAAAAAAATTGGTTTTCTTGTTTGCTTGTTTTGTAGGTAGACTAGTGAGACATGCTGATGGAAAATTTAGAGTCAATGCCAATACCAACGGTACTGAATTTGGGGTTCCATTTTTGGAAGCAACTGCTAATTGCACCCTTTCTTCTCTTCATTACCTGGACAATACTAACACAGAAATTGCAAAACATTTGGTTCTTGATATTCCTTCTCCCAAGGATAAAAGTTACCCTTTGGTGTTAATGGTCACAAAGTTTCTTTGTGGTGGTTTCACAATTGGAATGGGGATGTCACATGCTATTTGTGACGGATTTGGTGCATCGCAATTCTTCAAAGCAGTTGTTGAACTTGCAAGTGGAAGAACTGAGCCATCAGTGAAACCTGTGTGGGAAAGAGAAAAACAAGTTGGAACAATAACTACACAACCATTTCCACAATGTCCCATGGACAGAAAATCTGTTACATTTTCACCCTTTGTGAATCAAAATAATACTATGATTATTAAACAATATTGTTTTAAAGTAAAGGGTGAAATGATAACAAGACTTAAGATGAGTTTGATGAATGAAAATGAAAACATAAGGTTCACAACTTTTGAAGTGCTTGCAGGTTATGTGTGGAGGGCAAGATCAAGAGCCTTAAAACTTAGCAGCAATGACAAAACAATGCTAAATGTTTTAGTTGGTATCAGACGAAACTTGATGGATTATGATACTTTACCTAAAGGGTATTATGGCAATTCTACCATAGATGCAAAAGTTGTTTTAAAAGTGAGTGAGCTCGACGAAATGCCACTCTATGAAACCGTTAAGCTGATTAAAGAGACTAAAAATATTGCTTTCACTGCTGATTATGTCACGAACTCAATAAACTCTTTGGAGACTAATCAAGAGGATGGTTTGAGCATGGAATTGGAAGCTAGTGGTGCAGTAACGGTTCTAACGGAGTGGAAACATTTGGGTTTTCAGGAAAATTTAGATTTTGGAGGCTATGAATTAGTGAATTTTCTACCTGCACCATGCAAGATGCTTGCCACCATCGATACGTGTATTTTCTCATCTCCTAATAAACTTGATGATCATGATCCATCAATGGATGGAGGAGTTAGGATATTTACATCACTCCCTGTTGCTGCTATGCCTATGTTCAGGTATGAAATTGAAGCTTTAAGGTTTCTTTGTTGA

Protein sequence

>MS.gene38522.t1

MEYEKATLWIEKEDVLLVKPSKSTPSCILSLSTLDNKGANNNIAQTVHVYRSSSAIHDYDSSFNPCHVFKEALSKALFYYYPLAGRLVRHADGKFRVNANTNGTEFGVPFLEATANCTLSSLHYLDNTNTEIAKHLVLDIPSPKDKSYPLVLMVTKFLCGGFTIGMGMSHAICDGFGASQFFKAVVELASGRTEPSVKPVWEREKQVGTITTQPFPQCPMDRKSGEMITRLKMSLMNENENIRFTTFEVLAGYVWRARSRALKLSSNDKTMLNVLVGIRRNLMDYDTLPKGYYGNSTIDAKVVLKVSELDEMPLYETVKLIKETKNIAFTADYVTNSINSLETNQEDGLSMELEASGAVTVLTEWKHLGFQENLDFGGYELVNFLPAPCKMLATIDTCIFSSPNKLDDHDPSMDGGVRIFTSLPVAAMPMFRYEIEALRFLC