Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38526.t1 | XP_013460370.1 | 89.5 | 468 | 40 | 1 | 1 | 459 | 1 | 468 | 3.40E-241 | 844 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38526.t1 | Q8GYW8 | 39.2 | 467 | 245 | 13 | 8 | 456 | 11 | 456 | 9.4e-75 | 282.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38526.t1 | A0A072UZ79 | 89.5 | 468 | 40 | 1 | 1 | 459 | 1 | 468 | 2.4e-241 | 844.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38526.t1 | MTR_3g465930 | 89.530 | 468 | 40 | 1 | 1 | 459 | 1 | 468 | 0.0 | 874 |
MS.gene38526.t1 | MTR_3g465910 | 85.928 | 469 | 52 | 4 | 1 | 458 | 1 | 466 | 0.0 | 833 |
MS.gene38526.t1 | MTR_3g465950 | 76.765 | 439 | 99 | 3 | 1 | 438 | 1 | 437 | 0.0 | 684 |
MS.gene38526.t1 | MTR_3g465980 | 67.167 | 466 | 136 | 6 | 1 | 455 | 1 | 460 | 0.0 | 641 |
MS.gene38526.t1 | MTR_3g465990 | 65.451 | 466 | 144 | 6 | 1 | 455 | 1 | 460 | 0.0 | 628 |
MS.gene38526.t1 | MTR_3g465870 | 69.697 | 462 | 104 | 6 | 1 | 459 | 1 | 429 | 0.0 | 627 |
MS.gene38526.t1 | MTR_3g465880 | 65.890 | 472 | 139 | 8 | 1 | 455 | 1 | 467 | 0.0 | 621 |
MS.gene38526.t1 | MTR_6g053810 | 59.101 | 467 | 171 | 8 | 1 | 452 | 1 | 462 | 0.0 | 537 |
MS.gene38526.t1 | MTR_4g055170 | 47.527 | 465 | 213 | 11 | 7 | 455 | 9 | 458 | 2.93e-138 | 405 |
MS.gene38526.t1 | MTR_2g015430 | 29.759 | 457 | 284 | 15 | 8 | 450 | 2 | 435 | 1.42e-56 | 194 |
MS.gene38526.t1 | MTR_7g027175 | 30.152 | 461 | 275 | 17 | 3 | 450 | 10 | 436 | 1.60e-39 | 148 |
MS.gene38526.t1 | MTR_8g096530 | 29.130 | 460 | 272 | 17 | 8 | 450 | 5 | 427 | 4.49e-36 | 138 |
MS.gene38526.t1 | MTR_3g071320 | 28.928 | 401 | 247 | 14 | 10 | 391 | 5 | 386 | 6.88e-36 | 138 |
MS.gene38526.t1 | MTR_1g040175 | 29.395 | 347 | 219 | 8 | 10 | 348 | 9 | 337 | 2.50e-35 | 137 |
MS.gene38526.t1 | MTR_1g053315 | 29.978 | 447 | 275 | 19 | 18 | 445 | 26 | 453 | 5.64e-35 | 135 |
MS.gene38526.t1 | MTR_3g098980 | 28.477 | 453 | 277 | 17 | 8 | 447 | 12 | 430 | 1.04e-34 | 134 |
MS.gene38526.t1 | MTR_1g081660 | 26.096 | 456 | 302 | 14 | 8 | 452 | 16 | 447 | 1.05e-33 | 132 |
MS.gene38526.t1 | MTR_7g110610 | 30.145 | 345 | 163 | 10 | 17 | 348 | 12 | 291 | 4.13e-33 | 129 |
MS.gene38526.t1 | MTR_1g040215 | 26.368 | 402 | 264 | 11 | 4 | 397 | 3 | 380 | 2.98e-32 | 128 |
MS.gene38526.t1 | MTR_5g076700 | 26.289 | 388 | 260 | 12 | 17 | 394 | 17 | 388 | 2.05e-31 | 125 |
MS.gene38526.t1 | MTR_7g114520 | 28.926 | 363 | 236 | 12 | 8 | 363 | 9 | 356 | 6.69e-31 | 124 |
MS.gene38526.t1 | MTR_7g114470 | 26.343 | 391 | 261 | 13 | 17 | 396 | 18 | 392 | 5.36e-30 | 122 |
MS.gene38526.t1 | MTR_7g114550 | 27.066 | 351 | 238 | 8 | 17 | 363 | 17 | 353 | 2.01e-29 | 120 |
MS.gene38526.t1 | MTR_7g114490 | 26.854 | 391 | 257 | 12 | 17 | 396 | 17 | 389 | 5.62e-28 | 116 |
MS.gene38526.t1 | MTR_7g114560 | 26.836 | 354 | 235 | 10 | 17 | 363 | 17 | 353 | 1.41e-27 | 115 |
MS.gene38526.t1 | MTR_2g105330 | 25.602 | 457 | 289 | 16 | 10 | 447 | 3 | 427 | 6.71e-27 | 112 |
MS.gene38526.t1 | MTR_4g007540 | 26.170 | 470 | 287 | 18 | 10 | 458 | 3 | 433 | 3.06e-26 | 110 |
MS.gene38526.t1 | MTR_2g064495 | 25.602 | 457 | 289 | 16 | 10 | 447 | 3 | 427 | 3.40e-26 | 110 |
MS.gene38526.t1 | MTR_3g112180 | 26.022 | 465 | 253 | 19 | 18 | 446 | 20 | 429 | 5.95e-26 | 110 |
MS.gene38526.t1 | MTR_8g075610 | 28.399 | 331 | 206 | 10 | 17 | 338 | 1 | 309 | 7.34e-26 | 109 |
MS.gene38526.t1 | MTR_1g040315 | 25.876 | 371 | 235 | 11 | 4 | 364 | 3 | 343 | 2.80e-24 | 104 |
MS.gene38526.t1 | MTR_3g049150 | 26.519 | 362 | 226 | 14 | 18 | 362 | 10 | 348 | 1.94e-23 | 102 |
MS.gene38526.t1 | MTR_4g127650 | 27.049 | 366 | 230 | 13 | 18 | 364 | 18 | 365 | 2.40e-23 | 102 |
MS.gene38526.t1 | MTR_4g097090 | 26.923 | 312 | 201 | 9 | 69 | 364 | 65 | 365 | 5.26e-22 | 98.6 |
MS.gene38526.t1 | MTR_7g086000 | 26.133 | 375 | 231 | 16 | 18 | 365 | 12 | 367 | 1.15e-21 | 97.8 |
MS.gene38526.t1 | MTR_1g040195 | 26.154 | 390 | 250 | 13 | 78 | 452 | 48 | 414 | 1.97e-21 | 96.7 |
MS.gene38526.t1 | MTR_3g026950 | 25.281 | 356 | 219 | 12 | 18 | 350 | 10 | 341 | 2.11e-21 | 96.7 |
MS.gene38526.t1 | MTR_1g040320 | 24.009 | 454 | 281 | 15 | 7 | 452 | 6 | 403 | 8.09e-21 | 94.7 |
MS.gene38526.t1 | MTR_0502s0010 | 29.703 | 202 | 130 | 5 | 151 | 348 | 45 | 238 | 6.18e-19 | 86.3 |
MS.gene38526.t1 | MTR_4g013050 | 26.480 | 321 | 189 | 11 | 49 | 363 | 32 | 311 | 3.80e-18 | 86.7 |
MS.gene38526.t1 | MTR_3g102020 | 27.458 | 295 | 188 | 9 | 52 | 334 | 52 | 332 | 1.68e-17 | 85.1 |
MS.gene38526.t1 | MTR_3g101960 | 27.243 | 301 | 189 | 8 | 51 | 337 | 50 | 334 | 8.46e-17 | 82.8 |
MS.gene38526.t1 | MTR_0042s0190 | 27.778 | 180 | 120 | 5 | 172 | 348 | 1 | 173 | 1.01e-15 | 78.2 |
MS.gene38526.t1 | MTR_7g114510 | 25.159 | 314 | 200 | 10 | 154 | 452 | 8 | 301 | 3.98e-15 | 76.6 |
MS.gene38526.t1 | MTR_3g102010 | 26.335 | 281 | 170 | 9 | 61 | 320 | 54 | 318 | 6.62e-15 | 77.0 |
MS.gene38526.t1 | MTR_3g101970 | 26.027 | 292 | 188 | 8 | 52 | 337 | 52 | 321 | 1.40e-13 | 72.8 |
MS.gene38526.t1 | MTR_3g101900 | 25.175 | 286 | 172 | 9 | 69 | 334 | 66 | 329 | 3.52e-12 | 68.6 |
MS.gene38526.t1 | MTR_3g101930 | 24.275 | 276 | 187 | 6 | 69 | 332 | 70 | 335 | 5.02e-12 | 68.2 |
MS.gene38526.t1 | MTR_3g450710 | 23.642 | 313 | 196 | 10 | 69 | 356 | 65 | 359 | 3.51e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38526.t1 | AT2G25150 | 39.186 | 467 | 245 | 13 | 8 | 456 | 11 | 456 | 5.32e-92 | 286 |
MS.gene38526.t1 | AT5G07080 | 38.166 | 469 | 234 | 15 | 8 | 452 | 12 | 448 | 5.58e-92 | 286 |
MS.gene38526.t1 | AT2G23510 | 38.998 | 459 | 247 | 14 | 8 | 452 | 11 | 450 | 7.92e-86 | 270 |
MS.gene38526.t1 | AT3G47170 | 37.924 | 472 | 246 | 17 | 10 | 452 | 12 | 465 | 3.71e-84 | 266 |
MS.gene38526.t1 | AT1G28680 | 33.987 | 459 | 270 | 15 | 6 | 450 | 2 | 441 | 2.10e-71 | 233 |
MS.gene38526.t1 | AT1G28680 | 36.261 | 353 | 199 | 12 | 6 | 349 | 2 | 337 | 1.08e-58 | 198 |
MS.gene38526.t1 | AT5G41040 | 29.360 | 453 | 278 | 15 | 8 | 448 | 15 | 437 | 3.35e-44 | 160 |
MS.gene38526.t1 | AT5G41040 | 29.360 | 453 | 278 | 15 | 8 | 448 | 31 | 453 | 5.65e-44 | 160 |
MS.gene38526.t1 | AT3G62160 | 29.291 | 437 | 248 | 15 | 16 | 435 | 11 | 403 | 3.92e-42 | 155 |
MS.gene38526.t1 | AT3G48720 | 30.425 | 447 | 259 | 20 | 17 | 447 | 16 | 426 | 2.41e-40 | 150 |
MS.gene38526.t1 | AT5G63560 | 30.424 | 401 | 241 | 15 | 8 | 396 | 7 | 381 | 9.71e-34 | 132 |
MS.gene38526.t1 | AT3G03480 | 26.039 | 457 | 303 | 11 | 7 | 452 | 16 | 448 | 3.21e-33 | 130 |
MS.gene38526.t1 | AT5G17540 | 27.273 | 462 | 292 | 15 | 7 | 452 | 6 | 439 | 1.82e-31 | 126 |
MS.gene38526.t1 | AT1G03390 | 27.981 | 411 | 261 | 14 | 20 | 414 | 32 | 423 | 1.30e-29 | 120 |
MS.gene38526.t1 | AT5G48930 | 27.518 | 407 | 247 | 16 | 8 | 391 | 1 | 382 | 4.09e-28 | 116 |
MS.gene38526.t1 | AT1G27620 | 26.872 | 454 | 273 | 18 | 11 | 446 | 10 | 422 | 5.56e-28 | 115 |
MS.gene38526.t1 | AT2G40230 | 27.621 | 391 | 261 | 11 | 10 | 391 | 5 | 382 | 2.51e-27 | 114 |
MS.gene38526.t1 | AT2G19070 | 26.464 | 461 | 279 | 20 | 18 | 446 | 12 | 444 | 6.02e-22 | 98.6 |
MS.gene38526.t1 | AT5G57840 | 27.147 | 361 | 206 | 14 | 8 | 344 | 1 | 328 | 1.42e-18 | 88.2 |
MS.gene38526.t1 | AT1G24430 | 30.061 | 326 | 185 | 19 | 17 | 334 | 12 | 302 | 2.23e-17 | 84.7 |
MS.gene38526.t1 | AT1G65450 | 27.346 | 373 | 206 | 16 | 46 | 386 | 53 | 392 | 1.32e-15 | 79.3 |
MS.gene38526.t1 | AT5G47950 | 31.527 | 203 | 106 | 10 | 7 | 199 | 3 | 182 | 1.25e-11 | 66.6 |
Find 79 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCATTACTACTAAGCTTTA+AGG | 0.128944 | 3.4:+61575603 | None:intergenic |
AATACCAACGGTACTGAATT+TGG | 0.155661 | 3.4:-61576156 | MS.gene38526:CDS |
TTTCACGAAAATATTGATTT+TGG | 0.166223 | 3.4:-61575223 | MS.gene38526:CDS |
AGGACGAAATTGAAGCTTTA+AGG | 0.184665 | 3.4:-61575036 | MS.gene38526:CDS |
CAACAACTGCTTTGATGAAT+TGG | 0.208789 | 3.4:+61575917 | None:intergenic |
AAGTTACCCTTCGGTGTTAA+TGG | 0.236220 | 3.4:-61576016 | MS.gene38526:CDS |
ACTTTACCTAAAGGGTATTA+TGG | 0.240183 | 3.4:-61575526 | MS.gene38526:CDS |
AGTTAGGGCAATGTTATTAT+TGG | 0.269128 | 3.4:+61577471 | None:intergenic |
CTTTGTGGTGGTTTCACAAT+TGG | 0.270838 | 3.4:-61575982 | MS.gene38526:CDS |
ATACCAACGGTACTGAATTT+GGG | 0.304721 | 3.4:-61576155 | MS.gene38526:CDS |
CTAACTCCTCCTTCCATTGA+TGG | 0.334307 | 3.4:+61575100 | None:intergenic |
CACAGAAATTGCAAAACATT+TGG | 0.334670 | 3.4:-61576067 | MS.gene38526:CDS |
TTTGACAGAGTGGAAGCATT+TGG | 0.350615 | 3.4:-61575248 | MS.gene38526:CDS |
AACTTAGGCATGGCATCAAC+AGG | 0.352804 | 3.4:+61575061 | None:intergenic |
AGCCATCAGTGAAACCTGTT+TGG | 0.365103 | 3.4:-61575873 | MS.gene38526:CDS |
GAATTGCCATAATACCCTTT+AGG | 0.371067 | 3.4:+61575520 | None:intergenic |
CATTTCTTCTCTTCATTACC+TGG | 0.377281 | 3.4:-61576100 | MS.gene38526:CDS |
TTGACAGAGTGGAAGCATTT+GGG | 0.384091 | 3.4:-61575247 | MS.gene38526:CDS |
AAATTCAGTACCGTTGGTAT+TGG | 0.387756 | 3.4:+61576158 | None:intergenic |
CTATCAACACTTGACAATAA+AGG | 0.389671 | 3.4:-61577496 | MS.gene38526:CDS |
GTATTATGGCAATTCTACTA+TGG | 0.400718 | 3.4:-61575512 | MS.gene38526:CDS |
TACATGACAAGGGTTGAAAC+TGG | 0.406337 | 3.4:+61577405 | None:intergenic |
ATTATGATACTTTACCTAAA+GGG | 0.416811 | 3.4:-61575534 | MS.gene38526:CDS |
GTTTCTTTACTCGATGTTGT+AGG | 0.420009 | 3.4:-61575014 | None:intergenic |
CATCAATGGAAGGAGGAGTT+AGG | 0.420940 | 3.4:-61575099 | MS.gene38526:CDS |
CATGCTATTTGTGACGGATT+TGG | 0.423939 | 3.4:-61575946 | MS.gene38526:CDS |
TGGTATGAGACGTAACTTGA+TGG | 0.424968 | 3.4:-61575557 | MS.gene38526:CDS |
AACAACTGCTTTGATGAATT+GGG | 0.430658 | 3.4:+61575918 | None:intergenic |
ATCGGTATACATGAACAGTT+AGG | 0.437646 | 3.4:+61577455 | None:intergenic |
TGATGCCATGCCTAAGTTCA+AGG | 0.446582 | 3.4:-61575056 | MS.gene38526:CDS |
CAGGTAATGAAGAGAAGAAA+TGG | 0.451124 | 3.4:+61576101 | None:intergenic |
GGTGGTTTCACAATTGGAAT+GGG | 0.460166 | 3.4:-61575976 | MS.gene38526:CDS |
TCAATTTCGTCCTTGAACTT+AGG | 0.461185 | 3.4:+61575046 | None:intergenic |
GCCATCAGTGAAACCTGTTT+GGG | 0.462690 | 3.4:-61575872 | MS.gene38526:CDS |
GATTATGATACTTTACCTAA+AGG | 0.466862 | 3.4:-61575535 | MS.gene38526:CDS |
TCCATGGGACATTGTGGAAA+TGG | 0.468394 | 3.4:+61575814 | None:intergenic |
TGCAACAGATTCTCTGTCCA+TGG | 0.476323 | 3.4:+61575798 | None:intergenic |
TGGTGGTTTCACAATTGGAA+TGG | 0.478781 | 3.4:-61575977 | MS.gene38526:CDS |
ACAATGCTAAATATATTAGT+TGG | 0.493633 | 3.4:-61575577 | MS.gene38526:CDS |
GATAGAGAAAGAATACAAGA+AGG | 0.498935 | 3.4:+61577514 | None:intergenic |
AGAAAGAATACAAGAAGGGA+TGG | 0.499295 | 3.4:+61577519 | None:intergenic |
TCCCAAACAGGTTTCACTGA+TGG | 0.500640 | 3.4:+61575871 | None:intergenic |
CGATGATCATGATCCATCAA+TGG | 0.508775 | 3.4:-61575113 | MS.gene38526:CDS |
TTTCTGTGTTAGTATTGTCC+AGG | 0.512010 | 3.4:+61576082 | None:intergenic |
ATAGAGAAAGAATACAAGAA+GGG | 0.521290 | 3.4:+61577515 | None:intergenic |
AGCAACCCTAAAGATTGAAA+AGG | 0.526012 | 3.4:-61577572 | MS.gene38526:CDS |
TCTTGATATTCCTTCTCCCA+AGG | 0.526970 | 3.4:-61576043 | MS.gene38526:CDS |
CAAGGATAAAAGTTACCCTT+CGG | 0.529396 | 3.4:-61576025 | MS.gene38526:CDS |
AGCTTAACAATTTCATAGAG+TGG | 0.539783 | 3.4:+61575448 | None:intergenic |
TACCAACGGTACTGAATTTG+GGG | 0.542547 | 3.4:-61576154 | MS.gene38526:CDS |
GCAGTTGTTGAACTTGCAAG+TGG | 0.559166 | 3.4:-61575904 | MS.gene38526:CDS |
TTCGTCCTTGAACTTAGGCA+TGG | 0.563446 | 3.4:+61575051 | None:intergenic |
GTGACAAAGTTTCTTTGTGG+TGG | 0.569090 | 3.4:-61575994 | MS.gene38526:CDS |
ATGTCACATGCTATTTGTGA+CGG | 0.574392 | 3.4:-61575952 | MS.gene38526:CDS |
ATTGAATTCTACATAATCAG+TGG | 0.574572 | 3.4:+61575396 | None:intergenic |
TCGGTATACATGAACAGTTA+GGG | 0.590541 | 3.4:+61577456 | None:intergenic |
TCTCTGTCCATGGGACATTG+TGG | 0.594054 | 3.4:+61575808 | None:intergenic |
TTTGTCACCATTAACACCGA+AGG | 0.597755 | 3.4:+61576009 | None:intergenic |
ACCATTTCCACAATGTCCCA+TGG | 0.598120 | 3.4:-61575815 | MS.gene38526:CDS |
CTTCTTTGAATACATGACAA+GGG | 0.602919 | 3.4:+61577395 | None:intergenic |
AAGTGCTTGCAGGTTATGCG+TGG | 0.605328 | 3.4:-61575642 | MS.gene38526:CDS |
AACCCCAAATTCAGTACCGT+TGG | 0.605483 | 3.4:+61576152 | None:intergenic |
TTGTCACCATTAACACCGAA+GGG | 0.606342 | 3.4:+61576010 | None:intergenic |
ATGGTGACAAAGTTTCTTTG+TGG | 0.609696 | 3.4:-61575997 | MS.gene38526:CDS |
GCAACAGATTCTCTGTCCAT+GGG | 0.618538 | 3.4:+61575799 | None:intergenic |
TCTTCTTTGAATACATGACA+AGG | 0.619340 | 3.4:+61577394 | None:intergenic |
CATGAATTGCTGATGATGAT+CGG | 0.619995 | 3.4:+61577437 | None:intergenic |
GATCATGATCCATCAATGGA+AGG | 0.626301 | 3.4:-61575109 | MS.gene38526:CDS |
CTCCGTGGAGACAAATCAAG+AGG | 0.634372 | 3.4:-61575314 | MS.gene38526:intron |
TCAAGAGGAGGATTTCAGCA+TGG | 0.634848 | 3.4:-61575299 | MS.gene38526:CDS |
GTGGTTTCACAATTGGAATG+GGG | 0.639088 | 3.4:-61575975 | MS.gene38526:CDS |
AGACTAGTGAGACATGCTGA+TGG | 0.640547 | 3.4:-61576198 | MS.gene38526:CDS |
TGCTTGCAGGTTATGCGTGG+AGG | 0.643318 | 3.4:-61575639 | MS.gene38526:CDS |
CATGATCCATCAATGGAAGG+AGG | 0.654646 | 3.4:-61575106 | MS.gene38526:CDS |
AGAGTCAATGCCAATACCAA+CGG | 0.657356 | 3.4:-61576168 | MS.gene38526:CDS |
CGTGGAGACAAATCAAGAGG+AGG | 0.666183 | 3.4:-61575311 | MS.gene38526:intron |
ATTCAAAGAAGAGCTGTCGA+AGG | 0.673355 | 3.4:-61577383 | MS.gene38526:CDS |
ACTTAGGCATGGCATCAACA+GGG | 0.673752 | 3.4:+61575062 | None:intergenic |
AGCATGGAATTAGAAGCTAG+TGG | 0.683172 | 3.4:-61575283 | MS.gene38526:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGAATAAAAATGAAAAAAT+AGG | - | chr3.4:61576922-61576941 | MS.gene38526:intron | 10.0% |
!! | TGAATAAAAATGAAAAAATA+GGG | - | chr3.4:61576923-61576942 | MS.gene38526:intron | 10.0% |
!!! | AGAAAAAAAAAGTTTTATTT+AGG | + | chr3.4:61575563-61575582 | None:intergenic | 10.0% |
!! | AAAAGACTAATAATTACTAT+CGG | + | chr3.4:61575300-61575319 | None:intergenic | 15.0% |
!! | ATTCATCTACTATAAAAAAA+AGG | + | chr3.4:61575730-61575749 | None:intergenic | 15.0% |
!! | TAAATAAAGGTCATATATTA+TGG | - | chr3.4:61575749-61575768 | MS.gene38526:CDS | 15.0% |
!! | TATAGTAGATGAATAAATAA+AGG | - | chr3.4:61575736-61575755 | MS.gene38526:CDS | 15.0% |
!! | TTCATCTACTATAAAAAAAA+GGG | + | chr3.4:61575729-61575748 | None:intergenic | 15.0% |
!!! | AAACAATTTTTTTTCACATA+TGG | - | chr3.4:61576280-61576299 | MS.gene38526:intron | 15.0% |
!!! | CTATATTTTTAAAGTTAACA+CGG | - | chr3.4:61576023-61576042 | MS.gene38526:CDS | 15.0% |
!!! | CTTAAATGAAGTTTATTTTA+TGG | + | chr3.4:61575325-61575344 | None:intergenic | 15.0% |
!!! | TTCATTTAAGTTCTAAAATA+AGG | - | chr3.4:61575335-61575354 | MS.gene38526:intron | 15.0% |
!! | ACAATGCTAAATATATTAGT+TGG | - | chr3.4:61577024-61577043 | MS.gene38526:intron | 20.0% |
!! | ATTATGATACTTTACCTAAA+GGG | - | chr3.4:61577067-61577086 | MS.gene38526:intron | 20.0% |
!! | GTGAAAAAAAATTGTTTGTT+AGG | + | chr3.4:61576277-61576296 | None:intergenic | 20.0% |
!!! | ACCTCTAAAGTAAAAAATAT+AGG | + | chr3.4:61575898-61575917 | None:intergenic | 20.0% |
!!! | AGTATTAGTTTTATTCACAA+AGG | + | chr3.4:61576836-61576855 | None:intergenic | 20.0% |
!!! | CAATATTGTTTTAAAGTAGA+GGG | - | chr3.4:61576868-61576887 | MS.gene38526:intron | 20.0% |
!!! | CAATTTTTTTTTTCAGAAGA+TGG | + | chr3.4:61576356-61576375 | None:intergenic | 20.0% |
!!! | CATCTTCTGAAAAAAAAAAT+TGG | - | chr3.4:61576354-61576373 | MS.gene38526:intron | 20.0% |
!!! | GTATTAGTTTTATTCACAAA+GGG | + | chr3.4:61576835-61576854 | None:intergenic | 20.0% |
!!! | TCCTATATTTTTTACTTTAG+AGG | - | chr3.4:61575894-61575913 | MS.gene38526:CDS | 20.0% |
!!! | TTTCACGAAAATATTGATTT+TGG | - | chr3.4:61577378-61577397 | MS.gene38526:CDS | 20.0% |
! | AAAAATAGTATACCTGCTAA+AGG | + | chr3.4:61575261-61575280 | None:intergenic | 25.0% |
! | ATAGAGAAAGAATACAAGAA+GGG | + | chr3.4:61575089-61575108 | None:intergenic | 25.0% |
! | ATTGAATTCTACATAATCAG+TGG | + | chr3.4:61577208-61577227 | None:intergenic | 25.0% |
! | GATTATGATACTTTACCTAA+AGG | - | chr3.4:61577066-61577085 | MS.gene38526:intron | 25.0% |
!! | ATCTTCCTTTTCAATCTTTA+GGG | + | chr3.4:61575037-61575056 | None:intergenic | 25.0% |
!! | TTTTACTATTATCCTTTAGC+AGG | - | chr3.4:61575246-61575265 | MS.gene38526:CDS | 25.0% |
!!! | AACTTTTTTTCTTCTCTCTT+GGG | - | chr3.4:61575668-61575687 | MS.gene38526:CDS | 25.0% |
!!! | GCAATATTGTTTTAAAGTAG+AGG | - | chr3.4:61576867-61576886 | MS.gene38526:intron | 25.0% |
AACAACTGCTTTGATGAATT+GGG | + | chr3.4:61576686-61576705 | None:intergenic | 30.0% | |
AGCTTAACAATTTCATAGAG+TGG | + | chr3.4:61577156-61577175 | None:intergenic | 30.0% | |
AGTTAGGGCAATGTTATTAT+TGG | + | chr3.4:61575133-61575152 | None:intergenic | 30.0% | |
CACAGAAATTGCAAAACATT+TGG | - | chr3.4:61576534-61576553 | MS.gene38526:intron | 30.0% | |
CTATCAACACTTGACAATAA+AGG | - | chr3.4:61575105-61575124 | MS.gene38526:CDS | 30.0% | |
CTTCTTTGAATACATGACAA+GGG | + | chr3.4:61575209-61575228 | None:intergenic | 30.0% | |
GATAGAGAAAGAATACAAGA+AGG | + | chr3.4:61575090-61575109 | None:intergenic | 30.0% | |
GTATTATGGCAATTCTACTA+TGG | - | chr3.4:61577089-61577108 | MS.gene38526:intron | 30.0% | |
GTCATTACTACTAAGCTTTA+AGG | + | chr3.4:61577001-61577020 | None:intergenic | 30.0% | |
TCTTCTTTGAATACATGACA+AGG | + | chr3.4:61575210-61575229 | None:intergenic | 30.0% | |
TGAAGCACATACACAAAATA+AGG | - | chr3.4:61575393-61575412 | MS.gene38526:intron | 30.0% | |
TGAGTGTTATATACAAGTGT+CGG | + | chr3.4:61575612-61575631 | None:intergenic | 30.0% | |
TTCAAAACAACTTCATAGAG+TGG | + | chr3.4:61577250-61577269 | None:intergenic | 30.0% | |
! | ATTTTGTGTATGTGCTTCAT+AGG | + | chr3.4:61575392-61575411 | None:intergenic | 30.0% |
! | CATCTTCCTTTTCAATCTTT+AGG | + | chr3.4:61575038-61575057 | None:intergenic | 30.0% |
!! | ACTTTACCTAAAGGGTATTA+TGG | - | chr3.4:61577075-61577094 | MS.gene38526:intron | 30.0% |
!!! | CACGAAAATATTGATTTTGG+AGG | - | chr3.4:61577381-61577400 | MS.gene38526:CDS | 30.0% |
!!! | GAACTTTTTTTCTTCTCTCT+TGG | - | chr3.4:61575667-61575686 | MS.gene38526:CDS | 30.0% |
!!! | TTGTTGTTTGCTTGTTTTGT+AGG | - | chr3.4:61576379-61576398 | MS.gene38526:intron | 30.0% |
AAACCAAAATTCTTTGGTCC+TGG | - | chr3.4:61576199-61576218 | MS.gene38526:CDS | 35.0% | |
AAATTCAGTACCGTTGGTAT+TGG | + | chr3.4:61576446-61576465 | None:intergenic | 35.0% | |
AAGAGAGAAGAGAGAGAAAA+TGG | - | chr3.4:61576128-61576147 | MS.gene38526:CDS | 35.0% | |
AGAAAGAATACAAGAAGGGA+TGG | + | chr3.4:61575085-61575104 | None:intergenic | 35.0% | |
AGCAACCCTAAAGATTGAAA+AGG | - | chr3.4:61575029-61575048 | MS.gene38526:CDS | 35.0% | |
AGGACGAAATTGAAGCTTTA+AGG | - | chr3.4:61577565-61577584 | MS.gene38526:CDS | 35.0% | |
ATCGGTATACATGAACAGTT+AGG | + | chr3.4:61575149-61575168 | None:intergenic | 35.0% | |
ATGGTGACAAAGTTTCTTTG+TGG | - | chr3.4:61576604-61576623 | MS.gene38526:intron | 35.0% | |
ATTGCATTCAATAAACTCCG+TGG | - | chr3.4:61577272-61577291 | MS.gene38526:intron | 35.0% | |
CAACAACTGCTTTGATGAAT+TGG | + | chr3.4:61576687-61576706 | None:intergenic | 35.0% | |
CAAGGATAAAAGTTACCCTT+CGG | - | chr3.4:61576576-61576595 | MS.gene38526:intron | 35.0% | |
CAGGTAATGAAGAGAAGAAA+TGG | + | chr3.4:61576503-61576522 | None:intergenic | 35.0% | |
CATTTCTTCTCTTCATTACC+TGG | - | chr3.4:61576501-61576520 | MS.gene38526:intron | 35.0% | |
GAATTGCCATAATACCCTTT+AGG | + | chr3.4:61577084-61577103 | None:intergenic | 35.0% | |
GTGACCAAACCAAAATTCTT+TGG | - | chr3.4:61576193-61576212 | MS.gene38526:CDS | 35.0% | |
TCAATTTCGTCCTTGAACTT+AGG | + | chr3.4:61577558-61577577 | None:intergenic | 35.0% | |
TCGGTATACATGAACAGTTA+GGG | + | chr3.4:61575148-61575167 | None:intergenic | 35.0% | |
TGGGAAAGAGAAAAACAAGT+TGG | - | chr3.4:61576748-61576767 | MS.gene38526:intron | 35.0% | |
TTACTTCAACACTTCTACAC+CGG | - | chr3.4:61575583-61575602 | MS.gene38526:CDS | 35.0% | |
TTAGCAGTTGCTTCCAAAAA+TGG | + | chr3.4:61576475-61576494 | None:intergenic | 35.0% | |
TTTCTGTGTTAGTATTGTCC+AGG | + | chr3.4:61576522-61576541 | None:intergenic | 35.0% | |
! | AATACCAACGGTACTGAATT+TGG | - | chr3.4:61576445-61576464 | MS.gene38526:intron | 35.0% |
! | ATACCAACGGTACTGAATTT+GGG | - | chr3.4:61576446-61576465 | MS.gene38526:intron | 35.0% |
! | ATGTCACATGCTATTTGTGA+CGG | - | chr3.4:61576649-61576668 | MS.gene38526:intron | 35.0% |
! | CATGAATTGCTGATGATGAT+CGG | + | chr3.4:61575167-61575186 | None:intergenic | 35.0% |
! | GAAGGGTAACTTTTATCCTT+GGG | + | chr3.4:61576577-61576596 | None:intergenic | 35.0% |
! | TAACTTTTATCCTTGGGAGA+AGG | + | chr3.4:61576571-61576590 | None:intergenic | 35.0% |
! | TGTTTTTCTCTTTCCCAAAC+AGG | + | chr3.4:61576745-61576764 | None:intergenic | 35.0% |
!! | TGAATTTGGGGTTCCATTTT+TGG | - | chr3.4:61576459-61576478 | MS.gene38526:intron | 35.0% |
!!! | AGGACCAAAGAATTTTGGTT+TGG | + | chr3.4:61576200-61576219 | None:intergenic | 35.0% |
ACACACGAGAAAATCTTGTG+TGG | - | chr3.4:61576051-61576070 | MS.gene38526:CDS | 40.0% | |
AGAGTCAATGCCAATACCAA+CGG | - | chr3.4:61576433-61576452 | MS.gene38526:intron | 40.0% | |
AGCATGGAATTAGAAGCTAG+TGG | - | chr3.4:61577318-61577337 | MS.gene38526:intron | 40.0% | |
ATGAAGCATAGACTCCAACA+CGG | + | chr3.4:61575955-61575974 | None:intergenic | 40.0% | |
ATTCAAAGAAGAGCTGTCGA+AGG | - | chr3.4:61575218-61575237 | MS.gene38526:CDS | 40.0% | |
CGATGATCATGATCCATCAA+TGG | - | chr3.4:61577488-61577507 | MS.gene38526:CDS | 40.0% | |
CTTTGTGGTGGTTTCACAAT+TGG | - | chr3.4:61576619-61576638 | MS.gene38526:intron | 40.0% | |
GATCATGATCCATCAATGGA+AGG | - | chr3.4:61577492-61577511 | MS.gene38526:CDS | 40.0% | |
GGTGGTTTCACAATTGGAAT+GGG | - | chr3.4:61576625-61576644 | MS.gene38526:intron | 40.0% | |
GTGACAAAGTTTCTTTGTGG+TGG | - | chr3.4:61576607-61576626 | MS.gene38526:intron | 40.0% | |
GTGGTTTCACAATTGGAATG+GGG | - | chr3.4:61576626-61576645 | MS.gene38526:intron | 40.0% | |
TACATGACAAGGGTTGAAAC+TGG | + | chr3.4:61575199-61575218 | None:intergenic | 40.0% | |
TCTTGATATTCCTTCTCCCA+AGG | - | chr3.4:61576558-61576577 | MS.gene38526:intron | 40.0% | |
TGGTATGAGACGTAACTTGA+TGG | - | chr3.4:61577044-61577063 | MS.gene38526:intron | 40.0% | |
TGGTGGTTTCACAATTGGAA+TGG | - | chr3.4:61576624-61576643 | MS.gene38526:intron | 40.0% | |
TGTTGGAGTCTATGCTTCAT+AGG | - | chr3.4:61575955-61575974 | MS.gene38526:CDS | 40.0% | |
TTGTCACCATTAACACCGAA+GGG | + | chr3.4:61576594-61576613 | None:intergenic | 40.0% | |
TTTGTCACCATTAACACCGA+AGG | + | chr3.4:61576595-61576614 | None:intergenic | 40.0% | |
! | AAGAGGTGTATGTGCTTCAT+AGG | + | chr3.4:61575450-61575469 | None:intergenic | 40.0% |
! | ACAGTAGCAAGCATTTTGCA+TGG | + | chr3.4:61577435-61577454 | None:intergenic | 40.0% |
! | CGAAGGGTAACTTTTATCCT+TGG | + | chr3.4:61576578-61576597 | None:intergenic | 40.0% |
! | GTTGATGAGAAACACTTGTG+TGG | + | chr3.4:61576226-61576245 | None:intergenic | 40.0% |
! | TACCAACGGTACTGAATTTG+GGG | - | chr3.4:61576447-61576466 | MS.gene38526:intron | 40.0% |
! | TGCAACACGTCTAGTTTAAG+AGG | + | chr3.4:61575467-61575486 | None:intergenic | 40.0% |
!! | AAGTTACCCTTCGGTGTTAA+TGG | - | chr3.4:61576585-61576604 | MS.gene38526:intron | 40.0% |
!! | CAAGAAGGGATGGATTTTGA+TGG | + | chr3.4:61575075-61575094 | None:intergenic | 40.0% |
!! | CATGCTATTTGTGACGGATT+TGG | - | chr3.4:61576655-61576674 | MS.gene38526:intron | 40.0% |
!! | TATATACAAGTGTCGGACAC+CGG | + | chr3.4:61575605-61575624 | None:intergenic | 40.0% |
!! | TTGACAGAGTGGAAGCATTT+GGG | - | chr3.4:61577354-61577373 | MS.gene38526:intron | 40.0% |
!! | TTTGACAGAGTGGAAGCATT+TGG | - | chr3.4:61577353-61577372 | MS.gene38526:intron | 40.0% |
!!! | ACAACTTTTGAAGTGCTTGC+AGG | - | chr3.4:61576949-61576968 | MS.gene38526:intron | 40.0% |
!!! | CAGTAACTGTTTTGACAGAG+TGG | - | chr3.4:61577343-61577362 | MS.gene38526:intron | 40.0% |
AAAGAGAACTTGTGTGGACC+AGG | + | chr3.4:61576078-61576097 | None:intergenic | 45.0% | |
AACACTCATACGAGTCGTGT+CGG | - | chr3.4:61575624-61575643 | MS.gene38526:CDS | 45.0% | |
AACCCCAAATTCAGTACCGT+TGG | + | chr3.4:61576452-61576471 | None:intergenic | 45.0% | |
AACTTAGGCATGGCATCAAC+AGG | + | chr3.4:61577543-61577562 | None:intergenic | 45.0% | |
ACCATTTCCACAATGTCCCA+TGG | - | chr3.4:61576786-61576805 | MS.gene38526:intron | 45.0% | |
ACGTGTCGTATGAGTGTCAT+AGG | + | chr3.4:61575519-61575538 | None:intergenic | 45.0% | |
ACTTAGGCATGGCATCAACA+GGG | + | chr3.4:61577542-61577561 | None:intergenic | 45.0% | |
AGACTAGTGAGACATGCTGA+TGG | - | chr3.4:61576403-61576422 | MS.gene38526:intron | 45.0% | |
AGCCATCAGTGAAACCTGTT+TGG | - | chr3.4:61576728-61576747 | MS.gene38526:intron | 45.0% | |
CATCAATGGAAGGAGGAGTT+AGG | - | chr3.4:61577502-61577521 | MS.gene38526:CDS | 45.0% | |
CATGATCCATCAATGGAAGG+AGG | - | chr3.4:61577495-61577514 | MS.gene38526:CDS | 45.0% | |
CTAACTCCTCCTTCCATTGA+TGG | + | chr3.4:61577504-61577523 | None:intergenic | 45.0% | |
GAGAAAATCTTGTGTGGTCC+TGG | - | chr3.4:61576057-61576076 | MS.gene38526:CDS | 45.0% | |
GCAACAGATTCTCTGTCCAT+GGG | + | chr3.4:61576805-61576824 | None:intergenic | 45.0% | |
GCAGTTGTTGAACTTGCAAG+TGG | - | chr3.4:61576697-61576716 | MS.gene38526:intron | 45.0% | |
GCCATCAGTGAAACCTGTTT+GGG | - | chr3.4:61576729-61576748 | MS.gene38526:intron | 45.0% | |
GTGACCAAAGAGAACTTGTG+TGG | + | chr3.4:61576084-61576103 | None:intergenic | 45.0% | |
TCAAGAGGAGGATTTCAGCA+TGG | - | chr3.4:61577302-61577321 | MS.gene38526:intron | 45.0% | |
TCCATGGGACATTGTGGAAA+TGG | + | chr3.4:61576790-61576809 | None:intergenic | 45.0% | |
TCCCAAACAGGTTTCACTGA+TGG | + | chr3.4:61576733-61576752 | None:intergenic | 45.0% | |
TGATGCCATGCCTAAGTTCA+AGG | - | chr3.4:61577545-61577564 | MS.gene38526:CDS | 45.0% | |
TGCAACAGATTCTCTGTCCA+TGG | + | chr3.4:61576806-61576825 | None:intergenic | 45.0% | |
TGGTCCACACAAGTTCTCTT+TGG | - | chr3.4:61576077-61576096 | MS.gene38526:CDS | 45.0% | |
TTCGTCCTTGAACTTAGGCA+TGG | + | chr3.4:61577553-61577572 | None:intergenic | 45.0% | |
! | GGACCAGGACCAAAGAATTT+TGG | + | chr3.4:61576205-61576224 | None:intergenic | 45.0% |
!! | CTCCTCTTGATTTGTCTCCA+CGG | + | chr3.4:61577292-61577311 | None:intergenic | 45.0% |
!! | ATAAATTAATATTTATATAG+CGG | - | chr3.4:61575863-61575882 | MS.gene38526:CDS | 5.0% |
AAGTGCTTGCAGGTTATGCG+TGG | - | chr3.4:61576959-61576978 | MS.gene38526:intron | 50.0% | |
CGCCTGACACAATACTGACA+CGG | + | chr3.4:61575931-61575950 | None:intergenic | 50.0% | |
CGTGGAGACAAATCAAGAGG+AGG | - | chr3.4:61577290-61577309 | MS.gene38526:intron | 50.0% | |
CTCCGTGGAGACAAATCAAG+AGG | - | chr3.4:61577287-61577306 | MS.gene38526:intron | 50.0% | |
GAGAAACACTTGTGTGGACC+AGG | + | chr3.4:61576220-61576239 | None:intergenic | 50.0% | |
GTCCGTGTCAGTATTGTGTC+AGG | - | chr3.4:61575926-61575945 | MS.gene38526:CDS | 50.0% | |
TCTCTGTCCATGGGACATTG+TGG | + | chr3.4:61576796-61576815 | None:intergenic | 50.0% | |
! | GCAAGCATTTTGCATGGTGC+TGG | + | chr3.4:61577429-61577448 | None:intergenic | 50.0% |
ATTGTGTCAGGCGTCCGTGT+TGG | - | chr3.4:61575938-61575957 | MS.gene38526:CDS | 55.0% | |
TGCTTGCAGGTTATGCGTGG+AGG | - | chr3.4:61576962-61576981 | MS.gene38526:intron | 55.0% | |
TTGCAGTGTTCGACACGCGT+CGG | - | chr3.4:61575482-61575501 | MS.gene38526:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 61575015 | 61577608 | 61575015 | ID=MS.gene38526 |
chr3.4 | mRNA | 61575015 | 61577608 | 61575015 | ID=MS.gene38526.t1;Parent=MS.gene38526 |
chr3.4 | exon | 61577356 | 61577608 | 61577356 | ID=MS.gene38526.t1.exon1;Parent=MS.gene38526.t1 |
chr3.4 | CDS | 61577356 | 61577608 | 61577356 | ID=cds.MS.gene38526.t1;Parent=MS.gene38526.t1 |
chr3.4 | exon | 61575408 | 61576222 | 61575408 | ID=MS.gene38526.t1.exon2;Parent=MS.gene38526.t1 |
chr3.4 | CDS | 61575408 | 61576222 | 61575408 | ID=cds.MS.gene38526.t1;Parent=MS.gene38526.t1 |
chr3.4 | exon | 61575015 | 61575326 | 61575015 | ID=MS.gene38526.t1.exon3;Parent=MS.gene38526.t1 |
chr3.4 | CDS | 61575015 | 61575326 | 61575015 | ID=cds.MS.gene38526.t1;Parent=MS.gene38526.t1 |
Gene Sequence |
Protein sequence |