Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44005.t1 | GAU21457.1 | 73.2 | 138 | 33 | 1 | 1 | 138 | 1 | 134 | 5.60E-38 | 167.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44005.t1 | Q9XH46 | 70.2 | 141 | 37 | 2 | 1 | 140 | 1 | 137 | 1.3e-38 | 160.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44005.t1 | A0A2Z6MXB2 | 73.2 | 138 | 33 | 1 | 1 | 138 | 1 | 134 | 4.0e-38 | 167.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049173 | MS.gene44005 | 0.810641 | 1.04E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene44005 | 0.814044 | 1.88E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene44005 | 0.814903 | 1.22E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene44005 | 0.820489 | 6.68E-53 | -1.69E-46 |
| MS.gene049427 | MS.gene44005 | 0.836758 | 7.76E-57 | -1.69E-46 |
| MS.gene049491 | MS.gene44005 | 0.813499 | 2.48E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene44005 | 0.822163 | 2.74E-53 | -1.69E-46 |
| MS.gene049614 | MS.gene44005 | 0.806247 | 9.02E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene44005 | 0.83982 | 1.26E-57 | -1.69E-46 |
| MS.gene049662 | MS.gene44005 | 0.830554 | 2.75E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene44005 | 0.850489 | 1.64E-60 | -1.69E-46 |
| MS.gene050076 | MS.gene44005 | 0.872824 | 2.36E-67 | -1.69E-46 |
| MS.gene050163 | MS.gene44005 | 0.801568 | 8.47E-49 | -1.69E-46 |
| MS.gene050397 | MS.gene44005 | 0.845579 | 3.72E-59 | -1.69E-46 |
| MS.gene050432 | MS.gene44005 | 0.891158 | 5.12E-74 | -1.69E-46 |
| MS.gene050529 | MS.gene44005 | 0.819604 | 1.06E-52 | -1.69E-46 |
| MS.gene050593 | MS.gene44005 | 0.818661 | 1.74E-52 | -1.69E-46 |
| MS.gene050686 | MS.gene44005 | 0.814775 | 1.30E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene44005 | 0.860987 | 1.41E-63 | -1.69E-46 |
| MS.gene050770 | MS.gene44005 | 0.860837 | 1.56E-63 | -1.69E-46 |
| MS.gene050772 | MS.gene44005 | 0.829217 | 5.83E-55 | -1.69E-46 |
| MS.gene05100 | MS.gene44005 | 0.813721 | 2.22E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene44005 | 0.862033 | 6.75E-64 | -1.69E-46 |
| MS.gene05105 | MS.gene44005 | 0.815782 | 7.75E-52 | -1.69E-46 |
| MS.gene051228 | MS.gene44005 | 0.850974 | 1.20E-60 | -1.69E-46 |
| MS.gene051666 | MS.gene44005 | 0.879382 | 1.30E-69 | -1.69E-46 |
| MS.gene051692 | MS.gene44005 | 0.886397 | 3.54E-72 | -1.69E-46 |
| MS.gene051810 | MS.gene44005 | 0.811165 | 8.03E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene44005 | 0.830938 | 2.22E-55 | -1.69E-46 |
| MS.gene051877 | MS.gene44005 | 0.821408 | 4.10E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene44005 | 0.841372 | 4.94E-58 | -1.69E-46 |
| MS.gene052271 | MS.gene44005 | 0.836828 | 7.44E-57 | -1.69E-46 |
| MS.gene052290 | MS.gene44005 | 0.851544 | 8.28E-61 | -1.69E-46 |
| MS.gene052310 | MS.gene44005 | 0.830933 | 2.22E-55 | -1.69E-46 |
| MS.gene052322 | MS.gene44005 | 0.834121 | 3.60E-56 | -1.69E-46 |
| MS.gene052326 | MS.gene44005 | 0.835694 | 1.45E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene44005 | 0.801081 | 1.07E-48 | -1.69E-46 |
| MS.gene052379 | MS.gene44005 | 0.843873 | 1.07E-58 | -1.69E-46 |
| MS.gene052421 | MS.gene44005 | 0.80922 | 2.11E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene44005 | 0.836942 | 6.96E-57 | -1.69E-46 |
| MS.gene052484 | MS.gene44005 | 0.848541 | 5.74E-60 | -1.69E-46 |
| MS.gene052485 | MS.gene44005 | 0.802622 | 5.14E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene44005 | 0.808892 | 2.48E-50 | -1.69E-46 |
| MS.gene052777 | MS.gene44005 | -0.800428 | 1.45E-48 | -1.69E-46 |
| MS.gene053009 | MS.gene44005 | 0.826337 | 2.87E-54 | -1.69E-46 |
| MS.gene053103 | MS.gene44005 | 0.897563 | 1.25E-76 | -1.69E-46 |
| MS.gene053104 | MS.gene44005 | 0.904132 | 1.69E-79 | -1.69E-46 |
| MS.gene053207 | MS.gene44005 | 0.835995 | 1.21E-56 | -1.69E-46 |
| MS.gene053209 | MS.gene44005 | 0.859157 | 5.02E-63 | -1.69E-46 |
| MS.gene053213 | MS.gene44005 | 0.833755 | 4.44E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene44005 | 0.826025 | 3.40E-54 | -1.69E-46 |
| MS.gene053322 | MS.gene44005 | 0.887068 | 1.97E-72 | -1.69E-46 |
| MS.gene053449 | MS.gene44005 | 0.830804 | 2.39E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene44005 | 0.821934 | 3.10E-53 | -1.69E-46 |
| MS.gene053813 | MS.gene44005 | 0.8146 | 1.42E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene44005 | 0.813605 | 2.35E-51 | -1.69E-46 |
| MS.gene054376 | MS.gene44005 | 0.862977 | 3.46E-64 | -1.69E-46 |
| MS.gene054600 | MS.gene44005 | 0.80836 | 3.22E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene44005 | 0.848631 | 5.42E-60 | -1.69E-46 |
| MS.gene054802 | MS.gene44005 | 0.829682 | 4.49E-55 | -1.69E-46 |
| MS.gene054803 | MS.gene44005 | 0.82419 | 9.23E-54 | -1.69E-46 |
| MS.gene054804 | MS.gene44005 | 0.831933 | 1.26E-55 | -1.69E-46 |
| MS.gene054955 | MS.gene44005 | 0.817765 | 2.78E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene44005 | 0.836525 | 8.89E-57 | -1.69E-46 |
| MS.gene055116 | MS.gene44005 | 0.821912 | 3.14E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene44005 | 0.848431 | 6.16E-60 | -1.69E-46 |
| MS.gene055212 | MS.gene44005 | 0.825067 | 5.74E-54 | -1.69E-46 |
| MS.gene055254 | MS.gene44005 | 0.847765 | 9.40E-60 | -1.69E-46 |
| MS.gene055277 | MS.gene44005 | 0.862651 | 4.36E-64 | -1.69E-46 |
| MS.gene055289 | MS.gene44005 | 0.818497 | 1.90E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene44005 | 0.819031 | 1.44E-52 | -1.69E-46 |
| MS.gene055397 | MS.gene44005 | 0.847798 | 9.20E-60 | -1.69E-46 |
| MS.gene055428 | MS.gene44005 | 0.818906 | 1.53E-52 | -1.69E-46 |
| MS.gene055499 | MS.gene44005 | 0.847848 | 8.92E-60 | -1.69E-46 |
| MS.gene055636 | MS.gene44005 | 0.801862 | 7.37E-49 | -1.69E-46 |
| MS.gene055647 | MS.gene44005 | 0.835973 | 1.23E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene44005 | 0.866704 | 2.35E-65 | -1.69E-46 |
| MS.gene055896 | MS.gene44005 | 0.815756 | 7.85E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene44005 | 0.877576 | 5.63E-69 | -1.69E-46 |
| MS.gene055941 | MS.gene44005 | 0.801129 | 1.04E-48 | -1.69E-46 |
| MS.gene056083 | MS.gene44005 | 0.822893 | 1.86E-53 | -1.69E-46 |
| MS.gene056191 | MS.gene44005 | 0.822815 | 1.94E-53 | -1.69E-46 |
| MS.gene056374 | MS.gene44005 | 0.880209 | 6.63E-70 | -1.69E-46 |
| MS.gene056410 | MS.gene44005 | 0.833041 | 6.70E-56 | -1.69E-46 |
| MS.gene056511 | MS.gene44005 | 0.81104 | 8.54E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene44005 | 0.84317 | 1.65E-58 | -1.69E-46 |
| MS.gene056657 | MS.gene44005 | 0.821462 | 3.99E-53 | -1.69E-46 |
| MS.gene056796 | MS.gene44005 | 0.801662 | 8.10E-49 | -1.69E-46 |
| MS.gene056897 | MS.gene44005 | 0.834341 | 3.17E-56 | -1.69E-46 |
| MS.gene057011 | MS.gene44005 | 0.832155 | 1.11E-55 | -1.69E-46 |
| MS.gene05702 | MS.gene44005 | 0.804343 | 2.26E-49 | -1.69E-46 |
| MS.gene057123 | MS.gene44005 | 0.836978 | 6.81E-57 | -1.69E-46 |
| MS.gene057129 | MS.gene44005 | 0.881013 | 3.41E-70 | -1.69E-46 |
| MS.gene057146 | MS.gene44005 | 0.825487 | 4.56E-54 | -1.69E-46 |
| MS.gene057196 | MS.gene44005 | 0.816578 | 5.15E-52 | -1.69E-46 |
| MS.gene057295 | MS.gene44005 | 0.877624 | 5.41E-69 | -1.69E-46 |
| MS.gene057331 | MS.gene44005 | 0.832369 | 9.83E-56 | -1.69E-46 |
| MS.gene05733 | MS.gene44005 | 0.813293 | 2.76E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene44005 | 0.854153 | 1.49E-61 | -1.69E-46 |
| MS.gene057856 | MS.gene44005 | 0.80595 | 1.04E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene44005 | 0.855675 | 5.38E-62 | -1.69E-46 |
| MS.gene058006 | MS.gene44005 | 0.835974 | 1.23E-56 | -1.69E-46 |
| MS.gene058019 | MS.gene44005 | 0.839595 | 1.44E-57 | -1.69E-46 |
| MS.gene058293 | MS.gene44005 | 0.845713 | 3.42E-59 | -1.69E-46 |
| MS.gene058323 | MS.gene44005 | 0.81936 | 1.21E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene44005 | 0.834979 | 2.19E-56 | -1.69E-46 |
| MS.gene058657 | MS.gene44005 | -0.800829 | 1.20E-48 | -1.69E-46 |
| MS.gene058660 | MS.gene44005 | 0.85434 | 1.31E-61 | -1.69E-46 |
| MS.gene058723 | MS.gene44005 | 0.817764 | 2.78E-52 | -1.69E-46 |
| MS.gene058787 | MS.gene44005 | 0.808101 | 3.65E-50 | -1.69E-46 |
| MS.gene058903 | MS.gene44005 | 0.80161 | 8.30E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene44005 | 0.817526 | 3.15E-52 | -1.69E-46 |
| MS.gene059029 | MS.gene44005 | 0.80812 | 3.62E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene44005 | 0.801388 | 9.22E-49 | -1.69E-46 |
| MS.gene05913 | MS.gene44005 | 0.817636 | 2.98E-52 | -1.69E-46 |
| MS.gene059326 | MS.gene44005 | 0.830226 | 3.31E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene44005 | 0.820169 | 7.90E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene44005 | 0.874495 | 6.46E-68 | -1.69E-46 |
| MS.gene059597 | MS.gene44005 | 0.833771 | 4.40E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene44005 | 0.819163 | 1.34E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene44005 | 0.840738 | 7.26E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene44005 | 0.847602 | 1.04E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene44005 | 0.848758 | 5.00E-60 | -1.69E-46 |
| MS.gene059711 | MS.gene44005 | 0.813954 | 1.97E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene44005 | 0.818523 | 1.88E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene44005 | 0.811375 | 7.22E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene44005 | 0.834292 | 3.26E-56 | -1.69E-46 |
| MS.gene059960 | MS.gene44005 | 0.859875 | 3.05E-63 | -1.69E-46 |
| MS.gene060193 | MS.gene44005 | 0.822486 | 2.31E-53 | -1.69E-46 |
| MS.gene06037 | MS.gene44005 | 0.805431 | 1.34E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene44005 | 0.842285 | 2.84E-58 | -1.69E-46 |
| MS.gene060482 | MS.gene44005 | 0.830678 | 2.57E-55 | -1.69E-46 |
| MS.gene060804 | MS.gene44005 | 0.908542 | 1.53E-81 | -1.69E-46 |
| MS.gene060818 | MS.gene44005 | 0.866104 | 3.64E-65 | -1.69E-46 |
| MS.gene060835 | MS.gene44005 | 0.800432 | 1.45E-48 | -1.69E-46 |
| MS.gene060837 | MS.gene44005 | 0.840727 | 7.31E-58 | -1.69E-46 |
| MS.gene06092 | MS.gene44005 | 0.800381 | 1.48E-48 | -1.69E-46 |
| MS.gene061041 | MS.gene44005 | 0.865543 | 5.47E-65 | -1.69E-46 |
| MS.gene061049 | MS.gene44005 | 0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene061051 | MS.gene44005 | -0.840152 | 1.03E-57 | -1.69E-46 |
| MS.gene061150 | MS.gene44005 | 0.815186 | 1.05E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene44005 | 0.865219 | 6.92E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44005.t1 | MTR_1g080910 | 90.210 | 143 | 7 | 2 | 1 | 140 | 1 | 139 | 8.74e-73 | 214 |
| MS.gene44005.t1 | MTR_1g080910 | 88.462 | 104 | 5 | 2 | 1 | 101 | 1 | 100 | 6.52e-44 | 140 |
| MS.gene44005.t1 | MTR_7g115180 | 70.707 | 99 | 24 | 2 | 47 | 140 | 46 | 144 | 7.08e-41 | 133 |
| MS.gene44005.t1 | MTR_7g115180 | 68.919 | 74 | 21 | 1 | 47 | 118 | 46 | 119 | 5.03e-27 | 97.8 |
| MS.gene44005.t1 | MTR_1g100220 | 40.260 | 77 | 45 | 1 | 49 | 125 | 75 | 150 | 9.29e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44005.t1 | AT5G28750 | 55.652 | 115 | 43 | 3 | 27 | 136 | 31 | 142 | 2.95e-36 | 122 |
| MS.gene44005.t1 | AT5G52440 | 52.083 | 48 | 23 | 0 | 60 | 107 | 85 | 132 | 3.48e-11 | 59.3 |
Find 31 sgRNAs with CRISPR-Local
Find 46 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTTTGTGCTTCTGTTTC+TGG | 0.042249 | 1.3:+57331242 | None:intergenic |
| CCAACTTCGGGCAATTTCTT+AGG | 0.195754 | 1.3:+57331141 | None:intergenic |
| TCTGGTTCTGGTTCTGGTTC+TGG | 0.213224 | 1.3:+57331260 | None:intergenic |
| TCTGTTTCTGGTTCTGGTTC+TGG | 0.213548 | 1.3:+57331254 | None:intergenic |
| TGTGCTTCTGTTTCTGGTTC+TGG | 0.214615 | 1.3:+57331248 | None:intergenic |
| CATTATTGTCTTGATCTTCT+TGG | 0.219177 | 1.3:+57330702 | None:intergenic |
| GAAATTTCTTCAGTAGAATT+AGG | 0.222712 | 1.3:+57330737 | None:intergenic |
| CCCGAGCTTGTTGTTATTGC+AGG | 0.253511 | 1.3:-57331186 | MS.gene44005:CDS |
| GCCGATGCTGCGACCAACTT+CGG | 0.342708 | 1.3:+57331128 | None:intergenic |
| TTTACTTGCAACGCCTTCTT+CGG | 0.349544 | 1.3:-57331219 | MS.gene44005:CDS |
| AAGTGATGTATTGTTAGAAT+TGG | 0.354759 | 1.3:+57331296 | None:intergenic |
| CCGATGCTGCGACCAACTTC+GGG | 0.355688 | 1.3:+57331129 | None:intergenic |
| TAAGAAGGATAAGGTGGAAT+AGG | 0.383721 | 1.3:+57331323 | None:intergenic |
| GTTAGAATTGGAAGCTAAGA+AGG | 0.407354 | 1.3:+57331308 | None:intergenic |
| GTGGAATAGGATGAAGAGAT+TGG | 0.421445 | 1.3:+57331336 | None:intergenic |
| GCGAATTAAAGAAGAAGAAA+GGG | 0.424605 | 1.3:+57331368 | None:intergenic |
| CTTCTTCTTTAATTCGCCCT+AGG | 0.426973 | 1.3:-57331362 | MS.gene44005:CDS |
| GGCGAATTAAAGAAGAAGAA+AGG | 0.452383 | 1.3:+57331367 | None:intergenic |
| AACTGTCAAAAGCTTCCAAC+AGG | 0.455252 | 1.3:-57331103 | MS.gene44005:intron |
| CCCGAAGTTGGTCGCAGCAT+CGG | 0.463383 | 1.3:-57331129 | MS.gene44005:CDS |
| CCTAAGAAATTGCCCGAAGT+TGG | 0.474122 | 1.3:-57331141 | MS.gene44005:CDS |
| ATTGGAAGCTAAGAAGGATA+AGG | 0.493246 | 1.3:+57331314 | None:intergenic |
| TGAAACCTTGTAGGCAGCAA+AGG | 0.513076 | 1.3:-57330786 | MS.gene44005:intron |
| TGCAACGCCTTCTTCGGATT+AGG | 0.521226 | 1.3:-57331213 | MS.gene44005:CDS |
| TCCTGCAATAACAACAAGCT+CGG | 0.534091 | 1.3:+57331185 | None:intergenic |
| CAATAATGTTTCTAGTACAA+AGG | 0.541741 | 1.3:-57330687 | MS.gene44005:CDS |
| ATGAAGAGATTGGAAGCCTA+GGG | 0.550257 | 1.3:+57331346 | None:intergenic |
| GATGAAGAGATTGGAAGCCT+AGG | 0.550349 | 1.3:+57331345 | None:intergenic |
| CCTGCAATAACAACAAGCTC+GGG | 0.555493 | 1.3:+57331186 | None:intergenic |
| GGAAGCTAAGAAGGATAAGG+TGG | 0.578078 | 1.3:+57331317 | None:intergenic |
| GGGCACGCCTAATCCGAAGA+AGG | 0.614059 | 1.3:+57331206 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCTTATTATCTAATTAA+CGG | - | chr1.3:57331057-57331076 | MS.gene44005:intron | 10.0% |
| !!! | TAAAATTGAAATTGTTTTAT+AGG | - | chr1.3:57331146-57331165 | MS.gene44005:CDS | 10.0% |
| !!! | CAAATTTTTATTGTTTGTTT+GGG | - | chr1.3:57331236-57331255 | MS.gene44005:CDS | 15.0% |
| !!! | GCAAATTTTTATTGTTTGTT+TGG | - | chr1.3:57331235-57331254 | MS.gene44005:CDS | 20.0% |
| ! | AAGTGATGTATTGTTAGAAT+TGG | + | chr1.3:57330767-57330786 | None:intergenic | 25.0% |
| ! | GAAATTTCTTCAGTAGAATT+AGG | + | chr1.3:57331326-57331345 | None:intergenic | 25.0% |
| ! | TTATCCTAAGAATGAGAAAA+TGG | + | chr1.3:57330985-57331004 | None:intergenic | 25.0% |
| !!! | ATTAGATTTTGAAACCTTGT+AGG | - | chr1.3:57331265-57331284 | MS.gene44005:CDS | 25.0% |
| !!! | ATTAGGTTCCTTTTTTAACT+CGG | + | chr1.3:57331309-57331328 | None:intergenic | 25.0% |
| !!! | CAATAATGTTTCTAGTACAA+AGG | - | chr1.3:57331373-57331392 | MS.gene44005:CDS | 25.0% |
| ATGTAGAACTCCTATATGTT+AGG | + | chr1.3:57331032-57331051 | None:intergenic | 30.0% | |
| CATTATTGTCTTGATCTTCT+TGG | + | chr1.3:57331361-57331380 | None:intergenic | 30.0% | |
| GCGAATTAAAGAAGAAGAAA+GGG | + | chr1.3:57330695-57330714 | None:intergenic | 30.0% | |
| TCATTCGTTGTATTTGAATG+AGG | - | chr1.3:57331190-57331209 | MS.gene44005:CDS | 30.0% | |
| !! | ATTTGTTGTGCCTAACATAT+AGG | - | chr1.3:57331019-57331038 | MS.gene44005:intron | 30.0% |
| AATGAGAAAATGGAACCTGT+TGG | + | chr1.3:57330975-57330994 | None:intergenic | 35.0% | |
| ATTGGAAGCTAAGAAGGATA+AGG | + | chr1.3:57330749-57330768 | None:intergenic | 35.0% | |
| GGCGAATTAAAGAAGAAGAA+AGG | + | chr1.3:57330696-57330715 | None:intergenic | 35.0% | |
| GTTAGAATTGGAAGCTAAGA+AGG | + | chr1.3:57330755-57330774 | None:intergenic | 35.0% | |
| TAAGAAGGATAAGGTGGAAT+AGG | + | chr1.3:57330740-57330759 | None:intergenic | 35.0% | |
| ! | GGTTCCATTTTCTCATTCTT+AGG | - | chr1.3:57330978-57330997 | MS.gene44005:intron | 35.0% |
| ! | GTTTGAGACCGAGTTAAAAA+AGG | - | chr1.3:57331298-57331317 | MS.gene44005:CDS | 35.0% |
| AACTGTCAAAAGCTTCCAAC+AGG | - | chr1.3:57330957-57330976 | MS.gene44005:intron | 40.0% | |
| ATGAAGAGATTGGAAGCCTA+GGG | + | chr1.3:57330717-57330736 | None:intergenic | 40.0% | |
| CTTCTTCTTTAATTCGCCCT+AGG | - | chr1.3:57330698-57330717 | MS.gene44005:CDS | 40.0% | |
| GTGGAATAGGATGAAGAGAT+TGG | + | chr1.3:57330727-57330746 | None:intergenic | 40.0% | |
| TCCTGCAATAACAACAAGCT+CGG | + | chr1.3:57330878-57330897 | None:intergenic | 40.0% | |
| TTTACTTGCAACGCCTTCTT+CGG | - | chr1.3:57330841-57330860 | MS.gene44005:intron | 40.0% | |
| AAACTCCTTTGCTGCCTACA+AGG | + | chr1.3:57331282-57331301 | None:intergenic | 45.0% | |
| ACGCTTTGTGCTTCTGTTTC+TGG | + | chr1.3:57330821-57330840 | None:intergenic | 45.0% | |
| CCAACTTCGGGCAATTTCTT+AGG | + | chr1.3:57330922-57330941 | None:intergenic | 45.0% | |
| CCTAAGAAATTGCCCGAAGT+TGG | - | chr1.3:57330919-57330938 | MS.gene44005:intron | 45.0% | |
| CCTGCAATAACAACAAGCTC+GGG | + | chr1.3:57330877-57330896 | None:intergenic | 45.0% | |
| GATGAAGAGATTGGAAGCCT+AGG | + | chr1.3:57330718-57330737 | None:intergenic | 45.0% | |
| GGAAGCTAAGAAGGATAAGG+TGG | + | chr1.3:57330746-57330765 | None:intergenic | 45.0% | |
| TGAAACCTTGTAGGCAGCAA+AGG | - | chr1.3:57331274-57331293 | MS.gene44005:CDS | 45.0% | |
| !! | TCTGTTTCTGGTTCTGGTTC+TGG | + | chr1.3:57330809-57330828 | None:intergenic | 45.0% |
| !! | TGTGCTTCTGTTTCTGGTTC+TGG | + | chr1.3:57330815-57330834 | None:intergenic | 45.0% |
| TGCAACGCCTTCTTCGGATT+AGG | - | chr1.3:57330847-57330866 | MS.gene44005:intron | 50.0% | |
| !! | CCCGAGCTTGTTGTTATTGC+AGG | - | chr1.3:57330874-57330893 | MS.gene44005:intron | 50.0% |
| !! | TCTGGTTCTGGTTCTGGTTC+TGG | + | chr1.3:57330803-57330822 | None:intergenic | 50.0% |
| !!! | GGAGTCGCTGCTCTTGTTTT+CGG | - | chr1.3:57330895-57330914 | MS.gene44005:intron | 50.0% |
| CCGATGCTGCGACCAACTTC+GGG | + | chr1.3:57330934-57330953 | None:intergenic | 60.0% | |
| GCCGATGCTGCGACCAACTT+CGG | + | chr1.3:57330935-57330954 | None:intergenic | 60.0% | |
| GGGCACGCCTAATCCGAAGA+AGG | + | chr1.3:57330857-57330876 | None:intergenic | 60.0% | |
| ! | CCCGAAGTTGGTCGCAGCAT+CGG | - | chr1.3:57330931-57330950 | MS.gene44005:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57330676 | 57331406 | 57330676 | ID=MS.gene44005 |
| chr1.3 | mRNA | 57330676 | 57331406 | 57330676 | ID=MS.gene44005.t1;Parent=MS.gene44005 |
| chr1.3 | exon | 57331104 | 57331406 | 57331104 | ID=MS.gene44005.t1.exon1;Parent=MS.gene44005.t1 |
| chr1.3 | CDS | 57331104 | 57331406 | 57331104 | ID=cds.MS.gene44005.t1;Parent=MS.gene44005.t1 |
| chr1.3 | exon | 57330676 | 57330795 | 57330676 | ID=MS.gene44005.t1.exon2;Parent=MS.gene44005.t1 |
| chr1.3 | CDS | 57330676 | 57330795 | 57330676 | ID=cds.MS.gene44005.t1;Parent=MS.gene44005.t1 |
| Gene Sequence |
| Protein sequence |
