AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38526


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38526.t1 MTR_3g465930 89.530 468 40 1 1 459 1 468 0.0 874
MS.gene38526.t1 MTR_3g465910 85.928 469 52 4 1 458 1 466 0.0 833
MS.gene38526.t1 MTR_3g465950 76.765 439 99 3 1 438 1 437 0.0 684
MS.gene38526.t1 MTR_3g465980 67.167 466 136 6 1 455 1 460 0.0 641
MS.gene38526.t1 MTR_3g465990 65.451 466 144 6 1 455 1 460 0.0 628
MS.gene38526.t1 MTR_3g465870 69.697 462 104 6 1 459 1 429 0.0 627
MS.gene38526.t1 MTR_3g465880 65.890 472 139 8 1 455 1 467 0.0 621
MS.gene38526.t1 MTR_6g053810 59.101 467 171 8 1 452 1 462 0.0 537
MS.gene38526.t1 MTR_4g055170 47.527 465 213 11 7 455 9 458 2.93e-138 405
MS.gene38526.t1 MTR_2g015430 29.759 457 284 15 8 450 2 435 1.42e-56 194
MS.gene38526.t1 MTR_7g027175 30.152 461 275 17 3 450 10 436 1.60e-39 148
MS.gene38526.t1 MTR_8g096530 29.130 460 272 17 8 450 5 427 4.49e-36 138
MS.gene38526.t1 MTR_3g071320 28.928 401 247 14 10 391 5 386 6.88e-36 138
MS.gene38526.t1 MTR_1g040175 29.395 347 219 8 10 348 9 337 2.50e-35 137
MS.gene38526.t1 MTR_1g053315 29.978 447 275 19 18 445 26 453 5.64e-35 135
MS.gene38526.t1 MTR_3g098980 28.477 453 277 17 8 447 12 430 1.04e-34 134
MS.gene38526.t1 MTR_1g081660 26.096 456 302 14 8 452 16 447 1.05e-33 132
MS.gene38526.t1 MTR_7g110610 30.145 345 163 10 17 348 12 291 4.13e-33 129
MS.gene38526.t1 MTR_1g040215 26.368 402 264 11 4 397 3 380 2.98e-32 128
MS.gene38526.t1 MTR_5g076700 26.289 388 260 12 17 394 17 388 2.05e-31 125
MS.gene38526.t1 MTR_7g114520 28.926 363 236 12 8 363 9 356 6.69e-31 124
MS.gene38526.t1 MTR_7g114470 26.343 391 261 13 17 396 18 392 5.36e-30 122
MS.gene38526.t1 MTR_7g114550 27.066 351 238 8 17 363 17 353 2.01e-29 120
MS.gene38526.t1 MTR_7g114490 26.854 391 257 12 17 396 17 389 5.62e-28 116
MS.gene38526.t1 MTR_7g114560 26.836 354 235 10 17 363 17 353 1.41e-27 115
MS.gene38526.t1 MTR_2g105330 25.602 457 289 16 10 447 3 427 6.71e-27 112
MS.gene38526.t1 MTR_4g007540 26.170 470 287 18 10 458 3 433 3.06e-26 110
MS.gene38526.t1 MTR_2g064495 25.602 457 289 16 10 447 3 427 3.40e-26 110
MS.gene38526.t1 MTR_3g112180 26.022 465 253 19 18 446 20 429 5.95e-26 110
MS.gene38526.t1 MTR_8g075610 28.399 331 206 10 17 338 1 309 7.34e-26 109
MS.gene38526.t1 MTR_1g040315 25.876 371 235 11 4 364 3 343 2.80e-24 104
MS.gene38526.t1 MTR_3g049150 26.519 362 226 14 18 362 10 348 1.94e-23 102
MS.gene38526.t1 MTR_4g127650 27.049 366 230 13 18 364 18 365 2.40e-23 102
MS.gene38526.t1 MTR_4g097090 26.923 312 201 9 69 364 65 365 5.26e-22 98.6
MS.gene38526.t1 MTR_7g086000 26.133 375 231 16 18 365 12 367 1.15e-21 97.8
MS.gene38526.t1 MTR_1g040195 26.154 390 250 13 78 452 48 414 1.97e-21 96.7
MS.gene38526.t1 MTR_3g026950 25.281 356 219 12 18 350 10 341 2.11e-21 96.7
MS.gene38526.t1 MTR_1g040320 24.009 454 281 15 7 452 6 403 8.09e-21 94.7
MS.gene38526.t1 MTR_0502s0010 29.703 202 130 5 151 348 45 238 6.18e-19 86.3
MS.gene38526.t1 MTR_4g013050 26.480 321 189 11 49 363 32 311 3.80e-18 86.7
MS.gene38526.t1 MTR_3g102020 27.458 295 188 9 52 334 52 332 1.68e-17 85.1
MS.gene38526.t1 MTR_3g101960 27.243 301 189 8 51 337 50 334 8.46e-17 82.8
MS.gene38526.t1 MTR_0042s0190 27.778 180 120 5 172 348 1 173 1.01e-15 78.2
MS.gene38526.t1 MTR_7g114510 25.159 314 200 10 154 452 8 301 3.98e-15 76.6
MS.gene38526.t1 MTR_3g102010 26.335 281 170 9 61 320 54 318 6.62e-15 77.0
MS.gene38526.t1 MTR_3g101970 26.027 292 188 8 52 337 52 321 1.40e-13 72.8
MS.gene38526.t1 MTR_3g101900 25.175 286 172 9 69 334 66 329 3.52e-12 68.6
MS.gene38526.t1 MTR_3g101930 24.275 276 187 6 69 332 70 335 5.02e-12 68.2
MS.gene38526.t1 MTR_3g450710 23.642 313 196 10 69 356 65 359 3.51e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38526.t1 AT2G25150 39.186 467 245 13 8 456 11 456 5.32e-92 286
MS.gene38526.t1 AT5G07080 38.166 469 234 15 8 452 12 448 5.58e-92 286
MS.gene38526.t1 AT2G23510 38.998 459 247 14 8 452 11 450 7.92e-86 270
MS.gene38526.t1 AT3G47170 37.924 472 246 17 10 452 12 465 3.71e-84 266
MS.gene38526.t1 AT1G28680 33.987 459 270 15 6 450 2 441 2.10e-71 233
MS.gene38526.t1 AT1G28680 36.261 353 199 12 6 349 2 337 1.08e-58 198
MS.gene38526.t1 AT5G41040 29.360 453 278 15 8 448 15 437 3.35e-44 160
MS.gene38526.t1 AT5G41040 29.360 453 278 15 8 448 31 453 5.65e-44 160
MS.gene38526.t1 AT3G62160 29.291 437 248 15 16 435 11 403 3.92e-42 155
MS.gene38526.t1 AT3G48720 30.425 447 259 20 17 447 16 426 2.41e-40 150
MS.gene38526.t1 AT5G63560 30.424 401 241 15 8 396 7 381 9.71e-34 132
MS.gene38526.t1 AT3G03480 26.039 457 303 11 7 452 16 448 3.21e-33 130
MS.gene38526.t1 AT5G17540 27.273 462 292 15 7 452 6 439 1.82e-31 126
MS.gene38526.t1 AT1G03390 27.981 411 261 14 20 414 32 423 1.30e-29 120
MS.gene38526.t1 AT5G48930 27.518 407 247 16 8 391 1 382 4.09e-28 116
MS.gene38526.t1 AT1G27620 26.872 454 273 18 11 446 10 422 5.56e-28 115
MS.gene38526.t1 AT2G40230 27.621 391 261 11 10 391 5 382 2.51e-27 114
MS.gene38526.t1 AT2G19070 26.464 461 279 20 18 446 12 444 6.02e-22 98.6
MS.gene38526.t1 AT5G57840 27.147 361 206 14 8 344 1 328 1.42e-18 88.2
MS.gene38526.t1 AT1G24430 30.061 326 185 19 17 334 12 302 2.23e-17 84.7
MS.gene38526.t1 AT1G65450 27.346 373 206 16 46 386 53 392 1.32e-15 79.3
MS.gene38526.t1 AT5G47950 31.527 203 106 10 7 199 3 182 1.25e-11 66.6

Find 79 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATTACTACTAAGCTTTA+AGG 0.128944 3.4:+61575603 None:intergenic
AATACCAACGGTACTGAATT+TGG 0.155661 3.4:-61576156 MS.gene38526:CDS
TTTCACGAAAATATTGATTT+TGG 0.166223 3.4:-61575223 MS.gene38526:CDS
AGGACGAAATTGAAGCTTTA+AGG 0.184665 3.4:-61575036 MS.gene38526:CDS
CAACAACTGCTTTGATGAAT+TGG 0.208789 3.4:+61575917 None:intergenic
AAGTTACCCTTCGGTGTTAA+TGG 0.236220 3.4:-61576016 MS.gene38526:CDS
ACTTTACCTAAAGGGTATTA+TGG 0.240183 3.4:-61575526 MS.gene38526:CDS
AGTTAGGGCAATGTTATTAT+TGG 0.269128 3.4:+61577471 None:intergenic
CTTTGTGGTGGTTTCACAAT+TGG 0.270838 3.4:-61575982 MS.gene38526:CDS
ATACCAACGGTACTGAATTT+GGG 0.304721 3.4:-61576155 MS.gene38526:CDS
CTAACTCCTCCTTCCATTGA+TGG 0.334307 3.4:+61575100 None:intergenic
CACAGAAATTGCAAAACATT+TGG 0.334670 3.4:-61576067 MS.gene38526:CDS
TTTGACAGAGTGGAAGCATT+TGG 0.350615 3.4:-61575248 MS.gene38526:CDS
AACTTAGGCATGGCATCAAC+AGG 0.352804 3.4:+61575061 None:intergenic
AGCCATCAGTGAAACCTGTT+TGG 0.365103 3.4:-61575873 MS.gene38526:CDS
GAATTGCCATAATACCCTTT+AGG 0.371067 3.4:+61575520 None:intergenic
CATTTCTTCTCTTCATTACC+TGG 0.377281 3.4:-61576100 MS.gene38526:CDS
TTGACAGAGTGGAAGCATTT+GGG 0.384091 3.4:-61575247 MS.gene38526:CDS
AAATTCAGTACCGTTGGTAT+TGG 0.387756 3.4:+61576158 None:intergenic
CTATCAACACTTGACAATAA+AGG 0.389671 3.4:-61577496 MS.gene38526:CDS
GTATTATGGCAATTCTACTA+TGG 0.400718 3.4:-61575512 MS.gene38526:CDS
TACATGACAAGGGTTGAAAC+TGG 0.406337 3.4:+61577405 None:intergenic
ATTATGATACTTTACCTAAA+GGG 0.416811 3.4:-61575534 MS.gene38526:CDS
GTTTCTTTACTCGATGTTGT+AGG 0.420009 3.4:-61575014 None:intergenic
CATCAATGGAAGGAGGAGTT+AGG 0.420940 3.4:-61575099 MS.gene38526:CDS
CATGCTATTTGTGACGGATT+TGG 0.423939 3.4:-61575946 MS.gene38526:CDS
TGGTATGAGACGTAACTTGA+TGG 0.424968 3.4:-61575557 MS.gene38526:CDS
AACAACTGCTTTGATGAATT+GGG 0.430658 3.4:+61575918 None:intergenic
ATCGGTATACATGAACAGTT+AGG 0.437646 3.4:+61577455 None:intergenic
TGATGCCATGCCTAAGTTCA+AGG 0.446582 3.4:-61575056 MS.gene38526:CDS
CAGGTAATGAAGAGAAGAAA+TGG 0.451124 3.4:+61576101 None:intergenic
GGTGGTTTCACAATTGGAAT+GGG 0.460166 3.4:-61575976 MS.gene38526:CDS
TCAATTTCGTCCTTGAACTT+AGG 0.461185 3.4:+61575046 None:intergenic
GCCATCAGTGAAACCTGTTT+GGG 0.462690 3.4:-61575872 MS.gene38526:CDS
GATTATGATACTTTACCTAA+AGG 0.466862 3.4:-61575535 MS.gene38526:CDS
TCCATGGGACATTGTGGAAA+TGG 0.468394 3.4:+61575814 None:intergenic
TGCAACAGATTCTCTGTCCA+TGG 0.476323 3.4:+61575798 None:intergenic
TGGTGGTTTCACAATTGGAA+TGG 0.478781 3.4:-61575977 MS.gene38526:CDS
ACAATGCTAAATATATTAGT+TGG 0.493633 3.4:-61575577 MS.gene38526:CDS
GATAGAGAAAGAATACAAGA+AGG 0.498935 3.4:+61577514 None:intergenic
AGAAAGAATACAAGAAGGGA+TGG 0.499295 3.4:+61577519 None:intergenic
TCCCAAACAGGTTTCACTGA+TGG 0.500640 3.4:+61575871 None:intergenic
CGATGATCATGATCCATCAA+TGG 0.508775 3.4:-61575113 MS.gene38526:CDS
TTTCTGTGTTAGTATTGTCC+AGG 0.512010 3.4:+61576082 None:intergenic
ATAGAGAAAGAATACAAGAA+GGG 0.521290 3.4:+61577515 None:intergenic
AGCAACCCTAAAGATTGAAA+AGG 0.526012 3.4:-61577572 MS.gene38526:CDS
TCTTGATATTCCTTCTCCCA+AGG 0.526970 3.4:-61576043 MS.gene38526:CDS
CAAGGATAAAAGTTACCCTT+CGG 0.529396 3.4:-61576025 MS.gene38526:CDS
AGCTTAACAATTTCATAGAG+TGG 0.539783 3.4:+61575448 None:intergenic
TACCAACGGTACTGAATTTG+GGG 0.542547 3.4:-61576154 MS.gene38526:CDS
GCAGTTGTTGAACTTGCAAG+TGG 0.559166 3.4:-61575904 MS.gene38526:CDS
TTCGTCCTTGAACTTAGGCA+TGG 0.563446 3.4:+61575051 None:intergenic
GTGACAAAGTTTCTTTGTGG+TGG 0.569090 3.4:-61575994 MS.gene38526:CDS
ATGTCACATGCTATTTGTGA+CGG 0.574392 3.4:-61575952 MS.gene38526:CDS
ATTGAATTCTACATAATCAG+TGG 0.574572 3.4:+61575396 None:intergenic
TCGGTATACATGAACAGTTA+GGG 0.590541 3.4:+61577456 None:intergenic
TCTCTGTCCATGGGACATTG+TGG 0.594054 3.4:+61575808 None:intergenic
TTTGTCACCATTAACACCGA+AGG 0.597755 3.4:+61576009 None:intergenic
ACCATTTCCACAATGTCCCA+TGG 0.598120 3.4:-61575815 MS.gene38526:CDS
CTTCTTTGAATACATGACAA+GGG 0.602919 3.4:+61577395 None:intergenic
AAGTGCTTGCAGGTTATGCG+TGG 0.605328 3.4:-61575642 MS.gene38526:CDS
AACCCCAAATTCAGTACCGT+TGG 0.605483 3.4:+61576152 None:intergenic
TTGTCACCATTAACACCGAA+GGG 0.606342 3.4:+61576010 None:intergenic
ATGGTGACAAAGTTTCTTTG+TGG 0.609696 3.4:-61575997 MS.gene38526:CDS
GCAACAGATTCTCTGTCCAT+GGG 0.618538 3.4:+61575799 None:intergenic
TCTTCTTTGAATACATGACA+AGG 0.619340 3.4:+61577394 None:intergenic
CATGAATTGCTGATGATGAT+CGG 0.619995 3.4:+61577437 None:intergenic
GATCATGATCCATCAATGGA+AGG 0.626301 3.4:-61575109 MS.gene38526:CDS
CTCCGTGGAGACAAATCAAG+AGG 0.634372 3.4:-61575314 MS.gene38526:intron
TCAAGAGGAGGATTTCAGCA+TGG 0.634848 3.4:-61575299 MS.gene38526:CDS
GTGGTTTCACAATTGGAATG+GGG 0.639088 3.4:-61575975 MS.gene38526:CDS
AGACTAGTGAGACATGCTGA+TGG 0.640547 3.4:-61576198 MS.gene38526:CDS
TGCTTGCAGGTTATGCGTGG+AGG 0.643318 3.4:-61575639 MS.gene38526:CDS
CATGATCCATCAATGGAAGG+AGG 0.654646 3.4:-61575106 MS.gene38526:CDS
AGAGTCAATGCCAATACCAA+CGG 0.657356 3.4:-61576168 MS.gene38526:CDS
CGTGGAGACAAATCAAGAGG+AGG 0.666183 3.4:-61575311 MS.gene38526:intron
ATTCAAAGAAGAGCTGTCGA+AGG 0.673355 3.4:-61577383 MS.gene38526:CDS
ACTTAGGCATGGCATCAACA+GGG 0.673752 3.4:+61575062 None:intergenic
AGCATGGAATTAGAAGCTAG+TGG 0.683172 3.4:-61575283 MS.gene38526:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATAAAAATGAAAAAAT+AGG - chr3.4:61576922-61576941 MS.gene38526:intron 10.0%
!! TGAATAAAAATGAAAAAATA+GGG - chr3.4:61576923-61576942 MS.gene38526:intron 10.0%
!!! AGAAAAAAAAAGTTTTATTT+AGG + chr3.4:61575563-61575582 None:intergenic 10.0%
!! AAAAGACTAATAATTACTAT+CGG + chr3.4:61575300-61575319 None:intergenic 15.0%
!! ATTCATCTACTATAAAAAAA+AGG + chr3.4:61575730-61575749 None:intergenic 15.0%
!! TAAATAAAGGTCATATATTA+TGG - chr3.4:61575749-61575768 MS.gene38526:CDS 15.0%
!! TATAGTAGATGAATAAATAA+AGG - chr3.4:61575736-61575755 MS.gene38526:CDS 15.0%
!! TTCATCTACTATAAAAAAAA+GGG + chr3.4:61575729-61575748 None:intergenic 15.0%
!!! AAACAATTTTTTTTCACATA+TGG - chr3.4:61576280-61576299 MS.gene38526:intron 15.0%
!!! CTATATTTTTAAAGTTAACA+CGG - chr3.4:61576023-61576042 MS.gene38526:CDS 15.0%
!!! CTTAAATGAAGTTTATTTTA+TGG + chr3.4:61575325-61575344 None:intergenic 15.0%
!!! TTCATTTAAGTTCTAAAATA+AGG - chr3.4:61575335-61575354 MS.gene38526:intron 15.0%
!! ACAATGCTAAATATATTAGT+TGG - chr3.4:61577024-61577043 MS.gene38526:intron 20.0%
!! ATTATGATACTTTACCTAAA+GGG - chr3.4:61577067-61577086 MS.gene38526:intron 20.0%
!! GTGAAAAAAAATTGTTTGTT+AGG + chr3.4:61576277-61576296 None:intergenic 20.0%
!!! ACCTCTAAAGTAAAAAATAT+AGG + chr3.4:61575898-61575917 None:intergenic 20.0%
!!! AGTATTAGTTTTATTCACAA+AGG + chr3.4:61576836-61576855 None:intergenic 20.0%
!!! CAATATTGTTTTAAAGTAGA+GGG - chr3.4:61576868-61576887 MS.gene38526:intron 20.0%
!!! CAATTTTTTTTTTCAGAAGA+TGG + chr3.4:61576356-61576375 None:intergenic 20.0%
!!! CATCTTCTGAAAAAAAAAAT+TGG - chr3.4:61576354-61576373 MS.gene38526:intron 20.0%
!!! GTATTAGTTTTATTCACAAA+GGG + chr3.4:61576835-61576854 None:intergenic 20.0%
!!! TCCTATATTTTTTACTTTAG+AGG - chr3.4:61575894-61575913 MS.gene38526:CDS 20.0%
!!! TTTCACGAAAATATTGATTT+TGG - chr3.4:61577378-61577397 MS.gene38526:CDS 20.0%
! AAAAATAGTATACCTGCTAA+AGG + chr3.4:61575261-61575280 None:intergenic 25.0%
! ATAGAGAAAGAATACAAGAA+GGG + chr3.4:61575089-61575108 None:intergenic 25.0%
! ATTGAATTCTACATAATCAG+TGG + chr3.4:61577208-61577227 None:intergenic 25.0%
! GATTATGATACTTTACCTAA+AGG - chr3.4:61577066-61577085 MS.gene38526:intron 25.0%
!! ATCTTCCTTTTCAATCTTTA+GGG + chr3.4:61575037-61575056 None:intergenic 25.0%
!! TTTTACTATTATCCTTTAGC+AGG - chr3.4:61575246-61575265 MS.gene38526:CDS 25.0%
!!! AACTTTTTTTCTTCTCTCTT+GGG - chr3.4:61575668-61575687 MS.gene38526:CDS 25.0%
!!! GCAATATTGTTTTAAAGTAG+AGG - chr3.4:61576867-61576886 MS.gene38526:intron 25.0%
AACAACTGCTTTGATGAATT+GGG + chr3.4:61576686-61576705 None:intergenic 30.0%
AGCTTAACAATTTCATAGAG+TGG + chr3.4:61577156-61577175 None:intergenic 30.0%
AGTTAGGGCAATGTTATTAT+TGG + chr3.4:61575133-61575152 None:intergenic 30.0%
CACAGAAATTGCAAAACATT+TGG - chr3.4:61576534-61576553 MS.gene38526:intron 30.0%
CTATCAACACTTGACAATAA+AGG - chr3.4:61575105-61575124 MS.gene38526:CDS 30.0%
CTTCTTTGAATACATGACAA+GGG + chr3.4:61575209-61575228 None:intergenic 30.0%
GATAGAGAAAGAATACAAGA+AGG + chr3.4:61575090-61575109 None:intergenic 30.0%
GTATTATGGCAATTCTACTA+TGG - chr3.4:61577089-61577108 MS.gene38526:intron 30.0%
GTCATTACTACTAAGCTTTA+AGG + chr3.4:61577001-61577020 None:intergenic 30.0%
TCTTCTTTGAATACATGACA+AGG + chr3.4:61575210-61575229 None:intergenic 30.0%
TGAAGCACATACACAAAATA+AGG - chr3.4:61575393-61575412 MS.gene38526:intron 30.0%
TGAGTGTTATATACAAGTGT+CGG + chr3.4:61575612-61575631 None:intergenic 30.0%
TTCAAAACAACTTCATAGAG+TGG + chr3.4:61577250-61577269 None:intergenic 30.0%
! ATTTTGTGTATGTGCTTCAT+AGG + chr3.4:61575392-61575411 None:intergenic 30.0%
! CATCTTCCTTTTCAATCTTT+AGG + chr3.4:61575038-61575057 None:intergenic 30.0%
!! ACTTTACCTAAAGGGTATTA+TGG - chr3.4:61577075-61577094 MS.gene38526:intron 30.0%
!!! CACGAAAATATTGATTTTGG+AGG - chr3.4:61577381-61577400 MS.gene38526:CDS 30.0%
!!! GAACTTTTTTTCTTCTCTCT+TGG - chr3.4:61575667-61575686 MS.gene38526:CDS 30.0%
!!! TTGTTGTTTGCTTGTTTTGT+AGG - chr3.4:61576379-61576398 MS.gene38526:intron 30.0%
AAACCAAAATTCTTTGGTCC+TGG - chr3.4:61576199-61576218 MS.gene38526:CDS 35.0%
AAATTCAGTACCGTTGGTAT+TGG + chr3.4:61576446-61576465 None:intergenic 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG - chr3.4:61576128-61576147 MS.gene38526:CDS 35.0%
AGAAAGAATACAAGAAGGGA+TGG + chr3.4:61575085-61575104 None:intergenic 35.0%
AGCAACCCTAAAGATTGAAA+AGG - chr3.4:61575029-61575048 MS.gene38526:CDS 35.0%
AGGACGAAATTGAAGCTTTA+AGG - chr3.4:61577565-61577584 MS.gene38526:CDS 35.0%
ATCGGTATACATGAACAGTT+AGG + chr3.4:61575149-61575168 None:intergenic 35.0%
ATGGTGACAAAGTTTCTTTG+TGG - chr3.4:61576604-61576623 MS.gene38526:intron 35.0%
ATTGCATTCAATAAACTCCG+TGG - chr3.4:61577272-61577291 MS.gene38526:intron 35.0%
CAACAACTGCTTTGATGAAT+TGG + chr3.4:61576687-61576706 None:intergenic 35.0%
CAAGGATAAAAGTTACCCTT+CGG - chr3.4:61576576-61576595 MS.gene38526:intron 35.0%
CAGGTAATGAAGAGAAGAAA+TGG + chr3.4:61576503-61576522 None:intergenic 35.0%
CATTTCTTCTCTTCATTACC+TGG - chr3.4:61576501-61576520 MS.gene38526:intron 35.0%
GAATTGCCATAATACCCTTT+AGG + chr3.4:61577084-61577103 None:intergenic 35.0%
GTGACCAAACCAAAATTCTT+TGG - chr3.4:61576193-61576212 MS.gene38526:CDS 35.0%
TCAATTTCGTCCTTGAACTT+AGG + chr3.4:61577558-61577577 None:intergenic 35.0%
TCGGTATACATGAACAGTTA+GGG + chr3.4:61575148-61575167 None:intergenic 35.0%
TGGGAAAGAGAAAAACAAGT+TGG - chr3.4:61576748-61576767 MS.gene38526:intron 35.0%
TTACTTCAACACTTCTACAC+CGG - chr3.4:61575583-61575602 MS.gene38526:CDS 35.0%
TTAGCAGTTGCTTCCAAAAA+TGG + chr3.4:61576475-61576494 None:intergenic 35.0%
TTTCTGTGTTAGTATTGTCC+AGG + chr3.4:61576522-61576541 None:intergenic 35.0%
! AATACCAACGGTACTGAATT+TGG - chr3.4:61576445-61576464 MS.gene38526:intron 35.0%
! ATACCAACGGTACTGAATTT+GGG - chr3.4:61576446-61576465 MS.gene38526:intron 35.0%
! ATGTCACATGCTATTTGTGA+CGG - chr3.4:61576649-61576668 MS.gene38526:intron 35.0%
! CATGAATTGCTGATGATGAT+CGG + chr3.4:61575167-61575186 None:intergenic 35.0%
! GAAGGGTAACTTTTATCCTT+GGG + chr3.4:61576577-61576596 None:intergenic 35.0%
! TAACTTTTATCCTTGGGAGA+AGG + chr3.4:61576571-61576590 None:intergenic 35.0%
! TGTTTTTCTCTTTCCCAAAC+AGG + chr3.4:61576745-61576764 None:intergenic 35.0%
!! TGAATTTGGGGTTCCATTTT+TGG - chr3.4:61576459-61576478 MS.gene38526:intron 35.0%
!!! AGGACCAAAGAATTTTGGTT+TGG + chr3.4:61576200-61576219 None:intergenic 35.0%
ACACACGAGAAAATCTTGTG+TGG - chr3.4:61576051-61576070 MS.gene38526:CDS 40.0%
AGAGTCAATGCCAATACCAA+CGG - chr3.4:61576433-61576452 MS.gene38526:intron 40.0%
AGCATGGAATTAGAAGCTAG+TGG - chr3.4:61577318-61577337 MS.gene38526:intron 40.0%
ATGAAGCATAGACTCCAACA+CGG + chr3.4:61575955-61575974 None:intergenic 40.0%
ATTCAAAGAAGAGCTGTCGA+AGG - chr3.4:61575218-61575237 MS.gene38526:CDS 40.0%
CGATGATCATGATCCATCAA+TGG - chr3.4:61577488-61577507 MS.gene38526:CDS 40.0%
CTTTGTGGTGGTTTCACAAT+TGG - chr3.4:61576619-61576638 MS.gene38526:intron 40.0%
GATCATGATCCATCAATGGA+AGG - chr3.4:61577492-61577511 MS.gene38526:CDS 40.0%
GGTGGTTTCACAATTGGAAT+GGG - chr3.4:61576625-61576644 MS.gene38526:intron 40.0%
GTGACAAAGTTTCTTTGTGG+TGG - chr3.4:61576607-61576626 MS.gene38526:intron 40.0%
GTGGTTTCACAATTGGAATG+GGG - chr3.4:61576626-61576645 MS.gene38526:intron 40.0%
TACATGACAAGGGTTGAAAC+TGG + chr3.4:61575199-61575218 None:intergenic 40.0%
TCTTGATATTCCTTCTCCCA+AGG - chr3.4:61576558-61576577 MS.gene38526:intron 40.0%
TGGTATGAGACGTAACTTGA+TGG - chr3.4:61577044-61577063 MS.gene38526:intron 40.0%
TGGTGGTTTCACAATTGGAA+TGG - chr3.4:61576624-61576643 MS.gene38526:intron 40.0%
TGTTGGAGTCTATGCTTCAT+AGG - chr3.4:61575955-61575974 MS.gene38526:CDS 40.0%
TTGTCACCATTAACACCGAA+GGG + chr3.4:61576594-61576613 None:intergenic 40.0%
TTTGTCACCATTAACACCGA+AGG + chr3.4:61576595-61576614 None:intergenic 40.0%
! AAGAGGTGTATGTGCTTCAT+AGG + chr3.4:61575450-61575469 None:intergenic 40.0%
! ACAGTAGCAAGCATTTTGCA+TGG + chr3.4:61577435-61577454 None:intergenic 40.0%
! CGAAGGGTAACTTTTATCCT+TGG + chr3.4:61576578-61576597 None:intergenic 40.0%
! GTTGATGAGAAACACTTGTG+TGG + chr3.4:61576226-61576245 None:intergenic 40.0%
! TACCAACGGTACTGAATTTG+GGG - chr3.4:61576447-61576466 MS.gene38526:intron 40.0%
! TGCAACACGTCTAGTTTAAG+AGG + chr3.4:61575467-61575486 None:intergenic 40.0%
!! AAGTTACCCTTCGGTGTTAA+TGG - chr3.4:61576585-61576604 MS.gene38526:intron 40.0%
!! CAAGAAGGGATGGATTTTGA+TGG + chr3.4:61575075-61575094 None:intergenic 40.0%
!! CATGCTATTTGTGACGGATT+TGG - chr3.4:61576655-61576674 MS.gene38526:intron 40.0%
!! TATATACAAGTGTCGGACAC+CGG + chr3.4:61575605-61575624 None:intergenic 40.0%
!! TTGACAGAGTGGAAGCATTT+GGG - chr3.4:61577354-61577373 MS.gene38526:intron 40.0%
!! TTTGACAGAGTGGAAGCATT+TGG - chr3.4:61577353-61577372 MS.gene38526:intron 40.0%
!!! ACAACTTTTGAAGTGCTTGC+AGG - chr3.4:61576949-61576968 MS.gene38526:intron 40.0%
!!! CAGTAACTGTTTTGACAGAG+TGG - chr3.4:61577343-61577362 MS.gene38526:intron 40.0%
AAAGAGAACTTGTGTGGACC+AGG + chr3.4:61576078-61576097 None:intergenic 45.0%
AACACTCATACGAGTCGTGT+CGG - chr3.4:61575624-61575643 MS.gene38526:CDS 45.0%
AACCCCAAATTCAGTACCGT+TGG + chr3.4:61576452-61576471 None:intergenic 45.0%
AACTTAGGCATGGCATCAAC+AGG + chr3.4:61577543-61577562 None:intergenic 45.0%
ACCATTTCCACAATGTCCCA+TGG - chr3.4:61576786-61576805 MS.gene38526:intron 45.0%
ACGTGTCGTATGAGTGTCAT+AGG + chr3.4:61575519-61575538 None:intergenic 45.0%
ACTTAGGCATGGCATCAACA+GGG + chr3.4:61577542-61577561 None:intergenic 45.0%
AGACTAGTGAGACATGCTGA+TGG - chr3.4:61576403-61576422 MS.gene38526:intron 45.0%
AGCCATCAGTGAAACCTGTT+TGG - chr3.4:61576728-61576747 MS.gene38526:intron 45.0%
CATCAATGGAAGGAGGAGTT+AGG - chr3.4:61577502-61577521 MS.gene38526:CDS 45.0%
CATGATCCATCAATGGAAGG+AGG - chr3.4:61577495-61577514 MS.gene38526:CDS 45.0%
CTAACTCCTCCTTCCATTGA+TGG + chr3.4:61577504-61577523 None:intergenic 45.0%
GAGAAAATCTTGTGTGGTCC+TGG - chr3.4:61576057-61576076 MS.gene38526:CDS 45.0%
GCAACAGATTCTCTGTCCAT+GGG + chr3.4:61576805-61576824 None:intergenic 45.0%
GCAGTTGTTGAACTTGCAAG+TGG - chr3.4:61576697-61576716 MS.gene38526:intron 45.0%
GCCATCAGTGAAACCTGTTT+GGG - chr3.4:61576729-61576748 MS.gene38526:intron 45.0%
GTGACCAAAGAGAACTTGTG+TGG + chr3.4:61576084-61576103 None:intergenic 45.0%
TCAAGAGGAGGATTTCAGCA+TGG - chr3.4:61577302-61577321 MS.gene38526:intron 45.0%
TCCATGGGACATTGTGGAAA+TGG + chr3.4:61576790-61576809 None:intergenic 45.0%
TCCCAAACAGGTTTCACTGA+TGG + chr3.4:61576733-61576752 None:intergenic 45.0%
TGATGCCATGCCTAAGTTCA+AGG - chr3.4:61577545-61577564 MS.gene38526:CDS 45.0%
TGCAACAGATTCTCTGTCCA+TGG + chr3.4:61576806-61576825 None:intergenic 45.0%
TGGTCCACACAAGTTCTCTT+TGG - chr3.4:61576077-61576096 MS.gene38526:CDS 45.0%
TTCGTCCTTGAACTTAGGCA+TGG + chr3.4:61577553-61577572 None:intergenic 45.0%
! GGACCAGGACCAAAGAATTT+TGG + chr3.4:61576205-61576224 None:intergenic 45.0%
!! CTCCTCTTGATTTGTCTCCA+CGG + chr3.4:61577292-61577311 None:intergenic 45.0%
!! ATAAATTAATATTTATATAG+CGG - chr3.4:61575863-61575882 MS.gene38526:CDS 5.0%
AAGTGCTTGCAGGTTATGCG+TGG - chr3.4:61576959-61576978 MS.gene38526:intron 50.0%
CGCCTGACACAATACTGACA+CGG + chr3.4:61575931-61575950 None:intergenic 50.0%
CGTGGAGACAAATCAAGAGG+AGG - chr3.4:61577290-61577309 MS.gene38526:intron 50.0%
CTCCGTGGAGACAAATCAAG+AGG - chr3.4:61577287-61577306 MS.gene38526:intron 50.0%
GAGAAACACTTGTGTGGACC+AGG + chr3.4:61576220-61576239 None:intergenic 50.0%
GTCCGTGTCAGTATTGTGTC+AGG - chr3.4:61575926-61575945 MS.gene38526:CDS 50.0%
TCTCTGTCCATGGGACATTG+TGG + chr3.4:61576796-61576815 None:intergenic 50.0%
! GCAAGCATTTTGCATGGTGC+TGG + chr3.4:61577429-61577448 None:intergenic 50.0%
ATTGTGTCAGGCGTCCGTGT+TGG - chr3.4:61575938-61575957 MS.gene38526:CDS 55.0%
TGCTTGCAGGTTATGCGTGG+AGG - chr3.4:61576962-61576981 MS.gene38526:intron 55.0%
TTGCAGTGTTCGACACGCGT+CGG - chr3.4:61575482-61575501 MS.gene38526:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 61575015 61577608 61575015 ID=MS.gene38526
chr3.4 mRNA 61575015 61577608 61575015 ID=MS.gene38526.t1;Parent=MS.gene38526
chr3.4 exon 61577356 61577608 61577356 ID=MS.gene38526.t1.exon1;Parent=MS.gene38526.t1
chr3.4 CDS 61577356 61577608 61577356 ID=cds.MS.gene38526.t1;Parent=MS.gene38526.t1
chr3.4 exon 61575408 61576222 61575408 ID=MS.gene38526.t1.exon2;Parent=MS.gene38526.t1
chr3.4 CDS 61575408 61576222 61575408 ID=cds.MS.gene38526.t1;Parent=MS.gene38526.t1
chr3.4 exon 61575015 61575326 61575015 ID=MS.gene38526.t1.exon3;Parent=MS.gene38526.t1
chr3.4 CDS 61575015 61575326 61575015 ID=cds.MS.gene38526.t1;Parent=MS.gene38526.t1
Gene Sequence

>MS.gene38526

ATGGAATATGAGAAAGCAACCCTAAAGATTGAAAAGGAAGATGTTTTGCTTGTAAAGCCATCAAAATCCATCCCTTCTTGTATTCTTTCTCTATCAACACTTGACAATAAAGGTGCCAATAATAACATTGCCCTAACTGTTCATGTATACCGATCATCATCAGCAATTCATGATTATCATTCCAGTTTCAACCCTTGTCATGTATTCAAAGAAGAGCTGTCGAAGGCTTTGTTTTACTATTATCCTTTAGCAGGTATACTATTTTTTTTTCTTTAAGAACAACCGATAGTAATTATTAGTCTTTTCACCATAAAATAAACTTCATTTAAGTTCTAAAATAAGGAGAGTACAATCAATTTGTCTATAAGATGTAACCTATGAAGCACATACACAAAATAAGGAGAGTACAATCAATTTGTCTATAAGATGTAACCTATGAAGCACATACACCTCTTAAACTAGACGTGTTGCAGTGTTCGACACGCGTCGGTGTTCGACAGTCCTATGACACTCATACGACACGTGTCGAACAACTAATATTGTGTCCTAAATAAAACTTTTTTTTTCTTTACTTCAACACTTCTACACCGGTGTCCGACACTTGTATATAACACTCATACGAGTCGTGTCGGACAACTCAGACAAATATCTAGAACTTTTTTTCTTCTCTCTTGGGAGTTATAGAAATTAAAGTTAATTACAATATTTTTACCCTTTTTTTTATAGTAGATGAATAAATAAAGGTCATATATTATGGTATCTTGTTTTAGAACTTTTTTCAAAGAAATAAATTGCTTAAGTTAGATGCTTATGTATGTGTTTTGATTTTCATTTTAGACTGTCTATAAATAAATTAATATTTATATAGCGGTGTCATTGTCCTATATTTTTTACTTTAGAGGTGTCGATTTGTCCGTGTCAGTATTGTGTCAGGCGTCCGTGTTGGAGTCTATGCTTCATAGGATGTAACAAAAGAAAAGTTTGACTATGAGTTGAAACATTTTTCATCTATATTTTTAAAGTTAACACGGTATCAACACACGAGAAAATCTTGTGTGGTCCTGGTCCACACAAGTTCTCTTTGGTCACACAAAGAGAAAAAAGAGAAGAGAGAAGAGAGAAGAGAGAGAAAATGGAGAAGAGAGAAGAGAAGAGAGAGAAGAAAAAAACTTGTGTGTGTGACCAAACCAAAATTCTTTGGTCCTGGTCCACACAAGTGTTTCTCATCAACACACATAGAAATTTCAGTAGCGAAAAGTCCTAACAAACAATTTTTTTTCACATATGGCTAATAGTCAAGAATAATGAAAGATTCACAAACATTAAATGCATTTGCATCCATCTTCTGAAAAAAAAAATTGGTTTTGTTGTTTGCTTGTTTTGTAGGTAGACTAGTGAGACATGCTGATGGAAAATTTAGAGTCAATGCCAATACCAACGGTACTGAATTTGGGGTTCCATTTTTGGAAGCAACTGCTAATTGCACCATTTCTTCTCTTCATTACCTGGACAATACTAACACAGAAATTGCAAAACATTTGGTTCTTGATATTCCTTCTCCCAAGGATAAAAGTTACCCTTCGGTGTTAATGGTGACAAAGTTTCTTTGTGGTGGTTTCACAATTGGAATGGGGATGTCACATGCTATTTGTGACGGATTTGGTGCATCCCAATTCATCAAAGCAGTTGTTGAACTTGCAAGTGGAAGAACTGAGCCATCAGTGAAACCTGTTTGGGAAAGAGAAAAACAAGTTGGAACAATAACTACACAACCATTTCCACAATGTCCCATGGACAGAGAATCTGTTGCATTTTCACCCTTTGTGAATAAAACTAATACTACAATTATTAAGCAATATTGTTTTAAAGTAGAGGGCGAAACGATAACAAGACTTAAGTTGAGTTTGATGAATAAAAATGAAAAAATAGGGTTTACAACTTTTGAAGTGCTTGCAGGTTATGCGTGGAGGTCAAGAGCAAGAGCCTTAAAGCTTAGTAGTAATGACAAAACAATGCTAAATATATTAGTTGGTATGAGACGTAACTTGATGGATTATGATACTTTACCTAAAGGGTATTATGGCAATTCTACTATGGATGCAAAAGTTGTTTTGAAAGTTTGTGAGCTCAATGAAATGCCACTCTATGAAATTGTTAAGCTGATTAAAGAGACTAAAAATATTGCTTTCACCACTGATTATGTAGAATTCAATAAAGAGACTAAAAATTATGCCACTCTATGAAGTTGTTTTGAAATATTGCATTCAATAAACTCCGTGGAGACAAATCAAGAGGAGGATTTCAGCATGGAATTAGAAGCTAGTGGTGCAGTAACTGTTTTGACAGAGTGGAAGCATTTGGGTTTTCACGAAAATATTGATTTTGGAGGCTATGAATTTGTGAATTTAGTACCAGCACCATGCAAAATGCTTGCTACTGTTGATGTGTGCATTTTTTCGTCTTCTAATAAACTCGATGATCATGATCCATCAATGGAAGGAGGAGTTAGGATTTTCACATCACTCCCTGTTGATGCCATGCCTAAGTTCAAGGACGAAATTGAAGCTTTAAGGTTTCTTTACTCGATGTTGTAG

Protein sequence

>MS.gene38526.t1

MEYEKATLKIEKEDVLLVKPSKSIPSCILSLSTLDNKGANNNIALTVHVYRSSSAIHDYHSSFNPCHVFKEELSKALFYYYPLAGRLVRHADGKFRVNANTNGTEFGVPFLEATANCTISSLHYLDNTNTEIAKHLVLDIPSPKDKSYPSVLMVTKFLCGGFTIGMGMSHAICDGFGASQFIKAVVELASGRTEPSVKPVWEREKQVGTITTQPFPQCPMDRESVAFSPFVNKTNTTIIKQYCFKVEGETITRLKLSLMNKNEKIGFTTFEVLAGYAWRSRARALKLSSNDKTMLNILVGMRRNLMDYDTLPKGYYGNSTMDAKVVLKVCELNEMPLYEIVKLIKETKNIAFTTDYTNQEEDFSMELEASGAVTVLTEWKHLGFHENIDFGGYEFVNLVPAPCKMLATVDVCIFSSSNKLDDHDPSMEGGVRIFTSLPVDAMPKFKDEIEALRFLYSML