AlfalfaGEDB | MS.gene38529

M. sativa cultivar XinJiangDaYe / MS.gene38529

KEGG: K20240
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747
PFAM: PF02458.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38529.t1	XP_013460366.1	93.4	470	28	2	1	469	1	468	5.10E-253	883.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38529.t1	Q8GYW8	39.1	473	265	11	1	468	1	455	2.3e-76	287.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38529.t1	A0A072UX85	93.4	470	28	2	1	469	1	468	3.7e-253	883.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene38529	MS.gene50384	PPI
MS.gene38529	MS.gene066658	PPI
MS.gene38529	MS.gene87496	PPI
MS.gene38529	MS.gene070019	PPI
MS.gene011796	MS.gene38529	PPI
MS.gene87537	MS.gene38529	PPI
MS.gene38529	MS.gene38365	PPI
MS.gene99222	MS.gene38529	PPI
MS.gene38529	MS.gene90493	PPI
MS.gene38529	MS.gene012961	PPI
MS.gene032349	MS.gene38529	PPI
MS.gene38704	MS.gene38529	PPI
MS.gene013787	MS.gene38529	PPI
MS.gene066656	MS.gene38529	PPI
MS.gene38529	MS.gene56799	PPI
MS.gene066660	MS.gene38529	PPI
MS.gene38529	MS.gene063865	PPI
MS.gene38529	MS.gene069767	PPI
MS.gene38361	MS.gene38529	PPI
MS.gene38529	MS.gene38363	PPI
MS.gene03202	MS.gene38529	PPI
MS.gene38529	MS.gene28251	PPI
MS.gene38529	MS.gene90491	PPI
MS.gene38529	MS.gene38359	PPI
MS.gene38529	MS.gene016532	PPI
MS.gene046246	MS.gene38529	PPI
MS.gene38529	MS.gene38977	PPI
MS.gene38529	MS.gene066701	PPI
MS.gene38529	MS.gene50355	PPI
MS.gene38529	MS.gene38703	PPI
MS.gene38700	MS.gene38529	PPI
MS.gene38529	MS.gene039597	PPI
MS.gene012960	MS.gene38529	PPI
MS.gene38529	MS.gene011799	PPI
MS.gene38529	MS.gene002544	PPI
MS.gene012965	MS.gene38529	PPI
MS.gene38529	MS.gene50420	PPI
MS.gene38529	MS.gene32933	PPI
MS.gene38529	MS.gene064101	PPI
MS.gene32261	MS.gene38529	PPI
MS.gene99219	MS.gene38529	PPI
MS.gene38529	MS.gene50356	PPI
MS.gene38529	MS.gene87536	PPI
MS.gene38529	MS.gene56797	PPI
MS.gene38529	MS.gene99218	PPI
MS.gene56795	MS.gene38529	PPI
MS.gene38529	MS.gene38706	PPI
MS.gene066657	MS.gene38529	PPI
MS.gene38529	MS.gene78818	PPI
MS.gene38529	MS.gene38701	PPI
MS.gene50379	MS.gene38529	PPI
MS.gene38529	MS.gene02573	PPI
MS.gene38529	MS.gene011798	PPI
MS.gene38529	MS.gene87577	PPI
MS.gene38529	MS.gene38699	PPI
MS.gene011837	MS.gene38529	PPI
MS.gene38529	MS.gene50382	PPI
MS.gene95242	MS.gene38529	PPI
MS.gene38529	MS.gene90496	PPI
MS.gene32936	MS.gene38529	PPI
MS.gene38529	MS.gene012959	PPI
MS.gene38529	MS.gene87191	PPI
MS.gene38529	MS.gene56796	PPI
MS.gene38529	MS.gene004218	PPI
MS.gene32938	MS.gene38529	PPI
MS.gene38362	MS.gene38529	PPI
MS.gene38529	MS.gene016477	PPI
MS.gene011801	MS.gene38529	PPI
MS.gene000764	MS.gene38529	PPI
MS.gene38529	MS.gene012957	PPI
MS.gene87532	MS.gene38529	PPI
MS.gene99223	MS.gene38529	PPI
MS.gene46265	MS.gene38529	PPI
MS.gene063868	MS.gene38529	PPI
MS.gene38529	MS.gene069321	PPI
MS.gene066634	MS.gene38529	PPI
MS.gene38529	MS.gene000763	PPI
MS.gene38529	MS.gene38702	PPI
MS.gene99221	MS.gene38529	PPI
MS.gene38529	MS.gene32934	PPI
MS.gene38529	MS.gene90492	PPI
MS.gene38529	MS.gene56798	PPI
MS.gene007831	MS.gene38529	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38529.t1	MTR_3g465880	93.404	470	28	2	1	469	1	468	0.0	905
MS.gene38529.t1	MTR_3g465930	67.865	473	138	8	1	468	1	464	0.0	645
MS.gene38529.t1	MTR_3g465910	67.804	469	136	8	1	465	1	458	0.0	643
MS.gene38529.t1	MTR_3g465980	66.170	470	147	6	1	468	1	460	0.0	630
MS.gene38529.t1	MTR_3g465990	65.532	470	150	6	1	468	1	460	0.0	627
MS.gene38529.t1	MTR_3g465950	68.791	455	124	6	1	453	1	439	0.0	619
MS.gene38529.t1	MTR_3g465870	61.783	471	133	7	1	469	1	426	0.0	564
MS.gene38529.t1	MTR_6g053810	60.606	462	174	6	9	467	8	464	0.0	560
MS.gene38529.t1	MTR_4g055170	51.695	472	205	13	3	468	4	458	4.56e-153	443
MS.gene38529.t1	MTR_2g015430	30.952	462	281	12	12	463	2	435	3.51e-58	198
MS.gene38529.t1	MTR_8g096530	27.957	465	282	17	10	463	5	427	6.96e-35	135
MS.gene38529.t1	MTR_1g053315	28.131	487	277	26	7	462	13	457	7.61e-35	135
MS.gene38529.t1	MTR_1g040175	30.682	352	218	11	8	352	5	337	2.22e-34	134
MS.gene38529.t1	MTR_7g027175	30.713	407	250	16	8	409	13	392	3.29e-33	130
MS.gene38529.t1	MTR_7g114520	27.579	475	293	16	6	465	5	443	1.05e-31	127
MS.gene38529.t1	MTR_1g081660	27.193	456	290	15	19	465	25	447	2.07e-31	125
MS.gene38529.t1	MTR_7g110610	31.034	348	158	12	19	352	12	291	3.81e-31	124
MS.gene38529.t1	MTR_1g040215	27.778	468	273	19	19	465	16	439	1.22e-30	124
MS.gene38529.t1	MTR_3g071320	28.791	455	285	17	12	458	5	428	2.12e-30	122
MS.gene38529.t1	MTR_3g098980	27.373	453	277	18	18	460	20	430	8.33e-30	121
MS.gene38529.t1	MTR_7g114550	28.040	403	248	12	19	409	17	389	7.46e-28	115
MS.gene38529.t1	MTR_5g076700	25.666	413	272	13	6	409	4	390	3.48e-27	114
MS.gene38529.t1	MTR_1g040320	26.898	461	272	14	8	465	5	403	3.68e-27	113
MS.gene38529.t1	MTR_7g114470	25.527	474	304	15	6	465	5	443	6.35e-27	113
MS.gene38529.t1	MTR_3g112180	25.934	455	277	15	20	459	20	429	1.15e-26	112
MS.gene38529.t1	MTR_7g114490	26.552	467	294	15	6	459	4	434	1.13e-25	110
MS.gene38529.t1	MTR_7g114560	26.747	415	264	13	6	409	4	389	2.76e-24	105
MS.gene38529.t1	MTR_1g040315	29.487	312	190	10	19	323	16	304	2.92e-24	105
MS.gene38529.t1	MTR_3g049150	26.975	367	232	15	14	366	4	348	2.32e-22	99.8
MS.gene38529.t1	MTR_3g026950	25.070	359	241	12	20	366	10	352	2.32e-22	99.8
MS.gene38529.t1	MTR_1g040195	26.813	455	269	16	19	465	16	414	5.29e-22	98.6
MS.gene38529.t1	MTR_2g105330	25.163	461	297	20	12	460	3	427	1.55e-21	97.1
MS.gene38529.t1	MTR_8g075610	26.304	460	276	22	19	460	1	415	2.02e-21	96.7
MS.gene38529.t1	MTR_2g064495	25.163	461	297	20	12	460	3	427	3.17e-21	96.3
MS.gene38529.t1	MTR_4g007540	25.108	462	297	20	12	460	3	428	1.87e-20	94.0
MS.gene38529.t1	MTR_7g085930	24.444	450	267	20	49	460	41	455	6.28e-20	92.4
MS.gene38529.t1	MTR_7g085990	25.356	351	220	16	49	376	37	368	2.96e-17	84.3
MS.gene38529.t1	MTR_0502s0010	30.120	249	154	10	112	352	2	238	1.83e-16	79.0
MS.gene38529.t1	MTR_4g127650	27.077	325	212	12	11	326	9	317	8.35e-16	79.7
MS.gene38529.t1	MTR_7g114510	25.767	326	194	11	156	465	8	301	2.90e-15	77.0
MS.gene38529.t1	MTR_4g097090	26.394	269	172	11	69	326	64	317	4.55e-15	77.4
MS.gene38529.t1	MTR_4g013050	24.654	361	216	10	20	376	12	320	9.50e-15	76.3
MS.gene38529.t1	MTR_7g086000	27.987	318	202	13	20	324	12	315	1.99e-14	75.5
MS.gene38529.t1	MTR_4g022825	24.221	289	189	8	65	338	50	323	3.47e-12	68.6
MS.gene38529.t1	MTR_0042s0190	27.500	240	153	9	174	409	1	223	6.38e-12	66.6
MS.gene38529.t1	MTR_7g084910	25.806	341	202	14	4	322	7	318	7.02e-12	67.8
MS.gene38529.t1	MTR_5g090880	24.711	433	267	17	70	469	67	473	1.13e-11	67.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38529.t1	AT5G07080	40.512	469	242	11	6	465	8	448	9.82e-100	306
MS.gene38529.t1	AT2G23510	39.866	449	250	12	19	465	20	450	1.62e-95	296
MS.gene38529.t1	AT2G25150	39.368	475	261	12	1	468	1	455	2.68e-94	293
MS.gene38529.t1	AT3G47170	37.660	470	261	14	12	465	12	465	2.05e-81	260
MS.gene38529.t1	AT1G28680	35.449	457	271	12	12	463	4	441	4.46e-74	240
MS.gene38529.t1	AT1G28680	36.053	380	225	9	12	387	4	369	2.47e-61	205
MS.gene38529.t1	AT3G62160	28.642	405	242	12	18	413	11	377	6.36e-40	149
MS.gene38529.t1	AT5G41040	28.387	465	284	19	8	462	13	438	8.78e-40	149
MS.gene38529.t1	AT5G41040	28.387	465	284	19	8	462	29	454	1.05e-39	149
MS.gene38529.t1	AT3G03480	29.424	469	285	16	8	465	15	448	1.85e-36	140
MS.gene38529.t1	AT5G17540	26.383	470	299	14	8	465	5	439	4.10e-31	125
MS.gene38529.t1	AT2G40230	29.808	416	267	13	12	422	5	400	6.54e-30	121
MS.gene38529.t1	AT3G48720	27.434	452	285	20	15	460	12	426	1.06e-28	117
MS.gene38529.t1	AT5G63560	27.873	409	256	16	8	409	5	381	5.84e-27	112
MS.gene38529.t1	AT1G03390	26.154	455	284	21	8	440	13	437	2.22e-25	108
MS.gene38529.t1	AT1G27620	26.290	407	243	16	69	459	57	422	1.62e-22	100
MS.gene38529.t1	AT5G48930	26.835	436	263	20	10	417	1	408	3.04e-22	99.4
MS.gene38529.t1	AT4G31910	26.877	413	250	17	33	416	29	418	1.17e-19	91.7
MS.gene38529.t1	AT2G19070	26.636	428	243	20	69	462	57	447	1.80e-18	88.2
MS.gene38529.t1	AT5G57840	26.823	384	247	18	10	382	1	361	1.15e-17	85.5
MS.gene38529.t1	AT5G23940	27.547	265	167	12	71	322	66	318	3.51e-13	72.0
MS.gene38529.t1	AT1G24430	30.216	139	84	5	71	208	63	189	1.44e-11	66.6

Find 89 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCATTTCTAGCTTTAGGTTT+AGG	0.176003	3.4:+61512447	None:intergenic
CATTTCTAGCTTTAGGTTTA+GGG	0.192317	3.4:+61512448	None:intergenic
ATGCAACATGTTTGCGTCTT+TGG	0.207307	3.4:-61511055	MS.gene38529:CDS
AGGAGGAAATTGAAGCTTTA+AGG	0.213791	3.4:-61510924	MS.gene38529:CDS
GATGAAAATAGTATAGATTT+TGG	0.226632	3.4:-61511111	MS.gene38529:CDS
CTGACAGAGTGGAAGCATTT+AGG	0.236428	3.4:-61511141	MS.gene38529:CDS
CCTTTGCCTAAAGGGTATTA+TGG	0.248309	3.4:-61511360	MS.gene38529:CDS
CCTTTCTTCTCTTCATTACT+TGG	0.251953	3.4:-61511940	MS.gene38529:CDS
CATCTTTCATTTCTAGCTTT+AGG	0.271621	3.4:+61512441	None:intergenic
TTAACTCCTCCTTTCATTGA+TGG	0.282796	3.4:+61510988	None:intergenic
GATTATTATTATCCTCTTGC+AGG	0.285447	3.4:-61512233	MS.gene38529:intron
AAGTTACCCTTTGGTATTCA+TGG	0.294628	3.4:-61511856	MS.gene38529:CDS
ACAATTCATGATTCTGATTC+GGG	0.295244	3.4:-61512302	MS.gene38529:CDS
GTTGATCAAAGAGACTAAAA+AGG	0.312335	3.4:-61511262	MS.gene38529:CDS
GTTATGATCCTTTGCCTAAA+GGG	0.342005	3.4:-61511368	MS.gene38529:CDS
AACAATTCATGATTCTGATT+CGG	0.342734	3.4:-61512303	MS.gene38529:CDS
AACCTTGGCATGGCAGCAAC+AGG	0.347381	3.4:+61510949	None:intergenic
CATGTTGTTTGTGATGGATA+TGG	0.348097	3.4:-61511786	MS.gene38529:CDS
ATTTGTGGTGGTTTCACAAT+TGG	0.352743	3.4:-61511822	MS.gene38529:CDS
AGAAGCACTCTCAAAGGCTT+TGG	0.364642	3.4:-61512255	MS.gene38529:CDS
GGTGGTTTCACAATTGGAAT+GGG	0.391685	3.4:-61511816	MS.gene38529:CDS
TGGTGGTTTCACAATTGGAA+TGG	0.410300	3.4:-61511817	MS.gene38529:CDS
AGTGACTCAAAAGTTGTAAC+TGG	0.415404	3.4:+61511492	None:intergenic
GGTGTTGGTGATGCAGAATA+TGG	0.415567	3.4:-61511996	MS.gene38529:CDS
TGCTGCCATGCCAAGGTTCA+AGG	0.423876	3.4:-61510944	MS.gene38529:CDS
TCAAGATAAAAGTTACCCTT+TGG	0.431544	3.4:-61511865	MS.gene38529:CDS
TCAGAATCATGAATTGTTGA+TGG	0.437948	3.4:+61512308	None:intergenic
TCAATTTCCTCCTTGAACCT+TGG	0.439469	3.4:+61510934	None:intergenic
ACTTAAGATGAGTTTGATGA+AGG	0.440968	3.4:-61511535	MS.gene38529:CDS
TTAGCATATGCTTCTAAGAA+TGG	0.443157	3.4:+61511969	None:intergenic
GCAATTGTTGAACTTGCAAA+AGG	0.451246	3.4:-61511744	MS.gene38529:CDS
GGTTATGATCCTTTGCCTAA+AGG	0.451656	3.4:-61511369	MS.gene38529:CDS
TGTTCACATGTTGTTTGTGA+TGG	0.460683	3.4:-61511792	MS.gene38529:CDS
GGAAGACTTAGAGTCGAGTT+TGG	0.466467	3.4:-61512017	MS.gene38529:CDS
GTCAAGCTGTTCATGTATAC+CGG	0.467168	3.4:-61512331	MS.gene38529:CDS
TCATCATCATCAACTTTACT+AGG	0.476073	3.4:+61511012	None:intergenic
GTATTACCATAATACCCTTT+AGG	0.476850	3.4:+61511354	None:intergenic
TCCCTGTTGCTGCCATGCCA+AGG	0.485568	3.4:-61510951	MS.gene38529:CDS
GGTTGAAGTAATGGTGGAAG+TGG	0.490092	3.4:+61511648	None:intergenic
CCAAGTAATGAAGAGAAGAA+AGG	0.491172	3.4:+61511940	None:intergenic
TCTTGCTTATGCTCCGTCTC+CGG	0.493846	3.4:+61511198	None:intergenic
AAAAGCAATGTTGAATATGT+TGG	0.498010	3.4:-61511415	MS.gene38529:CDS
AAGATGAGTTTGATGAAGGA+AGG	0.508475	3.4:-61511531	MS.gene38529:CDS
CAAGTAATGAAGAGAAGAAA+GGG	0.508480	3.4:+61511941	None:intergenic
CTTAGAGTCGAGTTTGGTGT+TGG	0.517083	3.4:-61512011	MS.gene38529:CDS
AATACAAGAAGGAATGGACT+TGG	0.517455	3.4:+61512400	None:intergenic
AGAAAGAATACAAGAAGGAA+TGG	0.519099	3.4:+61512394	None:intergenic
GCTTTACAACTTAGCACCAA+TGG	0.529141	3.4:-61511438	MS.gene38529:CDS
TGGGAAAGAGAGAGACTAGT+TGG	0.531305	3.4:-61511693	MS.gene38529:CDS
GGTATTAGACGCAGCATGAA+AGG	0.539149	3.4:-61511390	MS.gene38529:CDS
GGTAGACTAGTGAGACATGC+TGG	0.539944	3.4:-61512044	MS.gene38529:CDS
CACTTGGTGCTTATGTGTGG+AGG	0.540041	3.4:-61511473	MS.gene38529:CDS
TATGGTAATACTACTGTGGA+TGG	0.540481	3.4:-61511342	MS.gene38529:CDS
ATTTCTAGCTTTAGGTTTAG+GGG	0.543168	3.4:+61512449	None:intergenic
CCATAATACCCTTTAGGCAA+AGG	0.543629	3.4:+61511360	None:intergenic
TTCCTCCTTGAACCTTGGCA+TGG	0.549243	3.4:+61510939	None:intergenic
GACAGAGAAAGAATACAAGA+AGG	0.550104	3.4:+61512389	None:intergenic
CTCGATCGACACTCCGGAGA+CGG	0.550133	3.4:-61511211	MS.gene38529:CDS
CACAGATATTGCAAAAGACT+TGG	0.550145	3.4:-61511907	MS.gene38529:CDS
AGTCACTTGGTGCTTATGTG+TGG	0.550371	3.4:-61511476	MS.gene38529:CDS
TTGTCACCATGAATACCAAA+GGG	0.551952	3.4:+61511850	None:intergenic
AATCATGAATTGTTGATGGC+CGG	0.563884	3.4:+61512312	None:intergenic
TTTGTCACCATGAATACCAA+AGG	0.565547	3.4:+61511849	None:intergenic
CAAGAAGGAATGGACTTGGA+TGG	0.571444	3.4:+61512404	None:intergenic
TTTACAAGTATACCTGCAAG+AGG	0.571753	3.4:+61512221	None:intergenic
GTGACAAAATTTATTTGTGG+TGG	0.581717	3.4:-61511834	MS.gene38529:CDS
GCCTTCTGTGATACCTGTGT+GGG	0.584868	3.4:-61511712	MS.gene38529:CDS
GCAAACATGTTGCATGGTGC+TGG	0.589020	3.4:+61511063	None:intergenic
GTGGTTTCACAATTGGAATG+GGG	0.594042	3.4:-61511815	MS.gene38529:CDS
AACATGTTTGCGTCTTTGGA+AGG	0.596806	3.4:-61511051	MS.gene38529:CDS
ATTCAAAGAAGCACTCTCAA+AGG	0.600716	3.4:-61512261	MS.gene38529:CDS
CTAGTGAGACATGCTGGAGA+CGG	0.602816	3.4:-61512038	MS.gene38529:CDS
ATGGTGACAAAATTTATTTG+TGG	0.603646	3.4:-61511837	MS.gene38529:CDS
GCAATGTTGAATATGTTGGT+TGG	0.607643	3.4:-61511411	MS.gene38529:CDS
GATGATGATCCATCAATGAA+AGG	0.624021	3.4:-61510997	MS.gene38529:CDS
TCCCACACAGGTATCACAGA+AGG	0.627307	3.4:+61511711	None:intergenic
GCTTCTTTGAATACATGACA+AGG	0.632259	3.4:+61512272	None:intergenic
AAAGACGCAAACATGTTGCA+TGG	0.635230	3.4:+61511057	None:intergenic
CGGTAACGATTCTGACAGAG+TGG	0.653117	3.4:-61511152	MS.gene38529:CDS
ACCTTGGCATGGCAGCAACA+GGG	0.654343	3.4:+61510950	None:intergenic
GATGATCCATCAATGAAAGG+AGG	0.655138	3.4:-61510994	MS.gene38529:CDS
AGTCTCTCTCTTTCCCACAC+AGG	0.657387	3.4:+61511699	None:intergenic
ACTTGGTGCTTATGTGTGGA+GGG	0.659872	3.4:-61511472	MS.gene38529:CDS
TAGCATGGACGGTAGCGGTG+CGG	0.664954	3.4:-61511172	MS.gene38529:CDS
AGCCTTCTGTGATACCTGTG+TGG	0.665598	3.4:-61511713	MS.gene38529:CDS
GTATTATGGTAATACTACTG+TGG	0.668892	3.4:-61511346	MS.gene38529:CDS
CTTCTTTGAATACATGACAA+GGG	0.672661	3.4:+61512273	None:intergenic
ATACATGAACAGCTTGACAA+AGG	0.673504	3.4:+61512336	None:intergenic
TGCCATGCCAAGGTTCAAGG+AGG	0.734826	3.4:-61510941	MS.gene38529:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATTAAAATCTATTGTTTTA+AGG	-	chr3.4:61511799-61511818	MS.gene38529:CDS	10.0%
!!	AGCATAAATAAATGAATAAA+CGG	+	chr3.4:61511256-61511275	None:intergenic	15.0%
!!!	TAGATTTTAATAACTGTTTT+TGG	+	chr3.4:61511791-61511810	None:intergenic	15.0%
!!!	AAAATAGTATAGATTTTGGA+GGG	-	chr3.4:61512272-61512291	MS.gene38529:CDS	20.0%
!!!	GATGAAAATAGTATAGATTT+TGG	-	chr3.4:61512268-61512287	MS.gene38529:CDS	20.0%
!	AAAAGCAATGTTGAATATGT+TGG	-	chr3.4:61511964-61511983	MS.gene38529:CDS	25.0%
!	AACAATTCATGATTCTGATT+CGG	-	chr3.4:61511076-61511095	MS.gene38529:CDS	25.0%
!	ATAAATGAATAAACGGTGTT+TGG	+	chr3.4:61511249-61511268	None:intergenic	25.0%
!	ATGGTGACAAAATTTATTTG+TGG	-	chr3.4:61511542-61511561	MS.gene38529:CDS	25.0%
!!	GAAAATAGTATAGATTTTGG+AGG	-	chr3.4:61512271-61512290	MS.gene38529:CDS	25.0%
	ACAATTCATGATTCTGATTC+GGG	-	chr3.4:61511077-61511096	MS.gene38529:CDS	30.0%
	ACTAAAGGTAAAAATGCAAC+AGG	+	chr3.4:61511764-61511783	None:intergenic	30.0%
	ACTTAAGATGAGTTTGATGA+AGG	-	chr3.4:61511844-61511863	MS.gene38529:CDS	30.0%
	AGAAAGAATACAAGAAGGAA+TGG	+	chr3.4:61510988-61511007	None:intergenic	30.0%
	CAAGTAATGAAGAGAAGAAA+GGG	+	chr3.4:61511441-61511460	None:intergenic	30.0%
	CTTCTTTGAATACATGACAA+GGG	+	chr3.4:61511109-61511128	None:intergenic	30.0%
	GATTATTATTATCCTCTTGC+AGG	-	chr3.4:61511146-61511165	MS.gene38529:CDS	30.0%
	GTATTACCATAATACCCTTT+AGG	+	chr3.4:61512028-61512047	None:intergenic	30.0%
	GTATTATGGTAATACTACTG+TGG	-	chr3.4:61512033-61512052	MS.gene38529:CDS	30.0%
	GTGACAAAATTTATTTGTGG+TGG	-	chr3.4:61511545-61511564	MS.gene38529:CDS	30.0%
	GTTGATCAAAGAGACTAAAA+AGG	-	chr3.4:61512117-61512136	MS.gene38529:intron	30.0%
	TCAAGATAAAAGTTACCCTT+TGG	-	chr3.4:61511514-61511533	MS.gene38529:CDS	30.0%
	TCAGAATCATGAATTGTTGA+TGG	+	chr3.4:61511074-61511093	None:intergenic	30.0%
	TCATCATCATCAACTTTACT+AGG	+	chr3.4:61512370-61512389	None:intergenic	30.0%
!	AAAAATGCAACAGGTTCTTT+TGG	+	chr3.4:61511755-61511774	None:intergenic	30.0%
!	AAAGGGTAACTTTTATCTTG+AGG	+	chr3.4:61511515-61511534	None:intergenic	30.0%
!	TAACTTTTATCTTGAGGAGA+AGG	+	chr3.4:61511509-61511528	None:intergenic	30.0%
!	TTAGCATATGCTTCTAAGAA+TGG	+	chr3.4:61511413-61511432	None:intergenic	30.0%
!!	ATTCAACATTGCTTTTCCAT+TGG	+	chr3.4:61511960-61511979	None:intergenic	30.0%
!!	ATTTCTAGCTTTAGGTTTAG+GGG	+	chr3.4:61510933-61510952	None:intergenic	30.0%
!!	CATCTTTCATTTCTAGCTTT+AGG	+	chr3.4:61510941-61510960	None:intergenic	30.0%
!!	CATTTCTAGCTTTAGGTTTA+GGG	+	chr3.4:61510934-61510953	None:intergenic	30.0%
!!	TCATTTCTAGCTTTAGGTTT+AGG	+	chr3.4:61510935-61510954	None:intergenic	30.0%
!!!	ACTGTTTTTGGTTGAACTAA+AGG	+	chr3.4:61511779-61511798	None:intergenic	30.0%
	AAGATGAGTTTGATGAAGGA+AGG	-	chr3.4:61511848-61511867	MS.gene38529:CDS	35.0%
	AAGTTACCCTTTGGTATTCA+TGG	-	chr3.4:61511523-61511542	MS.gene38529:CDS	35.0%
	AGGAGGAAATTGAAGCTTTA+AGG	-	chr3.4:61512455-61512474	MS.gene38529:CDS	35.0%
	AGTGACTCAAAAGTTGTAAC+TGG	+	chr3.4:61511890-61511909	None:intergenic	35.0%
	ATACATGAACAGCTTGACAA+AGG	+	chr3.4:61511046-61511065	None:intergenic	35.0%
	ATTTGTGGTGGTTTCACAAT+TGG	-	chr3.4:61511557-61511576	MS.gene38529:CDS	35.0%
	CACAGATATTGCAAAAGACT+TGG	-	chr3.4:61511472-61511491	MS.gene38529:CDS	35.0%
	CCAAGTAATGAAGAGAAGAA+AGG	+	chr3.4:61511442-61511461	None:intergenic	35.0%
	CCTTTCTTCTCTTCATTACT+TGG	-	chr3.4:61511439-61511458	MS.gene38529:CDS	35.0%
	GACAGAGAAAGAATACAAGA+AGG	+	chr3.4:61510993-61511012	None:intergenic	35.0%
	GATGATGATCCATCAATGAA+AGG	-	chr3.4:61512382-61512401	MS.gene38529:CDS	35.0%
	GCAATGTTGAATATGTTGGT+TGG	-	chr3.4:61511968-61511987	MS.gene38529:CDS	35.0%
	GCAATTGTTGAACTTGCAAA+AGG	-	chr3.4:61511635-61511654	MS.gene38529:CDS	35.0%
	GCTTCTTTGAATACATGACA+AGG	+	chr3.4:61511110-61511129	None:intergenic	35.0%
	GTTATGATCCTTTGCCTAAA+GGG	-	chr3.4:61512011-61512030	MS.gene38529:CDS	35.0%
	TATGGTAATACTACTGTGGA+TGG	-	chr3.4:61512037-61512056	MS.gene38529:CDS	35.0%
	TTAACTCCTCCTTTCATTGA+TGG	+	chr3.4:61512394-61512413	None:intergenic	35.0%
	TTGTCACCATGAATACCAAA+GGG	+	chr3.4:61511532-61511551	None:intergenic	35.0%
	TTTACAAGTATACCTGCAAG+AGG	+	chr3.4:61511161-61511180	None:intergenic	35.0%
	TTTGTCACCATGAATACCAA+AGG	+	chr3.4:61511533-61511552	None:intergenic	35.0%
!	AATACAAGAAGGAATGGACT+TGG	+	chr3.4:61510982-61511001	None:intergenic	35.0%
!	TGTTCACATGTTGTTTGTGA+TGG	-	chr3.4:61511587-61511606	MS.gene38529:CDS	35.0%
!!	AAGCAAGATTTTAGCATGGA+CGG	-	chr3.4:61512196-61512215	MS.gene38529:intron	35.0%
!!	AATCATGAATTGTTGATGGC+CGG	+	chr3.4:61511070-61511089	None:intergenic	35.0%
!!	ATTCAAAGAAGCACTCTCAA+AGG	-	chr3.4:61511118-61511137	MS.gene38529:CDS	35.0%
!!	CATGTTGTTTGTGATGGATA+TGG	-	chr3.4:61511593-61511612	MS.gene38529:CDS	35.0%
!!	GCATAAGCAAGATTTTAGCA+TGG	-	chr3.4:61512192-61512211	MS.gene38529:intron	35.0%
!!	GGTTCTTTTGGTTGAAGTAA+TGG	+	chr3.4:61511743-61511762	None:intergenic	35.0%
!!	GTTACAACTTTTGAGTCACT+TGG	-	chr3.4:61511890-61511909	MS.gene38529:CDS	35.0%
!!	TCTTTTGGTTGAAGTAATGG+TGG	+	chr3.4:61511740-61511759	None:intergenic	35.0%
!!!	TTGTTTTAAGGTTGAGAGTG+AGG	-	chr3.4:61511811-61511830	MS.gene38529:CDS	35.0%
	AAAGACGCAAACATGTTGCA+TGG	+	chr3.4:61512325-61512344	None:intergenic	40.0%
	AACATGTTTGCGTCTTTGGA+AGG	-	chr3.4:61512328-61512347	MS.gene38529:CDS	40.0%
	ATGCAACATGTTTGCGTCTT+TGG	-	chr3.4:61512324-61512343	MS.gene38529:CDS	40.0%
	CCATAATACCCTTTAGGCAA+AGG	+	chr3.4:61512022-61512041	None:intergenic	40.0%
	GATGATCCATCAATGAAAGG+AGG	-	chr3.4:61512385-61512404	MS.gene38529:CDS	40.0%
	GCTTTACAACTTAGCACCAA+TGG	-	chr3.4:61511941-61511960	MS.gene38529:CDS	40.0%
	GGTGGTTTCACAATTGGAAT+GGG	-	chr3.4:61511563-61511582	MS.gene38529:CDS	40.0%
	GGTTATGATCCTTTGCCTAA+AGG	-	chr3.4:61512010-61512029	MS.gene38529:CDS	40.0%
	GTCAAGCTGTTCATGTATAC+CGG	-	chr3.4:61511048-61511067	MS.gene38529:CDS	40.0%
	GTGGTTTCACAATTGGAATG+GGG	-	chr3.4:61511564-61511583	MS.gene38529:CDS	40.0%
	TCAATTTCCTCCTTGAACCT+TGG	+	chr3.4:61512448-61512467	None:intergenic	40.0%
	TGGTGGTTTCACAATTGGAA+TGG	-	chr3.4:61511562-61511581	MS.gene38529:CDS	40.0%
!	CGAGTTTTTGACATAACCAG+TGG	+	chr3.4:61512152-61512171	None:intergenic	40.0%
!	GGATTGAGAAGTTGGTTTAG+TGG	+	chr3.4:61511307-61511326	None:intergenic	40.0%
!	GTTTTTGACATAACCAGTGG+TGG	+	chr3.4:61512149-61512168	None:intergenic	40.0%
!!	CCTTTGCCTAAAGGGTATTA+TGG	-	chr3.4:61512019-61512038	MS.gene38529:CDS	40.0%
	AAAAAGGTTGCTTCCACCAC+TGG	-	chr3.4:61512133-61512152	MS.gene38529:intron	45.0%
	AACTTCTCAATCCGTTTCCC+AGG	-	chr3.4:61511314-61511333	MS.gene38529:CDS	45.0%
	CAAAAACTCGATCGACACTC+CGG	-	chr3.4:61512162-61512181	MS.gene38529:intron	45.0%
	GGAAGACTTAGAGTCGAGTT+TGG	-	chr3.4:61511362-61511381	MS.gene38529:CDS	45.0%
	GGTATTAGACGCAGCATGAA+AGG	-	chr3.4:61511989-61512008	MS.gene38529:CDS	45.0%
	TGGGAAAGAGAGAGACTAGT+TGG	-	chr3.4:61511686-61511705	MS.gene38529:CDS	45.0%
!	CAAGAAGGAATGGACTTGGA+TGG	+	chr3.4:61510978-61510997	None:intergenic	45.0%
!	CATGTCTCACTAGTCTACCT+GGG	+	chr3.4:61511334-61511353	None:intergenic	45.0%
!	GGTTGAAGTAATGGTGGAAG+TGG	+	chr3.4:61511734-61511753	None:intergenic	45.0%
!	TCACTAGTCTACCTGGGAAA+CGG	+	chr3.4:61511328-61511347	None:intergenic	45.0%
!!	ACTTGGTGCTTATGTGTGGA+GGG	-	chr3.4:61511907-61511926	MS.gene38529:CDS	45.0%
!!	AGAAGCACTCTCAAAGGCTT+TGG	-	chr3.4:61511124-61511143	MS.gene38529:CDS	45.0%
!!	AGTCACTTGGTGCTTATGTG+TGG	-	chr3.4:61511903-61511922	MS.gene38529:CDS	45.0%
!!	CTGACAGAGTGGAAGCATTT+AGG	-	chr3.4:61512238-61512257	MS.gene38529:CDS	45.0%
!!	CTTAGAGTCGAGTTTGGTGT+TGG	-	chr3.4:61511368-61511387	MS.gene38529:CDS	45.0%
!!	GATTTTAGCATGGACGGTAG+CGG	-	chr3.4:61512202-61512221	MS.gene38529:intron	45.0%
!!	GGTGTTGGTGATGCAGAATA+TGG	-	chr3.4:61511383-61511402	MS.gene38529:CDS	45.0%
!!	TGGGAAACGGATTGAGAAGT+TGG	+	chr3.4:61511315-61511334	None:intergenic	45.0%
	AGCCTTCTGTGATACCTGTG+TGG	-	chr3.4:61511666-61511685	MS.gene38529:CDS	50.0%
	AGTCTCTCTCTTTCCCACAC+AGG	+	chr3.4:61511683-61511702	None:intergenic	50.0%
	CGGTAACGATTCTGACAGAG+TGG	-	chr3.4:61512227-61512246	MS.gene38529:intron	50.0%
	CTAGTGAGACATGCTGGAGA+CGG	-	chr3.4:61511341-61511360	MS.gene38529:CDS	50.0%
	GCAAACATGTTGCATGGTGC+TGG	+	chr3.4:61512319-61512338	None:intergenic	50.0%
	GCCTTCTGTGATACCTGTGT+GGG	-	chr3.4:61511667-61511686	MS.gene38529:CDS	50.0%
	GGTAGACTAGTGAGACATGC+TGG	-	chr3.4:61511335-61511354	MS.gene38529:CDS	50.0%
	TCCCACACAGGTATCACAGA+AGG	+	chr3.4:61511671-61511690	None:intergenic	50.0%
	TCTTGCTTATGCTCCGTCTC+CGG	+	chr3.4:61512184-61512203	None:intergenic	50.0%
	TTCCTCCTTGAACCTTGGCA+TGG	+	chr3.4:61512443-61512462	None:intergenic	50.0%
!	GCATGTCTCACTAGTCTACC+TGG	+	chr3.4:61511335-61511354	None:intergenic	50.0%
!!	CACTTGGTGCTTATGTGTGG+AGG	-	chr3.4:61511906-61511925	MS.gene38529:CDS	50.0%
	AACCTTGGCATGGCAGCAAC+AGG	+	chr3.4:61512433-61512452	None:intergenic	55.0%
	ACCTTGGCATGGCAGCAACA+GGG	+	chr3.4:61512432-61512451	None:intergenic	55.0%
	TGCCATGCCAAGGTTCAAGG+AGG	-	chr3.4:61512438-61512457	MS.gene38529:CDS	55.0%
	TGCTGCCATGCCAAGGTTCA+AGG	-	chr3.4:61512435-61512454	MS.gene38529:CDS	55.0%
	CTCGATCGACACTCCGGAGA+CGG	-	chr3.4:61512168-61512187	MS.gene38529:intron	60.0%
	TCCCTGTTGCTGCCATGCCA+AGG	-	chr3.4:61512428-61512447	MS.gene38529:CDS	60.0%
!	TAGCATGGACGGTAGCGGTG+CGG	-	chr3.4:61512207-61512226	MS.gene38529:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	61510912	61512489	61510912	ID=MS.gene38529
chr3.4	mRNA	61510912	61512489	61510912	ID=MS.gene38529.t1;Parent=MS.gene38529
chr3.4	exon	61512234	61512489	61512234	ID=MS.gene38529.t1.exon1;Parent=MS.gene38529.t1
chr3.4	CDS	61512234	61512489	61512234	ID=cds.MS.gene38529.t1;Parent=MS.gene38529.t1
chr3.4	exon	61510912	61512065	61510912	ID=MS.gene38529.t1.exon2;Parent=MS.gene38529.t1
chr3.4	CDS	61510912	61512065	61510912	ID=cds.MS.gene38529.t1;Parent=MS.gene38529.t1

Gene Sequence

>MS.gene38529

ATGGCGTATCAGAAAGCACCCCTAAACCTAAAGCTAGAAATGAAAGATGTTGTGCTTGTAAAACCATCCAAGTCCATTCCTTCTTGTATTCTTTCTCTGTCTACACTTGACAATAAAGACAACAATAATAACCTTTGTCAAGCTGTTCATGTATACCGGCCATCAACAATTCATGATTCTGATTCGGGTTTCGACCCTTGTCATGTATTCAAAGAAGCACTCTCAAAGGCTTTGGATTATTATTATCCTCTTGCAGGTATACTTGTAAAAAAGAACTTTTATAATGATAAATGTTACTAATGAATTGTTATAGCATAAATTTATGTGTGTGTATCCAAACACCGTTTATTCATTTATTTATGCTCGTGATCATAGAAGAATGTCTCGTTAAACCACTAAACCAACTTCTCAATCCGTTTCCCAGGTAGACTAGTGAGACATGCTGGAGACGGAAGACTTAGAGTCGAGTTTGGTGTTGGTGATGCAGAATATGGTGTTCCATTCTTAGAAGCATATGCTAATTGCACCCTTTCTTCTCTTCATTACTTGGACAATACTGACACAGATATTGCAAAAGACTTGGTGCTTGATGTTCCTTCTCCTCAAGATAAAAGTTACCCTTTGGTATTCATGGTGACAAAATTTATTTGTGGTGGTTTCACAATTGGAATGGGGTGTTCACATGTTGTTTGTGATGGATATGGTTCAATTCAAGTCTTCAAAGCAATTGTTGAACTTGCAAAAGGAAGAAGTGAGCCTTCTGTGATACCTGTGTGGGAAAGAGAGAGACTAGTTGGTTCTTCAACAAGTACTAAACAACCACTTCCACCATTACTTCAACCAAAAGAACCTGTTGCATTTTTACCTTTAGTTCAACCAAAAACAGTTATTAAAATCTATTGTTTTAAGGTTGAGAGTGAGGTGATAAAAAGACTTAAGATGAGTTTGATGAAGGAAGGTGATAGTGAAAGTGAACCAGTTACAACTTTTGAGTCACTTGGTGCTTATGTGTGGAGGGCAAGAGCAAGAGCTTTACAACTTAGCACCAATGGAAAAGCAATGTTGAATATGTTGGTTGGTATTAGACGCAGCATGAAAGGTTATGATCCTTTGCCTAAAGGGTATTATGGTAATACTACTGTGGATGGAAAAGTTGTTTTAAAAGTGAGTAAGCTCAATGAAATGTCACTCTATGAAATTGTTAAGTTGATCAAAGAGACTAAAAAGGTTGCTTCCACCACTGGTTATGTCAAAAACTCGATCGACACTCCGGAGACGGAGCATAAGCAAGATTTTAGCATGGACGGTAGCGGTGCGGTAACGATTCTGACAGAGTGGAAGCATTTAGGTTTTCTTGATGAAAATAGTATAGATTTTGGAGGGTATGAATCAGTGAATTTTGTACCAGCACCATGCAACATGTTTGCGTCTTTGGAAGGTTGCATTTTCGCATCTCCTAGTAAAGTTGATGATGATGATCCATCAATGAAAGGAGGAGTTAAGATTTTCACATCACTCCCTGTTGCTGCCATGCCAAGGTTCAAGGAGGAAATTGAAGCTTTAAGGTTACTTAATTGA

Protein sequence

>MS.gene38529.t1

MAYQKAPLNLKLEMKDVVLVKPSKSIPSCILSLSTLDNKDNNNNLCQAVHVYRPSTIHDSDSGFDPCHVFKEALSKALDYYYPLAGRLVRHAGDGRLRVEFGVGDAEYGVPFLEAYANCTLSSLHYLDNTDTDIAKDLVLDVPSPQDKSYPLVFMVTKFICGGFTIGMGCSHVVCDGYGSIQVFKAIVELAKGRSEPSVIPVWERERLVGSSTSTKQPLPPLLQPKEPVAFLPLVQPKTVIKIYCFKVESEVIKRLKMSLMKEGDSESEPVTTFESLGAYVWRARARALQLSTNGKAMLNMLVGIRRSMKGYDPLPKGYYGNTTVDGKVVLKVSKLNEMSLYEIVKLIKETKKVASTTGYVKNSIDTPETEHKQDFSMDGSGAVTILTEWKHLGFLDENSIDFGGYESVNFVPAPCNMFASLEGCIFASPSKVDDDDPSMKGGVKIFTSLPVAAMPRFKEEIEALRLLN