AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41585

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41585.t1 MTR_3g465880 92.766 470 31 2 1 469 1 468 0.0 904
MS.gene41585.t1 MTR_3g465930 67.019 473 142 8 1 468 1 464 0.0 643
MS.gene41585.t1 MTR_3g465910 66.738 469 141 8 1 465 1 458 0.0 639
MS.gene41585.t1 MTR_3g465980 65.532 470 150 6 1 468 1 460 0.0 630
MS.gene41585.t1 MTR_3g465990 65.319 470 151 6 1 468 1 460 0.0 628
MS.gene41585.t1 MTR_3g465950 67.473 455 130 6 1 453 1 439 0.0 612
MS.gene41585.t1 MTR_3g465870 61.359 471 135 7 1 469 1 426 0.0 563
MS.gene41585.t1 MTR_6g053810 60.173 462 176 6 9 467 8 464 0.0 558
MS.gene41585.t1 MTR_4g055170 51.483 472 206 12 3 468 4 458 3.37e-153 444
MS.gene41585.t1 MTR_2g015430 30.065 459 291 11 10 463 2 435 9.36e-59 200
MS.gene41585.t1 MTR_8g096530 28.908 467 277 18 8 463 5 427 8.04e-36 138
MS.gene41585.t1 MTR_1g081660 27.632 456 289 15 21 465 22 447 1.98e-33 131
MS.gene41585.t1 MTR_1g040175 30.994 342 208 11 19 352 16 337 4.57e-33 130
MS.gene41585.t1 MTR_7g027175 30.713 407 250 15 8 409 13 392 7.24e-33 129
MS.gene41585.t1 MTR_1g053315 28.692 474 291 25 7 462 13 457 8.10e-33 130
MS.gene41585.t1 MTR_7g114520 27.789 475 292 17 6 465 5 443 7.34e-32 127
MS.gene41585.t1 MTR_3g098980 27.815 453 275 18 18 460 20 430 4.16e-31 124
MS.gene41585.t1 MTR_1g040215 26.613 496 265 17 8 465 5 439 8.37e-31 124
MS.gene41585.t1 MTR_3g071320 28.035 453 291 13 12 458 5 428 2.57e-29 119
MS.gene41585.t1 MTR_7g110610 30.029 343 168 11 19 352 12 291 4.50e-29 118
MS.gene41585.t1 MTR_5g076700 26.420 405 253 12 19 409 17 390 1.50e-27 115
MS.gene41585.t1 MTR_7g114550 27.114 402 253 13 19 409 17 389 1.52e-27 115
MS.gene41585.t1 MTR_7g114470 25.581 473 305 14 6 465 5 443 5.20e-27 113
MS.gene41585.t1 MTR_1g040320 26.464 461 274 14 8 465 5 403 2.39e-26 111
MS.gene41585.t1 MTR_7g114560 26.434 401 257 13 19 409 17 389 8.83e-25 107
MS.gene41585.t1 MTR_7g114490 26.442 416 264 12 6 409 4 389 1.02e-24 107
MS.gene41585.t1 MTR_1g040315 30.159 315 184 11 19 323 16 304 1.56e-24 105
MS.gene41585.t1 MTR_3g112180 25.000 460 281 16 17 459 17 429 1.58e-24 106
MS.gene41585.t1 MTR_3g026950 25.070 359 241 12 20 366 10 352 3.80e-23 102
MS.gene41585.t1 MTR_1g040195 27.692 455 265 16 19 465 16 414 4.33e-23 101
MS.gene41585.t1 MTR_3g049150 26.829 369 230 15 14 366 4 348 5.90e-23 101
MS.gene41585.t1 MTR_8g075610 27.293 458 272 21 20 460 2 415 1.06e-22 100
MS.gene41585.t1 MTR_2g064495 25.870 460 295 19 12 460 3 427 3.82e-21 95.9
MS.gene41585.t1 MTR_2g105330 25.652 460 296 19 12 460 3 427 4.52e-21 95.5
MS.gene41585.t1 MTR_4g007540 25.813 461 295 19 12 460 3 428 1.98e-20 94.0
MS.gene41585.t1 MTR_7g085930 24.775 444 273 19 49 460 41 455 1.56e-19 91.3
MS.gene41585.t1 MTR_7g085990 26.136 352 216 17 49 376 37 368 1.01e-16 82.8
MS.gene41585.t1 MTR_0502s0010 28.854 253 152 8 112 352 2 238 3.27e-16 78.6
MS.gene41585.t1 MTR_4g127650 26.648 349 231 12 11 350 9 341 3.34e-16 81.3
MS.gene41585.t1 MTR_7g086000 27.027 370 230 15 20 366 12 364 6.01e-16 80.5
MS.gene41585.t1 MTR_4g013050 24.167 360 219 9 20 376 12 320 1.59e-15 78.6
MS.gene41585.t1 MTR_7g084940 24.570 407 258 16 5 395 9 382 2.87e-15 78.2
MS.gene41585.t1 MTR_4g022825 25.347 288 187 7 65 338 50 323 3.13e-13 71.6
MS.gene41585.t1 MTR_5g090830 25.231 325 202 11 70 373 66 370 7.59e-13 70.9
MS.gene41585.t1 MTR_0042s0190 25.726 241 156 7 174 409 1 223 1.04e-12 68.9
MS.gene41585.t1 MTR_3g101900 25.614 285 181 7 70 341 66 332 5.97e-12 67.8
MS.gene41585.t1 MTR_3g450690 25.625 320 203 12 70 371 72 374 4.08e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41585.t1 AT5G07080 40.938 469 240 11 6 465 8 448 3.42e-100 308
MS.gene41585.t1 AT2G23510 39.644 449 251 11 19 465 20 450 1.92e-95 295
MS.gene41585.t1 AT2G25150 38.266 473 269 11 1 468 1 455 3.12e-91 285
MS.gene41585.t1 AT3G47170 37.288 472 260 13 12 465 12 465 4.43e-80 256
MS.gene41585.t1 AT1G28680 35.230 457 272 12 12 463 4 441 1.04e-72 236
MS.gene41585.t1 AT1G28680 35.789 380 226 9 12 387 4 369 4.10e-60 202
MS.gene41585.t1 AT5G41040 28.817 465 282 18 8 462 13 438 8.69e-40 149
MS.gene41585.t1 AT5G41040 28.879 464 281 18 8 461 29 453 9.50e-40 149
MS.gene41585.t1 AT3G62160 28.148 405 244 12 18 413 11 377 4.31e-39 147
MS.gene41585.t1 AT3G03480 28.355 462 299 12 8 465 15 448 9.95e-37 140
MS.gene41585.t1 AT5G17540 26.509 464 306 12 8 465 5 439 6.94e-31 124
MS.gene41585.t1 AT3G48720 27.679 448 281 19 19 460 16 426 9.56e-30 120
MS.gene41585.t1 AT2G40230 29.567 416 268 13 12 422 5 400 5.34e-29 119
MS.gene41585.t1 AT5G63560 27.681 401 247 16 18 409 15 381 1.56e-25 108
MS.gene41585.t1 AT5G48930 27.294 436 261 20 10 417 1 408 2.87e-23 102
MS.gene41585.t1 AT1G03390 27.002 437 270 23 22 440 32 437 3.77e-23 102
MS.gene41585.t1 AT1G27620 26.044 407 244 16 69 459 57 422 3.20e-22 99.4
MS.gene41585.t1 AT2G19070 26.512 430 241 20 69 462 57 447 5.93e-19 89.4
MS.gene41585.t1 AT4G31910 27.007 411 252 17 33 416 29 418 6.45e-19 89.4
MS.gene41585.t1 AT1G65450 28.087 413 256 16 2 397 4 392 3.21e-18 87.4
MS.gene41585.t1 AT5G57840 27.083 384 246 17 10 382 1 361 2.28e-17 84.7
MS.gene41585.t1 AT5G23940 27.170 265 170 10 70 322 65 318 1.35e-12 70.1
MS.gene41585.t1 AT1G24430 30.216 139 84 5 71 208 63 189 1.87e-11 66.2

Find 96 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACAGAGTGGAAGCATTT+AGG 0.153053 3.1:-50202208 MS.gene41585:CDS
TCATTTCTAGCTTTAGGTTT+AGG 0.176003 3.1:+50203513 None:intergenic
CATTTCTAGCTTTAGGTTTA+GGG 0.192317 3.1:+50203514 None:intergenic
ATGCAACATGTTTGCGTCTT+TGG 0.207307 3.1:-50202122 MS.gene41585:CDS
AGGAGGAAATTGAAGCTTTA+AGG 0.213791 3.1:-50201991 MS.gene41585:CDS
GATGAAAATAGTATAGATTT+TGG 0.226632 3.1:-50202178 MS.gene41585:CDS
CCTTTGCCTATAGGCTATTA+TGG 0.228956 3.1:-50202427 MS.gene41585:CDS
CCTTTCTTCTCTTCATTACT+TGG 0.251953 3.1:-50203007 MS.gene41585:CDS
AAGTTACCCTTTGCTATTCA+TGG 0.268633 3.1:-50202923 MS.gene41585:CDS
TGACAGAGTGGAAGCATTTA+GGG 0.282415 3.1:-50202207 MS.gene41585:CDS
TTAACTCCTCCTTTCATTGA+TGG 0.282796 3.1:+50202055 None:intergenic
GATTATTATTATCCTCTTGC+AGG 0.285447 3.1:-50203299 MS.gene41585:intron
ACAATTCATGATTCTGATTC+GGG 0.295244 3.1:-50203368 MS.gene41585:CDS
GAAAATGCAATAGGTTCTTT+TGG 0.302786 3.1:+50202694 None:intergenic
GTTGATCAAAGAGACTAAAA+AGG 0.312335 3.1:-50202329 MS.gene41585:CDS
CACCTTTCATTTCTAGCTTT+AGG 0.318212 3.1:+50203507 None:intergenic
GGTGTTGGTGGTGCAGAATA+TGG 0.338152 3.1:-50203063 MS.gene41585:CDS
GGTTATGATCCTTTGCCTAT+AGG 0.339096 3.1:-50202436 MS.gene41585:CDS
AACAATTCATGATTCTGATT+CGG 0.342734 3.1:-50203369 MS.gene41585:CDS
AACCTTGGCATGGCAGCAAC+AGG 0.347381 3.1:+50202016 None:intergenic
CATGTTGTTTGTGATGGATA+TGG 0.348097 3.1:-50202853 MS.gene41585:CDS
ATTTGTGGTGGTTTCACAAT+TGG 0.352743 3.1:-50202889 MS.gene41585:CDS
AGAAGCACTCTCAAAGGCTT+TGG 0.364642 3.1:-50203321 MS.gene41585:CDS
TGGTGGAAGTGGTTGTTTGC+TGG 0.388443 3.1:+50202726 None:intergenic
GGTGGTTTCACAATTGGAAT+GGG 0.391685 3.1:-50202883 MS.gene41585:CDS
GACTCTAAGTCTTCCGTCTC+CGG 0.398680 3.1:+50203092 None:intergenic
TGGTGGTTTCACAATTGGAA+TGG 0.410300 3.1:-50202884 MS.gene41585:CDS
AGTGACTCAAAAGTTGTAAC+TGG 0.415404 3.1:+50202559 None:intergenic
TGCTGCCATGCCAAGGTTCA+AGG 0.423876 3.1:-50202011 MS.gene41585:CDS
ACTAAAGGTGAAAATGCAAT+AGG 0.435135 3.1:+50202685 None:intergenic
TCAGAATCATGAATTGTTGA+TGG 0.437948 3.1:+50203374 None:intergenic
TCAATTTCCTCCTTGAACCT+TGG 0.439469 3.1:+50202001 None:intergenic
TTAGCATATGCTTCTAAGAA+TGG 0.443157 3.1:+50203036 None:intergenic
GCAATTGTTGAACTTGCAAA+AGG 0.451246 3.1:-50202811 MS.gene41585:CDS
GCAATGTTGAATATGTTAGT+TGG 0.459678 3.1:-50202478 MS.gene41585:CDS
TGTTCACATGTTGTTTGTGA+TGG 0.460683 3.1:-50202859 MS.gene41585:CDS
TCATCGTCATCAACTTTACT+AGG 0.462608 3.1:+50202079 None:intergenic
GGAAGACTTAGAGTCGAGTT+TGG 0.466467 3.1:-50203084 MS.gene41585:CDS
GTCAAGCCGTTCATGTATAC+CGG 0.470650 3.1:-50203397 MS.gene41585:CDS
ACTTAAGATGAGTTTGATGA+AGG 0.481102 3.1:-50202602 MS.gene41585:CDS
TCCCTGTTGCTGCCATGCCA+AGG 0.485568 3.1:-50202018 MS.gene41585:CDS
GGTTGAAGTAATGGTGGAAG+TGG 0.490092 3.1:+50202715 None:intergenic
CCAAGTAATGAAGAGAAGAA+AGG 0.491172 3.1:+50203007 None:intergenic
TCTTGCTTATGCTCCGTCTC+CGG 0.493846 3.1:+50202265 None:intergenic
GTATTACCATAATAGCCTAT+AGG 0.499755 3.1:+50202421 None:intergenic
AAGATGAGTTTGATGAAGGA+AGG 0.508475 3.1:-50202598 MS.gene41585:CDS
CAAGTAATGAAGAGAAGAAA+GGG 0.508480 3.1:+50203008 None:intergenic
AATACAAGAAGGAATGGACT+TGG 0.517455 3.1:+50203466 None:intergenic
AGAAAGAATACAAGAAGGAA+TGG 0.519099 3.1:+50203460 None:intergenic
TTGTCACCATGAATAGCAAA+GGG 0.521433 3.1:+50202917 None:intergenic
CTTAGAGTCGAGTTTGGTGT+TGG 0.525295 3.1:-50203078 MS.gene41585:CDS
GGTATTAGACGCAGCATGAA+AGG 0.539854 3.1:-50202457 MS.gene41585:CDS
CACTTGGTGCTTATGTGTGG+AGG 0.540041 3.1:-50202540 MS.gene41585:CDS
TTTGTCACCATGAATAGCAA+AGG 0.542722 3.1:+50202916 None:intergenic
ATTTCTAGCTTTAGGTTTAG+GGG 0.543168 3.1:+50203515 None:intergenic
TTCCTCCTTGAACCTTGGCA+TGG 0.549243 3.1:+50202006 None:intergenic
GACAGAGAAAGAATACAAGA+AGG 0.550104 3.1:+50203455 None:intergenic
CTCGATCGACACTCCGGAGA+CGG 0.550133 3.1:-50202278 MS.gene41585:CDS
CACAGATATTGCAAAAGACT+TGG 0.550145 3.1:-50202974 MS.gene41585:CDS
AGTCACTTGGTGCTTATGTG+TGG 0.550371 3.1:-50202543 MS.gene41585:CDS
AGAGTCGAGTTTGGTGTTGG+TGG 0.551439 3.1:-50203075 MS.gene41585:CDS
TATGGTAATACTACTGTGGA+TGG 0.554439 3.1:-50202409 MS.gene41585:CDS
AACTTAACAATTTCATAGAG+TGG 0.558390 3.1:+50202349 None:intergenic
GCGTTACAACTTAGCACCAA+TGG 0.558556 3.1:-50202505 MS.gene41585:CDS
AACATGTTTGCGTCTTTGGA+AGG 0.558593 3.1:-50202118 MS.gene41585:CDS
TCCCACACAGGTATCAAAGA+AGG 0.562616 3.1:+50202778 None:intergenic
AATCATGAATTGTTGATGGC+CGG 0.563884 3.1:+50203378 None:intergenic
CAAGAAGGAATGGACTTGGA+TGG 0.571444 3.1:+50203470 None:intergenic
TTTACAAGTATACCTGCAAG+AGG 0.571753 3.1:+50203287 None:intergenic
CCATAATAGCCTATAGGCAA+AGG 0.572234 3.1:+50202427 None:intergenic
GACGATGATCCATCAATGAA+AGG 0.575340 3.1:-50202064 MS.gene41585:CDS
GTGACAAAATTTATTTGTGG+TGG 0.581717 3.1:-50202901 MS.gene41585:CDS
AACCTAAAGCTAGAAATGAA+AGG 0.582115 3.1:-50203509 MS.gene41585:CDS
GCCTTCTTTGATACCTGTGT+GGG 0.586177 3.1:-50202779 MS.gene41585:CDS
GCAAACATGTTGCATGGTGC+TGG 0.589020 3.1:+50202130 None:intergenic
GTGGTTTCACAATTGGAATG+GGG 0.594042 3.1:-50202882 MS.gene41585:CDS
ATTCAAAGAAGCACTCTCAA+AGG 0.600716 3.1:-50203327 MS.gene41585:CDS
ACATGTTTGCGTCTTTGGAA+GGG 0.601109 3.1:-50202117 MS.gene41585:CDS
ATGGTGACAAAATTTATTTG+TGG 0.603646 3.1:-50202904 MS.gene41585:CDS
GGTAGACTAGTGAGACATGC+CGG 0.607006 3.1:-50203111 MS.gene41585:CDS
TGATGGCCGGTATACATGAA+CGG 0.611658 3.1:+50203391 None:intergenic
CTAGTGAGACATGCCGGAGA+CGG 0.615424 3.1:-50203105 MS.gene41585:CDS
TGGGAAAGAGAGAGACTAGT+CGG 0.629708 3.1:-50202760 MS.gene41585:CDS
GCTTCTTTGAATACATGACA+AGG 0.632259 3.1:+50203338 None:intergenic
ATACATGAACGGCTTGACAA+AGG 0.635045 3.1:+50203402 None:intergenic
AAAGACGCAAACATGTTGCA+TGG 0.635230 3.1:+50202124 None:intergenic
CTATTATGGTAATACTACTG+TGG 0.648488 3.1:-50202413 MS.gene41585:CDS
AGTCTCTCTCTTTCCCACAC+AGG 0.649952 3.1:+50202766 None:intergenic
CGGTAACGATTCTGACAGAG+TGG 0.653117 3.1:-50202219 MS.gene41585:CDS
AGCCTTCTTTGATACCTGTG+TGG 0.653186 3.1:-50202780 MS.gene41585:CDS
ACCTTGGCATGGCAGCAACA+GGG 0.654343 3.1:+50202017 None:intergenic
ACTTGGTGCTTATGTGTGGA+GGG 0.659872 3.1:-50202539 MS.gene41585:CDS
TAGCATGGACGGTAGCGGTG+CGG 0.664954 3.1:-50202239 MS.gene41585:CDS
CTTCTTTGAATACATGACAA+GGG 0.672661 3.1:+50203339 None:intergenic
GATGATCCATCAATGAAAGG+AGG 0.676634 3.1:-50202061 MS.gene41585:CDS
TGCCATGCCAAGGTTCAAGG+AGG 0.734826 3.1:-50202008 MS.gene41585:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAAATCTATTGTTTTA+AGG - chr3.1:50202865-50202884 MS.gene41585:CDS 10.0%
!!! TAGATTTTAATAACTGTTTT+TGG + chr3.1:50202857-50202876 None:intergenic 15.0%
!! AGCATAAATACATGAATAAA+CGG + chr3.1:50202323-50202342 None:intergenic 20.0%
!!! AAAATAGTATAGATTTTGGA+GGG - chr3.1:50203338-50203357 MS.gene41585:CDS 20.0%
!!! GATGAAAATAGTATAGATTT+TGG - chr3.1:50203334-50203353 MS.gene41585:CDS 20.0%
! AACAATTCATGATTCTGATT+CGG - chr3.1:50202143-50202162 MS.gene41585:CDS 25.0%
! AACTTAACAATTTCATAGAG+TGG + chr3.1:50203166-50203185 None:intergenic 25.0%
! ATGGTGACAAAATTTATTTG+TGG - chr3.1:50202608-50202627 MS.gene41585:CDS 25.0%
!! GAAAATAGTATAGATTTTGG+AGG - chr3.1:50203337-50203356 MS.gene41585:CDS 25.0%
AACCTAAAGCTAGAAATGAA+AGG - chr3.1:50202003-50202022 MS.gene41585:CDS 30.0%
ACAATTCATGATTCTGATTC+GGG - chr3.1:50202144-50202163 MS.gene41585:CDS 30.0%
ACTAAAGGTGAAAATGCAAT+AGG + chr3.1:50202830-50202849 None:intergenic 30.0%
ACTTAAGATGAGTTTGATGA+AGG - chr3.1:50202910-50202929 MS.gene41585:CDS 30.0%
AGAAAGAATACAAGAAGGAA+TGG + chr3.1:50202055-50202074 None:intergenic 30.0%
ATACATGAATAAACGGTGTT+TGG + chr3.1:50202316-50202335 None:intergenic 30.0%
CAAGTAATGAAGAGAAGAAA+GGG + chr3.1:50202507-50202526 None:intergenic 30.0%
CTATTATGGTAATACTACTG+TGG - chr3.1:50203099-50203118 MS.gene41585:CDS 30.0%
CTTCTTTGAATACATGACAA+GGG + chr3.1:50202176-50202195 None:intergenic 30.0%
GATTATTATTATCCTCTTGC+AGG - chr3.1:50202213-50202232 MS.gene41585:CDS 30.0%
GCAATGTTGAATATGTTAGT+TGG - chr3.1:50203034-50203053 MS.gene41585:CDS 30.0%
GTATTACCATAATAGCCTAT+AGG + chr3.1:50203094-50203113 None:intergenic 30.0%
GTGACAAAATTTATTTGTGG+TGG - chr3.1:50202611-50202630 MS.gene41585:CDS 30.0%
GTTGATCAAAGAGACTAAAA+AGG - chr3.1:50203183-50203202 MS.gene41585:intron 30.0%
TCAGAATCATGAATTGTTGA+TGG + chr3.1:50202141-50202160 None:intergenic 30.0%
! AAAGGGTAACTTTTATCTTG+AGG + chr3.1:50202581-50202600 None:intergenic 30.0%
! GAAAATGCAATAGGTTCTTT+TGG + chr3.1:50202821-50202840 None:intergenic 30.0%
! TAACTTTTATCTTGAGGAGA+AGG + chr3.1:50202575-50202594 None:intergenic 30.0%
! TTAGCATATGCTTCTAAGAA+TGG + chr3.1:50202479-50202498 None:intergenic 30.0%
!! ATTCAACATTGCTTTTCCAT+TGG + chr3.1:50203026-50203045 None:intergenic 30.0%
!! ATTTCTAGCTTTAGGTTTAG+GGG + chr3.1:50202000-50202019 None:intergenic 30.0%
!! CATTTCTAGCTTTAGGTTTA+GGG + chr3.1:50202001-50202020 None:intergenic 30.0%
!! TCATTTCTAGCTTTAGGTTT+AGG + chr3.1:50202002-50202021 None:intergenic 30.0%
!!! ACTGTTTTTGGTTGAACTAA+AGG + chr3.1:50202845-50202864 None:intergenic 30.0%
AAGATGAGTTTGATGAAGGA+AGG - chr3.1:50202914-50202933 MS.gene41585:CDS 35.0%
AGGAGGAAATTGAAGCTTTA+AGG - chr3.1:50203521-50203540 MS.gene41585:CDS 35.0%
AGTGACTCAAAAGTTGTAAC+TGG + chr3.1:50202956-50202975 None:intergenic 35.0%
ATTTGTGGTGGTTTCACAAT+TGG - chr3.1:50202623-50202642 MS.gene41585:CDS 35.0%
CACAGATATTGCAAAAGACT+TGG - chr3.1:50202538-50202557 MS.gene41585:CDS 35.0%
CCAAGTAATGAAGAGAAGAA+AGG + chr3.1:50202508-50202527 None:intergenic 35.0%
CCTTTCTTCTCTTCATTACT+TGG - chr3.1:50202505-50202524 MS.gene41585:CDS 35.0%
GACAGAGAAAGAATACAAGA+AGG + chr3.1:50202060-50202079 None:intergenic 35.0%
GCAATTGTTGAACTTGCAAA+AGG - chr3.1:50202701-50202720 MS.gene41585:CDS 35.0%
GCTTCTTTGAATACATGACA+AGG + chr3.1:50202177-50202196 None:intergenic 35.0%
TATGGTAATACTACTGTGGA+TGG - chr3.1:50203103-50203122 MS.gene41585:CDS 35.0%
TCATCGTCATCAACTTTACT+AGG + chr3.1:50203436-50203455 None:intergenic 35.0%
TTAACTCCTCCTTTCATTGA+TGG + chr3.1:50203460-50203479 None:intergenic 35.0%
TTGTCACCATGAATAGCAAA+GGG + chr3.1:50202598-50202617 None:intergenic 35.0%
TTTACAAGTATACCTGCAAG+AGG + chr3.1:50202228-50202247 None:intergenic 35.0%
TTTGTCACCATGAATAGCAA+AGG + chr3.1:50202599-50202618 None:intergenic 35.0%
! AATACAAGAAGGAATGGACT+TGG + chr3.1:50202049-50202068 None:intergenic 35.0%
! TGTTCACATGTTGTTTGTGA+TGG - chr3.1:50202653-50202672 MS.gene41585:CDS 35.0%
!! AAGCAAGATTTTAGCATGGA+CGG - chr3.1:50203262-50203281 MS.gene41585:intron 35.0%
!! AAGTTACCCTTTGCTATTCA+TGG - chr3.1:50202589-50202608 MS.gene41585:CDS 35.0%
!! AATCATGAATTGTTGATGGC+CGG + chr3.1:50202137-50202156 None:intergenic 35.0%
!! ATTCAAAGAAGCACTCTCAA+AGG - chr3.1:50202185-50202204 MS.gene41585:CDS 35.0%
!! CACCTTTCATTTCTAGCTTT+AGG + chr3.1:50202008-50202027 None:intergenic 35.0%
!! CATGTTGTTTGTGATGGATA+TGG - chr3.1:50202659-50202678 MS.gene41585:CDS 35.0%
!! GCATAAGCAAGATTTTAGCA+TGG - chr3.1:50203258-50203277 MS.gene41585:intron 35.0%
!! GGTTCTTTTGGTTGAAGTAA+TGG + chr3.1:50202809-50202828 None:intergenic 35.0%
!! GTTACAACTTTTGAGTCACT+TGG - chr3.1:50202956-50202975 MS.gene41585:CDS 35.0%
!! TCTTTTGGTTGAAGTAATGG+TGG + chr3.1:50202806-50202825 None:intergenic 35.0%
!!! TTGTTTTAAGGTTGAGAGTG+AGG - chr3.1:50202877-50202896 MS.gene41585:CDS 35.0%
AAAGACGCAAACATGTTGCA+TGG + chr3.1:50203391-50203410 None:intergenic 40.0%
AACATGTTTGCGTCTTTGGA+AGG - chr3.1:50203394-50203413 MS.gene41585:CDS 40.0%
AACTTCTCAATCCATTTCCC+AGG - chr3.1:50202380-50202399 MS.gene41585:CDS 40.0%
ATACATGAACGGCTTGACAA+AGG + chr3.1:50202113-50202132 None:intergenic 40.0%
ATGCAACATGTTTGCGTCTT+TGG - chr3.1:50203390-50203409 MS.gene41585:CDS 40.0%
CCATAATAGCCTATAGGCAA+AGG + chr3.1:50203088-50203107 None:intergenic 40.0%
CCTTTGCCTATAGGCTATTA+TGG - chr3.1:50203085-50203104 MS.gene41585:CDS 40.0%
GACGATGATCCATCAATGAA+AGG - chr3.1:50203448-50203467 MS.gene41585:CDS 40.0%
GATGATCCATCAATGAAAGG+AGG - chr3.1:50203451-50203470 MS.gene41585:CDS 40.0%
GGTGGTTTCACAATTGGAAT+GGG - chr3.1:50202629-50202648 MS.gene41585:CDS 40.0%
GGTTATGATCCTTTGCCTAT+AGG - chr3.1:50203076-50203095 MS.gene41585:CDS 40.0%
GTGGTTTCACAATTGGAATG+GGG - chr3.1:50202630-50202649 MS.gene41585:CDS 40.0%
TCAATTTCCTCCTTGAACCT+TGG + chr3.1:50203514-50203533 None:intergenic 40.0%
TGGTGGTTTCACAATTGGAA+TGG - chr3.1:50202628-50202647 MS.gene41585:CDS 40.0%
! ACATGTTTGCGTCTTTGGAA+GGG - chr3.1:50203395-50203414 MS.gene41585:CDS 40.0%
! CGAGTTTTTGACATAACCAG+TGG + chr3.1:50203218-50203237 None:intergenic 40.0%
! GTTTTTGACATAACCAGTGG+TGG + chr3.1:50203215-50203234 None:intergenic 40.0%
! TGGATTGAGAAGTTGGTTAG+TGG + chr3.1:50202374-50202393 None:intergenic 40.0%
!! TGACAGAGTGGAAGCATTTA+GGG - chr3.1:50203305-50203324 MS.gene41585:CDS 40.0%
!! TGGGAAATGGATTGAGAAGT+TGG + chr3.1:50202381-50202400 None:intergenic 40.0%
AAAAAGGTTGCTTCCACCAC+TGG - chr3.1:50203199-50203218 MS.gene41585:intron 45.0%
AGCCTTCTTTGATACCTGTG+TGG - chr3.1:50202732-50202751 MS.gene41585:CDS 45.0%
CAAAAACTCGATCGACACTC+CGG - chr3.1:50203228-50203247 MS.gene41585:intron 45.0%
GCCTTCTTTGATACCTGTGT+GGG - chr3.1:50202733-50202752 MS.gene41585:CDS 45.0%
GCGTTACAACTTAGCACCAA+TGG - chr3.1:50203007-50203026 MS.gene41585:CDS 45.0%
GGAAGACTTAGAGTCGAGTT+TGG - chr3.1:50202428-50202447 MS.gene41585:CDS 45.0%
GGTATTAGACGCAGCATGAA+AGG - chr3.1:50203055-50203074 MS.gene41585:CDS 45.0%
GTCAAGCCGTTCATGTATAC+CGG - chr3.1:50202115-50202134 MS.gene41585:CDS 45.0%
TCCCACACAGGTATCAAAGA+AGG + chr3.1:50202737-50202756 None:intergenic 45.0%
TGATGGCCGGTATACATGAA+CGG + chr3.1:50202124-50202143 None:intergenic 45.0%
TGGGAAAGAGAGAGACTAGT+CGG - chr3.1:50202752-50202771 MS.gene41585:CDS 45.0%
! CAAGAAGGAATGGACTTGGA+TGG + chr3.1:50202045-50202064 None:intergenic 45.0%
! CATGTCTCACTAGTCTACCT+GGG + chr3.1:50202400-50202419 None:intergenic 45.0%
! GGTTGAAGTAATGGTGGAAG+TGG + chr3.1:50202800-50202819 None:intergenic 45.0%
! TCACTAGTCTACCTGGGAAA+TGG + chr3.1:50202394-50202413 None:intergenic 45.0%
!! ACTTGGTGCTTATGTGTGGA+GGG - chr3.1:50202973-50202992 MS.gene41585:CDS 45.0%
!! AGAAGCACTCTCAAAGGCTT+TGG - chr3.1:50202191-50202210 MS.gene41585:CDS 45.0%
!! AGTCACTTGGTGCTTATGTG+TGG - chr3.1:50202969-50202988 MS.gene41585:CDS 45.0%
!! CTGACAGAGTGGAAGCATTT+AGG - chr3.1:50203304-50203323 MS.gene41585:CDS 45.0%
!! CTTAGAGTCGAGTTTGGTGT+TGG - chr3.1:50202434-50202453 MS.gene41585:CDS 45.0%
!! GATTTTAGCATGGACGGTAG+CGG - chr3.1:50203268-50203287 MS.gene41585:intron 45.0%
AGTCTCTCTCTTTCCCACAC+AGG + chr3.1:50202749-50202768 None:intergenic 50.0%
CGGTAACGATTCTGACAGAG+TGG - chr3.1:50203293-50203312 MS.gene41585:intron 50.0%
GACTCTAAGTCTTCCGTCTC+CGG + chr3.1:50202423-50202442 None:intergenic 50.0%
GCAAACATGTTGCATGGTGC+TGG + chr3.1:50203385-50203404 None:intergenic 50.0%
GGTAGACTAGTGAGACATGC+CGG - chr3.1:50202401-50202420 MS.gene41585:CDS 50.0%
TCTTGCTTATGCTCCGTCTC+CGG + chr3.1:50203250-50203269 None:intergenic 50.0%
TGGTGGAAGTGGTTGTTTGC+TGG + chr3.1:50202789-50202808 None:intergenic 50.0%
TTCCTCCTTGAACCTTGGCA+TGG + chr3.1:50203509-50203528 None:intergenic 50.0%
! GCATGTCTCACTAGTCTACC+TGG + chr3.1:50202401-50202420 None:intergenic 50.0%
!! AGAGTCGAGTTTGGTGTTGG+TGG - chr3.1:50202437-50202456 MS.gene41585:CDS 50.0%
!! CACTTGGTGCTTATGTGTGG+AGG - chr3.1:50202972-50202991 MS.gene41585:CDS 50.0%
!! GGTGTTGGTGGTGCAGAATA+TGG - chr3.1:50202449-50202468 MS.gene41585:CDS 50.0%
AACCTTGGCATGGCAGCAAC+AGG + chr3.1:50203499-50203518 None:intergenic 55.0%
ACCTTGGCATGGCAGCAACA+GGG + chr3.1:50203498-50203517 None:intergenic 55.0%
CTAGTGAGACATGCCGGAGA+CGG - chr3.1:50202407-50202426 MS.gene41585:CDS 55.0%
TGCCATGCCAAGGTTCAAGG+AGG - chr3.1:50203504-50203523 MS.gene41585:CDS 55.0%
TGCTGCCATGCCAAGGTTCA+AGG - chr3.1:50203501-50203520 MS.gene41585:CDS 55.0%
CTCGATCGACACTCCGGAGA+CGG - chr3.1:50203234-50203253 MS.gene41585:intron 60.0%
TCCCTGTTGCTGCCATGCCA+AGG - chr3.1:50203494-50203513 MS.gene41585:CDS 60.0%
! TAGCATGGACGGTAGCGGTG+CGG - chr3.1:50203273-50203292 MS.gene41585:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 50201979 50203555 50201979 ID=MS.gene41585
chr3.1 mRNA 50201979 50203555 50201979 ID=MS.gene41585.t1;Parent=MS.gene41585
chr3.1 exon 50203300 50203555 50203300 ID=MS.gene41585.t1.exon1;Parent=MS.gene41585.t1
chr3.1 CDS 50203300 50203555 50203300 ID=cds.MS.gene41585.t1;Parent=MS.gene41585.t1
chr3.1 exon 50201979 50203132 50201979 ID=MS.gene41585.t1.exon2;Parent=MS.gene41585.t1
chr3.1 CDS 50201979 50203132 50201979 ID=cds.MS.gene41585.t1;Parent=MS.gene41585.t1
Gene Sequence

>MS.gene41585

ATGGCGTATCAGAAAGCACCCCTAAACCTAAAGCTAGAAATGAAAGGTGTTGTGTTTGTAAAACCATCCAAGTCCATTCCTTCTTGTATTCTTTCTCTGTCTACACTTGACAATAAAGACAACAATAATAACCTTTGTCAAGCCGTTCATGTATACCGGCCATCAACAATTCATGATTCTGATTCGGGTTTCGACCCTTGTCATGTATTCAAAGAAGCACTCTCAAAGGCTTTGGATTATTATTATCCTCTTGCAGGTATACTTGTAAAAAAGAACTTTTATAATGATAAATGTTACTAATGAATTGTTATAGCATAAATTTATGTGTGTGTATCCAAACACCGTTTATTCATGTATTTATGCTCGTGATCATAGAAGAATGTCTCGTTAAACCACTAACCAACTTCTCAATCCATTTCCCAGGTAGACTAGTGAGACATGCCGGAGACGGAAGACTTAGAGTCGAGTTTGGTGTTGGTGGTGCAGAATATGGTGTTCCATTCTTAGAAGCATATGCTAATTGCACCCTTTCTTCTCTTCATTACTTGGACAATACTGACACAGATATTGCAAAAGACTTGGTGCTTGATGTTCCTTCTCCTCAAGATAAAAGTTACCCTTTGCTATTCATGGTGACAAAATTTATTTGTGGTGGTTTCACAATTGGAATGGGGTGTTCACATGTTGTTTGTGATGGATATGGTTCAATTCAAGTCTTCAAAGCAATTGTTGAACTTGCAAAAGGAAGAAGTGAGCCTTCTTTGATACCTGTGTGGGAAAGAGAGAGACTAGTCGGTTCAACAAGTACCAGCAAACAACCACTTCCACCATTACTTCAACCAAAAGAACCTATTGCATTTTCACCTTTAGTTCAACCAAAAACAGTTATTAAAATCTATTGTTTTAAGGTTGAGAGTGAGGTGATAAAAAAACTTAAGATGAGTTTGATGAAGGAAGGTGATAGTGAAAGTGAACCAGTTACAACTTTTGAGTCACTTGGTGCTTATGTGTGGAGGGCAAGAGCAAGAGCGTTACAACTTAGCACCAATGGAAAAGCAATGTTGAATATGTTAGTTGGTATTAGACGCAGCATGAAAGGTTATGATCCTTTGCCTATAGGCTATTATGGTAATACTACTGTGGATGGAAAAGTTGTGCTAAAAGTGAGTGAGCTCAATGAAATGCCACTCTATGAAATTGTTAAGTTGATCAAAGAGACTAAAAAGGTTGCTTCCACCACTGGTTATGTCAAAAACTCGATCGACACTCCGGAGACGGAGCATAAGCAAGATTTTAGCATGGACGGTAGCGGTGCGGTAACGATTCTGACAGAGTGGAAGCATTTAGGGTTTCTTGATGAAAATAGTATAGATTTTGGAGGGTATGAATCAGTGAATTTTGTACCAGCACCATGCAACATGTTTGCGTCTTTGGAAGGGTGCATTTTCGCATCTCCTAGTAAAGTTGATGACGATGATCCATCAATGAAAGGAGGAGTTAAGATTTTCACATCACTCCCTGTTGCTGCCATGCCAAGGTTCAAGGAGGAAATTGAAGCTTTAAGGTTACTTAATTGA
Protein sequence

>MS.gene41585.t1

MAYQKAPLNLKLEMKGVVFVKPSKSIPSCILSLSTLDNKDNNNNLCQAVHVYRPSTIHDSDSGFDPCHVFKEALSKALDYYYPLAGRLVRHAGDGRLRVEFGVGGAEYGVPFLEAYANCTLSSLHYLDNTDTDIAKDLVLDVPSPQDKSYPLLFMVTKFICGGFTIGMGCSHVVCDGYGSIQVFKAIVELAKGRSEPSLIPVWERERLVGSTSTSKQPLPPLLQPKEPIAFSPLVQPKTVIKIYCFKVESEVIKKLKMSLMKEGDSESEPVTTFESLGAYVWRARARALQLSTNGKAMLNMLVGIRRSMKGYDPLPIGYYGNTTVDGKVVLKVSELNEMPLYEIVKLIKETKKVASTTGYVKNSIDTPETEHKQDFSMDGSGAVTILTEWKHLGFLDENSIDFGGYESVNFVPAPCNMFASLEGCIFASPSKVDDDDPSMKGGVKIFTSLPVAAMPRFKEEIEALRLLN