AlfalfaGEDB | MS.gene49979

M. sativa cultivar XinJiangDaYe / MS.gene49979

KEGG: K20115
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0008144 GO:0016740 GO:0016772 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF03618.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49979.t1	XP_013469890.1	94.8	385	17	1	1	385	1	382	1.40E-203	718.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49979.t1	O49562	62.3	361	118	3	39	385	47	403	5.6e-121	435.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49979.t1	A0A072VR94	94.8	385	17	1	1	385	1	382	9.9e-204	718.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene49979	0.838134	3.45E-57	-1.69E-46
MS.gene049171	MS.gene49979	0.845421	4.11E-59	-1.69E-46
MS.gene049222	MS.gene49979	0.84117	5.59E-58	-1.69E-46
MS.gene049257	MS.gene49979	0.808263	3.38E-50	-1.69E-46
MS.gene049356	MS.gene49979	0.800801	1.22E-48	-1.69E-46
MS.gene049396	MS.gene49979	0.805907	1.06E-49	-1.69E-46
MS.gene049488	MS.gene49979	0.833737	4.49E-56	-1.69E-46
MS.gene049609	MS.gene49979	0.878741	2.20E-69	-1.69E-46
MS.gene049633	MS.gene49979	0.853807	1.87E-61	-1.69E-46
MS.gene049805	MS.gene49979	0.836777	7.67E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49979.t1	MTR_1g105545	95.844	385	13	1	1	385	1	382	0.0	758

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49979.t1	AT4G21210	59.950	397	133	8	4	385	18	403	8.88e-161	457
MS.gene49979.t1	AT3G01200	62.466	365	122	6	29	385	20	377	2.65e-148	425
MS.gene49979.t1	AT4G21210	55.668	397	123	9	4	385	18	376	7.17e-141	405

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Find 121 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGGGCTAAAACTTT+GGG	0.383297	1.1:+75507358	MS.gene49979:CDS
AAAACATATGAGTACAAACA+GGG	0.728365	1.1:-75504570	None:intergenic
AAACTGCAGCCGTTGTATTG+AGG	0.546382	1.1:+75507655	MS.gene49979:CDS
AACCCTGTCTGGCCCGTTAT+TGG	0.248173	1.1:+75507466	MS.gene49979:CDS
AACCGGAGGTGGAGAGTTGT+TGG	0.438244	1.1:-75504389	None:intergenic
AAGGCTGATATTGTTCTTAC+CGG	0.326597	1.1:+75507163	MS.gene49979:CDS
AATACGTGCCGGTCGAAAAT+TGG	0.320881	1.1:+75504333	MS.gene49979:CDS
AATAGACAAAGGTGTCTTCC+CGG	0.408718	1.1:-75507197	None:intergenic
AATCCTACGAAAGTAATCAT+CGG	0.619260	1.1:-75507083	None:intergenic
AATGCCTAGGACTCTCTTTC+AGG	0.211691	1.1:+75507276	MS.gene49979:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAAATGGGCCATTG+AGG	+	chr1.1:75505848-75505867	MS.gene49979:intron	30.0%
AAAAACAAGGGCTAAAACTT+TGG	+	chr1.1:75507357-75507376	MS.gene49979:CDS	30.0%
AAAAATTGTGCACAACTTGA+CGG	-	chr1.1:75504745-75504764	None:intergenic	30.0%
AAAACAAGGGCTAAAACTTT+GGG	+	chr1.1:75507358-75507377	MS.gene49979:CDS	30.0%
AATCCTACGAAAGTAATCAT+CGG	-	chr1.1:75507086-75507105	None:intergenic	30.0%
AATTGACCAAAGAGATTGAA+GGG	-	chr1.1:75506051-75506070	None:intergenic	30.0%
ACAGGACATTAGAAAAACAA+GGG	+	chr1.1:75507345-75507364	MS.gene49979:CDS	30.0%
CAAAGTGGATAAAGAATGAA+GGG	-	chr1.1:75504614-75504633	None:intergenic	30.0%
CCAGTCCAAAAATATGAAAA+AGG	-	chr1.1:75505414-75505433	None:intergenic	30.0%
CTCTTTATTAGTTGATCCTT+GGG	-	chr1.1:75506544-75506563	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	75504178	75507734	75504178	ID=MS.gene49979
chr1.1	mRNA	75504178	75507734	75504178	ID=MS.gene49979.t1;Parent=MS.gene49979
chr1.1	exon	75504178	75504597	75504178	ID=MS.gene49979.t1.exon1;Parent=MS.gene49979.t1
chr1.1	CDS	75504178	75504597	75504178	ID=cds.MS.gene49979.t1;Parent=MS.gene49979.t1
chr1.1	exon	75506854	75507487	75506854	ID=MS.gene49979.t1.exon2;Parent=MS.gene49979.t1
chr1.1	CDS	75506854	75507487	75506854	ID=cds.MS.gene49979.t1;Parent=MS.gene49979.t1
chr1.1	exon	75507631	75507734	75507631	ID=MS.gene49979.t1.exon3;Parent=MS.gene49979.t1
chr1.1	CDS	75507631	75507734	75507631	ID=cds.MS.gene49979.t1;Parent=MS.gene49979.t1

Gene Sequence

>MS.gene49979

ATGCCAATTTCACGATTATGTCCAAACACACATCCACTTCTACAAATCAAAGCATGCAACCGCAACAACAACAACAACAACGACACAGGATCGAAGTCAGTTACAGGAAAACCCAAGGTGAGTCCCCAGCTGAACCGGTGGTCCAGGGCTCGTGCAATACGTGCCGGTCGAAAATTGGACCGGTCTAGTCCTCGAACCCAGACCATAGAATCCAACAACTCTCCACCTCCGGTTCCTTTCGCGGTCGACCTGGATGACACCGTCAGTGAAGACGGGTCAGAGTTCAAGGCTAAGTCAATTTATATTGTCTCTGATGGAACCGGTTGGACCGCTGAACACTGTGTTAATGCTGCTTTGGGTCAGTTTGATTATTGCTTGGTTGATCGTGGTTGCCCTGTTTGTACTCATATGTTTTCTGGGGTAACTTTTCTAACCCTTCATTCTTTATCCACTTTGCTTTATACACACCCACACAATGCTGTAACTCGTCCAAATTGTGATATTTATCATAGTAATCTTCATTTTTTGCGGTACATTAACCACACATTTTAGGAACTTATTTGCCCGTCAAGTTGTGCACAATTTTTTTTTTTTTTTAAGTAATAACAATTGTGCATGGACTAGTTAGTAGTAACTTTTGTCCACTCATTGAAATGTTACTATTAAATTAAATTCGTTTAAGAGAGAACTAAATTTTTAGTCGAATTAGTCTTATGATGTAATAGTATGATCATCATGGAGAAATTACATATTGGGTTAATGTGTCATGCCATAGTTTCTAACACTAAAATTATTACTCCCTCCGTCCTGAATTAATTGAGCCCTTGGCTCATTTCACACTTATTAAGAAAAATGAATAAATAAAGGGGAAAGTGAAATATATTGAATTGGAAATGATGAATGTAGTATTAATTAGAGTTATAAAGGGAAAAAAGTGGAATATATTGAATTGGGAATGATGAAAGTAGTATTGAAAATTGAAATGGCTCAGTTATTTTGGGACACTTTTTTTTAGTATATGGCTCAGTTAATCCGGGACGGAGGGAGTACATCTTTCCCTATTTGTAAAACCATGTGGCCAGTGGCGTATCCAGGACCCTGGACCAGGGGGTGTAGACTATTTAACCTTGTTTAGAAAGAAAAAAAAGTTTAATTACAGTTTTATTCCTCATATTTTCACTCATTCACGGAATTATTAATCCTCCTATATATTAAGATCATCCAATTTTTGTCCCTTTTTCATATTTTTGGACTGGGAAATGGTGATGTAACATATTTTAAACGACGTTTCATACAACCCGATGATGTGGAATTATCATCAACAATAAAATTAGTAGAAAGCCTCCAAAAAACTTTAATTCAGATACGATATACGACCATTTTTAAGTTTGAAAATCTGAAAAAGGACCAAAATTGAATGATTTTAATATGAGAGACCAATTTTATAAGTAAATAAAAATATGAGAGAAAAAATGAAATTATAATGAGATCAGTTTGTATACATTATATCGGTACACATTTATGTGTAAAAAAAAATACATTTTTTTTTTGAGGAAAAAAAAATACATATACAATGTACAAATTTAATAATAAATAATAATCATAATGTATAAATATTGTATAACTTCATCATAAGATCAGTTTTTTATGATTTTGAATTAGAACGTCATAAAAAAAAAATGGGCCATTGAGGTTATGTACAAAAGCTCAAATGTTGAGTTATACAAATCCCTAAATCTAGCTGCTGCACATGTTTTACAGGTTGTGGCCGCCATTCCAATTTCTGTTGGCTGCACTTTTCTTATTCTTCTTTTTTCTCTACTTTGCAAATGTATCTCTACTCTCCATTTTCTTCTTCAACACATTTCTTCCCTTCAATCTCTTTGGTCAATTGGGTCAGGGTATGCAAAAGCAAAATCTCAGGGTGTTCAAAATGCAAAAATATAAGATTGTATGTGTGATTTTTTAAAGTTCAGGGTGTGCAGGTGCACACCCTCACATCAACATAGCTCCGCCCCTGCATGTGGCCAATGCATAAGAATTAAGAAAAAATGTTTTTACATTAAATTTGCTAGCAATATACATTCACTTTCTAAAATGTTCTTCAATTATTAAGAGAAATAAATGGTTAGCCTATTAATTTTCTCCATTTAATTAAGGGTATTTTTATGAAAAGATCATTAATGTATTTTGTATTTTGAAATTGATCTTATAAAATGGGACAATTTTTTTTGCAAAGGTGTCTTACATAGATGGATGAAGATAGTAATAGAGAGATTATGTTTATTGACATTTTACGATGCCAGGGACAAAGGTAGTAATAAAGATACTATTATTTTATTTTTTTAAAAGTCGGTATCCGGCCCAAGGATCAACTAATAAAGAGACTATTTTGACTGTCATTTTACAATGCTAGGGACAAATGTAGTAAAATAGACACTATTTTGACCAACATTTTACAAAAATCTGAGGGATGTATTAGCTAATCCGTATGTTGTTAAAAAAATTGCTAATCCGTAAAAATTAGGGACTATTTTGACAAGTATCTACAATTCCGTGGAACAATATTCTTATTCACTCGATAATAGCATATAACATACTATTCAAAACACTAATTTTAATCATCACAATTTTTGTTTTTAATTATTTGTTTATATTTTTGTTGTTGTTGACTAGATTGATGATGTAGAGAGGTTATTGGAGATAATAAAGCAAGCAGTGAAGGAAGATGCATTGGTTGTGTATACTTTAGCCGATTCTTCATTTTCTTCAGCAGCTGAGAAGGCCTGCAAATTATGGGGTGTGCCTTCTACTAATGTACTAGGACCCATTACAGAGGCCATTGCTTCTCATTTGGGTGTGTCTCCTTCTGGCCTTCCTCGTGGTGCTTCGGGCATTCCACTCTCCGATGATTACTTTCGTAGGATTGAAGCTATTGAATTCACTATCAAGCAAGATGATGGGGCATCTCCACAGAATCTTGCCAAGGCTGATATTGTTCTTACCGGGGTTTCCCGAACCGGGAAGACACCTTTGTCTATTTATCTTGCACAGAAAGGATATAAGGTCGCCAACGTACCGATTGTAATGGGTGTGGAAATGCCTAGGACTCTCTTTCAGGTTGATCCAAAGAAGGTTTTTGGCTTGACTATAAATCATGGTGTTTTACAGGACATTAGAAAAACAAGGGCTAAAACTTTGGGATTTAGTTCAGAATCACGAACTAATTATTCGGAGATGGATTATATTCGAGAGGAACTTGAATTTGCAGGAAGGCTCTTTGCTCAAAACCCTGTCTGGCCCGTTATTGGTAACTAGTTTAAACTTTAAATTCTACTCGATTTCACATTTCTATTATTCAAACCATGATTTTGATTAGTTCAAAGGGAGTAGTAAAATATTACATTCAAACTAATGCTGATGGTTTCTAAAATATTTCATTAATATATACAGATGTGACTGCTAAAGCGATAGAAGAAACTGCAGCCGTTGTATTGAGGCTTTTCCACGACCGCAAGCATAAGTACACAATGTCTAGCATCTCAAAACGCTATTAG

Protein sequence

>MS.gene49979.t1

MPISRLCPNTHPLLQIKACNRNNNNNNDTGSKSVTGKPKVSPQLNRWSRARAIRAGRKLDRSSPRTQTIESNNSPPPVPFAVDLDDTVSEDGSEFKAKSIYIVSDGTGWTAEHCVNAALGQFDYCLVDRGCPVCTHMFSGIDDVERLLEIIKQAVKEDALVVYTLADSSFSSAAEKACKLWGVPSTNVLGPITEAIASHLGVSPSGLPRGASGIPLSDDYFRRIEAIEFTIKQDDGASPQNLAKADIVLTGVSRTGKTPLSIYLAQKGYKVANVPIVMGVEMPRTLFQVDPKKVFGLTINHGVLQDIRKTRAKTLGFSSESRTNYSEMDYIREELEFAGRLFAQNPVWPVIDVTAKAIEETAAVVLRLFHDRKHKYTMSSISKRY