Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143200 | sp|Q9LXJ1|BIC1_ARATH | 49.180 | 122 | 52 | 2 | 57 | 171 | 18 | 136 | 6.33e-31 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143200 | G7L635 | 95.322 | 171 | 6 | 1 | 1 | 169 | 1 | 171 | 1.17e-113 | 329 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0143200 | 0.809816 | 1.569317e-50 | -8.615850e-47 |
| Msa0002690 | Msa0143200 | 0.812736 | 3.648264e-51 | -8.615850e-47 |
| Msa0002700 | Msa0143200 | 0.812638 | 3.832885e-51 | -8.615850e-47 |
| Msa0007810 | Msa0143200 | 0.816807 | 4.570798e-52 | -8.615850e-47 |
| Msa0011410 | Msa0143200 | 0.812173 | 4.842690e-51 | -8.615850e-47 |
| Msa0011440 | Msa0143200 | 0.804657 | 1.944893e-49 | -8.615850e-47 |
| Msa0021570 | Msa0143200 | 0.807431 | 5.071025e-50 | -8.615850e-47 |
| Msa0056230 | Msa0143200 | 0.820408 | 6.968413e-53 | -8.615850e-47 |
| Msa0065670 | Msa0143200 | 0.807246 | 5.550455e-50 | -8.615850e-47 |
| Msa0069590 | Msa0143200 | 0.807677 | 4.496767e-50 | -8.615850e-47 |
| Msa0095810 | Msa0143200 | 0.810511 | 1.111589e-50 | -8.615850e-47 |
| Msa0098500 | Msa0143200 | 0.801494 | 8.767583e-49 | -8.615850e-47 |
| Msa0105140 | Msa0143200 | 0.813743 | 2.193176e-51 | -8.615850e-47 |
| Msa0111110 | Msa0143200 | 0.803178 | 3.946194e-49 | -8.615850e-47 |
| Msa0116780 | Msa0143200 | 0.823946 | 1.053517e-53 | -8.615850e-47 |
| Msa0143200 | Msa0151380 | 0.807671 | 4.510873e-50 | -8.615850e-47 |
| Msa0143200 | Msa0183960 | 0.806474 | 8.083324e-50 | -8.615850e-47 |
| Msa0143200 | Msa0190470 | 0.805539 | 1.271196e-49 | -8.615850e-47 |
| Msa0143200 | Msa0261350 | 0.800799 | 1.216537e-48 | -8.615850e-47 |
| Msa0143200 | Msa0299130 | 0.803446 | 3.472259e-49 | -8.615850e-47 |
| Msa0143200 | Msa0326170 | 0.800803 | 1.213977e-48 | -8.615850e-47 |
| Msa0143200 | Msa0331070 | 0.824932 | 6.172637e-54 | -8.615850e-47 |
| Msa0143200 | Msa0336550 | 0.809400 | 1.928178e-50 | -8.615850e-47 |
| Msa0143200 | Msa0337610 | 0.800940 | 1.138558e-48 | -8.615850e-47 |
| Msa0143200 | Msa0340700 | 0.817825 | 2.697680e-52 | -8.615850e-47 |
| Msa0143200 | Msa0368450 | 0.812013 | 5.248002e-51 | -8.615850e-47 |
| Msa0143200 | Msa0369080 | 0.801406 | 9.140851e-49 | -8.615850e-47 |
| Msa0143200 | Msa0375930 | 0.832473 | 9.267713e-56 | -8.615850e-47 |
| Msa0143200 | Msa0387630 | 0.807718 | 4.408897e-50 | -8.615850e-47 |
| Msa0143200 | Msa0424570 | 0.830256 | 3.253001e-55 | -8.615850e-47 |
| Msa0143200 | Msa0450890 | 0.810833 | 9.471631e-51 | -8.615850e-47 |
| Msa0143200 | Msa0460510 | 0.805831 | 1.104217e-49 | -8.615850e-47 |
| Msa0143200 | Msa0461620 | 0.812744 | 3.634161e-51 | -8.615850e-47 |
| Msa0143200 | Msa0463030 | 0.805967 | 1.033408e-49 | -8.615850e-47 |
| Msa0143200 | Msa0474120 | 0.800043 | 1.733987e-48 | -8.615850e-47 |
| Msa0143200 | Msa0474660 | 0.808961 | 2.394097e-50 | -8.615850e-47 |
| Msa0143200 | Msa0507960 | 0.803784 | 2.954393e-49 | -8.615850e-47 |
| Msa0143200 | Msa0516000 | 0.832086 | 1.155373e-55 | -8.615850e-47 |
| Msa0143200 | Msa0550980 | 0.819824 | 9.481106e-53 | -8.615850e-47 |
| Msa0143200 | Msa0550990 | 0.808377 | 3.190956e-50 | -8.615850e-47 |
| Msa0143200 | Msa0557440 | 0.802982 | 4.332164e-49 | -8.615850e-47 |
| Msa0143200 | Msa0559440 | 0.808809 | 2.580751e-50 | -8.615850e-47 |
| Msa0143200 | Msa0559640 | 0.812259 | 4.639832e-51 | -8.615850e-47 |
| Msa0143200 | Msa0580890 | 0.805203 | 1.494848e-49 | -8.615850e-47 |
| Msa0143200 | Msa0583270 | 0.806033 | 1.001113e-49 | -8.615850e-47 |
| Msa0143200 | Msa0606340 | 0.817953 | 2.523862e-52 | -8.615850e-47 |
| Msa0143200 | Msa0606350 | 0.818054 | 2.394412e-52 | -8.615850e-47 |
| Msa0143200 | Msa0622800 | 0.807411 | 5.121657e-50 | -8.615850e-47 |
| Msa0143200 | Msa0654400 | 0.815216 | 1.035505e-51 | -8.615850e-47 |
| Msa0143200 | Msa0654500 | 0.818863 | 1.569989e-52 | -8.615850e-47 |
| Msa0143200 | Msa0656570 | 0.801925 | 7.153063e-49 | -8.615850e-47 |
| Msa0143200 | Msa0676570 | 0.804016 | 2.644224e-49 | -8.615850e-47 |
| Msa0143200 | Msa0690100 | 0.821917 | 3.128013e-53 | -8.615850e-47 |
| Msa0143200 | Msa0745630 | 0.804089 | 2.553479e-49 | -8.615850e-47 |
| Msa0143200 | Msa0770540 | 0.802402 | 5.705570e-49 | -8.615850e-47 |
| Msa0143200 | Msa0794900 | 0.807038 | 6.143245e-50 | -8.615850e-47 |
| Msa0143200 | Msa0829250 | 0.807039 | 6.141328e-50 | -8.615850e-47 |
| Msa0143200 | Msa0869320 | 0.815990 | 6.963956e-52 | -8.615850e-47 |
| Msa0143200 | Msa0869420 | 0.806606 | 7.581578e-50 | -8.615850e-47 |
| Msa0143200 | Msa0934290 | 0.815641 | 8.330727e-52 | -8.615850e-47 |
| Msa0143200 | Msa0971780 | 0.818315 | 2.090402e-52 | -8.615850e-47 |
| Msa0143200 | Msa1002550 | 0.802401 | 5.708994e-49 | -8.615850e-47 |
| Msa0143200 | Msa1017610 | 0.809472 | 1.860865e-50 | -8.615850e-47 |
| Msa0143200 | Msa1039150 | 0.806489 | 8.025706e-50 | -8.615850e-47 |
| Msa0143200 | Msa1078280 | 0.802670 | 5.024529e-49 | -8.615850e-47 |
| Msa0143200 | Msa1117770 | 0.812394 | 4.335103e-51 | -8.615850e-47 |
| Msa0143200 | Msa1121720 | 0.801522 | 8.654382e-49 | -8.615850e-47 |
| Msa0143200 | Msa1123490 | 0.803076 | 4.141819e-49 | -8.615850e-47 |
| Msa0143200 | Msa1129120 | 0.810735 | 9.944161e-51 | -8.615850e-47 |
| Msa0143200 | Msa1130860 | 0.803741 | 3.015621e-49 | -8.615850e-47 |
| Msa0143200 | Msa1130920 | 0.808328 | 3.269160e-50 | -8.615850e-47 |
| Msa0143200 | Msa1169590 | 0.801574 | 8.442499e-49 | -8.615850e-47 |
| Msa0143200 | Msa1191530 | 0.812888 | 3.380328e-51 | -8.615850e-47 |
| Msa0143200 | Msa1194480 | 0.803346 | 3.642864e-49 | -8.615850e-47 |
| Msa0143200 | Msa1199540 | 0.829859 | 4.065134e-55 | -8.615850e-47 |
| Msa0143200 | Msa1199700 | 0.809213 | 2.114653e-50 | -8.615850e-47 |
| Msa0143200 | Msa1204900 | 0.801106 | 1.052747e-48 | -8.615850e-47 |
| Msa0143200 | Msa1212150 | 0.804613 | 1.986016e-49 | -8.615850e-47 |
| Msa0143200 | Msa1278080 | 0.811965 | 5.376381e-51 | -8.615850e-47 |
| Msa0143200 | Msa1279200 | 0.827246 | 1.739023e-54 | -8.615850e-47 |
| Msa0143200 | Msa1279250 | 0.817866 | 2.639929e-52 | -8.615850e-47 |
| Msa0143200 | Msa1292060 | 0.809815 | 1.570312e-50 | -8.615850e-47 |
| Msa0143200 | Msa1296810 | 0.801485 | 8.807415e-49 | -8.615850e-47 |
| Msa0143200 | Msa1305970 | 0.833901 | 4.085127e-56 | -8.615850e-47 |
| Msa0143200 | Msa1328680 | 0.826517 | 2.597802e-54 | -8.615850e-47 |
| Msa0143200 | Msa1332340 | 0.801747 | 7.781830e-49 | -8.615850e-47 |
| Msa0143200 | Msa1341710 | 0.802396 | 5.723849e-49 | -8.615850e-47 |
| Msa0143200 | Msa1356100 | 0.800150 | 1.649310e-48 | -8.615850e-47 |
| Msa0143200 | Msa1386180 | 0.862507 | 4.825671e-64 | -8.615850e-47 |
| Msa0143200 | Msa1386910 | 0.804902 | 1.727976e-49 | -8.615850e-47 |
| Msa0143200 | Msa1388720 | 0.810414 | 1.166586e-50 | -8.615850e-47 |
| Msa0143200 | Msa1389670 | 0.800797 | 1.217636e-48 | -8.615850e-47 |
| Msa0143200 | Msa1392570 | 0.803449 | 3.468018e-49 | -8.615850e-47 |
| Msa0143200 | Msa1408230 | 0.800613 | 1.327864e-48 | -8.615850e-47 |
| Msa0143200 | Msa1410480 | 0.814887 | 1.225175e-51 | -8.615850e-47 |
| Msa0143200 | Msa1410500 | 0.813991 | 1.933378e-51 | -8.615850e-47 |
| Msa0143200 | Msa1421520 | 0.802955 | 4.388093e-49 | -8.615850e-47 |
| Msa0143200 | Msa1424490 | 0.800176 | 1.629661e-48 | -8.615850e-47 |
| Msa0143200 | Msa1440140 | 0.802921 | 4.459981e-49 | -8.615850e-47 |
| Msa0143200 | Msa1451200 | 0.803510 | 3.367734e-49 | -8.615850e-47 |
| Msa0143200 | Msa1461840 | 0.800079 | 1.705524e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143200 | MtrunA17_Chr7g0266241 | 95.322 | 171 | 6 | 1 | 1 | 169 | 10 | 180 | 2.37e-117 | 330 |
| Msa0143200 | MtrunA17_Chr1g0178641 | 67.647 | 68 | 21 | 1 | 95 | 161 | 66 | 133 | 1.54e-27 | 100 |
| Msa0143200 | MtrunA17_Chr2g0321471 | 44.286 | 70 | 37 | 1 | 96 | 163 | 70 | 139 | 5.63e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143200 | AT3G52740.1 | 49.180 | 122 | 52 | 2 | 57 | 171 | 18 | 136 | 6.44e-32 | 112 |
| Msa0143200 | AT3G44450.1 | 58.182 | 55 | 23 | 0 | 100 | 154 | 39 | 93 | 7.12e-16 | 70.1 |
Find 38 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTTTATCATCATGGTTT+TGG | 0.183603 | 1_4:-2129635 | Msa0143190:three_prime_UTR |
| TCCTCTTGACCCCATATTTC+AGG | 0.201417 | 1_4:-2129852 | Msa0143190:three_prime_UTR |
| GAGTTTGGATTCCTGAAATA+TGG | 0.212739 | 1_4:+2129841 | Msa0143200:CDS |
| GATAGCTCCTGTTTCTTCTA+TGG | 0.252691 | 1_4:+2129719 | Msa0143200:CDS |
| TTGAAGTAGCTGGAAGAGTT+TGG | 0.294041 | 1_4:+2129826 | Msa0143200:CDS |
| CACTATGGCACGTGCTGCTT+TGG | 0.339934 | 1_4:+2129935 | Msa0143200:CDS |
| AGCAAAAGAGTTAACAACTA+TGG | 0.376017 | 1_4:+2129752 | Msa0143200:CDS |
| CACCTGTTGTGTATAGTTAG+AGG | 0.380745 | 1_4:-2129987 | Msa0143190:intron |
| CATCTTTATCTTTATCATCA+TGG | 0.388480 | 1_4:-2129641 | Msa0143190:three_prime_UTR |
| AAGAGGATTTATTGAAGGAT+TGG | 0.393645 | 1_4:+2129868 | Msa0143200:CDS |
| AGTTTGGATTCCTGAAATAT+GGG | 0.425242 | 1_4:+2129842 | Msa0143200:CDS |
| AGTTCCAAGCAAGATCACTA+TGG | 0.434204 | 1_4:+2129920 | Msa0143200:CDS |
| ACATCATCCATAGAAGAAAC+AGG | 0.460873 | 1_4:-2129726 | Msa0143190:three_prime_UTR |
| CTCCTCTAACTATACACAAC+AGG | 0.463941 | 1_4:+2129985 | Msa0143200:CDS |
| GGGTCAAGAGGATTTATTGA+AGG | 0.475977 | 1_4:+2129863 | Msa0143200:CDS |
| CAAGATTCCTTCACACCCAT+TGG | 0.482903 | 1_4:+2129530 | Msa0143200:CDS |
| GTGATCTTGCTTGGAACTAA+AGG | 0.483762 | 1_4:-2129915 | Msa0143190:three_prime_UTR |
| TCCTTGTTGCAAAGAAGAGA+TGG | 0.484001 | 1_4:-2129675 | Msa0143190:three_prime_UTR |
| AGGCATAGAGTTGAAGTAGC+TGG | 0.488896 | 1_4:+2129816 | Msa0143200:CDS |
| AACAACTATGGATGAAGTAT+TGG | 0.489801 | 1_4:+2129764 | Msa0143200:CDS |
| CTCATCTAAAGATGTCAACT+TGG | 0.490619 | 1_4:+2129569 | Msa0143200:CDS |
| CCTTGTTGCAAAGAAGAGAT+GGG | 0.508262 | 1_4:-2129674 | Msa0143190:three_prime_UTR |
| CATCAGATTCAACAGAGGAT+TGG | 0.517512 | 1_4:-2129506 | Msa0143190:three_prime_UTR |
| CGTGCCATAGTGATCTTGCT+TGG | 0.523167 | 1_4:-2129924 | Msa0143190:three_prime_UTR |
| TATAGTTAGAGGAGCAGCAT+TGG | 0.530992 | 1_4:-2129976 | Msa0143190:three_prime_UTR |
| CCCATCTCTTCTTTGCAACA+AGG | 0.533413 | 1_4:+2129674 | Msa0143200:CDS |
| TTTGAGTCCAATGGGTGTGA+AGG | 0.539347 | 1_4:-2129537 | Msa0143190:three_prime_UTR |
| GTTGACATCTTTAGATGAGT+GGG | 0.544029 | 1_4:-2129565 | Msa0143190:three_prime_UTR |
| GTGAAAGAGAGAGGCTGAAG+AGG | 0.548904 | 1_4:+2129796 | Msa0143200:CDS |
| TCCTGAAATATGGGGTCAAG+AGG | 0.551314 | 1_4:+2129851 | Msa0143200:CDS |
| TATGGATGAAGTATTGGAAG+AGG | 0.560016 | 1_4:+2129770 | Msa0143200:CDS |
| AGTTGACATCTTTAGATGAG+TGG | 0.576084 | 1_4:-2129566 | Msa0143190:three_prime_UTR |
| CGTGCTGCTTTGGTTGAAGA+GGG | 0.579273 | 1_4:+2129945 | Msa0143200:CDS |
| AAGAGGATAGTGAAAGAGAG+AGG | 0.580510 | 1_4:+2129787 | Msa0143200:CDS |
| ACGTGCTGCTTTGGTTGAAG+AGG | 0.593330 | 1_4:+2129944 | Msa0143200:CDS |
| TTGACATCTTTAGATGAGTG+GGG | 0.627794 | 1_4:-2129564 | Msa0143190:three_prime_UTR |
| GTTTGGATTCCTGAAATATG+GGG | 0.638334 | 1_4:+2129843 | Msa0143200:CDS |
| CTTGTCATCAGATTCAACAG+AGG | 0.696844 | 1_4:-2129511 | Msa0143190:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTTTATCATCATGGTTT+TGG | - | chr1_4:2129638-2129657 | Msa0143190:three_prime_UTR | 25.0% |
| ! | CATCTTTATCTTTATCATCA+TGG | - | chr1_4:2129644-2129663 | Msa0143190:three_prime_UTR | 25.0% |
| TTTGAGTGTTCAAAAAAGGA+GGG | - | chr1_4:2129611-2129630 | Msa0143190:three_prime_UTR | 30.0% | |
| !! | TTTTGAGTGTTCAAAAAAGG+AGG | - | chr1_4:2129612-2129631 | Msa0143190:three_prime_UTR | 30.0% |
| !!! | TCCTTTTTTGAACACTCAAA+AGG | + | chr1_4:2129611-2129630 | Msa0143200:CDS | 30.0% |
| !! | ACCTTTTGAGTGTTCAAAAA+AGG | - | chr1_4:2129615-2129634 | Msa0143190:three_prime_UTR | 30.0% |
| AGCAAAAGAGTTAACAACTA+TGG | + | chr1_4:2129752-2129771 | Msa0143200:CDS | 30.0% | |
| AACAACTATGGATGAAGTAT+TGG | + | chr1_4:2129764-2129783 | Msa0143200:CDS | 30.0% | |
| AGTTTGGATTCCTGAAATAT+GGG | + | chr1_4:2129842-2129861 | Msa0143200:CDS | 30.0% | |
| AAGAGGATTTATTGAAGGAT+TGG | + | chr1_4:2129868-2129887 | Msa0143200:CDS | 30.0% | |
| TTGACATCTTTAGATGAGTG+GGG | - | chr1_4:2129567-2129586 | Msa0143190:three_prime_UTR | 35.0% | |
| GTTGACATCTTTAGATGAGT+GGG | - | chr1_4:2129568-2129587 | Msa0143190:three_prime_UTR | 35.0% | |
| AGTTGACATCTTTAGATGAG+TGG | - | chr1_4:2129569-2129588 | Msa0143190:three_prime_UTR | 35.0% | |
| CTCATCTAAAGATGTCAACT+TGG | + | chr1_4:2129569-2129588 | Msa0143200:CDS | 35.0% | |
| ACATCATCCATAGAAGAAAC+AGG | - | chr1_4:2129729-2129748 | Msa0143190:three_prime_UTR | 35.0% | |
| !! | TATGGATGAAGTATTGGAAG+AGG | + | chr1_4:2129770-2129789 | Msa0143200:CDS | 35.0% |
| GAGTTTGGATTCCTGAAATA+TGG | + | chr1_4:2129841-2129860 | Msa0143200:CDS | 35.0% | |
| GTTTGGATTCCTGAAATATG+GGG | + | chr1_4:2129843-2129862 | Msa0143200:CDS | 35.0% | |
| CATCAGATTCAACAGAGGAT+TGG | - | chr1_4:2129509-2129528 | Msa0143190:three_prime_UTR | 40.0% | |
| CTTGTCATCAGATTCAACAG+AGG | - | chr1_4:2129514-2129533 | Msa0143190:three_prime_UTR | 40.0% | |
| !!! | GGGGTTTTTTTGAGTCCAAT+GGG | - | chr1_4:2129548-2129567 | Msa0143190:three_prime_UTR | 40.0% |
| !!! | TGGGGTTTTTTTGAGTCCAA+TGG | - | chr1_4:2129549-2129568 | Msa0143190:three_prime_UTR | 40.0% |
| CCTTGTTGCAAAGAAGAGAT+GGG | - | chr1_4:2129677-2129696 | Msa0143190:three_prime_UTR | 40.0% | |
| TCCTTGTTGCAAAGAAGAGA+TGG | - | chr1_4:2129678-2129697 | Msa0143190:three_prime_UTR | 40.0% | |
| ! | GATAGCTCCTGTTTCTTCTA+TGG | + | chr1_4:2129719-2129738 | Msa0143200:CDS | 40.0% |
| AAGAGGATAGTGAAAGAGAG+AGG | + | chr1_4:2129787-2129806 | Msa0143200:CDS | 40.0% | |
| TTGAAGTAGCTGGAAGAGTT+TGG | + | chr1_4:2129826-2129845 | Msa0143200:CDS | 40.0% | |
| GGGTCAAGAGGATTTATTGA+AGG | + | chr1_4:2129863-2129882 | Msa0143200:CDS | 40.0% | |
| GTGATCTTGCTTGGAACTAA+AGG | - | chr1_4:2129918-2129937 | Msa0143190:three_prime_UTR | 40.0% | |
| AGTTCCAAGCAAGATCACTA+TGG | + | chr1_4:2129920-2129939 | Msa0143200:CDS | 40.0% | |
| TATAGTTAGAGGAGCAGCAT+TGG | - | chr1_4:2129979-2129998 | Msa0143190:three_prime_UTR | 40.0% | |
| CTCCTCTAACTATACACAAC+AGG | + | chr1_4:2129985-2130004 | Msa0143200:CDS | 40.0% | |
| CACCTGTTGTGTATAGTTAG+AGG | - | chr1_4:2129990-2130009 | Msa0143190:intron | 40.0% | |
| CAAGATTCCTTCACACCCAT+TGG | + | chr1_4:2129530-2129549 | Msa0143200:CDS | 45.0% | |
| TTTGAGTCCAATGGGTGTGA+AGG | - | chr1_4:2129540-2129559 | Msa0143190:three_prime_UTR | 45.0% | |
| CCCATCTCTTCTTTGCAACA+AGG | + | chr1_4:2129674-2129693 | Msa0143200:CDS | 45.0% | |
| AGGCATAGAGTTGAAGTAGC+TGG | + | chr1_4:2129816-2129835 | Msa0143200:CDS | 45.0% | |
| TCCTGAAATATGGGGTCAAG+AGG | + | chr1_4:2129851-2129870 | Msa0143200:CDS | 45.0% | |
| TCCTCTTGACCCCATATTTC+AGG | - | chr1_4:2129855-2129874 | Msa0143190:three_prime_UTR | 45.0% | |
| GTGAAAGAGAGAGGCTGAAG+AGG | + | chr1_4:2129796-2129815 | Msa0143200:CDS | 50.0% | |
| CGTGCCATAGTGATCTTGCT+TGG | - | chr1_4:2129927-2129946 | Msa0143190:three_prime_UTR | 50.0% | |
| !! | ACGTGCTGCTTTGGTTGAAG+AGG | + | chr1_4:2129944-2129963 | Msa0143200:CDS | 50.0% |
| !! | CGTGCTGCTTTGGTTGAAGA+GGG | + | chr1_4:2129945-2129964 | Msa0143200:CDS | 50.0% |
| !! | CACTATGGCACGTGCTGCTT+TGG | + | chr1_4:2129935-2129954 | Msa0143200:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 2129498 | 2130013 | 2129498 | ID=Msa0143200;Name=Msa0143200 |
| chr1_4 | mRNA | 2129498 | 2130013 | 2129498 | ID=Msa0143200-mRNA-1;Parent=Msa0143200;Name=Msa0143200-mRNA-1;_AED=0.37;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|171 |
| chr1_4 | exon | 2129498 | 2130013 | 2129498 | ID=Msa0143200-mRNA-1:exon:848;Parent=Msa0143200-mRNA-1 |
| chr1_4 | CDS | 2129498 | 2130013 | 2129498 | ID=Msa0143200-mRNA-1:cds;Parent=Msa0143200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
