AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89988


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89988.t1 MTR_4g055170 94.624 465 24 1 1 464 1 465 0.0 899
MS.gene89988.t1 MTR_3g465880 52.903 465 197 12 10 457 8 467 3.45e-154 446
MS.gene89988.t1 MTR_3g465980 50.427 468 205 11 6 457 4 460 6.88e-154 445
MS.gene89988.t1 MTR_3g465990 50.214 468 206 13 6 457 4 460 1.67e-152 442
MS.gene89988.t1 MTR_3g465910 50.216 462 202 13 10 454 8 458 1.62e-145 426
MS.gene89988.t1 MTR_3g465930 49.142 466 210 12 10 457 8 464 3.55e-145 423
MS.gene89988.t1 MTR_6g053810 46.467 467 229 10 5 456 4 464 2.87e-133 393
MS.gene89988.t1 MTR_3g465950 48.770 447 200 12 10 442 8 439 4.19e-130 384
MS.gene89988.t1 MTR_3g465870 44.136 469 206 11 1 457 1 425 3.28e-116 348
MS.gene89988.t1 MTR_2g015430 33.333 465 259 18 12 454 2 437 6.51e-70 229
MS.gene89988.t1 MTR_3g098980 32.339 436 266 13 18 449 20 430 2.67e-58 198
MS.gene89988.t1 MTR_7g027175 32.166 457 277 15 2 452 7 436 8.19e-57 194
MS.gene89988.t1 MTR_8g096530 30.937 459 289 12 10 464 5 439 6.85e-55 189
MS.gene89988.t1 MTR_1g081660 29.783 460 294 12 1 452 7 445 8.26e-55 189
MS.gene89988.t1 MTR_5g076700 28.507 442 289 11 19 452 17 439 3.32e-51 180
MS.gene89988.t1 MTR_1g040215 29.062 437 290 9 20 452 17 437 3.39e-51 180
MS.gene89988.t1 MTR_1g053315 30.201 447 282 17 20 451 26 457 8.33e-51 179
MS.gene89988.t1 MTR_1g040175 30.326 399 259 9 7 401 4 387 1.06e-49 176
MS.gene89988.t1 MTR_7g110610 31.514 403 207 13 7 406 2 338 2.59e-49 173
MS.gene89988.t1 MTR_3g071320 30.110 455 283 16 11 455 4 433 3.56e-49 174
MS.gene89988.t1 MTR_7g114520 29.712 451 273 14 19 452 18 441 5.06e-47 169
MS.gene89988.t1 MTR_7g114550 30.025 393 245 11 19 401 17 389 8.49e-47 168
MS.gene89988.t1 MTR_7g114560 29.771 393 246 12 19 401 17 389 2.32e-46 167
MS.gene89988.t1 MTR_1g040195 27.232 448 287 8 6 452 3 412 9.91e-46 165
MS.gene89988.t1 MTR_7g114470 27.865 445 289 13 19 452 18 441 2.02e-44 162
MS.gene89988.t1 MTR_7g114490 29.771 393 246 11 19 401 17 389 2.26e-44 162
MS.gene89988.t1 MTR_3g112180 27.669 459 267 16 17 452 17 433 2.71e-43 159
MS.gene89988.t1 MTR_1g040320 29.490 451 262 12 6 452 3 401 1.39e-42 156
MS.gene89988.t1 MTR_2g105330 27.212 452 288 17 12 449 3 427 1.57e-41 153
MS.gene89988.t1 MTR_2g064495 26.770 452 290 16 12 449 3 427 3.66e-41 152
MS.gene89988.t1 MTR_8g075610 29.148 446 270 17 19 449 1 415 7.53e-41 151
MS.gene89988.t1 MTR_4g007540 27.948 458 278 19 12 449 3 428 2.11e-39 147
MS.gene89988.t1 MTR_1g040315 26.667 450 258 12 20 461 17 402 8.43e-38 143
MS.gene89988.t1 MTR_4g097090 29.454 421 255 13 7 401 4 408 6.72e-36 138
MS.gene89988.t1 MTR_7g084940 27.716 451 291 16 8 448 12 437 2.33e-35 136
MS.gene89988.t1 MTR_4g127650 29.577 355 236 8 15 363 13 359 9.09e-34 132
MS.gene89988.t1 MTR_3g049150 29.383 405 241 16 20 397 10 396 7.84e-33 130
MS.gene89988.t1 MTR_7g085930 30.491 387 209 19 10 363 6 365 1.47e-30 123
MS.gene89988.t1 MTR_7g056087 26.281 449 285 15 18 447 10 431 4.48e-30 122
MS.gene89988.t1 MTR_7g085990 29.016 386 216 18 10 363 2 361 4.43e-29 119
MS.gene89988.t1 MTR_3g026950 26.555 418 248 19 20 401 10 404 2.33e-28 117
MS.gene89988.t1 MTR_4g013050 26.549 452 249 16 20 448 12 403 1.30e-27 114
MS.gene89988.t1 MTR_7g084910 26.712 438 260 16 19 440 24 416 1.31e-25 108
MS.gene89988.t1 MTR_7g086000 26.128 421 257 14 20 405 12 413 1.46e-25 109
MS.gene89988.t1 MTR_3g070170 25.393 445 286 14 41 454 37 466 3.15e-25 108
MS.gene89988.t1 MTR_0502s0010 30.279 251 151 6 106 346 2 238 3.35e-25 103
MS.gene89988.t1 MTR_3g086020 25.821 457 261 20 19 454 12 411 2.50e-23 102
MS.gene89988.t1 MTR_2g007880 26.151 478 276 18 10 455 15 447 1.31e-22 100
MS.gene89988.t1 MTR_8g079970 26.078 464 285 18 20 463 11 436 8.95e-22 97.8
MS.gene89988.t1 MTR_7g114500 36.842 133 78 2 19 149 17 145 9.39e-20 86.3
MS.gene89988.t1 MTR_4g094835 27.737 274 179 8 69 332 64 328 1.03e-19 91.7
MS.gene89988.t1 MTR_3g101960 26.736 288 169 9 69 335 68 334 1.64e-19 91.3
MS.gene89988.t1 MTR_7g114510 25.949 316 196 12 151 452 8 299 2.43e-19 89.0
MS.gene89988.t1 MTR_5g090810 24.877 406 254 15 69 444 66 450 2.95e-19 90.5
MS.gene89988.t1 MTR_3g102020 26.786 280 179 8 69 335 69 335 4.97e-19 89.7
MS.gene89988.t1 MTR_3g101900 27.143 280 178 8 69 335 66 332 8.09e-19 89.0
MS.gene89988.t1 MTR_3g450710 25.946 370 214 14 69 401 65 411 9.07e-19 89.0
MS.gene89988.t1 MTR_5g090880 25.068 367 222 11 69 401 67 414 1.03e-18 89.0
MS.gene89988.t1 MTR_0042s0190 26.496 234 160 6 169 401 1 223 1.23e-18 86.7
MS.gene89988.t1 MTR_5g090830 25.432 405 253 15 69 444 66 450 1.66e-18 88.2
MS.gene89988.t1 MTR_4g094842 27.740 292 176 10 59 330 52 328 1.87e-18 87.8
MS.gene89988.t1 MTR_0042s0230 34.247 146 90 2 6 149 3 144 7.52e-18 80.9
MS.gene89988.t1 MTR_5g084870 24.249 466 287 16 20 464 11 431 1.60e-17 85.1
MS.gene89988.t1 MTR_3g101930 28.674 279 169 9 69 330 70 335 1.85e-17 84.7
MS.gene89988.t1 MTR_7g114960 24.457 368 246 14 10 367 8 353 2.34e-17 84.7
MS.gene89988.t1 MTR_4g094832 27.302 315 206 10 97 403 83 382 2.73e-17 84.3
MS.gene89988.t1 MTR_3g102010 25.704 284 181 8 69 335 65 335 4.62e-17 83.6
MS.gene89988.t1 MTR_4g022825 27.922 308 188 11 69 354 55 350 1.26e-16 82.4
MS.gene89988.t1 MTR_3g450690 24.932 365 221 11 69 401 72 415 1.29e-16 82.4
MS.gene89988.t1 MTR_4g094838 24.507 355 214 9 69 403 64 384 1.74e-16 81.6
MS.gene89988.t1 MTR_4g022720 28.990 307 181 13 69 354 55 345 2.36e-16 81.3
MS.gene89988.t1 MTR_4g022800 27.869 305 193 10 69 354 55 351 6.94e-16 80.1
MS.gene89988.t1 MTR_8g079980 25.054 467 269 19 20 455 11 427 8.27e-16 79.7
MS.gene89988.t1 MTR_4g022760 27.660 329 206 12 69 373 55 375 9.64e-16 79.3
MS.gene89988.t1 MTR_3g051790 38.211 123 66 4 19 137 20 136 1.68e-15 75.1
MS.gene89988.t1 MTR_8g039950 39.604 101 55 2 20 118 17 113 2.45e-15 72.8
MS.gene89988.t1 MTR_3g088420 25.163 306 194 10 69 355 55 344 4.46e-15 77.4
MS.gene89988.t1 MTR_4g094828 24.262 305 210 8 69 358 59 357 9.70e-15 76.6
MS.gene89988.t1 MTR_8g041770 26.220 328 195 11 49 354 48 350 1.58e-14 75.9
MS.gene89988.t1 MTR_4g022670 27.184 309 190 13 69 354 55 351 2.36e-14 75.1
MS.gene89988.t1 MTR_3g026310 25.857 321 185 10 69 357 55 354 2.70e-14 75.1
MS.gene89988.t1 MTR_0190s0020 26.937 271 178 8 69 330 63 322 1.74e-13 72.4
MS.gene89988.t1 MTR_3g049140 29.609 179 107 7 232 397 21 193 2.10e-13 70.5
MS.gene89988.t1 MTR_4g022290 23.466 277 189 7 69 332 60 326 3.50e-13 71.6
MS.gene89988.t1 MTR_5g026320 23.514 387 259 15 25 397 33 396 3.30e-12 68.6
MS.gene89988.t1 MTR_7g026860 26.316 304 199 9 69 354 55 351 3.44e-11 65.5
MS.gene89988.t1 MTR_8g040780 30.303 132 78 3 228 354 16 138 5.15e-11 63.2
MS.gene89988.t1 MTR_7g014200 24.755 408 262 16 69 447 69 460 9.96e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89988.t1 AT5G07080 46.070 458 207 13 10 451 12 445 9.94e-126 373
MS.gene89988.t1 AT2G25150 42.308 468 258 7 1 463 1 461 1.93e-118 355
MS.gene89988.t1 AT2G23510 43.243 444 233 10 19 455 20 451 1.76e-114 344
MS.gene89988.t1 AT3G47170 41.597 476 241 15 1 452 1 463 3.84e-108 328
MS.gene89988.t1 AT1G28680 35.011 457 264 16 11 452 3 441 4.21e-84 266
MS.gene89988.t1 AT1G28680 34.987 383 221 13 11 381 3 369 1.53e-68 224
MS.gene89988.t1 AT5G41040 31.360 456 281 14 7 456 12 441 7.29e-63 210
MS.gene89988.t1 AT5G41040 31.360 456 281 14 7 456 28 457 1.22e-62 210
MS.gene89988.t1 AT3G03480 30.736 462 283 14 2 451 9 445 1.45e-56 194
MS.gene89988.t1 AT3G62160 30.751 413 237 12 8 406 1 378 4.13e-55 189
MS.gene89988.t1 AT5G17540 29.736 454 291 14 7 452 4 437 1.55e-54 189
MS.gene89988.t1 AT3G48720 30.227 440 275 16 19 452 16 429 3.47e-53 184
MS.gene89988.t1 AT5G63560 30.752 452 277 15 7 452 4 425 3.67e-53 184
MS.gene89988.t1 AT1G27620 28.509 456 286 13 18 464 15 439 7.09e-48 171
MS.gene89988.t1 AT2G40230 28.062 449 283 16 12 448 5 425 1.64e-42 156
MS.gene89988.t1 AT1G03390 26.846 447 290 18 19 447 24 451 1.64e-42 157
MS.gene89988.t1 AT5G48930 27.488 422 269 17 10 414 1 402 5.27e-36 138
MS.gene89988.t1 AT1G65450 28.448 464 278 19 10 452 16 446 5.28e-35 135
MS.gene89988.t1 AT5G57840 26.847 406 261 15 10 397 1 388 8.78e-30 121
MS.gene89988.t1 AT2G19070 25.877 456 294 16 20 451 12 447 2.60e-27 114
MS.gene89988.t1 AT4G31910 29.217 332 192 12 69 370 64 382 2.07e-25 108
MS.gene89988.t1 AT4G15390 23.992 471 299 18 6 454 2 435 8.64e-22 97.8
MS.gene89988.t1 AT4G15390 23.992 471 299 18 6 454 2 435 8.64e-22 97.8
MS.gene89988.t1 AT1G24430 25.063 399 249 16 69 455 62 422 1.26e-21 97.4
MS.gene89988.t1 AT3G26040 23.632 457 299 18 19 460 10 431 1.56e-21 97.1
MS.gene89988.t1 AT3G50280 25.840 387 241 15 69 425 59 429 3.18e-20 93.2
MS.gene89988.t1 AT5G07860 29.885 261 154 10 69 316 72 316 3.19e-20 93.2
MS.gene89988.t1 AT3G30280 24.145 468 287 17 19 460 13 438 5.79e-20 92.4
MS.gene89988.t1 AT1G78990 25.935 428 282 17 47 462 47 451 3.48e-19 90.1
MS.gene89988.t1 AT1G31490 25.189 397 250 15 19 397 13 380 1.31e-18 88.6
MS.gene89988.t1 AT1G32910 25.310 403 264 16 66 450 62 445 1.30e-17 85.5
MS.gene89988.t1 AT5G47980 24.842 475 286 20 8 454 1 432 3.42e-17 84.0
MS.gene89988.t1 AT5G07870 28.148 270 155 11 69 315 72 325 1.15e-16 82.4
MS.gene89988.t1 AT5G67150 23.704 405 269 12 69 455 61 443 1.52e-16 82.0
MS.gene89988.t1 AT1G24420 26.593 455 276 24 19 455 12 426 2.01e-16 81.6
MS.gene89988.t1 AT1G24420 26.593 455 276 24 19 455 12 426 2.01e-16 81.6
MS.gene89988.t1 AT2G39980 23.333 450 269 14 59 455 51 477 4.95e-16 80.9
MS.gene89988.t1 AT5G67160 28.364 275 170 12 69 330 56 316 1.17e-15 79.3
MS.gene89988.t1 AT5G42830 25.517 290 186 10 69 341 64 340 6.47e-15 77.0
MS.gene89988.t1 AT3G50280 26.214 309 192 11 138 425 6 299 1.56e-14 74.7
MS.gene89988.t1 AT3G50270 25.140 358 238 14 69 409 62 406 2.15e-14 75.5
MS.gene89988.t1 AT3G29635 26.744 258 176 7 72 317 70 326 9.47e-14 73.6
MS.gene89988.t1 AT5G01210 26.241 282 176 8 83 335 76 354 1.20e-12 70.1
MS.gene89988.t1 AT5G47950 30.108 186 106 9 19 196 13 182 4.16e-12 68.2
MS.gene89988.t1 AT5G23940 23.899 318 211 10 20 316 11 318 1.01e-11 67.4
MS.gene89988.t1 AT5G61160 26.198 313 202 11 149 447 145 442 1.12e-11 67.0
MS.gene89988.t1 AT3G29680 24.437 311 207 11 150 447 144 439 7.82e-11 64.3

Find 96 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCAATGGCTAAGTTTA+AGG 0.175686 4.2:+48170866 MS.gene89988:CDS
CCTTTGCATGAAGGTTATTA+TGG 0.209215 4.2:+48170465 MS.gene89988:CDS
ATTACACAAGCAGGGTCTTT+TGG 0.247753 4.2:-48169727 None:intergenic
AACTTAGCCATTGAAGCTTT+TGG 0.251306 4.2:-48170861 None:intergenic
GGCTTCAAATGTGGTCTTAA+AGG 0.260325 4.2:+48170500 MS.gene89988:CDS
CTTTGTGGTGGTTTCACAAT+TGG 0.270838 4.2:+48170006 MS.gene89988:CDS
TAATGAGGAAAGGGAATATA+AGG 0.273542 4.2:+48170634 MS.gene89988:CDS
GTATACTATTATCCTCTTGC+AGG 0.282976 4.2:+48169775 MS.gene89988:CDS
CCAAAGGATGAGGGCTAGTT+TGG 0.286153 4.2:-48169963 None:intergenic
TTGTTGCAAGAAGTTGATTT+TGG 0.295712 4.2:+48170708 MS.gene89988:CDS
CATCAACTTTCATGACCTTA+AGG 0.315561 4.2:-48170902 None:intergenic
AACCATCTTTGAAACCTGTT+TGG 0.324638 4.2:+48170115 MS.gene89988:CDS
TAAACGGTGAAATTATAAAA+AGG 0.331543 4.2:+48170265 MS.gene89988:CDS
AAACACTCGGTGCATATGTT+TGG 0.353386 4.2:+48170355 MS.gene89988:CDS
CCTGTTCCTTGGAACATGTT+TGG 0.361072 4.2:+48170756 MS.gene89988:CDS
TCATGTGAAATTTCTTTAGT+TGG 0.361629 4.2:-48170231 None:intergenic
TCATTTGGGAAATCAAGATT+TGG 0.367023 4.2:-48169703 None:intergenic
CCAAACTAGCCCTCATCCTT+TGG 0.370894 4.2:+48169963 MS.gene89988:CDS
CATAGTGTTTGTGATGGTTA+TGG 0.389402 4.2:+48170042 MS.gene89988:CDS
CTTCAATGAAAGGAGGAGTT+AGG 0.389486 4.2:+48170823 MS.gene89988:CDS
TTAGCATTTGATTCCATGAA+TGG 0.395349 4.2:-48169856 None:intergenic
ACCATCTTTGAAACCTGTTT+GGG 0.404194 4.2:+48170116 MS.gene89988:CDS
TGGCAGAGAATGTTGATGTT+AGG 0.405640 4.2:-48169661 None:intergenic
GCTTTGAAATTGAACAATGA+TGG 0.405825 4.2:+48170393 MS.gene89988:CDS
TCTTCCCTTCATTATCTTGA+AGG 0.406389 4.2:+48169889 MS.gene89988:CDS
AATTTCCGAAGGTGTGGGCT+TGG 0.407298 4.2:-48169611 None:intergenic
GTTTGTAGACATAAATTGTT+TGG 0.413551 4.2:-48169681 None:intergenic
ATTGAAGAATCCAACTTACT+TGG 0.421620 4.2:-48170807 None:intergenic
GGAGGAGATGGAATTCCTTA+AGG 0.425685 4.2:+48170887 MS.gene89988:CDS
TTATTATGGCAATGCATTTG+TGG 0.436342 4.2:+48170479 MS.gene89988:CDS
CTTCCCTTCATTATCTTGAA+GGG 0.438956 4.2:+48169890 MS.gene89988:CDS
GTCACTTCCAAAAGCTTCAA+TGG 0.442559 4.2:+48170854 MS.gene89988:CDS
ACCCTCCAAGCCCACACCTT+CGG 0.442886 4.2:+48169606 MS.gene89988:CDS
CATCATTGGTGTTAACTGAT+TGG 0.443121 4.2:+48170673 MS.gene89988:CDS
AGAAGCACTCTCAAAAGCTT+TGG 0.444830 4.2:+48169753 MS.gene89988:CDS
TTCCGAAGGTGTGGGCTTGG+AGG 0.448087 4.2:-48169608 None:intergenic
TGTTGGAGATAATGAGGAAA+GGG 0.449792 4.2:+48170625 MS.gene89988:CDS
TGAAGGAACTGGTGCATCAT+TGG 0.453829 4.2:+48170659 MS.gene89988:CDS
CCAAACATGTTCCAAGGAAC+AGG 0.453944 4.2:-48170756 None:intergenic
ACACTTGATGATGGAAAGCT+TGG 0.463753 4.2:+48169808 MS.gene89988:CDS
TCCCAAACAGGTTTCAAAGA+TGG 0.465468 4.2:-48170117 None:intergenic
TGTCCTTGGTATCAAGACTA+AGG 0.469953 4.2:-48169570 None:intergenic
TGAATATTGTGCCTGTTCCT+TGG 0.474624 4.2:+48170745 MS.gene89988:CDS
AGTTGGGGTGAGAAAACTAT+TGG 0.476715 4.2:+48170437 MS.gene89988:CDS
TGGCGACGGAGTTCCATTCA+TGG 0.479811 4.2:+48169843 MS.gene89988:CDS
GGCTAAGTTTAAGGAGGAGA+TGG 0.481711 4.2:+48170875 MS.gene89988:CDS
TCCGAAGGTGTGGGCTTGGA+GGG 0.484015 4.2:-48169607 None:intergenic
CTTTGAAATTGAACAATGAT+GGG 0.484994 4.2:+48170394 MS.gene89988:CDS
GTTATTATCTTTCCTGCAAG+AGG 0.487078 4.2:-48169787 None:intergenic
TTTAACAATCACAATGTCCT+TGG 0.490781 4.2:-48169584 None:intergenic
AAAGGGAATATAAGGGTTGA+AGG 0.493013 4.2:+48170642 MS.gene89988:CDS
GAAGAATCCAACTTACTTGG+AGG 0.494568 4.2:-48170804 None:intergenic
AATATAAGGGTTGAAGGAAC+TGG 0.495175 4.2:+48170648 MS.gene89988:CDS
CAATCCCTTCAAGATAATGA+AGG 0.502121 4.2:-48169894 None:intergenic
TTGGATCCACCTTTGCATGA+AGG 0.506278 4.2:+48170456 MS.gene89988:CDS
TGGTATCAAGACTAAGGGAC+AGG 0.508284 4.2:-48169564 None:intergenic
TTATCTATGAGAAATTGAAA+TGG 0.516169 4.2:-48170180 None:intergenic
AAGATAATAACACTTGATGA+TGG 0.516590 4.2:+48169799 MS.gene89988:CDS
TTAACTGATTGGAGACAACT+TGG 0.516863 4.2:+48170684 MS.gene89988:CDS
TGGTGGTTTCACAATTGGAA+TGG 0.517210 4.2:+48170011 MS.gene89988:CDS
GGTGGTTTCACAATTGGAAT+GGG 0.521542 4.2:+48170012 MS.gene89988:CDS
GCTTCTTTGATTACACAAGC+AGG 0.523958 4.2:-48169736 None:intergenic
GGCTAGTTTGGTCTTGAGAA+GGG 0.526231 4.2:-48169951 None:intergenic
TTAACATGTTGGAGATAATG+AGG 0.531085 4.2:+48170619 MS.gene89988:CDS
GTGACAAAGTTTCTTTGTGG+TGG 0.534259 4.2:+48169994 MS.gene89988:CDS
TGAAAGAATTTCCGAAGGTG+TGG 0.536058 4.2:-48169617 None:intergenic
GATGTTAGGATCATTGTCAA+TGG 0.543218 4.2:-48169647 None:intergenic
GGGCTAGTTTGGTCTTGAGA+AGG 0.544411 4.2:-48169952 None:intergenic
AATGAGGAAAGGGAATATAA+GGG 0.546323 4.2:+48170635 MS.gene89988:CDS
TTTATATATTCATTATTCAA+AGG 0.553206 4.2:-48170588 None:intergenic
GCTCAAAATGAAACTAATGA+AGG 0.557505 4.2:+48170287 MS.gene89988:CDS
TGATGATGACAATGTGATGA+AGG 0.559889 4.2:+48170314 MS.gene89988:CDS
CCATAATAACCTTCATGCAA+AGG 0.562738 4.2:-48170465 None:intergenic
CACTCGGTGCATATGTTTGG+AGG 0.563831 4.2:+48170358 MS.gene89988:CDS
CTTCTTTGATTACACAAGCA+GGG 0.565435 4.2:-48169735 None:intergenic
GAAAGAATTTCCGAAGGTGT+GGG 0.567171 4.2:-48169616 None:intergenic
TGCATTTGTGGCTTCAAATG+TGG 0.568905 4.2:+48170491 MS.gene89988:CDS
AAGTTGGATTCTTCAATGAA+AGG 0.570860 4.2:+48170813 MS.gene89988:CDS
AAGGTGACAAAGTTTCTTTG+TGG 0.576847 4.2:+48169991 MS.gene89988:CDS
GTCCTTGGTATCAAGACTAA+GGG 0.578066 4.2:-48169569 None:intergenic
GGAATCAACTGCAATGGCGA+CGG 0.579539 4.2:+48169829 MS.gene89988:CDS
GCACTTGCTGAACTTGCAAG+TGG 0.593556 4.2:+48170084 MS.gene89988:CDS
ATGTTGGAGATAATGAGGAA+AGG 0.596819 4.2:+48170624 MS.gene89988:CDS
AAGCTTGGAATCAACTGCAA+TGG 0.597334 4.2:+48169823 MS.gene89988:CDS
AATCCCTTCAAGATAATGAA+GGG 0.597371 4.2:-48169893 None:intergenic
TTCAATGGCTAAGTTTAAGG+AGG 0.601083 4.2:+48170869 MS.gene89988:CDS
TTGTCACATAGTGTTTGTGA+TGG 0.601711 4.2:+48170036 MS.gene89988:CDS
TTCACAACACTTGAAACACT+CGG 0.603198 4.2:+48170342 MS.gene89988:CDS
TAATAACCTTCATGCAAAGG+TGG 0.605526 4.2:-48170462 None:intergenic
ACAAAACCAAACATGTTCCA+AGG 0.607274 4.2:-48170762 None:intergenic
GTCCCTTAGTCTTGATACCA+AGG 0.611096 4.2:+48169567 MS.gene89988:CDS
TGCATATGTTTGGAGGTCAA+AGG 0.611126 4.2:+48170365 MS.gene89988:CDS
GTTAGGATCATTGTCAATGG+TGG 0.626574 4.2:-48169644 None:intergenic
TTGGATTCTTCAATGAAAGG+AGG 0.629656 4.2:+48170816 MS.gene89988:CDS
GAAAGTGAAAGAATTTCCGA+AGG 0.685251 4.2:-48169622 None:intergenic
GGTATCAAGACTAAGGGACA+GGG 0.686582 4.2:-48169563 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATTCATTATTCAA+AGG - chr4.2:48170591-48170610 None:intergenic 10.0%
!! AAAAAATTCAATTAACATGT+TGG + chr4.2:48170608-48170627 MS.gene89988:CDS 15.0%
!! TAAACGGTGAAATTATAAAA+AGG + chr4.2:48170265-48170284 MS.gene89988:CDS 20.0%
!! TTATCTATGAGAAATTGAAA+TGG - chr4.2:48170183-48170202 None:intergenic 20.0%
!!! ATTTCTTTAGTTGGTAAAAA+AGG - chr4.2:48170225-48170244 None:intergenic 20.0%
!!! CATGAATGTTTTAACTTAAA+CGG + chr4.2:48170249-48170268 MS.gene89988:CDS 20.0%
! AAGATAATAACACTTGATGA+TGG + chr4.2:48169799-48169818 MS.gene89988:CDS 25.0%
! GTTTGTAGACATAAATTGTT+TGG - chr4.2:48169684-48169703 None:intergenic 25.0%
! TCATGTGAAATTTCTTTAGT+TGG - chr4.2:48170234-48170253 None:intergenic 25.0%
!!! CTTTGAAATTGAACAATGAT+GGG + chr4.2:48170394-48170413 MS.gene89988:CDS 25.0%
AAGTTGGATTCTTCAATGAA+AGG + chr4.2:48170813-48170832 MS.gene89988:CDS 30.0%
AATCCCTTCAAGATAATGAA+GGG - chr4.2:48169896-48169915 None:intergenic 30.0%
AATGAGGAAAGGGAATATAA+GGG + chr4.2:48170635-48170654 MS.gene89988:CDS 30.0%
AGCTTAACAACTTCAAAAAG+TGG - chr4.2:48170546-48170565 None:intergenic 30.0%
ATTGAAGAATCCAACTTACT+TGG - chr4.2:48170810-48170829 None:intergenic 30.0%
GCTCAAAATGAAACTAATGA+AGG + chr4.2:48170287-48170306 MS.gene89988:CDS 30.0%
TAATGAGGAAAGGGAATATA+AGG + chr4.2:48170634-48170653 MS.gene89988:CDS 30.0%
TCATTTGGGAAATCAAGATT+TGG - chr4.2:48169706-48169725 None:intergenic 30.0%
TTAACATGTTGGAGATAATG+AGG + chr4.2:48170619-48170638 MS.gene89988:CDS 30.0%
TTAGCATTTGATTCCATGAA+TGG - chr4.2:48169859-48169878 None:intergenic 30.0%
TTATTATGGCAATGCATTTG+TGG + chr4.2:48170479-48170498 MS.gene89988:CDS 30.0%
TTTAACAATCACAATGTCCT+TGG - chr4.2:48169587-48169606 None:intergenic 30.0%
TTTGTCACCTTAAAAACCAA+AGG - chr4.2:48169982-48170001 None:intergenic 30.0%
!! GCTTTGAAATTGAACAATGA+TGG + chr4.2:48170393-48170412 MS.gene89988:CDS 30.0%
!! TTGTTGCAAGAAGTTGATTT+TGG + chr4.2:48170708-48170727 MS.gene89988:CDS 30.0%
!!! ACTATGTTTTGTTTAGCAGT+TGG + chr4.2:48170420-48170439 MS.gene89988:CDS 30.0%
!!! CTATGTTTTGTTTAGCAGTT+GGG + chr4.2:48170421-48170440 MS.gene89988:CDS 30.0%
!!! TATGTTTTGTTTAGCAGTTG+GGG + chr4.2:48170422-48170441 MS.gene89988:CDS 30.0%
AAAGGGAATATAAGGGTTGA+AGG + chr4.2:48170642-48170661 MS.gene89988:CDS 35.0%
AAGGTGACAAAGTTTCTTTG+TGG + chr4.2:48169991-48170010 MS.gene89988:CDS 35.0%
AATATAAGGGTTGAAGGAAC+TGG + chr4.2:48170648-48170667 MS.gene89988:CDS 35.0%
ACAAAACCAAACATGTTCCA+AGG - chr4.2:48170765-48170784 None:intergenic 35.0%
ACCTTAAAAACCAAAGGATG+AGG - chr4.2:48169976-48169995 None:intergenic 35.0%
ACTTACTTGGAGGCAAAAAA+AGG - chr4.2:48170797-48170816 None:intergenic 35.0%
AGCTTCAATGGCTAAGTTTA+AGG + chr4.2:48170866-48170885 MS.gene89988:CDS 35.0%
ATGTTGGAGATAATGAGGAA+AGG + chr4.2:48170624-48170643 MS.gene89988:CDS 35.0%
CAATCCCTTCAAGATAATGA+AGG - chr4.2:48169897-48169916 None:intergenic 35.0%
CATAGTGTTTGTGATGGTTA+TGG + chr4.2:48170042-48170061 MS.gene89988:CDS 35.0%
CATCAACTTTCATGACCTTA+AGG - chr4.2:48170905-48170924 None:intergenic 35.0%
CCATAATAACCTTCATGCAA+AGG - chr4.2:48170468-48170487 None:intergenic 35.0%
CCTTAAAAACCAAAGGATGA+GGG - chr4.2:48169975-48169994 None:intergenic 35.0%
CCTTTGCATGAAGGTTATTA+TGG + chr4.2:48170465-48170484 MS.gene89988:CDS 35.0%
CTTCCCTTCATTATCTTGAA+GGG + chr4.2:48169890-48169909 MS.gene89988:CDS 35.0%
CTTCTTTGATTACACAAGCA+GGG - chr4.2:48169738-48169757 None:intergenic 35.0%
GAAAGTGAAAGAATTTCCGA+AGG - chr4.2:48169625-48169644 None:intergenic 35.0%
GATGTTAGGATCATTGTCAA+TGG - chr4.2:48169650-48169669 None:intergenic 35.0%
GTATACTATTATCCTCTTGC+AGG + chr4.2:48169775-48169794 MS.gene89988:CDS 35.0%
GTTATTATCTTTCCTGCAAG+AGG - chr4.2:48169790-48169809 None:intergenic 35.0%
TAATAACCTTCATGCAAAGG+TGG - chr4.2:48170465-48170484 None:intergenic 35.0%
TCTTCCCTTCATTATCTTGA+AGG + chr4.2:48169889-48169908 MS.gene89988:CDS 35.0%
TGTTCCAACAGCACAAAAAT+TGG + chr4.2:48169918-48169937 MS.gene89988:CDS 35.0%
TGTTGGAGATAATGAGGAAA+GGG + chr4.2:48170625-48170644 MS.gene89988:CDS 35.0%
TTAACTGATTGGAGACAACT+TGG + chr4.2:48170684-48170703 MS.gene89988:CDS 35.0%
TTCAATGGCTAAGTTTAAGG+AGG + chr4.2:48170869-48170888 MS.gene89988:CDS 35.0%
TTCACAACACTTGAAACACT+CGG + chr4.2:48170342-48170361 MS.gene89988:CDS 35.0%
TTGGATTCTTCAATGAAAGG+AGG + chr4.2:48170816-48170835 MS.gene89988:CDS 35.0%
TTGTCACATAGTGTTTGTGA+TGG + chr4.2:48170036-48170055 MS.gene89988:CDS 35.0%
! AACACCAATTTTTGTGCTGT+TGG - chr4.2:48169925-48169944 None:intergenic 35.0%
! AACTTAGCCATTGAAGCTTT+TGG - chr4.2:48170864-48170883 None:intergenic 35.0%
! TGATGATGACAATGTGATGA+AGG + chr4.2:48170314-48170333 MS.gene89988:CDS 35.0%
!! AACCATCTTTGAAACCTGTT+TGG + chr4.2:48170115-48170134 MS.gene89988:CDS 35.0%
!! ACCATCTTTGAAACCTGTTT+GGG + chr4.2:48170116-48170135 MS.gene89988:CDS 35.0%
!! AGAAGTTGATTTTGGATGGA+AGG + chr4.2:48170716-48170735 MS.gene89988:CDS 35.0%
!! CATCATTGGTGTTAACTGAT+TGG + chr4.2:48170673-48170692 MS.gene89988:CDS 35.0%
!! TGCAAGAAGTTGATTTTGGA+TGG + chr4.2:48170712-48170731 MS.gene89988:CDS 35.0%
!!! TTTTTTGCCTCCAAGTAAGT+TGG + chr4.2:48170797-48170816 MS.gene89988:CDS 35.0%
AAGCTTGGAATCAACTGCAA+TGG + chr4.2:48169823-48169842 MS.gene89988:CDS 40.0%
AGTTGGGGTGAGAAAACTAT+TGG + chr4.2:48170437-48170456 MS.gene89988:CDS 40.0%
CTTCAATGAAAGGAGGAGTT+AGG + chr4.2:48170823-48170842 MS.gene89988:CDS 40.0%
CTTTGTGGTGGTTTCACAAT+TGG + chr4.2:48170006-48170025 MS.gene89988:CDS 40.0%
GAAGAATCCAACTTACTTGG+AGG - chr4.2:48170807-48170826 None:intergenic 40.0%
GCTTCTTTGATTACACAAGC+AGG - chr4.2:48169739-48169758 None:intergenic 40.0%
GGTGGTTTCACAATTGGAAT+GGG + chr4.2:48170012-48170031 MS.gene89988:CDS 40.0%
GTCACTTCCAAAAGCTTCAA+TGG + chr4.2:48170854-48170873 MS.gene89988:CDS 40.0%
GTCCTTGGTATCAAGACTAA+GGG - chr4.2:48169572-48169591 None:intergenic 40.0%
GTGACAAAGTTTCTTTGTGG+TGG + chr4.2:48169994-48170013 MS.gene89988:CDS 40.0%
GTTAGGATCATTGTCAATGG+TGG - chr4.2:48169647-48169666 None:intergenic 40.0%
TCCCAAACAGGTTTCAAAGA+TGG - chr4.2:48170120-48170139 None:intergenic 40.0%
TGAAAGAATTTCCGAAGGTG+TGG - chr4.2:48169620-48169639 None:intergenic 40.0%
TGAATATTGTGCCTGTTCCT+TGG + chr4.2:48170745-48170764 MS.gene89988:CDS 40.0%
TGCATATGTTTGGAGGTCAA+AGG + chr4.2:48170365-48170384 MS.gene89988:CDS 40.0%
TGCATTTGTGGCTTCAAATG+TGG + chr4.2:48170491-48170510 MS.gene89988:CDS 40.0%
TGGCAGAGAATGTTGATGTT+AGG - chr4.2:48169664-48169683 None:intergenic 40.0%
TGGTGGTTTCACAATTGGAA+TGG + chr4.2:48170011-48170030 MS.gene89988:CDS 40.0%
TGTCCTTGGTATCAAGACTA+AGG - chr4.2:48169573-48169592 None:intergenic 40.0%
! ATTACACAAGCAGGGTCTTT+TGG - chr4.2:48169730-48169749 None:intergenic 40.0%
! GAAAGAATTTCCGAAGGTGT+GGG - chr4.2:48169619-48169638 None:intergenic 40.0%
! GGCTTCAAATGTGGTCTTAA+AGG + chr4.2:48170500-48170519 MS.gene89988:CDS 40.0%
! TTACACAAGCAGGGTCTTTT+GGG - chr4.2:48169729-48169748 None:intergenic 40.0%
!! AAACACTCGGTGCATATGTT+TGG + chr4.2:48170355-48170374 MS.gene89988:CDS 40.0%
!! ACACTTGATGATGGAAAGCT+TGG + chr4.2:48169808-48169827 MS.gene89988:CDS 40.0%
!! AGAAGCACTCTCAAAAGCTT+TGG + chr4.2:48169753-48169772 MS.gene89988:CDS 40.0%
!!! CCCTCATCCTTTGGTTTTTA+AGG + chr4.2:48169972-48169991 MS.gene89988:CDS 40.0%
AATCTCTCTCTCTCCCAAAC+AGG - chr4.2:48170132-48170151 None:intergenic 45.0%
CCAAACATGTTCCAAGGAAC+AGG - chr4.2:48170759-48170778 None:intergenic 45.0%
CCTGTTCCTTGGAACATGTT+TGG + chr4.2:48170756-48170775 MS.gene89988:CDS 45.0%
GGAGGAGATGGAATTCCTTA+AGG + chr4.2:48170887-48170906 MS.gene89988:CDS 45.0%
GGCTAAGTTTAAGGAGGAGA+TGG + chr4.2:48170875-48170894 MS.gene89988:CDS 45.0%
GGTATCAAGACTAAGGGACA+GGG - chr4.2:48169566-48169585 None:intergenic 45.0%
TGAAGGAACTGGTGCATCAT+TGG + chr4.2:48170659-48170678 MS.gene89988:CDS 45.0%
TGGTATCAAGACTAAGGGAC+AGG - chr4.2:48169567-48169586 None:intergenic 45.0%
TTGGATCCACCTTTGCATGA+AGG + chr4.2:48170456-48170475 MS.gene89988:CDS 45.0%
!! CAGGGTCTTTTGGGTCATTT+GGG - chr4.2:48169720-48169739 None:intergenic 45.0%
!! GGCTAGTTTGGTCTTGAGAA+GGG - chr4.2:48169954-48169973 None:intergenic 45.0%
!! GTCCCTTAGTCTTGATACCA+AGG + chr4.2:48169567-48169586 MS.gene89988:CDS 45.0%
CCAAACTAGCCCTCATCCTT+TGG + chr4.2:48169963-48169982 MS.gene89988:CDS 50.0%
GGAATCAACTGCAATGGCGA+CGG + chr4.2:48169829-48169848 MS.gene89988:CDS 50.0%
! AATTTCCGAAGGTGTGGGCT+TGG - chr4.2:48169614-48169633 None:intergenic 50.0%
! GCACTTGCTGAACTTGCAAG+TGG + chr4.2:48170084-48170103 MS.gene89988:CDS 50.0%
!! CACTCGGTGCATATGTTTGG+AGG + chr4.2:48170358-48170377 MS.gene89988:CDS 50.0%
!! CCAAAGGATGAGGGCTAGTT+TGG - chr4.2:48169966-48169985 None:intergenic 50.0%
!! GCAGGGTCTTTTGGGTCATT+TGG - chr4.2:48169721-48169740 None:intergenic 50.0%
!! GGGCTAGTTTGGTCTTGAGA+AGG - chr4.2:48169955-48169974 None:intergenic 50.0%
TGGCGACGGAGTTCCATTCA+TGG + chr4.2:48169843-48169862 MS.gene89988:CDS 55.0%
ACCCTCCAAGCCCACACCTT+CGG + chr4.2:48169606-48169625 MS.gene89988:CDS 60.0%
! TCCGAAGGTGTGGGCTTGGA+GGG - chr4.2:48169610-48169629 None:intergenic 60.0%
! TTCCGAAGGTGTGGGCTTGG+AGG - chr4.2:48169611-48169630 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 48169544 48170938 48169544 ID=MS.gene89988
chr4.2 mRNA 48169544 48170938 48169544 ID=MS.gene89988.t1;Parent=MS.gene89988
chr4.2 exon 48169544 48170938 48169544 ID=MS.gene89988.t1.exon1;Parent=MS.gene89988.t1
chr4.2 CDS 48169544 48170938 48169544 ID=cds.MS.gene89988.t1;Parent=MS.gene89988.t1
Gene Sequence

>MS.gene89988

ATGGAAAATTACAAGAAATCCCTGTCCCTTAGTCTTGATACCAAGGACATTGTGATTGTTAAACCCTCCAAGCCCACACCTTCGGAAATTCTTTCACTTTCCACCATTGACAATGATCCTAACATCAACATTCTCTGCCAAACAATTTATGTCTACAAACCAAATCTTGATTTCCCAAATGACCCAAAAGACCCTGCTTGTGTAATCAAAGAAGCACTCTCAAAAGCTTTGGTATACTATTATCCTCTTGCAGGAAAGATAATAACACTTGATGATGGAAAGCTTGGAATCAACTGCAATGGCGACGGAGTTCCATTCATGGAATCAAATGCTAATTGTGAACTCTCTTCCCTTCATTATCTTGAAGGGATTGATGTTCCAACAGCACAAAAATTGGTGTTTGATAACCCTTCTCAAGACCAAACTAGCCCTCATCCTTTGGTTTTTAAGGTGACAAAGTTTCTTTGTGGTGGTTTCACAATTGGAATGGGATTGTCACATAGTGTTTGTGATGGTTATGGTGCATCTCAATTCTATAGAGCACTTGCTGAACTTGCAAGTGGAAAAAATGAACCATCTTTGAAACCTGTTTGGGAGAGAGAGAGATTAACAGTGAAAAGTACTCTTAAAGAACAACCATTTCAATTTCTCATAGATAAGACTTCAATAGCAACTTCACCTTTTTTACCAACTAAAGAAATTTCACATGAATGTTTTAACTTAAACGGTGAAATTATAAAAAGGCTCAAAATGAAACTAATGAAGGAAAGTGATGATGACAATGTGATGAAGGAAAATTTCACAACACTTGAAACACTCGGTGCATATGTTTGGAGGTCAAAGGCAAAAGCTTTGAAATTGAACAATGATGGGAAAACTATGTTTTGTTTAGCAGTTGGGGTGAGAAAACTATTGGATCCACCTTTGCATGAAGGTTATTATGGCAATGCATTTGTGGCTTCAAATGTGGTCTTAAAGGTGAAAGAGCTTAATGAAAAACCACTTTTTGAAGTTGTTAAGCTTATCAAAGAGAGTAAAAAGCTTCCTTTGAATAATGAATATATAAAAAATTCAATTAACATGTTGGAGATAATGAGGAAAGGGAATATAAGGGTTGAAGGAACTGGTGCATCATTGGTGTTAACTGATTGGAGACAACTTGGTTTGTTGCAAGAAGTTGATTTTGGATGGAAGGATTCAGTGAATATTGTGCCTGTTCCTTGGAACATGTTTGGTTTTGTAGATTTATGCCTTTTTTTGCCTCCAAGTAAGTTGGATTCTTCAATGAAAGGAGGAGTTAGGATCTTTGTGTCACTTCCAAAAGCTTCAATGGCTAAGTTTAAGGAGGAGATGGAATTCCTTAAGGTCATGAAAGTTGATGAAGATAACTCCTAG

Protein sequence

>MS.gene89988.t1

MENYKKSLSLSLDTKDIVIVKPSKPTPSEILSLSTIDNDPNINILCQTIYVYKPNLDFPNDPKDPACVIKEALSKALVYYYPLAGKIITLDDGKLGINCNGDGVPFMESNANCELSSLHYLEGIDVPTAQKLVFDNPSQDQTSPHPLVFKVTKFLCGGFTIGMGLSHSVCDGYGASQFYRALAELASGKNEPSLKPVWERERLTVKSTLKEQPFQFLIDKTSIATSPFLPTKEISHECFNLNGEIIKRLKMKLMKESDDDNVMKENFTTLETLGAYVWRSKAKALKLNNDGKTMFCLAVGVRKLLDPPLHEGYYGNAFVASNVVLKVKELNEKPLFEVVKLIKESKKLPLNNEYIKNSINMLEIMRKGNIRVEGTGASLVLTDWRQLGLLQEVDFGWKDSVNIVPVPWNMFGFVDLCLFLPPSKLDSSMKGGVRIFVSLPKASMAKFKEEMEFLKVMKVDEDNS