AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78121


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78121.t1 MTR_4g055170 93.333 465 24 2 1 458 1 465 0.0 879
MS.gene78121.t1 MTR_3g465980 50.862 464 203 11 6 451 4 460 4.23e-154 445
MS.gene78121.t1 MTR_3g465880 52.700 463 195 11 10 451 8 467 1.56e-153 444
MS.gene78121.t1 MTR_3g465990 49.784 464 208 11 6 451 4 460 3.67e-152 441
MS.gene78121.t1 MTR_3g465910 50.000 460 200 12 10 448 8 458 6.25e-145 425
MS.gene78121.t1 MTR_3g465930 48.922 464 208 11 10 451 8 464 1.71e-144 421
MS.gene78121.t1 MTR_6g053810 46.352 466 225 10 5 450 4 464 1.54e-132 390
MS.gene78121.t1 MTR_3g465950 48.655 446 196 12 10 436 8 439 1.27e-129 383
MS.gene78121.t1 MTR_3g465870 44.017 468 202 11 1 451 1 425 1.32e-115 346
MS.gene78121.t1 MTR_2g015430 33.190 464 255 18 12 448 2 437 1.25e-68 226
MS.gene78121.t1 MTR_3g098980 32.339 436 260 14 18 443 20 430 4.68e-57 195
MS.gene78121.t1 MTR_7g027175 32.166 457 271 15 2 446 7 436 9.59e-57 194
MS.gene78121.t1 MTR_8g096530 30.937 459 283 12 10 458 5 439 5.08e-55 189
MS.gene78121.t1 MTR_1g081660 29.565 460 289 12 1 446 7 445 9.50e-54 186
MS.gene78121.t1 MTR_1g040215 28.833 437 285 9 20 446 17 437 1.37e-50 178
MS.gene78121.t1 MTR_1g053315 29.978 447 277 17 20 445 26 457 1.21e-49 176
MS.gene78121.t1 MTR_7g110610 32.258 403 198 15 7 400 2 338 1.90e-49 173
MS.gene78121.t1 MTR_5g076700 28.507 442 283 12 19 446 17 439 4.51e-49 174
MS.gene78121.t1 MTR_3g071320 29.956 454 279 16 11 449 4 433 1.91e-48 172
MS.gene78121.t1 MTR_1g040175 29.825 399 255 9 7 395 4 387 2.04e-48 172
MS.gene78121.t1 MTR_7g114550 29.517 393 241 11 19 395 17 389 8.80e-45 162
MS.gene78121.t1 MTR_1g040195 27.009 448 282 8 6 446 3 412 1.21e-44 162
MS.gene78121.t1 MTR_7g114520 29.490 451 268 15 19 446 18 441 1.28e-44 162
MS.gene78121.t1 MTR_7g114490 29.771 393 240 11 19 395 17 389 1.94e-43 160
MS.gene78121.t1 MTR_7g114560 29.517 393 241 13 19 395 17 389 2.15e-43 159
MS.gene78121.t1 MTR_7g114470 27.640 445 284 13 19 446 18 441 9.83e-43 157
MS.gene78121.t1 MTR_3g112180 27.332 461 264 17 15 446 15 433 8.55e-42 154
MS.gene78121.t1 MTR_8g075610 28.668 443 270 15 19 443 1 415 2.17e-41 152
MS.gene78121.t1 MTR_1g040320 29.047 451 258 12 6 446 3 401 4.44e-41 152
MS.gene78121.t1 MTR_2g105330 26.829 451 285 16 12 443 3 427 1.16e-40 150
MS.gene78121.t1 MTR_2g064495 26.144 459 278 16 12 443 3 427 1.20e-40 150
MS.gene78121.t1 MTR_4g007540 27.527 465 265 19 12 443 3 428 5.64e-39 146
MS.gene78121.t1 MTR_1g040315 26.222 450 254 12 20 455 17 402 1.07e-36 139
MS.gene78121.t1 MTR_7g084940 27.679 448 289 15 8 442 12 437 1.26e-34 134
MS.gene78121.t1 MTR_4g097090 28.741 421 252 13 7 395 4 408 1.99e-33 131
MS.gene78121.t1 MTR_3g049150 28.607 402 242 15 20 391 10 396 1.75e-32 129
MS.gene78121.t1 MTR_4g127650 28.169 355 235 8 15 357 13 359 1.89e-31 125
MS.gene78121.t1 MTR_7g085930 30.729 384 206 18 10 357 6 365 1.32e-30 123
MS.gene78121.t1 MTR_7g085990 29.243 383 213 17 10 357 2 361 3.10e-29 119
MS.gene78121.t1 MTR_7g056087 26.281 449 279 16 18 441 10 431 4.71e-29 119
MS.gene78121.t1 MTR_3g026950 26.329 414 248 17 20 395 10 404 3.78e-28 116
MS.gene78121.t1 MTR_4g013050 26.058 449 249 16 20 442 12 403 2.27e-26 110
MS.gene78121.t1 MTR_7g084910 26.667 435 258 15 19 434 24 416 4.87e-25 107
MS.gene78121.t1 MTR_7g086000 26.077 418 255 14 20 399 12 413 5.17e-25 107
MS.gene78121.t1 MTR_3g070170 25.503 447 277 15 41 448 37 466 1.08e-24 106
MS.gene78121.t1 MTR_0502s0010 32.057 209 119 5 141 340 44 238 7.55e-23 97.4
MS.gene78121.t1 MTR_2g007880 26.569 478 268 20 10 449 15 447 1.53e-22 100
MS.gene78121.t1 MTR_3g086020 25.383 457 257 20 19 448 12 411 4.92e-22 98.2
MS.gene78121.t1 MTR_5g090810 25.000 400 255 13 69 438 66 450 1.55e-20 94.4
MS.gene78121.t1 MTR_4g094835 27.941 272 175 8 69 326 64 328 6.51e-20 92.4
MS.gene78121.t1 MTR_5g090880 25.485 361 222 11 69 395 67 414 9.88e-20 92.0
MS.gene78121.t1 MTR_5g090830 25.564 399 254 13 69 438 66 450 1.02e-19 91.7
MS.gene78121.t1 MTR_3g450710 26.374 364 214 14 69 395 65 411 1.50e-19 91.3
MS.gene78121.t1 MTR_7g114510 25.949 316 196 12 145 446 8 299 2.62e-19 89.0
MS.gene78121.t1 MTR_4g094842 26.897 290 175 9 59 324 52 328 9.12e-19 89.0
MS.gene78121.t1 MTR_0042s0190 26.496 234 160 6 163 395 1 223 1.01e-18 86.7
MS.gene78121.t1 MTR_3g101900 27.143 280 172 9 69 329 66 332 1.39e-18 88.2
MS.gene78121.t1 MTR_3g101960 26.736 288 163 10 69 329 68 334 2.21e-18 87.8
MS.gene78121.t1 MTR_5g084870 24.307 469 277 17 20 458 11 431 3.79e-18 87.0
MS.gene78121.t1 MTR_3g102020 27.143 280 172 10 69 329 69 335 6.39e-18 86.3
MS.gene78121.t1 MTR_0042s0230 35.821 134 80 2 6 137 3 132 1.51e-17 80.1
MS.gene78121.t1 MTR_7g114500 35.556 135 71 3 19 143 17 145 1.75e-17 79.7
MS.gene78121.t1 MTR_3g450690 25.348 359 221 11 69 395 72 415 1.98e-17 84.7
MS.gene78121.t1 MTR_4g094832 26.493 268 181 6 134 397 127 382 2.47e-17 84.3
MS.gene78121.t1 MTR_3g101930 28.674 279 163 10 69 324 70 335 3.07e-17 84.3
MS.gene78121.t1 MTR_3g088420 25.333 300 195 9 69 349 55 344 2.21e-16 81.3
MS.gene78121.t1 MTR_4g022825 27.036 307 186 10 69 348 55 350 4.48e-16 80.5
MS.gene78121.t1 MTR_4g022720 28.105 306 179 12 69 348 55 345 4.73e-16 80.5
MS.gene78121.t1 MTR_4g094838 23.729 354 212 8 69 397 64 384 4.93e-16 80.5
MS.gene78121.t1 MTR_3g102010 25.704 284 175 9 69 329 65 335 5.77e-16 80.1
MS.gene78121.t1 MTR_7g114960 24.457 368 240 15 10 361 8 353 7.08e-16 80.1
MS.gene78121.t1 MTR_3g051790 34.545 165 72 6 19 153 20 178 7.37e-16 75.9
MS.gene78121.t1 MTR_8g039950 39.604 101 55 2 20 118 17 113 1.94e-15 73.2
MS.gene78121.t1 MTR_3g026310 26.032 315 186 9 69 351 55 354 2.08e-15 78.6
MS.gene78121.t1 MTR_4g022800 26.974 304 191 9 69 348 55 351 2.20e-15 78.6
MS.gene78121.t1 MTR_4g022760 26.829 328 204 11 69 367 55 375 6.63e-15 76.6
MS.gene78121.t1 MTR_8g041770 26.524 328 188 11 49 348 48 350 8.08e-15 76.6
MS.gene78121.t1 MTR_4g022670 26.948 308 186 12 69 348 55 351 4.06e-14 74.3
MS.gene78121.t1 MTR_4g094828 23.607 305 206 8 69 352 59 357 6.50e-14 73.9
MS.gene78121.t1 MTR_0190s0020 26.296 270 175 7 69 324 63 322 1.09e-13 73.2
MS.gene78121.t1 MTR_3g049140 29.609 179 107 7 226 391 21 193 1.66e-13 70.9
MS.gene78121.t1 MTR_8g467590 23.716 409 252 18 13 391 4 382 5.79e-13 70.9
MS.gene78121.t1 MTR_4g022290 24.731 279 177 9 69 326 60 326 1.55e-12 69.7
MS.gene78121.t1 MTR_8g040780 30.303 132 78 3 222 348 16 138 5.85e-11 63.2
MS.gene78121.t1 MTR_7g014200 25.183 409 253 17 69 441 69 460 7.24e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78121.t1 AT5G07080 46.154 455 205 13 10 445 12 445 2.17e-125 372
MS.gene78121.t1 AT2G25150 42.735 468 250 8 1 457 1 461 7.84e-118 353
MS.gene78121.t1 AT2G23510 43.311 441 231 9 19 449 20 451 4.72e-115 345
MS.gene78121.t1 AT3G47170 41.597 476 235 15 1 446 1 463 2.75e-108 329
MS.gene78121.t1 AT1G28680 34.868 456 260 16 11 446 3 441 4.90e-82 260
MS.gene78121.t1 AT1G28680 34.817 382 217 13 11 375 3 369 3.50e-66 218
MS.gene78121.t1 AT5G41040 31.360 456 275 14 7 450 12 441 1.14e-62 210
MS.gene78121.t1 AT5G41040 31.360 456 275 14 7 450 28 457 1.16e-62 210
MS.gene78121.t1 AT3G03480 30.303 462 279 14 2 445 9 445 2.79e-55 191
MS.gene78121.t1 AT3G62160 30.825 412 232 13 8 400 1 378 6.98e-55 189
MS.gene78121.t1 AT5G17540 29.736 454 285 15 7 446 4 437 2.67e-53 186
MS.gene78121.t1 AT5G63560 30.752 452 271 15 7 446 4 425 3.29e-53 184
MS.gene78121.t1 AT3G48720 30.227 440 269 16 19 446 16 429 8.29e-53 183
MS.gene78121.t1 AT1G27620 28.289 456 281 14 18 458 15 439 2.07e-46 167
MS.gene78121.t1 AT1G03390 26.622 447 285 17 19 441 24 451 1.44e-42 157
MS.gene78121.t1 AT2G40230 28.508 449 275 18 12 442 5 425 4.87e-42 154
MS.gene78121.t1 AT5G48930 27.791 421 263 18 10 408 1 402 3.49e-35 135
MS.gene78121.t1 AT1G65450 28.477 453 286 17 10 446 16 446 2.67e-34 134
MS.gene78121.t1 AT5G57840 27.654 405 253 17 10 391 1 388 1.17e-30 123
MS.gene78121.t1 AT2G19070 26.316 456 286 18 20 445 12 447 1.14e-27 115
MS.gene78121.t1 AT4G31910 29.217 332 186 13 69 364 64 382 1.36e-24 106
MS.gene78121.t1 AT4G15390 24.204 471 292 20 6 448 2 435 3.10e-21 96.3
MS.gene78121.t1 AT4G15390 24.204 471 292 20 6 448 2 435 3.10e-21 96.3
MS.gene78121.t1 AT1G31490 25.575 391 250 14 19 391 13 380 9.20e-21 94.7
MS.gene78121.t1 AT1G24430 25.253 396 246 16 69 449 62 422 1.49e-20 94.0
MS.gene78121.t1 AT3G50280 25.840 387 235 16 69 419 59 429 1.53e-20 94.0
MS.gene78121.t1 AT1G78990 26.066 422 283 15 47 456 47 451 1.99e-20 94.0
MS.gene78121.t1 AT1G32910 25.441 397 265 14 66 444 62 445 5.66e-19 89.7
MS.gene78121.t1 AT5G07860 29.119 261 150 10 69 310 72 316 1.58e-18 88.2
MS.gene78121.t1 AT3G30280 23.932 468 282 18 19 454 13 438 3.45e-18 87.0
MS.gene78121.t1 AT5G67150 23.704 405 263 13 69 449 61 443 4.86e-16 80.5
MS.gene78121.t1 AT5G07870 27.778 270 150 11 69 309 72 325 1.33e-15 79.3
MS.gene78121.t1 AT5G67160 28.205 273 167 11 69 324 56 316 1.44e-15 79.0
MS.gene78121.t1 AT5G16410 23.410 393 267 12 69 444 91 466 2.73e-15 78.2
MS.gene78121.t1 AT3G50280 26.384 307 189 12 135 419 8 299 9.49e-15 75.5
MS.gene78121.t1 AT5G07850 27.925 265 159 9 69 314 70 321 1.45e-14 75.9
MS.gene78121.t1 AT5G42830 25.517 290 180 11 69 335 64 340 6.66e-14 73.9
MS.gene78121.t1 AT5G23940 24.601 313 209 10 20 310 11 318 9.71e-14 73.6
MS.gene78121.t1 AT3G50270 24.860 358 233 15 69 403 62 406 1.80e-13 72.8
MS.gene78121.t1 AT5G01210 26.950 282 168 9 83 329 76 354 2.53e-13 72.4
MS.gene78121.t1 AT5G47950 30.055 183 104 9 19 190 13 182 1.18e-11 67.0
MS.gene78121.t1 AT3G29670 26.316 266 167 9 69 313 66 323 3.43e-11 65.5
MS.gene78121.t1 AT3G50300 24.762 315 203 12 69 364 59 358 4.29e-11 65.1
MS.gene78121.t1 AT3G29680 24.437 311 207 11 144 441 144 439 7.89e-11 64.3

Find 92 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCAATGGCTAAGTTTA+AGG 0.175686 4.4:+47827979 MS.gene78121:CDS
CCTTTGCATGAAGGTTATTA+TGG 0.209215 4.4:+47827578 MS.gene78121:CDS
ATTACACAAGCAGGGTCTTT+TGG 0.247753 4.4:-47826858 None:intergenic
AACTTAGCCATTGAAGCTTT+TGG 0.251306 4.4:-47827974 None:intergenic
GGCTTCAAATGTGGTCTTAA+AGG 0.260325 4.4:+47827613 MS.gene78121:CDS
CTTTGTGGTGGTTTCACAAT+TGG 0.270838 4.4:+47827119 MS.gene78121:CDS
TAATGAGGAAAGGGAATATA+AGG 0.273542 4.4:+47827747 MS.gene78121:CDS
GTATACTATTATCCTCTTGC+AGG 0.282976 4.4:+47826906 MS.gene78121:CDS
TTGTTGCAAGAAGTTGATTT+TGG 0.295712 4.4:+47827821 MS.gene78121:CDS
CATCAACTTTCATGACCTTA+AGG 0.315561 4.4:-47828015 None:intergenic
TGATAACCCTTCTCATCCTT+TGG 0.316838 4.4:+47827076 MS.gene78121:CDS
AACCATCTTTGAAACCTGTT+TGG 0.324638 4.4:+47827228 MS.gene78121:CDS
TAAACGGTGAAATTATAAAA+AGG 0.331543 4.4:+47827378 MS.gene78121:CDS
AAACACTCGGTGCATATGTT+TGG 0.353386 4.4:+47827468 MS.gene78121:CDS
CCTGTTCCTTGGAACATGTT+TGG 0.361072 4.4:+47827869 MS.gene78121:CDS
TCATGTGAAATTTCTTTAGT+TGG 0.361629 4.4:-47827344 None:intergenic
TCATTTGGGAAATCAAGATT+TGG 0.367023 4.4:-47826834 None:intergenic
CATAGTGTTTGTGATGGTTA+TGG 0.389402 4.4:+47827155 MS.gene78121:CDS
CTTCAATGAAAGGAGGAGTT+AGG 0.389486 4.4:+47827936 MS.gene78121:CDS
TTAGCATTTGATTCCATGAA+TGG 0.395349 4.4:-47826987 None:intergenic
AATTTCAGAAGGTGTGGGCT+TGG 0.400306 4.4:-47826742 None:intergenic
ACCATCTTTGAAACCTGTTT+GGG 0.404194 4.4:+47827229 MS.gene78121:CDS
TGGCAGAGAATGTTGATGTT+AGG 0.405640 4.4:-47826792 None:intergenic
GCTTTGAAATTGAACAATGA+TGG 0.405825 4.4:+47827506 MS.gene78121:CDS
TCTTCCCTTCATTATCTTGA+AGG 0.406389 4.4:+47827020 MS.gene78121:CDS
GTTTGTAGACATAAATTGTT+TGG 0.413551 4.4:-47826812 None:intergenic
ATTGAAGAATCCAACTTACT+TGG 0.421620 4.4:-47827920 None:intergenic
GGAGGAGATGGAATTCCTTA+AGG 0.425685 4.4:+47828000 MS.gene78121:CDS
TTATTATGGCAATGCATTTG+TGG 0.436342 4.4:+47827592 MS.gene78121:CDS
CTTCCCTTCATTATCTTGAA+GGG 0.438956 4.4:+47827021 MS.gene78121:CDS
GTCACTTCCAAAAGCTTCAA+TGG 0.442559 4.4:+47827967 MS.gene78121:CDS
CATCATTGGTGTTAACTGAT+TGG 0.443121 4.4:+47827786 MS.gene78121:CDS
AGAAGCACTCTCAAAAGCTT+TGG 0.444830 4.4:+47826884 MS.gene78121:CDS
TGTTGGAGATAATGAGGAAA+GGG 0.449792 4.4:+47827738 MS.gene78121:CDS
TGAAGGAACTGGTGCATCAT+TGG 0.453829 4.4:+47827772 MS.gene78121:CDS
CCAAACATGTTCCAAGGAAC+AGG 0.453944 4.4:-47827869 None:intergenic
ACACTTGATGATGGAAAGCT+TGG 0.463753 4.4:+47826939 MS.gene78121:CDS
TCCCAAACAGGTTTCAAAGA+TGG 0.465468 4.4:-47827230 None:intergenic
TGTCCTTGGTATCAAGACTA+AGG 0.469953 4.4:-47826701 None:intergenic
TTCAGAAGGTGTGGGCTTGG+AGG 0.471820 4.4:-47826739 None:intergenic
TGAATATTGTGCCTGTTCCT+TGG 0.474624 4.4:+47827858 MS.gene78121:CDS
AGTTGGGGTGAGAAAACTAT+TGG 0.476715 4.4:+47827550 MS.gene78121:CDS
TGGCGACGGAGTTCCATTCA+TGG 0.479811 4.4:+47826974 MS.gene78121:CDS
TCAGAAGGTGTGGGCTTGGA+GGG 0.480591 4.4:-47826738 None:intergenic
GGCTAAGTTTAAGGAGGAGA+TGG 0.481711 4.4:+47827988 MS.gene78121:CDS
CTTTGAAATTGAACAATGAT+GGG 0.484994 4.4:+47827507 MS.gene78121:CDS
GTTATTATCTTTCCTGCAAG+AGG 0.487078 4.4:-47826918 None:intergenic
TTTAACAATCACAATGTCCT+TGG 0.490781 4.4:-47826715 None:intergenic
AAAGGGAATATAAGGGTTGA+AGG 0.493013 4.4:+47827755 MS.gene78121:CDS
GAAGAATCCAACTTACTTGG+AGG 0.494568 4.4:-47827917 None:intergenic
AATATAAGGGTTGAAGGAAC+TGG 0.495175 4.4:+47827761 MS.gene78121:CDS
CAATCCCTTCAAGATAATGA+AGG 0.502121 4.4:-47827025 None:intergenic
TTGGATCCACCTTTGCATGA+AGG 0.506278 4.4:+47827569 MS.gene78121:CDS
TGGTATCAAGACTAAGGGAC+AGG 0.508284 4.4:-47826695 None:intergenic
TTATCTATGAGAAATTGAAA+TGG 0.516169 4.4:-47827293 None:intergenic
AAGATAATAACACTTGATGA+TGG 0.516590 4.4:+47826930 MS.gene78121:CDS
TTAACTGATTGGAGACAACT+TGG 0.516863 4.4:+47827797 MS.gene78121:CDS
TGGTGGTTTCACAATTGGAA+TGG 0.517210 4.4:+47827124 MS.gene78121:CDS
GGTGGTTTCACAATTGGAAT+GGG 0.521542 4.4:+47827125 MS.gene78121:CDS
GCTTCTTTGATTACACAAGC+AGG 0.523958 4.4:-47826867 None:intergenic
TTAACATGTTGGAGATAATG+AGG 0.531085 4.4:+47827732 MS.gene78121:CDS
GTGACAAAGTTTCTTTGTGG+TGG 0.534259 4.4:+47827107 MS.gene78121:CDS
GATGTTAGGATCATTGTCAA+TGG 0.543218 4.4:-47826778 None:intergenic
TGAAAGAATTTCAGAAGGTG+TGG 0.544259 4.4:-47826748 None:intergenic
AATGAGGAAAGGGAATATAA+GGG 0.546323 4.4:+47827748 MS.gene78121:CDS
TTTATATATTCATTATTCAA+AGG 0.553206 4.4:-47827701 None:intergenic
GCTCAAAATGAAACTAATGA+AGG 0.557505 4.4:+47827400 MS.gene78121:CDS
TGATGATGACAATGTGATGA+AGG 0.559889 4.4:+47827427 MS.gene78121:CDS
CCATAATAACCTTCATGCAA+AGG 0.562738 4.4:-47827578 None:intergenic
CACTCGGTGCATATGTTTGG+AGG 0.563831 4.4:+47827471 MS.gene78121:CDS
CTTCTTTGATTACACAAGCA+GGG 0.565435 4.4:-47826866 None:intergenic
TGCATTTGTGGCTTCAAATG+TGG 0.568905 4.4:+47827604 MS.gene78121:CDS
AAGTTGGATTCTTCAATGAA+AGG 0.570860 4.4:+47827926 MS.gene78121:CDS
AAGGTGACAAAGTTTCTTTG+TGG 0.576847 4.4:+47827104 MS.gene78121:CDS
GAAAGAATTTCAGAAGGTGT+GGG 0.577947 4.4:-47826747 None:intergenic
GTCCTTGGTATCAAGACTAA+GGG 0.578066 4.4:-47826700 None:intergenic
GGAATCAACTGCAATGGCGA+CGG 0.579539 4.4:+47826960 MS.gene78121:CDS
GCACTTGCTGAACTTGCAAG+TGG 0.593556 4.4:+47827197 MS.gene78121:CDS
ATGTTGGAGATAATGAGGAA+AGG 0.596819 4.4:+47827737 MS.gene78121:CDS
AAGCTTGGAATCAACTGCAA+TGG 0.597334 4.4:+47826954 MS.gene78121:CDS
AATCCCTTCAAGATAATGAA+GGG 0.597371 4.4:-47827024 None:intergenic
TTCAATGGCTAAGTTTAAGG+AGG 0.601083 4.4:+47827982 MS.gene78121:CDS
TTGTCACATAGTGTTTGTGA+TGG 0.601711 4.4:+47827149 MS.gene78121:CDS
TTCACAACACTTGAAACACT+CGG 0.603198 4.4:+47827455 MS.gene78121:CDS
TAATAACCTTCATGCAAAGG+TGG 0.605526 4.4:-47827575 None:intergenic
ACAAAACCAAACATGTTCCA+AGG 0.607274 4.4:-47827875 None:intergenic
GTCCCTTAGTCTTGATACCA+AGG 0.611096 4.4:+47826698 MS.gene78121:CDS
TGCATATGTTTGGAGGTCAA+AGG 0.611126 4.4:+47827478 MS.gene78121:CDS
GTTAGGATCATTGTCAATGG+TGG 0.626574 4.4:-47826775 None:intergenic
TTGGATTCTTCAATGAAAGG+AGG 0.629656 4.4:+47827929 MS.gene78121:CDS
GAAAGTGAAAGAATTTCAGA+AGG 0.631868 4.4:-47826753 None:intergenic
GGTATCAAGACTAAGGGACA+GGG 0.686582 4.4:-47826694 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATTCATTATTCAA+AGG - chr4.4:47827704-47827723 None:intergenic 10.0%
!! AAAAAATTCAATTAACATGT+TGG + chr4.4:47827721-47827740 MS.gene78121:CDS 15.0%
!! TAAACGGTGAAATTATAAAA+AGG + chr4.4:47827378-47827397 MS.gene78121:CDS 20.0%
!! TTATCTATGAGAAATTGAAA+TGG - chr4.4:47827296-47827315 None:intergenic 20.0%
!!! ATTTCTTTAGTTGGTAAAAA+AGG - chr4.4:47827338-47827357 None:intergenic 20.0%
!!! CATGAATGTTTTAACTTAAA+CGG + chr4.4:47827362-47827381 MS.gene78121:CDS 20.0%
! AAGATAATAACACTTGATGA+TGG + chr4.4:47826930-47826949 MS.gene78121:CDS 25.0%
! GTTTGTAGACATAAATTGTT+TGG - chr4.4:47826815-47826834 None:intergenic 25.0%
! TCATGTGAAATTTCTTTAGT+TGG - chr4.4:47827347-47827366 None:intergenic 25.0%
!!! CTTTGAAATTGAACAATGAT+GGG + chr4.4:47827507-47827526 MS.gene78121:CDS 25.0%
AAGTTGGATTCTTCAATGAA+AGG + chr4.4:47827926-47827945 MS.gene78121:CDS 30.0%
AATCCCTTCAAGATAATGAA+GGG - chr4.4:47827027-47827046 None:intergenic 30.0%
AATGAGGAAAGGGAATATAA+GGG + chr4.4:47827748-47827767 MS.gene78121:CDS 30.0%
AGCTTAACAACTTCAAAAAG+TGG - chr4.4:47827659-47827678 None:intergenic 30.0%
ATTGAAGAATCCAACTTACT+TGG - chr4.4:47827923-47827942 None:intergenic 30.0%
GAAAGTGAAAGAATTTCAGA+AGG - chr4.4:47826756-47826775 None:intergenic 30.0%
GCTCAAAATGAAACTAATGA+AGG + chr4.4:47827400-47827419 MS.gene78121:CDS 30.0%
TAAAAACCAAAGGATGAGAA+GGG - chr4.4:47827085-47827104 None:intergenic 30.0%
TAATGAGGAAAGGGAATATA+AGG + chr4.4:47827747-47827766 MS.gene78121:CDS 30.0%
TCATTTGGGAAATCAAGATT+TGG - chr4.4:47826837-47826856 None:intergenic 30.0%
TTAAAAACCAAAGGATGAGA+AGG - chr4.4:47827086-47827105 None:intergenic 30.0%
TTAACATGTTGGAGATAATG+AGG + chr4.4:47827732-47827751 MS.gene78121:CDS 30.0%
TTAGCATTTGATTCCATGAA+TGG - chr4.4:47826990-47827009 None:intergenic 30.0%
TTATTATGGCAATGCATTTG+TGG + chr4.4:47827592-47827611 MS.gene78121:CDS 30.0%
TTTAACAATCACAATGTCCT+TGG - chr4.4:47826718-47826737 None:intergenic 30.0%
TTTGTCACCTTAAAAACCAA+AGG - chr4.4:47827095-47827114 None:intergenic 30.0%
!! GCTTTGAAATTGAACAATGA+TGG + chr4.4:47827506-47827525 MS.gene78121:CDS 30.0%
!! TTGTTGCAAGAAGTTGATTT+TGG + chr4.4:47827821-47827840 MS.gene78121:CDS 30.0%
!!! ACTATGTTTTGTTTAGCAGT+TGG + chr4.4:47827533-47827552 MS.gene78121:CDS 30.0%
!!! CTATGTTTTGTTTAGCAGTT+GGG + chr4.4:47827534-47827553 MS.gene78121:CDS 30.0%
!!! TATGTTTTGTTTAGCAGTTG+GGG + chr4.4:47827535-47827554 MS.gene78121:CDS 30.0%
!!! TTCTCATCCTTTGGTTTTTA+AGG + chr4.4:47827085-47827104 MS.gene78121:CDS 30.0%
AAAGGGAATATAAGGGTTGA+AGG + chr4.4:47827755-47827774 MS.gene78121:CDS 35.0%
AAGGTGACAAAGTTTCTTTG+TGG + chr4.4:47827104-47827123 MS.gene78121:CDS 35.0%
AATATAAGGGTTGAAGGAAC+TGG + chr4.4:47827761-47827780 MS.gene78121:CDS 35.0%
ACAAAACCAAACATGTTCCA+AGG - chr4.4:47827878-47827897 None:intergenic 35.0%
ACTTACTTGGAGGCAAAAAA+AGG - chr4.4:47827910-47827929 None:intergenic 35.0%
AGCTTCAATGGCTAAGTTTA+AGG + chr4.4:47827979-47827998 MS.gene78121:CDS 35.0%
ATGTTGGAGATAATGAGGAA+AGG + chr4.4:47827737-47827756 MS.gene78121:CDS 35.0%
CAATCCCTTCAAGATAATGA+AGG - chr4.4:47827028-47827047 None:intergenic 35.0%
CATAGTGTTTGTGATGGTTA+TGG + chr4.4:47827155-47827174 MS.gene78121:CDS 35.0%
CATCAACTTTCATGACCTTA+AGG - chr4.4:47828018-47828037 None:intergenic 35.0%
CCATAATAACCTTCATGCAA+AGG - chr4.4:47827581-47827600 None:intergenic 35.0%
CCTTTGCATGAAGGTTATTA+TGG + chr4.4:47827578-47827597 MS.gene78121:CDS 35.0%
CTTCCCTTCATTATCTTGAA+GGG + chr4.4:47827021-47827040 MS.gene78121:CDS 35.0%
CTTCTTTGATTACACAAGCA+GGG - chr4.4:47826869-47826888 None:intergenic 35.0%
GATGTTAGGATCATTGTCAA+TGG - chr4.4:47826781-47826800 None:intergenic 35.0%
GTATACTATTATCCTCTTGC+AGG + chr4.4:47826906-47826925 MS.gene78121:CDS 35.0%
GTTATTATCTTTCCTGCAAG+AGG - chr4.4:47826921-47826940 None:intergenic 35.0%
TAATAACCTTCATGCAAAGG+TGG - chr4.4:47827578-47827597 None:intergenic 35.0%
TCTTCCCTTCATTATCTTGA+AGG + chr4.4:47827020-47827039 MS.gene78121:CDS 35.0%
TGAAAGAATTTCAGAAGGTG+TGG - chr4.4:47826751-47826770 None:intergenic 35.0%
TGTTCCAACAGCACAAAAAT+TGG + chr4.4:47827049-47827068 MS.gene78121:CDS 35.0%
TGTTGGAGATAATGAGGAAA+GGG + chr4.4:47827738-47827757 MS.gene78121:CDS 35.0%
TTAACTGATTGGAGACAACT+TGG + chr4.4:47827797-47827816 MS.gene78121:CDS 35.0%
TTCAATGGCTAAGTTTAAGG+AGG + chr4.4:47827982-47828001 MS.gene78121:CDS 35.0%
TTCACAACACTTGAAACACT+CGG + chr4.4:47827455-47827474 MS.gene78121:CDS 35.0%
TTGGATTCTTCAATGAAAGG+AGG + chr4.4:47827929-47827948 MS.gene78121:CDS 35.0%
TTGTCACATAGTGTTTGTGA+TGG + chr4.4:47827149-47827168 MS.gene78121:CDS 35.0%
! AACACCAATTTTTGTGCTGT+TGG - chr4.4:47827056-47827075 None:intergenic 35.0%
! AACTTAGCCATTGAAGCTTT+TGG - chr4.4:47827977-47827996 None:intergenic 35.0%
! GAAAGAATTTCAGAAGGTGT+GGG - chr4.4:47826750-47826769 None:intergenic 35.0%
! TGATGATGACAATGTGATGA+AGG + chr4.4:47827427-47827446 MS.gene78121:CDS 35.0%
!! AACCATCTTTGAAACCTGTT+TGG + chr4.4:47827228-47827247 MS.gene78121:CDS 35.0%
!! ACCATCTTTGAAACCTGTTT+GGG + chr4.4:47827229-47827248 MS.gene78121:CDS 35.0%
!! AGAAGTTGATTTTGGATGGA+AGG + chr4.4:47827829-47827848 MS.gene78121:CDS 35.0%
!! CATCATTGGTGTTAACTGAT+TGG + chr4.4:47827786-47827805 MS.gene78121:CDS 35.0%
!! TGCAAGAAGTTGATTTTGGA+TGG + chr4.4:47827825-47827844 MS.gene78121:CDS 35.0%
!!! TTTTTTGCCTCCAAGTAAGT+TGG + chr4.4:47827910-47827929 MS.gene78121:CDS 35.0%
AAGCTTGGAATCAACTGCAA+TGG + chr4.4:47826954-47826973 MS.gene78121:CDS 40.0%
AGTTGGGGTGAGAAAACTAT+TGG + chr4.4:47827550-47827569 MS.gene78121:CDS 40.0%
CTTCAATGAAAGGAGGAGTT+AGG + chr4.4:47827936-47827955 MS.gene78121:CDS 40.0%
CTTTGTGGTGGTTTCACAAT+TGG + chr4.4:47827119-47827138 MS.gene78121:CDS 40.0%
GAAGAATCCAACTTACTTGG+AGG - chr4.4:47827920-47827939 None:intergenic 40.0%
GCTTCTTTGATTACACAAGC+AGG - chr4.4:47826870-47826889 None:intergenic 40.0%
GGTGGTTTCACAATTGGAAT+GGG + chr4.4:47827125-47827144 MS.gene78121:CDS 40.0%
GTCACTTCCAAAAGCTTCAA+TGG + chr4.4:47827967-47827986 MS.gene78121:CDS 40.0%
GTCCTTGGTATCAAGACTAA+GGG - chr4.4:47826703-47826722 None:intergenic 40.0%
GTGACAAAGTTTCTTTGTGG+TGG + chr4.4:47827107-47827126 MS.gene78121:CDS 40.0%
GTTAGGATCATTGTCAATGG+TGG - chr4.4:47826778-47826797 None:intergenic 40.0%
TCCCAAACAGGTTTCAAAGA+TGG - chr4.4:47827233-47827252 None:intergenic 40.0%
TGAATATTGTGCCTGTTCCT+TGG + chr4.4:47827858-47827877 MS.gene78121:CDS 40.0%
TGATAACCCTTCTCATCCTT+TGG + chr4.4:47827076-47827095 MS.gene78121:CDS 40.0%
TGCATATGTTTGGAGGTCAA+AGG + chr4.4:47827478-47827497 MS.gene78121:CDS 40.0%
TGCATTTGTGGCTTCAAATG+TGG + chr4.4:47827604-47827623 MS.gene78121:CDS 40.0%
TGGCAGAGAATGTTGATGTT+AGG - chr4.4:47826795-47826814 None:intergenic 40.0%
TGGTGGTTTCACAATTGGAA+TGG + chr4.4:47827124-47827143 MS.gene78121:CDS 40.0%
TGTCCTTGGTATCAAGACTA+AGG - chr4.4:47826704-47826723 None:intergenic 40.0%
! ATTACACAAGCAGGGTCTTT+TGG - chr4.4:47826861-47826880 None:intergenic 40.0%
! GGCTTCAAATGTGGTCTTAA+AGG + chr4.4:47827613-47827632 MS.gene78121:CDS 40.0%
! TTACACAAGCAGGGTCTTTT+GGG - chr4.4:47826860-47826879 None:intergenic 40.0%
!! AAACACTCGGTGCATATGTT+TGG + chr4.4:47827468-47827487 MS.gene78121:CDS 40.0%
!! ACACTTGATGATGGAAAGCT+TGG + chr4.4:47826939-47826958 MS.gene78121:CDS 40.0%
!! AGAAGCACTCTCAAAAGCTT+TGG + chr4.4:47826884-47826903 MS.gene78121:CDS 40.0%
AATCTCTCTCTCTCCCAAAC+AGG - chr4.4:47827245-47827264 None:intergenic 45.0%
CCAAACATGTTCCAAGGAAC+AGG - chr4.4:47827872-47827891 None:intergenic 45.0%
CCTGTTCCTTGGAACATGTT+TGG + chr4.4:47827869-47827888 MS.gene78121:CDS 45.0%
GGAGGAGATGGAATTCCTTA+AGG + chr4.4:47828000-47828019 MS.gene78121:CDS 45.0%
GGCTAAGTTTAAGGAGGAGA+TGG + chr4.4:47827988-47828007 MS.gene78121:CDS 45.0%
GGTATCAAGACTAAGGGACA+GGG - chr4.4:47826697-47826716 None:intergenic 45.0%
TGAAGGAACTGGTGCATCAT+TGG + chr4.4:47827772-47827791 MS.gene78121:CDS 45.0%
TGGTATCAAGACTAAGGGAC+AGG - chr4.4:47826698-47826717 None:intergenic 45.0%
TTGGATCCACCTTTGCATGA+AGG + chr4.4:47827569-47827588 MS.gene78121:CDS 45.0%
! AATTTCAGAAGGTGTGGGCT+TGG - chr4.4:47826745-47826764 None:intergenic 45.0%
!! CAGGGTCTTTTGGGTCATTT+GGG - chr4.4:47826851-47826870 None:intergenic 45.0%
!! GTCCCTTAGTCTTGATACCA+AGG + chr4.4:47826698-47826717 MS.gene78121:CDS 45.0%
GGAATCAACTGCAATGGCGA+CGG + chr4.4:47826960-47826979 MS.gene78121:CDS 50.0%
! GCACTTGCTGAACTTGCAAG+TGG + chr4.4:47827197-47827216 MS.gene78121:CDS 50.0%
!! CACTCGGTGCATATGTTTGG+AGG + chr4.4:47827471-47827490 MS.gene78121:CDS 50.0%
!! GCAGGGTCTTTTGGGTCATT+TGG - chr4.4:47826852-47826871 None:intergenic 50.0%
TGGCGACGGAGTTCCATTCA+TGG + chr4.4:47826974-47826993 MS.gene78121:CDS 55.0%
! TCAGAAGGTGTGGGCTTGGA+GGG - chr4.4:47826741-47826760 None:intergenic 55.0%
! TTCAGAAGGTGTGGGCTTGG+AGG - chr4.4:47826742-47826761 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 47826675 47828051 47826675 ID=MS.gene78121
chr4.4 mRNA 47826675 47828051 47826675 ID=MS.gene78121.t1;Parent=MS.gene78121
chr4.4 exon 47826675 47828051 47826675 ID=MS.gene78121.t1.exon1;Parent=MS.gene78121.t1
chr4.4 CDS 47826675 47828051 47826675 ID=cds.MS.gene78121.t1;Parent=MS.gene78121.t1
Gene Sequence

>MS.gene78121

ATGGAAAATTACAAGAAATCCCTGTCCCTTAGTCTTGATACCAAGGACATTGTGATTGTTAAACCCTCCAAGCCCACACCTTCTGAAATTCTTTCACTTTCCACCATTGACAATGATCCTAACATCAACATTCTCTGCCAAACAATTTATGTCTACAAACCAAATCTTGATTTCCCAAATGACCCAAAAGACCCTGCTTGTGTAATCAAAGAAGCACTCTCAAAAGCTTTGGTATACTATTATCCTCTTGCAGGAAAGATAATAACACTTGATGATGGAAAGCTTGGAATCAACTGCAATGGCGACGGAGTTCCATTCATGGAATCAAATGCTAATTGTGAACTCTCTTCCCTTCATTATCTTGAAGGGATTGATGTTCCAACAGCACAAAAATTGGTGTTTGATAACCCTTCTCATCCTTTGGTTTTTAAGGTGACAAAGTTTCTTTGTGGTGGTTTCACAATTGGAATGGGATTGTCACATAGTGTTTGTGATGGTTATGGTGCATCTCAATTCTATAGAGCACTTGCTGAACTTGCAAGTGGAAAAAATGAACCATCTTTGAAACCTGTTTGGGAGAGAGAGAGATTAACAGTGAAAAGTACTCTTAAAGAACAACCATTTCAATTTCTCATAGATAAGACTTCAATAGCAACTTCACCTTTTTTACCAACTAAAGAAATTTCACATGAATGTTTTAACTTAAACGGTGAAATTATAAAAAGGCTCAAAATGAAACTAATGAAGGAAAGTGATGATGACAATGTGATGAAGGAAAATTTCACAACACTTGAAACACTCGGTGCATATGTTTGGAGGTCAAAGGCAAAAGCTTTGAAATTGAACAATGATGGGAAAACTATGTTTTGTTTAGCAGTTGGGGTGAGAAAACTATTGGATCCACCTTTGCATGAAGGTTATTATGGCAATGCATTTGTGGCTTCAAATGTGGTCTTAAAGGTGAAAGAGCTTAATGAAAAACCACTTTTTGAAGTTGTTAAGCTTATCAAAGAGAGTAAAAAGCTTCCTTTGAATAATGAATATATAAAAAATTCAATTAACATGTTGGAGATAATGAGGAAAGGGAATATAAGGGTTGAAGGAACTGGTGCATCATTGGTGTTAACTGATTGGAGACAACTTGGTTTGTTGCAAGAAGTTGATTTTGGATGGAAGGATTCAGTGAATATTGTGCCTGTTCCTTGGAACATGTTTGGTTTTGTAGATTTGTGCCTTTTTTTGCCTCCAAGTAAGTTGGATTCTTCAATGAAAGGAGGAGTTAGGATCTTTGTGTCACTTCCAAAAGCTTCAATGGCTAAGTTTAAGGAGGAGATGGAATTCCTTAAGGTCATGAAAGTTGATGAAGATAACTCCTAG

Protein sequence

>MS.gene78121.t1

MENYKKSLSLSLDTKDIVIVKPSKPTPSEILSLSTIDNDPNINILCQTIYVYKPNLDFPNDPKDPACVIKEALSKALVYYYPLAGKIITLDDGKLGINCNGDGVPFMESNANCELSSLHYLEGIDVPTAQKLVFDNPSHPLVFKVTKFLCGGFTIGMGLSHSVCDGYGASQFYRALAELASGKNEPSLKPVWERERLTVKSTLKEQPFQFLIDKTSIATSPFLPTKEISHECFNLNGEIIKRLKMKLMKESDDDNVMKENFTTLETLGAYVWRSKAKALKLNNDGKTMFCLAVGVRKLLDPPLHEGYYGNAFVASNVVLKVKELNEKPLFEVVKLIKESKKLPLNNEYIKNSINMLEIMRKGNIRVEGTGASLVLTDWRQLGLLQEVDFGWKDSVNIVPVPWNMFGFVDLCLFLPPSKLDSSMKGGVRIFVSLPKASMAKFKEEMEFLKVMKVDEDNS