Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89988.t1 | XP_003606244.1 | 94.6 | 465 | 24 | 1 | 1 | 464 | 1 | 465 | 1.90E-255 | 891.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89988.t1 | Q8GYW8 | 42.3 | 468 | 258 | 7 | 1 | 463 | 1 | 461 | 3.0e-97 | 357.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89988.t1 | G7JKY1 | 94.6 | 465 | 24 | 1 | 1 | 464 | 1 | 465 | 1.3e-255 | 891.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89988.t1 | MTR_4g055170 | 94.624 | 465 | 24 | 1 | 1 | 464 | 1 | 465 | 0.0 | 899 |
MS.gene89988.t1 | MTR_3g465880 | 52.903 | 465 | 197 | 12 | 10 | 457 | 8 | 467 | 3.45e-154 | 446 |
MS.gene89988.t1 | MTR_3g465980 | 50.427 | 468 | 205 | 11 | 6 | 457 | 4 | 460 | 6.88e-154 | 445 |
MS.gene89988.t1 | MTR_3g465990 | 50.214 | 468 | 206 | 13 | 6 | 457 | 4 | 460 | 1.67e-152 | 442 |
MS.gene89988.t1 | MTR_3g465910 | 50.216 | 462 | 202 | 13 | 10 | 454 | 8 | 458 | 1.62e-145 | 426 |
MS.gene89988.t1 | MTR_3g465930 | 49.142 | 466 | 210 | 12 | 10 | 457 | 8 | 464 | 3.55e-145 | 423 |
MS.gene89988.t1 | MTR_6g053810 | 46.467 | 467 | 229 | 10 | 5 | 456 | 4 | 464 | 2.87e-133 | 393 |
MS.gene89988.t1 | MTR_3g465950 | 48.770 | 447 | 200 | 12 | 10 | 442 | 8 | 439 | 4.19e-130 | 384 |
MS.gene89988.t1 | MTR_3g465870 | 44.136 | 469 | 206 | 11 | 1 | 457 | 1 | 425 | 3.28e-116 | 348 |
MS.gene89988.t1 | MTR_2g015430 | 33.333 | 465 | 259 | 18 | 12 | 454 | 2 | 437 | 6.51e-70 | 229 |
MS.gene89988.t1 | MTR_3g098980 | 32.339 | 436 | 266 | 13 | 18 | 449 | 20 | 430 | 2.67e-58 | 198 |
MS.gene89988.t1 | MTR_7g027175 | 32.166 | 457 | 277 | 15 | 2 | 452 | 7 | 436 | 8.19e-57 | 194 |
MS.gene89988.t1 | MTR_8g096530 | 30.937 | 459 | 289 | 12 | 10 | 464 | 5 | 439 | 6.85e-55 | 189 |
MS.gene89988.t1 | MTR_1g081660 | 29.783 | 460 | 294 | 12 | 1 | 452 | 7 | 445 | 8.26e-55 | 189 |
MS.gene89988.t1 | MTR_5g076700 | 28.507 | 442 | 289 | 11 | 19 | 452 | 17 | 439 | 3.32e-51 | 180 |
MS.gene89988.t1 | MTR_1g040215 | 29.062 | 437 | 290 | 9 | 20 | 452 | 17 | 437 | 3.39e-51 | 180 |
MS.gene89988.t1 | MTR_1g053315 | 30.201 | 447 | 282 | 17 | 20 | 451 | 26 | 457 | 8.33e-51 | 179 |
MS.gene89988.t1 | MTR_1g040175 | 30.326 | 399 | 259 | 9 | 7 | 401 | 4 | 387 | 1.06e-49 | 176 |
MS.gene89988.t1 | MTR_7g110610 | 31.514 | 403 | 207 | 13 | 7 | 406 | 2 | 338 | 2.59e-49 | 173 |
MS.gene89988.t1 | MTR_3g071320 | 30.110 | 455 | 283 | 16 | 11 | 455 | 4 | 433 | 3.56e-49 | 174 |
MS.gene89988.t1 | MTR_7g114520 | 29.712 | 451 | 273 | 14 | 19 | 452 | 18 | 441 | 5.06e-47 | 169 |
MS.gene89988.t1 | MTR_7g114550 | 30.025 | 393 | 245 | 11 | 19 | 401 | 17 | 389 | 8.49e-47 | 168 |
MS.gene89988.t1 | MTR_7g114560 | 29.771 | 393 | 246 | 12 | 19 | 401 | 17 | 389 | 2.32e-46 | 167 |
MS.gene89988.t1 | MTR_1g040195 | 27.232 | 448 | 287 | 8 | 6 | 452 | 3 | 412 | 9.91e-46 | 165 |
MS.gene89988.t1 | MTR_7g114470 | 27.865 | 445 | 289 | 13 | 19 | 452 | 18 | 441 | 2.02e-44 | 162 |
MS.gene89988.t1 | MTR_7g114490 | 29.771 | 393 | 246 | 11 | 19 | 401 | 17 | 389 | 2.26e-44 | 162 |
MS.gene89988.t1 | MTR_3g112180 | 27.669 | 459 | 267 | 16 | 17 | 452 | 17 | 433 | 2.71e-43 | 159 |
MS.gene89988.t1 | MTR_1g040320 | 29.490 | 451 | 262 | 12 | 6 | 452 | 3 | 401 | 1.39e-42 | 156 |
MS.gene89988.t1 | MTR_2g105330 | 27.212 | 452 | 288 | 17 | 12 | 449 | 3 | 427 | 1.57e-41 | 153 |
MS.gene89988.t1 | MTR_2g064495 | 26.770 | 452 | 290 | 16 | 12 | 449 | 3 | 427 | 3.66e-41 | 152 |
MS.gene89988.t1 | MTR_8g075610 | 29.148 | 446 | 270 | 17 | 19 | 449 | 1 | 415 | 7.53e-41 | 151 |
MS.gene89988.t1 | MTR_4g007540 | 27.948 | 458 | 278 | 19 | 12 | 449 | 3 | 428 | 2.11e-39 | 147 |
MS.gene89988.t1 | MTR_1g040315 | 26.667 | 450 | 258 | 12 | 20 | 461 | 17 | 402 | 8.43e-38 | 143 |
MS.gene89988.t1 | MTR_4g097090 | 29.454 | 421 | 255 | 13 | 7 | 401 | 4 | 408 | 6.72e-36 | 138 |
MS.gene89988.t1 | MTR_7g084940 | 27.716 | 451 | 291 | 16 | 8 | 448 | 12 | 437 | 2.33e-35 | 136 |
MS.gene89988.t1 | MTR_4g127650 | 29.577 | 355 | 236 | 8 | 15 | 363 | 13 | 359 | 9.09e-34 | 132 |
MS.gene89988.t1 | MTR_3g049150 | 29.383 | 405 | 241 | 16 | 20 | 397 | 10 | 396 | 7.84e-33 | 130 |
MS.gene89988.t1 | MTR_7g085930 | 30.491 | 387 | 209 | 19 | 10 | 363 | 6 | 365 | 1.47e-30 | 123 |
MS.gene89988.t1 | MTR_7g056087 | 26.281 | 449 | 285 | 15 | 18 | 447 | 10 | 431 | 4.48e-30 | 122 |
MS.gene89988.t1 | MTR_7g085990 | 29.016 | 386 | 216 | 18 | 10 | 363 | 2 | 361 | 4.43e-29 | 119 |
MS.gene89988.t1 | MTR_3g026950 | 26.555 | 418 | 248 | 19 | 20 | 401 | 10 | 404 | 2.33e-28 | 117 |
MS.gene89988.t1 | MTR_4g013050 | 26.549 | 452 | 249 | 16 | 20 | 448 | 12 | 403 | 1.30e-27 | 114 |
MS.gene89988.t1 | MTR_7g084910 | 26.712 | 438 | 260 | 16 | 19 | 440 | 24 | 416 | 1.31e-25 | 108 |
MS.gene89988.t1 | MTR_7g086000 | 26.128 | 421 | 257 | 14 | 20 | 405 | 12 | 413 | 1.46e-25 | 109 |
MS.gene89988.t1 | MTR_3g070170 | 25.393 | 445 | 286 | 14 | 41 | 454 | 37 | 466 | 3.15e-25 | 108 |
MS.gene89988.t1 | MTR_0502s0010 | 30.279 | 251 | 151 | 6 | 106 | 346 | 2 | 238 | 3.35e-25 | 103 |
MS.gene89988.t1 | MTR_3g086020 | 25.821 | 457 | 261 | 20 | 19 | 454 | 12 | 411 | 2.50e-23 | 102 |
MS.gene89988.t1 | MTR_2g007880 | 26.151 | 478 | 276 | 18 | 10 | 455 | 15 | 447 | 1.31e-22 | 100 |
MS.gene89988.t1 | MTR_8g079970 | 26.078 | 464 | 285 | 18 | 20 | 463 | 11 | 436 | 8.95e-22 | 97.8 |
MS.gene89988.t1 | MTR_7g114500 | 36.842 | 133 | 78 | 2 | 19 | 149 | 17 | 145 | 9.39e-20 | 86.3 |
MS.gene89988.t1 | MTR_4g094835 | 27.737 | 274 | 179 | 8 | 69 | 332 | 64 | 328 | 1.03e-19 | 91.7 |
MS.gene89988.t1 | MTR_3g101960 | 26.736 | 288 | 169 | 9 | 69 | 335 | 68 | 334 | 1.64e-19 | 91.3 |
MS.gene89988.t1 | MTR_7g114510 | 25.949 | 316 | 196 | 12 | 151 | 452 | 8 | 299 | 2.43e-19 | 89.0 |
MS.gene89988.t1 | MTR_5g090810 | 24.877 | 406 | 254 | 15 | 69 | 444 | 66 | 450 | 2.95e-19 | 90.5 |
MS.gene89988.t1 | MTR_3g102020 | 26.786 | 280 | 179 | 8 | 69 | 335 | 69 | 335 | 4.97e-19 | 89.7 |
MS.gene89988.t1 | MTR_3g101900 | 27.143 | 280 | 178 | 8 | 69 | 335 | 66 | 332 | 8.09e-19 | 89.0 |
MS.gene89988.t1 | MTR_3g450710 | 25.946 | 370 | 214 | 14 | 69 | 401 | 65 | 411 | 9.07e-19 | 89.0 |
MS.gene89988.t1 | MTR_5g090880 | 25.068 | 367 | 222 | 11 | 69 | 401 | 67 | 414 | 1.03e-18 | 89.0 |
MS.gene89988.t1 | MTR_0042s0190 | 26.496 | 234 | 160 | 6 | 169 | 401 | 1 | 223 | 1.23e-18 | 86.7 |
MS.gene89988.t1 | MTR_5g090830 | 25.432 | 405 | 253 | 15 | 69 | 444 | 66 | 450 | 1.66e-18 | 88.2 |
MS.gene89988.t1 | MTR_4g094842 | 27.740 | 292 | 176 | 10 | 59 | 330 | 52 | 328 | 1.87e-18 | 87.8 |
MS.gene89988.t1 | MTR_0042s0230 | 34.247 | 146 | 90 | 2 | 6 | 149 | 3 | 144 | 7.52e-18 | 80.9 |
MS.gene89988.t1 | MTR_5g084870 | 24.249 | 466 | 287 | 16 | 20 | 464 | 11 | 431 | 1.60e-17 | 85.1 |
MS.gene89988.t1 | MTR_3g101930 | 28.674 | 279 | 169 | 9 | 69 | 330 | 70 | 335 | 1.85e-17 | 84.7 |
MS.gene89988.t1 | MTR_7g114960 | 24.457 | 368 | 246 | 14 | 10 | 367 | 8 | 353 | 2.34e-17 | 84.7 |
MS.gene89988.t1 | MTR_4g094832 | 27.302 | 315 | 206 | 10 | 97 | 403 | 83 | 382 | 2.73e-17 | 84.3 |
MS.gene89988.t1 | MTR_3g102010 | 25.704 | 284 | 181 | 8 | 69 | 335 | 65 | 335 | 4.62e-17 | 83.6 |
MS.gene89988.t1 | MTR_4g022825 | 27.922 | 308 | 188 | 11 | 69 | 354 | 55 | 350 | 1.26e-16 | 82.4 |
MS.gene89988.t1 | MTR_3g450690 | 24.932 | 365 | 221 | 11 | 69 | 401 | 72 | 415 | 1.29e-16 | 82.4 |
MS.gene89988.t1 | MTR_4g094838 | 24.507 | 355 | 214 | 9 | 69 | 403 | 64 | 384 | 1.74e-16 | 81.6 |
MS.gene89988.t1 | MTR_4g022720 | 28.990 | 307 | 181 | 13 | 69 | 354 | 55 | 345 | 2.36e-16 | 81.3 |
MS.gene89988.t1 | MTR_4g022800 | 27.869 | 305 | 193 | 10 | 69 | 354 | 55 | 351 | 6.94e-16 | 80.1 |
MS.gene89988.t1 | MTR_8g079980 | 25.054 | 467 | 269 | 19 | 20 | 455 | 11 | 427 | 8.27e-16 | 79.7 |
MS.gene89988.t1 | MTR_4g022760 | 27.660 | 329 | 206 | 12 | 69 | 373 | 55 | 375 | 9.64e-16 | 79.3 |
MS.gene89988.t1 | MTR_3g051790 | 38.211 | 123 | 66 | 4 | 19 | 137 | 20 | 136 | 1.68e-15 | 75.1 |
MS.gene89988.t1 | MTR_8g039950 | 39.604 | 101 | 55 | 2 | 20 | 118 | 17 | 113 | 2.45e-15 | 72.8 |
MS.gene89988.t1 | MTR_3g088420 | 25.163 | 306 | 194 | 10 | 69 | 355 | 55 | 344 | 4.46e-15 | 77.4 |
MS.gene89988.t1 | MTR_4g094828 | 24.262 | 305 | 210 | 8 | 69 | 358 | 59 | 357 | 9.70e-15 | 76.6 |
MS.gene89988.t1 | MTR_8g041770 | 26.220 | 328 | 195 | 11 | 49 | 354 | 48 | 350 | 1.58e-14 | 75.9 |
MS.gene89988.t1 | MTR_4g022670 | 27.184 | 309 | 190 | 13 | 69 | 354 | 55 | 351 | 2.36e-14 | 75.1 |
MS.gene89988.t1 | MTR_3g026310 | 25.857 | 321 | 185 | 10 | 69 | 357 | 55 | 354 | 2.70e-14 | 75.1 |
MS.gene89988.t1 | MTR_0190s0020 | 26.937 | 271 | 178 | 8 | 69 | 330 | 63 | 322 | 1.74e-13 | 72.4 |
MS.gene89988.t1 | MTR_3g049140 | 29.609 | 179 | 107 | 7 | 232 | 397 | 21 | 193 | 2.10e-13 | 70.5 |
MS.gene89988.t1 | MTR_4g022290 | 23.466 | 277 | 189 | 7 | 69 | 332 | 60 | 326 | 3.50e-13 | 71.6 |
MS.gene89988.t1 | MTR_5g026320 | 23.514 | 387 | 259 | 15 | 25 | 397 | 33 | 396 | 3.30e-12 | 68.6 |
MS.gene89988.t1 | MTR_7g026860 | 26.316 | 304 | 199 | 9 | 69 | 354 | 55 | 351 | 3.44e-11 | 65.5 |
MS.gene89988.t1 | MTR_8g040780 | 30.303 | 132 | 78 | 3 | 228 | 354 | 16 | 138 | 5.15e-11 | 63.2 |
MS.gene89988.t1 | MTR_7g014200 | 24.755 | 408 | 262 | 16 | 69 | 447 | 69 | 460 | 9.96e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89988.t1 | AT5G07080 | 46.070 | 458 | 207 | 13 | 10 | 451 | 12 | 445 | 9.94e-126 | 373 |
MS.gene89988.t1 | AT2G25150 | 42.308 | 468 | 258 | 7 | 1 | 463 | 1 | 461 | 1.93e-118 | 355 |
MS.gene89988.t1 | AT2G23510 | 43.243 | 444 | 233 | 10 | 19 | 455 | 20 | 451 | 1.76e-114 | 344 |
MS.gene89988.t1 | AT3G47170 | 41.597 | 476 | 241 | 15 | 1 | 452 | 1 | 463 | 3.84e-108 | 328 |
MS.gene89988.t1 | AT1G28680 | 35.011 | 457 | 264 | 16 | 11 | 452 | 3 | 441 | 4.21e-84 | 266 |
MS.gene89988.t1 | AT1G28680 | 34.987 | 383 | 221 | 13 | 11 | 381 | 3 | 369 | 1.53e-68 | 224 |
MS.gene89988.t1 | AT5G41040 | 31.360 | 456 | 281 | 14 | 7 | 456 | 12 | 441 | 7.29e-63 | 210 |
MS.gene89988.t1 | AT5G41040 | 31.360 | 456 | 281 | 14 | 7 | 456 | 28 | 457 | 1.22e-62 | 210 |
MS.gene89988.t1 | AT3G03480 | 30.736 | 462 | 283 | 14 | 2 | 451 | 9 | 445 | 1.45e-56 | 194 |
MS.gene89988.t1 | AT3G62160 | 30.751 | 413 | 237 | 12 | 8 | 406 | 1 | 378 | 4.13e-55 | 189 |
MS.gene89988.t1 | AT5G17540 | 29.736 | 454 | 291 | 14 | 7 | 452 | 4 | 437 | 1.55e-54 | 189 |
MS.gene89988.t1 | AT3G48720 | 30.227 | 440 | 275 | 16 | 19 | 452 | 16 | 429 | 3.47e-53 | 184 |
MS.gene89988.t1 | AT5G63560 | 30.752 | 452 | 277 | 15 | 7 | 452 | 4 | 425 | 3.67e-53 | 184 |
MS.gene89988.t1 | AT1G27620 | 28.509 | 456 | 286 | 13 | 18 | 464 | 15 | 439 | 7.09e-48 | 171 |
MS.gene89988.t1 | AT2G40230 | 28.062 | 449 | 283 | 16 | 12 | 448 | 5 | 425 | 1.64e-42 | 156 |
MS.gene89988.t1 | AT1G03390 | 26.846 | 447 | 290 | 18 | 19 | 447 | 24 | 451 | 1.64e-42 | 157 |
MS.gene89988.t1 | AT5G48930 | 27.488 | 422 | 269 | 17 | 10 | 414 | 1 | 402 | 5.27e-36 | 138 |
MS.gene89988.t1 | AT1G65450 | 28.448 | 464 | 278 | 19 | 10 | 452 | 16 | 446 | 5.28e-35 | 135 |
MS.gene89988.t1 | AT5G57840 | 26.847 | 406 | 261 | 15 | 10 | 397 | 1 | 388 | 8.78e-30 | 121 |
MS.gene89988.t1 | AT2G19070 | 25.877 | 456 | 294 | 16 | 20 | 451 | 12 | 447 | 2.60e-27 | 114 |
MS.gene89988.t1 | AT4G31910 | 29.217 | 332 | 192 | 12 | 69 | 370 | 64 | 382 | 2.07e-25 | 108 |
MS.gene89988.t1 | AT4G15390 | 23.992 | 471 | 299 | 18 | 6 | 454 | 2 | 435 | 8.64e-22 | 97.8 |
MS.gene89988.t1 | AT4G15390 | 23.992 | 471 | 299 | 18 | 6 | 454 | 2 | 435 | 8.64e-22 | 97.8 |
MS.gene89988.t1 | AT1G24430 | 25.063 | 399 | 249 | 16 | 69 | 455 | 62 | 422 | 1.26e-21 | 97.4 |
MS.gene89988.t1 | AT3G26040 | 23.632 | 457 | 299 | 18 | 19 | 460 | 10 | 431 | 1.56e-21 | 97.1 |
MS.gene89988.t1 | AT3G50280 | 25.840 | 387 | 241 | 15 | 69 | 425 | 59 | 429 | 3.18e-20 | 93.2 |
MS.gene89988.t1 | AT5G07860 | 29.885 | 261 | 154 | 10 | 69 | 316 | 72 | 316 | 3.19e-20 | 93.2 |
MS.gene89988.t1 | AT3G30280 | 24.145 | 468 | 287 | 17 | 19 | 460 | 13 | 438 | 5.79e-20 | 92.4 |
MS.gene89988.t1 | AT1G78990 | 25.935 | 428 | 282 | 17 | 47 | 462 | 47 | 451 | 3.48e-19 | 90.1 |
MS.gene89988.t1 | AT1G31490 | 25.189 | 397 | 250 | 15 | 19 | 397 | 13 | 380 | 1.31e-18 | 88.6 |
MS.gene89988.t1 | AT1G32910 | 25.310 | 403 | 264 | 16 | 66 | 450 | 62 | 445 | 1.30e-17 | 85.5 |
MS.gene89988.t1 | AT5G47980 | 24.842 | 475 | 286 | 20 | 8 | 454 | 1 | 432 | 3.42e-17 | 84.0 |
MS.gene89988.t1 | AT5G07870 | 28.148 | 270 | 155 | 11 | 69 | 315 | 72 | 325 | 1.15e-16 | 82.4 |
MS.gene89988.t1 | AT5G67150 | 23.704 | 405 | 269 | 12 | 69 | 455 | 61 | 443 | 1.52e-16 | 82.0 |
MS.gene89988.t1 | AT1G24420 | 26.593 | 455 | 276 | 24 | 19 | 455 | 12 | 426 | 2.01e-16 | 81.6 |
MS.gene89988.t1 | AT1G24420 | 26.593 | 455 | 276 | 24 | 19 | 455 | 12 | 426 | 2.01e-16 | 81.6 |
MS.gene89988.t1 | AT2G39980 | 23.333 | 450 | 269 | 14 | 59 | 455 | 51 | 477 | 4.95e-16 | 80.9 |
MS.gene89988.t1 | AT5G67160 | 28.364 | 275 | 170 | 12 | 69 | 330 | 56 | 316 | 1.17e-15 | 79.3 |
MS.gene89988.t1 | AT5G42830 | 25.517 | 290 | 186 | 10 | 69 | 341 | 64 | 340 | 6.47e-15 | 77.0 |
MS.gene89988.t1 | AT3G50280 | 26.214 | 309 | 192 | 11 | 138 | 425 | 6 | 299 | 1.56e-14 | 74.7 |
MS.gene89988.t1 | AT3G50270 | 25.140 | 358 | 238 | 14 | 69 | 409 | 62 | 406 | 2.15e-14 | 75.5 |
MS.gene89988.t1 | AT3G29635 | 26.744 | 258 | 176 | 7 | 72 | 317 | 70 | 326 | 9.47e-14 | 73.6 |
MS.gene89988.t1 | AT5G01210 | 26.241 | 282 | 176 | 8 | 83 | 335 | 76 | 354 | 1.20e-12 | 70.1 |
MS.gene89988.t1 | AT5G47950 | 30.108 | 186 | 106 | 9 | 19 | 196 | 13 | 182 | 4.16e-12 | 68.2 |
MS.gene89988.t1 | AT5G23940 | 23.899 | 318 | 211 | 10 | 20 | 316 | 11 | 318 | 1.01e-11 | 67.4 |
MS.gene89988.t1 | AT5G61160 | 26.198 | 313 | 202 | 11 | 149 | 447 | 145 | 442 | 1.12e-11 | 67.0 |
MS.gene89988.t1 | AT3G29680 | 24.437 | 311 | 207 | 11 | 150 | 447 | 144 | 439 | 7.82e-11 | 64.3 |
Find 96 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTTCAATGGCTAAGTTTA+AGG | 0.175686 | 4.2:+48170866 | MS.gene89988:CDS |
CCTTTGCATGAAGGTTATTA+TGG | 0.209215 | 4.2:+48170465 | MS.gene89988:CDS |
ATTACACAAGCAGGGTCTTT+TGG | 0.247753 | 4.2:-48169727 | None:intergenic |
AACTTAGCCATTGAAGCTTT+TGG | 0.251306 | 4.2:-48170861 | None:intergenic |
GGCTTCAAATGTGGTCTTAA+AGG | 0.260325 | 4.2:+48170500 | MS.gene89988:CDS |
CTTTGTGGTGGTTTCACAAT+TGG | 0.270838 | 4.2:+48170006 | MS.gene89988:CDS |
TAATGAGGAAAGGGAATATA+AGG | 0.273542 | 4.2:+48170634 | MS.gene89988:CDS |
GTATACTATTATCCTCTTGC+AGG | 0.282976 | 4.2:+48169775 | MS.gene89988:CDS |
CCAAAGGATGAGGGCTAGTT+TGG | 0.286153 | 4.2:-48169963 | None:intergenic |
TTGTTGCAAGAAGTTGATTT+TGG | 0.295712 | 4.2:+48170708 | MS.gene89988:CDS |
CATCAACTTTCATGACCTTA+AGG | 0.315561 | 4.2:-48170902 | None:intergenic |
AACCATCTTTGAAACCTGTT+TGG | 0.324638 | 4.2:+48170115 | MS.gene89988:CDS |
TAAACGGTGAAATTATAAAA+AGG | 0.331543 | 4.2:+48170265 | MS.gene89988:CDS |
AAACACTCGGTGCATATGTT+TGG | 0.353386 | 4.2:+48170355 | MS.gene89988:CDS |
CCTGTTCCTTGGAACATGTT+TGG | 0.361072 | 4.2:+48170756 | MS.gene89988:CDS |
TCATGTGAAATTTCTTTAGT+TGG | 0.361629 | 4.2:-48170231 | None:intergenic |
TCATTTGGGAAATCAAGATT+TGG | 0.367023 | 4.2:-48169703 | None:intergenic |
CCAAACTAGCCCTCATCCTT+TGG | 0.370894 | 4.2:+48169963 | MS.gene89988:CDS |
CATAGTGTTTGTGATGGTTA+TGG | 0.389402 | 4.2:+48170042 | MS.gene89988:CDS |
CTTCAATGAAAGGAGGAGTT+AGG | 0.389486 | 4.2:+48170823 | MS.gene89988:CDS |
TTAGCATTTGATTCCATGAA+TGG | 0.395349 | 4.2:-48169856 | None:intergenic |
ACCATCTTTGAAACCTGTTT+GGG | 0.404194 | 4.2:+48170116 | MS.gene89988:CDS |
TGGCAGAGAATGTTGATGTT+AGG | 0.405640 | 4.2:-48169661 | None:intergenic |
GCTTTGAAATTGAACAATGA+TGG | 0.405825 | 4.2:+48170393 | MS.gene89988:CDS |
TCTTCCCTTCATTATCTTGA+AGG | 0.406389 | 4.2:+48169889 | MS.gene89988:CDS |
AATTTCCGAAGGTGTGGGCT+TGG | 0.407298 | 4.2:-48169611 | None:intergenic |
GTTTGTAGACATAAATTGTT+TGG | 0.413551 | 4.2:-48169681 | None:intergenic |
ATTGAAGAATCCAACTTACT+TGG | 0.421620 | 4.2:-48170807 | None:intergenic |
GGAGGAGATGGAATTCCTTA+AGG | 0.425685 | 4.2:+48170887 | MS.gene89988:CDS |
TTATTATGGCAATGCATTTG+TGG | 0.436342 | 4.2:+48170479 | MS.gene89988:CDS |
CTTCCCTTCATTATCTTGAA+GGG | 0.438956 | 4.2:+48169890 | MS.gene89988:CDS |
GTCACTTCCAAAAGCTTCAA+TGG | 0.442559 | 4.2:+48170854 | MS.gene89988:CDS |
ACCCTCCAAGCCCACACCTT+CGG | 0.442886 | 4.2:+48169606 | MS.gene89988:CDS |
CATCATTGGTGTTAACTGAT+TGG | 0.443121 | 4.2:+48170673 | MS.gene89988:CDS |
AGAAGCACTCTCAAAAGCTT+TGG | 0.444830 | 4.2:+48169753 | MS.gene89988:CDS |
TTCCGAAGGTGTGGGCTTGG+AGG | 0.448087 | 4.2:-48169608 | None:intergenic |
TGTTGGAGATAATGAGGAAA+GGG | 0.449792 | 4.2:+48170625 | MS.gene89988:CDS |
TGAAGGAACTGGTGCATCAT+TGG | 0.453829 | 4.2:+48170659 | MS.gene89988:CDS |
CCAAACATGTTCCAAGGAAC+AGG | 0.453944 | 4.2:-48170756 | None:intergenic |
ACACTTGATGATGGAAAGCT+TGG | 0.463753 | 4.2:+48169808 | MS.gene89988:CDS |
TCCCAAACAGGTTTCAAAGA+TGG | 0.465468 | 4.2:-48170117 | None:intergenic |
TGTCCTTGGTATCAAGACTA+AGG | 0.469953 | 4.2:-48169570 | None:intergenic |
TGAATATTGTGCCTGTTCCT+TGG | 0.474624 | 4.2:+48170745 | MS.gene89988:CDS |
AGTTGGGGTGAGAAAACTAT+TGG | 0.476715 | 4.2:+48170437 | MS.gene89988:CDS |
TGGCGACGGAGTTCCATTCA+TGG | 0.479811 | 4.2:+48169843 | MS.gene89988:CDS |
GGCTAAGTTTAAGGAGGAGA+TGG | 0.481711 | 4.2:+48170875 | MS.gene89988:CDS |
TCCGAAGGTGTGGGCTTGGA+GGG | 0.484015 | 4.2:-48169607 | None:intergenic |
CTTTGAAATTGAACAATGAT+GGG | 0.484994 | 4.2:+48170394 | MS.gene89988:CDS |
GTTATTATCTTTCCTGCAAG+AGG | 0.487078 | 4.2:-48169787 | None:intergenic |
TTTAACAATCACAATGTCCT+TGG | 0.490781 | 4.2:-48169584 | None:intergenic |
AAAGGGAATATAAGGGTTGA+AGG | 0.493013 | 4.2:+48170642 | MS.gene89988:CDS |
GAAGAATCCAACTTACTTGG+AGG | 0.494568 | 4.2:-48170804 | None:intergenic |
AATATAAGGGTTGAAGGAAC+TGG | 0.495175 | 4.2:+48170648 | MS.gene89988:CDS |
CAATCCCTTCAAGATAATGA+AGG | 0.502121 | 4.2:-48169894 | None:intergenic |
TTGGATCCACCTTTGCATGA+AGG | 0.506278 | 4.2:+48170456 | MS.gene89988:CDS |
TGGTATCAAGACTAAGGGAC+AGG | 0.508284 | 4.2:-48169564 | None:intergenic |
TTATCTATGAGAAATTGAAA+TGG | 0.516169 | 4.2:-48170180 | None:intergenic |
AAGATAATAACACTTGATGA+TGG | 0.516590 | 4.2:+48169799 | MS.gene89988:CDS |
TTAACTGATTGGAGACAACT+TGG | 0.516863 | 4.2:+48170684 | MS.gene89988:CDS |
TGGTGGTTTCACAATTGGAA+TGG | 0.517210 | 4.2:+48170011 | MS.gene89988:CDS |
GGTGGTTTCACAATTGGAAT+GGG | 0.521542 | 4.2:+48170012 | MS.gene89988:CDS |
GCTTCTTTGATTACACAAGC+AGG | 0.523958 | 4.2:-48169736 | None:intergenic |
GGCTAGTTTGGTCTTGAGAA+GGG | 0.526231 | 4.2:-48169951 | None:intergenic |
TTAACATGTTGGAGATAATG+AGG | 0.531085 | 4.2:+48170619 | MS.gene89988:CDS |
GTGACAAAGTTTCTTTGTGG+TGG | 0.534259 | 4.2:+48169994 | MS.gene89988:CDS |
TGAAAGAATTTCCGAAGGTG+TGG | 0.536058 | 4.2:-48169617 | None:intergenic |
GATGTTAGGATCATTGTCAA+TGG | 0.543218 | 4.2:-48169647 | None:intergenic |
GGGCTAGTTTGGTCTTGAGA+AGG | 0.544411 | 4.2:-48169952 | None:intergenic |
AATGAGGAAAGGGAATATAA+GGG | 0.546323 | 4.2:+48170635 | MS.gene89988:CDS |
TTTATATATTCATTATTCAA+AGG | 0.553206 | 4.2:-48170588 | None:intergenic |
GCTCAAAATGAAACTAATGA+AGG | 0.557505 | 4.2:+48170287 | MS.gene89988:CDS |
TGATGATGACAATGTGATGA+AGG | 0.559889 | 4.2:+48170314 | MS.gene89988:CDS |
CCATAATAACCTTCATGCAA+AGG | 0.562738 | 4.2:-48170465 | None:intergenic |
CACTCGGTGCATATGTTTGG+AGG | 0.563831 | 4.2:+48170358 | MS.gene89988:CDS |
CTTCTTTGATTACACAAGCA+GGG | 0.565435 | 4.2:-48169735 | None:intergenic |
GAAAGAATTTCCGAAGGTGT+GGG | 0.567171 | 4.2:-48169616 | None:intergenic |
TGCATTTGTGGCTTCAAATG+TGG | 0.568905 | 4.2:+48170491 | MS.gene89988:CDS |
AAGTTGGATTCTTCAATGAA+AGG | 0.570860 | 4.2:+48170813 | MS.gene89988:CDS |
AAGGTGACAAAGTTTCTTTG+TGG | 0.576847 | 4.2:+48169991 | MS.gene89988:CDS |
GTCCTTGGTATCAAGACTAA+GGG | 0.578066 | 4.2:-48169569 | None:intergenic |
GGAATCAACTGCAATGGCGA+CGG | 0.579539 | 4.2:+48169829 | MS.gene89988:CDS |
GCACTTGCTGAACTTGCAAG+TGG | 0.593556 | 4.2:+48170084 | MS.gene89988:CDS |
ATGTTGGAGATAATGAGGAA+AGG | 0.596819 | 4.2:+48170624 | MS.gene89988:CDS |
AAGCTTGGAATCAACTGCAA+TGG | 0.597334 | 4.2:+48169823 | MS.gene89988:CDS |
AATCCCTTCAAGATAATGAA+GGG | 0.597371 | 4.2:-48169893 | None:intergenic |
TTCAATGGCTAAGTTTAAGG+AGG | 0.601083 | 4.2:+48170869 | MS.gene89988:CDS |
TTGTCACATAGTGTTTGTGA+TGG | 0.601711 | 4.2:+48170036 | MS.gene89988:CDS |
TTCACAACACTTGAAACACT+CGG | 0.603198 | 4.2:+48170342 | MS.gene89988:CDS |
TAATAACCTTCATGCAAAGG+TGG | 0.605526 | 4.2:-48170462 | None:intergenic |
ACAAAACCAAACATGTTCCA+AGG | 0.607274 | 4.2:-48170762 | None:intergenic |
GTCCCTTAGTCTTGATACCA+AGG | 0.611096 | 4.2:+48169567 | MS.gene89988:CDS |
TGCATATGTTTGGAGGTCAA+AGG | 0.611126 | 4.2:+48170365 | MS.gene89988:CDS |
GTTAGGATCATTGTCAATGG+TGG | 0.626574 | 4.2:-48169644 | None:intergenic |
TTGGATTCTTCAATGAAAGG+AGG | 0.629656 | 4.2:+48170816 | MS.gene89988:CDS |
GAAAGTGAAAGAATTTCCGA+AGG | 0.685251 | 4.2:-48169622 | None:intergenic |
GGTATCAAGACTAAGGGACA+GGG | 0.686582 | 4.2:-48169563 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATATATTCATTATTCAA+AGG | - | chr4.2:48170591-48170610 | None:intergenic | 10.0% |
!! | AAAAAATTCAATTAACATGT+TGG | + | chr4.2:48170608-48170627 | MS.gene89988:CDS | 15.0% |
!! | TAAACGGTGAAATTATAAAA+AGG | + | chr4.2:48170265-48170284 | MS.gene89988:CDS | 20.0% |
!! | TTATCTATGAGAAATTGAAA+TGG | - | chr4.2:48170183-48170202 | None:intergenic | 20.0% |
!!! | ATTTCTTTAGTTGGTAAAAA+AGG | - | chr4.2:48170225-48170244 | None:intergenic | 20.0% |
!!! | CATGAATGTTTTAACTTAAA+CGG | + | chr4.2:48170249-48170268 | MS.gene89988:CDS | 20.0% |
! | AAGATAATAACACTTGATGA+TGG | + | chr4.2:48169799-48169818 | MS.gene89988:CDS | 25.0% |
! | GTTTGTAGACATAAATTGTT+TGG | - | chr4.2:48169684-48169703 | None:intergenic | 25.0% |
! | TCATGTGAAATTTCTTTAGT+TGG | - | chr4.2:48170234-48170253 | None:intergenic | 25.0% |
!!! | CTTTGAAATTGAACAATGAT+GGG | + | chr4.2:48170394-48170413 | MS.gene89988:CDS | 25.0% |
AAGTTGGATTCTTCAATGAA+AGG | + | chr4.2:48170813-48170832 | MS.gene89988:CDS | 30.0% | |
AATCCCTTCAAGATAATGAA+GGG | - | chr4.2:48169896-48169915 | None:intergenic | 30.0% | |
AATGAGGAAAGGGAATATAA+GGG | + | chr4.2:48170635-48170654 | MS.gene89988:CDS | 30.0% | |
AGCTTAACAACTTCAAAAAG+TGG | - | chr4.2:48170546-48170565 | None:intergenic | 30.0% | |
ATTGAAGAATCCAACTTACT+TGG | - | chr4.2:48170810-48170829 | None:intergenic | 30.0% | |
GCTCAAAATGAAACTAATGA+AGG | + | chr4.2:48170287-48170306 | MS.gene89988:CDS | 30.0% | |
TAATGAGGAAAGGGAATATA+AGG | + | chr4.2:48170634-48170653 | MS.gene89988:CDS | 30.0% | |
TCATTTGGGAAATCAAGATT+TGG | - | chr4.2:48169706-48169725 | None:intergenic | 30.0% | |
TTAACATGTTGGAGATAATG+AGG | + | chr4.2:48170619-48170638 | MS.gene89988:CDS | 30.0% | |
TTAGCATTTGATTCCATGAA+TGG | - | chr4.2:48169859-48169878 | None:intergenic | 30.0% | |
TTATTATGGCAATGCATTTG+TGG | + | chr4.2:48170479-48170498 | MS.gene89988:CDS | 30.0% | |
TTTAACAATCACAATGTCCT+TGG | - | chr4.2:48169587-48169606 | None:intergenic | 30.0% | |
TTTGTCACCTTAAAAACCAA+AGG | - | chr4.2:48169982-48170001 | None:intergenic | 30.0% | |
!! | GCTTTGAAATTGAACAATGA+TGG | + | chr4.2:48170393-48170412 | MS.gene89988:CDS | 30.0% |
!! | TTGTTGCAAGAAGTTGATTT+TGG | + | chr4.2:48170708-48170727 | MS.gene89988:CDS | 30.0% |
!!! | ACTATGTTTTGTTTAGCAGT+TGG | + | chr4.2:48170420-48170439 | MS.gene89988:CDS | 30.0% |
!!! | CTATGTTTTGTTTAGCAGTT+GGG | + | chr4.2:48170421-48170440 | MS.gene89988:CDS | 30.0% |
!!! | TATGTTTTGTTTAGCAGTTG+GGG | + | chr4.2:48170422-48170441 | MS.gene89988:CDS | 30.0% |
AAAGGGAATATAAGGGTTGA+AGG | + | chr4.2:48170642-48170661 | MS.gene89988:CDS | 35.0% | |
AAGGTGACAAAGTTTCTTTG+TGG | + | chr4.2:48169991-48170010 | MS.gene89988:CDS | 35.0% | |
AATATAAGGGTTGAAGGAAC+TGG | + | chr4.2:48170648-48170667 | MS.gene89988:CDS | 35.0% | |
ACAAAACCAAACATGTTCCA+AGG | - | chr4.2:48170765-48170784 | None:intergenic | 35.0% | |
ACCTTAAAAACCAAAGGATG+AGG | - | chr4.2:48169976-48169995 | None:intergenic | 35.0% | |
ACTTACTTGGAGGCAAAAAA+AGG | - | chr4.2:48170797-48170816 | None:intergenic | 35.0% | |
AGCTTCAATGGCTAAGTTTA+AGG | + | chr4.2:48170866-48170885 | MS.gene89988:CDS | 35.0% | |
ATGTTGGAGATAATGAGGAA+AGG | + | chr4.2:48170624-48170643 | MS.gene89988:CDS | 35.0% | |
CAATCCCTTCAAGATAATGA+AGG | - | chr4.2:48169897-48169916 | None:intergenic | 35.0% | |
CATAGTGTTTGTGATGGTTA+TGG | + | chr4.2:48170042-48170061 | MS.gene89988:CDS | 35.0% | |
CATCAACTTTCATGACCTTA+AGG | - | chr4.2:48170905-48170924 | None:intergenic | 35.0% | |
CCATAATAACCTTCATGCAA+AGG | - | chr4.2:48170468-48170487 | None:intergenic | 35.0% | |
CCTTAAAAACCAAAGGATGA+GGG | - | chr4.2:48169975-48169994 | None:intergenic | 35.0% | |
CCTTTGCATGAAGGTTATTA+TGG | + | chr4.2:48170465-48170484 | MS.gene89988:CDS | 35.0% | |
CTTCCCTTCATTATCTTGAA+GGG | + | chr4.2:48169890-48169909 | MS.gene89988:CDS | 35.0% | |
CTTCTTTGATTACACAAGCA+GGG | - | chr4.2:48169738-48169757 | None:intergenic | 35.0% | |
GAAAGTGAAAGAATTTCCGA+AGG | - | chr4.2:48169625-48169644 | None:intergenic | 35.0% | |
GATGTTAGGATCATTGTCAA+TGG | - | chr4.2:48169650-48169669 | None:intergenic | 35.0% | |
GTATACTATTATCCTCTTGC+AGG | + | chr4.2:48169775-48169794 | MS.gene89988:CDS | 35.0% | |
GTTATTATCTTTCCTGCAAG+AGG | - | chr4.2:48169790-48169809 | None:intergenic | 35.0% | |
TAATAACCTTCATGCAAAGG+TGG | - | chr4.2:48170465-48170484 | None:intergenic | 35.0% | |
TCTTCCCTTCATTATCTTGA+AGG | + | chr4.2:48169889-48169908 | MS.gene89988:CDS | 35.0% | |
TGTTCCAACAGCACAAAAAT+TGG | + | chr4.2:48169918-48169937 | MS.gene89988:CDS | 35.0% | |
TGTTGGAGATAATGAGGAAA+GGG | + | chr4.2:48170625-48170644 | MS.gene89988:CDS | 35.0% | |
TTAACTGATTGGAGACAACT+TGG | + | chr4.2:48170684-48170703 | MS.gene89988:CDS | 35.0% | |
TTCAATGGCTAAGTTTAAGG+AGG | + | chr4.2:48170869-48170888 | MS.gene89988:CDS | 35.0% | |
TTCACAACACTTGAAACACT+CGG | + | chr4.2:48170342-48170361 | MS.gene89988:CDS | 35.0% | |
TTGGATTCTTCAATGAAAGG+AGG | + | chr4.2:48170816-48170835 | MS.gene89988:CDS | 35.0% | |
TTGTCACATAGTGTTTGTGA+TGG | + | chr4.2:48170036-48170055 | MS.gene89988:CDS | 35.0% | |
! | AACACCAATTTTTGTGCTGT+TGG | - | chr4.2:48169925-48169944 | None:intergenic | 35.0% |
! | AACTTAGCCATTGAAGCTTT+TGG | - | chr4.2:48170864-48170883 | None:intergenic | 35.0% |
! | TGATGATGACAATGTGATGA+AGG | + | chr4.2:48170314-48170333 | MS.gene89988:CDS | 35.0% |
!! | AACCATCTTTGAAACCTGTT+TGG | + | chr4.2:48170115-48170134 | MS.gene89988:CDS | 35.0% |
!! | ACCATCTTTGAAACCTGTTT+GGG | + | chr4.2:48170116-48170135 | MS.gene89988:CDS | 35.0% |
!! | AGAAGTTGATTTTGGATGGA+AGG | + | chr4.2:48170716-48170735 | MS.gene89988:CDS | 35.0% |
!! | CATCATTGGTGTTAACTGAT+TGG | + | chr4.2:48170673-48170692 | MS.gene89988:CDS | 35.0% |
!! | TGCAAGAAGTTGATTTTGGA+TGG | + | chr4.2:48170712-48170731 | MS.gene89988:CDS | 35.0% |
!!! | TTTTTTGCCTCCAAGTAAGT+TGG | + | chr4.2:48170797-48170816 | MS.gene89988:CDS | 35.0% |
AAGCTTGGAATCAACTGCAA+TGG | + | chr4.2:48169823-48169842 | MS.gene89988:CDS | 40.0% | |
AGTTGGGGTGAGAAAACTAT+TGG | + | chr4.2:48170437-48170456 | MS.gene89988:CDS | 40.0% | |
CTTCAATGAAAGGAGGAGTT+AGG | + | chr4.2:48170823-48170842 | MS.gene89988:CDS | 40.0% | |
CTTTGTGGTGGTTTCACAAT+TGG | + | chr4.2:48170006-48170025 | MS.gene89988:CDS | 40.0% | |
GAAGAATCCAACTTACTTGG+AGG | - | chr4.2:48170807-48170826 | None:intergenic | 40.0% | |
GCTTCTTTGATTACACAAGC+AGG | - | chr4.2:48169739-48169758 | None:intergenic | 40.0% | |
GGTGGTTTCACAATTGGAAT+GGG | + | chr4.2:48170012-48170031 | MS.gene89988:CDS | 40.0% | |
GTCACTTCCAAAAGCTTCAA+TGG | + | chr4.2:48170854-48170873 | MS.gene89988:CDS | 40.0% | |
GTCCTTGGTATCAAGACTAA+GGG | - | chr4.2:48169572-48169591 | None:intergenic | 40.0% | |
GTGACAAAGTTTCTTTGTGG+TGG | + | chr4.2:48169994-48170013 | MS.gene89988:CDS | 40.0% | |
GTTAGGATCATTGTCAATGG+TGG | - | chr4.2:48169647-48169666 | None:intergenic | 40.0% | |
TCCCAAACAGGTTTCAAAGA+TGG | - | chr4.2:48170120-48170139 | None:intergenic | 40.0% | |
TGAAAGAATTTCCGAAGGTG+TGG | - | chr4.2:48169620-48169639 | None:intergenic | 40.0% | |
TGAATATTGTGCCTGTTCCT+TGG | + | chr4.2:48170745-48170764 | MS.gene89988:CDS | 40.0% | |
TGCATATGTTTGGAGGTCAA+AGG | + | chr4.2:48170365-48170384 | MS.gene89988:CDS | 40.0% | |
TGCATTTGTGGCTTCAAATG+TGG | + | chr4.2:48170491-48170510 | MS.gene89988:CDS | 40.0% | |
TGGCAGAGAATGTTGATGTT+AGG | - | chr4.2:48169664-48169683 | None:intergenic | 40.0% | |
TGGTGGTTTCACAATTGGAA+TGG | + | chr4.2:48170011-48170030 | MS.gene89988:CDS | 40.0% | |
TGTCCTTGGTATCAAGACTA+AGG | - | chr4.2:48169573-48169592 | None:intergenic | 40.0% | |
! | ATTACACAAGCAGGGTCTTT+TGG | - | chr4.2:48169730-48169749 | None:intergenic | 40.0% |
! | GAAAGAATTTCCGAAGGTGT+GGG | - | chr4.2:48169619-48169638 | None:intergenic | 40.0% |
! | GGCTTCAAATGTGGTCTTAA+AGG | + | chr4.2:48170500-48170519 | MS.gene89988:CDS | 40.0% |
! | TTACACAAGCAGGGTCTTTT+GGG | - | chr4.2:48169729-48169748 | None:intergenic | 40.0% |
!! | AAACACTCGGTGCATATGTT+TGG | + | chr4.2:48170355-48170374 | MS.gene89988:CDS | 40.0% |
!! | ACACTTGATGATGGAAAGCT+TGG | + | chr4.2:48169808-48169827 | MS.gene89988:CDS | 40.0% |
!! | AGAAGCACTCTCAAAAGCTT+TGG | + | chr4.2:48169753-48169772 | MS.gene89988:CDS | 40.0% |
!!! | CCCTCATCCTTTGGTTTTTA+AGG | + | chr4.2:48169972-48169991 | MS.gene89988:CDS | 40.0% |
AATCTCTCTCTCTCCCAAAC+AGG | - | chr4.2:48170132-48170151 | None:intergenic | 45.0% | |
CCAAACATGTTCCAAGGAAC+AGG | - | chr4.2:48170759-48170778 | None:intergenic | 45.0% | |
CCTGTTCCTTGGAACATGTT+TGG | + | chr4.2:48170756-48170775 | MS.gene89988:CDS | 45.0% | |
GGAGGAGATGGAATTCCTTA+AGG | + | chr4.2:48170887-48170906 | MS.gene89988:CDS | 45.0% | |
GGCTAAGTTTAAGGAGGAGA+TGG | + | chr4.2:48170875-48170894 | MS.gene89988:CDS | 45.0% | |
GGTATCAAGACTAAGGGACA+GGG | - | chr4.2:48169566-48169585 | None:intergenic | 45.0% | |
TGAAGGAACTGGTGCATCAT+TGG | + | chr4.2:48170659-48170678 | MS.gene89988:CDS | 45.0% | |
TGGTATCAAGACTAAGGGAC+AGG | - | chr4.2:48169567-48169586 | None:intergenic | 45.0% | |
TTGGATCCACCTTTGCATGA+AGG | + | chr4.2:48170456-48170475 | MS.gene89988:CDS | 45.0% | |
!! | CAGGGTCTTTTGGGTCATTT+GGG | - | chr4.2:48169720-48169739 | None:intergenic | 45.0% |
!! | GGCTAGTTTGGTCTTGAGAA+GGG | - | chr4.2:48169954-48169973 | None:intergenic | 45.0% |
!! | GTCCCTTAGTCTTGATACCA+AGG | + | chr4.2:48169567-48169586 | MS.gene89988:CDS | 45.0% |
CCAAACTAGCCCTCATCCTT+TGG | + | chr4.2:48169963-48169982 | MS.gene89988:CDS | 50.0% | |
GGAATCAACTGCAATGGCGA+CGG | + | chr4.2:48169829-48169848 | MS.gene89988:CDS | 50.0% | |
! | AATTTCCGAAGGTGTGGGCT+TGG | - | chr4.2:48169614-48169633 | None:intergenic | 50.0% |
! | GCACTTGCTGAACTTGCAAG+TGG | + | chr4.2:48170084-48170103 | MS.gene89988:CDS | 50.0% |
!! | CACTCGGTGCATATGTTTGG+AGG | + | chr4.2:48170358-48170377 | MS.gene89988:CDS | 50.0% |
!! | CCAAAGGATGAGGGCTAGTT+TGG | - | chr4.2:48169966-48169985 | None:intergenic | 50.0% |
!! | GCAGGGTCTTTTGGGTCATT+TGG | - | chr4.2:48169721-48169740 | None:intergenic | 50.0% |
!! | GGGCTAGTTTGGTCTTGAGA+AGG | - | chr4.2:48169955-48169974 | None:intergenic | 50.0% |
TGGCGACGGAGTTCCATTCA+TGG | + | chr4.2:48169843-48169862 | MS.gene89988:CDS | 55.0% | |
ACCCTCCAAGCCCACACCTT+CGG | + | chr4.2:48169606-48169625 | MS.gene89988:CDS | 60.0% | |
! | TCCGAAGGTGTGGGCTTGGA+GGG | - | chr4.2:48169610-48169629 | None:intergenic | 60.0% |
! | TTCCGAAGGTGTGGGCTTGG+AGG | - | chr4.2:48169611-48169630 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 48169544 | 48170938 | 48169544 | ID=MS.gene89988 |
chr4.2 | mRNA | 48169544 | 48170938 | 48169544 | ID=MS.gene89988.t1;Parent=MS.gene89988 |
chr4.2 | exon | 48169544 | 48170938 | 48169544 | ID=MS.gene89988.t1.exon1;Parent=MS.gene89988.t1 |
chr4.2 | CDS | 48169544 | 48170938 | 48169544 | ID=cds.MS.gene89988.t1;Parent=MS.gene89988.t1 |
Gene Sequence |
Protein sequence |