AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0337610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337610 MtrunA17_Chr2g0324891 98.349 424 6 1 1 423 1 424 0.0 856
Msa0337610 MtrunA17_Chr4g0040481 60.899 445 126 18 1 421 1 421 1.64e-148 428
Msa0337610 MtrunA17_Chr5g0400241 36.194 268 126 8 154 416 305 532 1.73e-41 154
Msa0337610 MtrunA17_Chr4g0054981 32.286 350 182 14 91 421 235 548 7.71e-41 152
Msa0337610 MtrunA17_Chr3g0137101 50.000 74 37 0 154 227 192 265 1.72e-17 84.7
Msa0337610 MtrunA17_Chr2g0304841 37.190 121 72 2 155 274 208 325 4.80e-17 83.6
Msa0337610 MtrunA17_Chr1g0161431 56.061 66 29 0 153 218 193 258 2.15e-16 81.3
Msa0337610 MtrunA17_Chr4g0067981 45.977 87 45 1 159 243 214 300 3.48e-16 80.9
Msa0337610 MtrunA17_Chr4g0009851 39.362 94 54 2 124 216 134 225 1.07e-15 77.4
Msa0337610 MtrunA17_Chr1g0149841 53.030 66 31 0 157 222 188 253 1.27e-15 78.6
Msa0337610 MtrunA17_Chr7g0255711 51.667 60 29 0 159 218 90 149 4.69e-15 75.5
Msa0337610 MtrunA17_Chr4g0009981 44.000 75 40 1 142 216 100 172 1.46e-14 73.6
Msa0337610 MtrunA17_Chr4g0009901 43.678 87 44 1 130 216 143 224 2.30e-14 73.2
Msa0337610 MtrunA17_Chr4g0031961 43.038 79 43 1 159 237 130 206 3.33e-14 73.2
Msa0337610 MtrunA17_Chr2g0294911 53.333 60 28 0 159 218 210 269 3.60e-14 74.3
Msa0337610 MtrunA17_Chr8g0376881 46.377 69 37 0 159 227 208 276 1.01e-13 72.8
Msa0337610 MtrunA17_Chr7g0275891 33.571 140 71 5 155 275 186 322 2.53e-13 70.9
Msa0337610 MtrunA17_Chr4g0074411 34.247 146 81 5 109 242 140 282 6.77e-13 70.5
Msa0337610 MtrunA17_Chr4g0074401 50.909 55 27 0 158 212 201 255 8.65e-13 70.1
Msa0337610 MtrunA17_Chr3g0123131 43.662 71 40 0 159 229 198 268 1.03e-12 69.7
Msa0337610 MtrunA17_Chr3g0134481 51.064 47 23 0 165 211 137 183 3.67e-12 65.1
Msa0337610 MtrunA17_Chr6g0461641 54.545 55 24 1 162 215 44 98 4.48e-12 67.4
Msa0337610 MtrunA17_Chr6g0473731 45.205 73 39 1 159 231 94 165 6.76e-12 67.0
Msa0337610 MtrunA17_Chr4g0062921 43.056 72 40 1 146 216 221 292 7.26e-12 67.0
Msa0337610 MtrunA17_Chr1g0198601 50.000 60 29 1 158 216 209 268 7.42e-12 66.6
Msa0337610 MtrunA17_Chr5g0422621 35.922 103 58 2 122 216 153 255 1.12e-11 65.9
Msa0337610 MtrunA17_Chr7g0275401 50.000 58 29 0 159 216 191 248 1.19e-11 65.1
Msa0337610 MtrunA17_Chr2g0321461 53.846 52 23 1 162 212 47 98 2.19e-11 65.1
Msa0337610 MtrunA17_Chr4g0074421 31.944 144 58 5 106 209 39 182 2.61e-11 62.8
Msa0337610 MtrunA17_Chr4g0045361 49.180 61 30 1 159 218 273 333 3.09e-11 64.7
Msa0337610 MtrunA17_Chr3g0134461 49.057 53 27 0 157 209 140 192 4.14e-11 62.0
Msa0337610 MtrunA17_Chr1g0149831 45.455 66 33 1 157 222 125 187 4.17e-11 62.8
Msa0337610 MtrunA17_Chr4g0009991 44.118 68 36 1 142 209 51 116 4.85e-11 60.1
Msa0337610 MtrunA17_Chr1g0190301 49.153 59 29 1 158 215 173 231 5.06e-11 63.9
Msa0337610 MtrunA17_Chr2g0291021 53.704 54 24 1 160 212 49 102 5.09e-11 63.5
Msa0337610 MtrunA17_Chr5g0417521 53.846 52 23 1 162 212 17 68 6.23e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337610 AT2G20570.1 48.985 394 143 14 56 423 59 420 4.98e-93 286
Msa0337610 AT2G20570.2 47.073 410 143 15 56 423 59 436 7.64e-89 276
Msa0337610 AT5G44190.1 42.754 414 147 16 28 420 40 384 8.00e-74 236
Msa0337610 AT5G44190.2 41.796 323 113 13 28 329 40 308 6.53e-59 196
Msa0337610 AT2G20570.3 38.579 394 137 15 56 423 59 373 1.88e-49 172
Msa0337610 AT4G18020.3 32.812 384 194 12 60 421 183 524 1.20e-34 135
Msa0337610 AT4G18020.2 32.812 384 194 12 60 421 183 524 1.20e-34 135
Msa0337610 AT4G18020.1 32.812 384 194 12 60 421 183 524 1.20e-34 135
Msa0337610 AT4G18020.6 32.812 384 194 12 60 421 183 524 1.20e-34 135
Msa0337610 AT4G18020.9 32.812 384 194 12 60 421 183 524 1.20e-34 135
Msa0337610 AT4G18020.8 31.498 327 170 11 60 364 183 477 9.65e-31 124
Msa0337610 AT4G18020.11 31.498 327 170 11 60 364 183 477 9.65e-31 124
Msa0337610 AT4G18020.4 31.498 327 170 11 60 364 183 477 9.65e-31 124
Msa0337610 AT4G18020.5 31.498 327 170 11 60 364 183 477 9.65e-31 124
Msa0337610 AT4G18020.10 31.498 327 170 11 60 364 183 477 9.65e-31 124
Msa0337610 AT4G18020.7 31.498 327 170 11 60 364 183 477 9.65e-31 124
Msa0337610 AT5G59570.2 35.333 150 82 3 100 235 68 216 1.02e-18 86.7
Msa0337610 AT5G59570.1 35.333 150 82 3 100 235 68 216 1.02e-18 86.7
Msa0337610 AT5G58080.1 52.113 71 34 0 148 218 182 252 7.53e-17 83.2
Msa0337610 AT2G01760.3 54.688 64 29 0 155 218 130 193 7.66e-16 78.6
Msa0337610 AT4G31920.1 40.426 94 53 1 153 243 176 269 8.58e-16 79.7
Msa0337610 AT3G16857.3 46.250 80 43 0 139 218 146 225 9.69e-16 79.7
Msa0337610 AT3G16857.2 46.250 80 43 0 139 218 216 295 1.14e-15 79.7
Msa0337610 AT3G16857.1 46.250 80 43 0 139 218 216 295 1.33e-15 79.3
Msa0337610 AT2G01760.1 54.688 64 29 0 155 218 195 258 1.38e-15 78.6
Msa0337610 AT2G01760.2 54.688 64 29 0 155 218 223 286 1.68e-15 78.2
Msa0337610 AT3G10760.1 51.667 60 29 0 159 218 104 163 1.82e-15 77.4
Msa0337610 AT5G05090.1 51.667 60 29 0 159 218 80 139 2.30e-15 76.3
Msa0337610 AT2G25180.1 41.860 86 50 0 158 243 193 278 3.23e-15 78.2
Msa0337610 AT3G46640.2 32.258 155 83 4 84 231 76 215 4.48e-15 76.3
Msa0337610 AT3G46640.1 32.258 155 83 4 84 231 76 215 4.48e-15 76.3
Msa0337610 AT3G46640.3 32.258 155 83 4 84 231 76 215 1.23e-14 75.1
Msa0337610 AT5G07210.2 49.296 71 32 1 159 229 221 287 4.75e-14 74.7
Msa0337610 AT2G40970.1 50.877 57 28 0 162 218 107 163 4.80e-14 72.0
Msa0337610 AT5G07210.1 49.296 71 32 1 159 229 229 295 4.80e-14 74.7
Msa0337610 AT1G68670.1 36.508 126 68 4 137 260 193 308 1.22e-12 69.3
Msa0337610 AT1G13300.1 39.796 98 55 3 120 216 144 238 2.23e-12 68.2
Msa0337610 AT4G28610.1 46.377 69 36 1 148 215 213 281 3.45e-12 68.2
Msa0337610 AT2G03500.1 47.887 71 32 2 147 216 224 290 5.38e-12 67.8
Msa0337610 AT3G04030.1 55.556 54 23 1 160 212 45 98 5.75e-12 67.4
Msa0337610 AT2G27070.1 49.180 61 31 0 159 219 224 284 5.97e-12 67.8
Msa0337610 AT3G04030.3 55.769 52 22 1 162 212 47 98 6.56e-12 67.4
Msa0337610 AT5G18240.2 57.407 54 22 1 160 212 45 98 7.92e-12 67.0
Msa0337610 AT5G18240.3 57.407 54 22 1 160 212 45 98 7.92e-12 67.0
Msa0337610 AT3G62670.1 42.353 85 44 2 137 216 188 272 8.40e-12 67.0
Msa0337610 AT5G18240.5 57.407 54 22 1 160 212 45 98 8.56e-12 67.0
Msa0337610 AT5G18240.1 57.407 54 22 1 160 212 45 98 9.35e-12 67.0
Msa0337610 AT5G18240.4 57.407 54 22 1 160 212 45 98 9.35e-12 67.0
Msa0337610 AT1G25550.1 44.118 68 37 1 150 216 199 266 2.37e-11 65.1
Msa0337610 AT1G67710.2 53.448 58 26 1 162 218 130 187 2.90e-11 65.5
Msa0337610 AT1G67710.3 53.448 58 26 1 162 218 121 178 3.00e-11 65.5
Msa0337610 AT1G67710.1 53.448 58 26 1 162 218 195 252 3.83e-11 65.5
Msa0337610 AT2G01060.1 49.180 61 29 2 153 212 9 68 3.90e-11 63.9
Msa0337610 AT3G04030.2 50.980 51 25 0 162 212 47 97 9.31e-11 63.5

Find 228 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAAACTAAACCTTAAT+TGG 0.067573 2_4:+57661257 Msa0337610:five_prime_UTR
GGCTGTACCTTCAAGAATTT+TGG 0.101691 2_4:+57663073 Msa0337610:CDS
TATCATTTGCATATTGTAAA+TGG 0.134290 2_4:-57666797 None:intergenic
AAATTCCCTTTAATTAATTT+AGG 0.140272 2_4:-57666746 None:intergenic
TTCTCCAAGAATAGTTTAAT+TGG 0.158467 2_4:+57666912 Msa0337610:three_prime_UTR
TTCTCCAAGAAAAGGTTAAT+TGG 0.175625 2_4:+57666557 Msa0337610:three_prime_UTR
TCTTTCTGAAGGGAACTTAT+TGG 0.187055 2_4:+57661660 Msa0337610:CDS
CTTCAAGTGCTGGAGCTTTA+AGG 0.188281 2_4:-57665368 None:intergenic
CTCACCAGCCACCGGCTAAC+TGG 0.194568 2_4:+57663704 Msa0337610:CDS
TATCATCTCTATATTGTAAA+TGG 0.199349 2_4:-57666437 None:intergenic
ACGAATCTTCTGTGCAATTC+TGG 0.206442 2_4:-57663020 None:intergenic
GCACAAGATGGTGGAATATT+TGG 0.207126 2_4:-57665423 None:intergenic
GTAGTTTCTTCTTCAGATTC+TGG 0.217213 2_4:+57661895 Msa0337610:CDS
ATATGAAAATTCGTCGAATT+AGG 0.217599 2_4:-57665493 None:intergenic
GAGAATTCAGCAAGCATTTC+CGG 0.225150 2_4:-57661763 None:intergenic
TCCTTAATGGACTTTGAAAA+TGG 0.246047 2_4:-57661211 None:intergenic
TCCCTTGCCGCTTCCTAAAA+AGG 0.249720 2_4:+57661180 Msa0337610:five_prime_UTR
TGAGGCCCTAAATTAATTAA+AGG 0.259435 2_4:+57666740 Msa0337610:three_prime_UTR
AATTCCCTTTAATTAATTTA+GGG 0.261718 2_4:-57666745 None:intergenic
TATGGATATCCTGTCATTAT+TGG 0.263579 2_4:+57666600 Msa0337610:three_prime_UTR
GATGATAATAATATGCTTAA+TGG 0.269874 2_4:+57666453 Msa0337610:three_prime_UTR
ATGACATTGTTAGGATTATA+AGG 0.270439 2_4:+57665670 Msa0337610:three_prime_UTR
AAAAGTAGAGATCTTGGATT+TGG 0.271356 2_4:+57666195 Msa0337610:three_prime_UTR
AAAATCTATGTAAACTATAT+AGG 0.277657 2_4:-57666386 None:intergenic
GGAACTAGTGCTCTCCTTAA+TGG 0.279221 2_4:-57661224 None:intergenic
GCTAGCATGATAATCCTATT+TGG 0.284706 2_4:-57661553 None:intergenic
AATCATTGATCCTACAAGTA+TGG 0.288203 2_4:+57666073 Msa0337610:three_prime_UTR
ATGATAATAATATGCTTAAT+GGG 0.297319 2_4:+57666454 Msa0337610:three_prime_UTR
TGCCATGTGTGGACAAATTT+AGG 0.298411 2_4:+57666835 Msa0337610:three_prime_UTR
ATGCGAAATATGACATTGTT+AGG 0.298666 2_4:+57665661 Msa0337610:three_prime_UTR
AATCAAGAAACTAGCCAAAT+AGG 0.299124 2_4:+57661539 Msa0337610:five_prime_UTR
AGGTTTGAAGAAAATTTAAT+AGG 0.299976 2_4:-57665859 None:intergenic
AATTCTCCTCCATTTCTCTT+TGG 0.309622 2_4:-57661609 None:intergenic
CGACAGCACCGGGATCTAAT+TGG 0.311120 2_4:-57664773 None:intergenic
TATGAAAATTCGTCGAATTA+GGG 0.311470 2_4:-57665492 None:intergenic
GTTCCTGCAGTTGGTGCATT+TGG 0.315113 2_4:-57664462 None:intergenic
AAAGAGATATTGTGAATCAT+TGG 0.319597 2_4:+57663563 Msa0337610:CDS
ATACATGTAAAGGTCTAAAA+TGG 0.320147 2_4:-57663627 None:intergenic
TCTCCAAGAAAAGGTTAATT+GGG 0.322422 2_4:+57666558 Msa0337610:three_prime_UTR
CCAAGAGGCAACGGTAAATA+TGG 0.326100 2_4:-57665345 None:intergenic
AAATCTATGTAAACTATATA+GGG 0.328882 2_4:-57666385 None:intergenic
TCTCCAAGAATAGTTTAATT+GGG 0.329430 2_4:+57666913 Msa0337610:three_prime_UTR
AGAATAGTATATAATATATT+AGG 0.340543 2_4:-57661009 None:intergenic
ATCTTGTAATGATGGGAATA+TGG 0.342028 2_4:+57661837 Msa0337610:CDS
ATTCATAGAGGGCTCAAATA+AGG 0.345907 2_4:+57666652 Msa0337610:three_prime_UTR
ATTTGGCTCTCCAACCGTTC+CGG 0.346150 2_4:+57664725 Msa0337610:CDS
TGGTGTTTCGAGCTCACTTT+AGG 0.347235 2_4:+57666519 Msa0337610:three_prime_UTR
GACCTCATATTCTCAACATT+TGG 0.353132 2_4:-57666480 None:intergenic
GAAATATGCGAATAAATTCT+TGG 0.358910 2_4:-57665986 None:intergenic
GATTATACAATGAGGATGTT+TGG 0.359140 2_4:+57666162 Msa0337610:three_prime_UTR
CTTCCTTTCTCACCTTCCTT+AGG 0.364182 2_4:-57661979 None:intergenic
CGAATCTTCTGTGCAATTCT+GGG 0.366108 2_4:-57663019 None:intergenic
TTTGGCTCTCCAACCGTTCC+GGG 0.371933 2_4:+57664726 Msa0337610:CDS
TACTATAAAATGCAGAGATT+TGG 0.372430 2_4:+57664708 Msa0337610:intron
GACCATCTCACGCTCTTTCA+TGG 0.373796 2_4:+57666313 Msa0337610:three_prime_UTR
ATGAAATTTGAAAGGTGTAA+TGG 0.375705 2_4:-57660892 None:intergenic
GGAAGCGGCAAGGGAGTGTT+TGG 0.376181 2_4:-57661172 None:intergenic
GACGGTAAAAGTAGAGATCT+TGG 0.382908 2_4:+57666189 Msa0337610:three_prime_UTR
GGCTGGTGAGGCGAATATTT+AGG 0.392643 2_4:-57663691 None:intergenic
CGCGCAGGTGCCCAGTTAGC+CGG 0.396067 2_4:-57663715 None:intergenic
GAGGCCCTAAATTAATTAAA+GGG 0.400320 2_4:+57666741 Msa0337610:three_prime_UTR
AATAGCAAATCTTGTAATGA+TGG 0.402167 2_4:+57661829 Msa0337610:CDS
TTGATGAAAGCCGATTGATT+TGG 0.413035 2_4:-57666010 None:intergenic
AAAAGTAGAGAAGTAGCTAT+TGG 0.415038 2_4:+57666031 Msa0337610:three_prime_UTR
GCATGGGGTGGTGGAATGCC+CGG 0.416738 2_4:-57664744 None:intergenic
GGAGGTGGAGCCGGCCGCGC+AGG 0.417257 2_4:-57663730 None:intergenic
TCACTCACTCCCATACTTGT+AGG 0.418876 2_4:-57666083 None:intergenic
TTCTCACCTTCCTTAGGCAA+TGG 0.418890 2_4:-57661973 None:intergenic
ATCATTTGCATATTGTAAAT+GGG 0.420434 2_4:-57666796 None:intergenic
ATAATTTCCAAAATTCTTGA+AGG 0.422640 2_4:-57663080 None:intergenic
ATTGTAAATGGACGATCATC+AGG 0.422811 2_4:-57666425 None:intergenic
TGGTACATGGCATGGGGTGG+TGG 0.423225 2_4:-57664753 None:intergenic
TTTGGAACAAATAGAGGAGT+TGG 0.424569 2_4:+57663535 Msa0337610:CDS
AGATGAAAGCCAAAGAGAAA+TGG 0.427037 2_4:+57661600 Msa0337610:CDS
CCTCAGCAGCGGTGAGGAAT+CGG 0.431327 2_4:+57661786 Msa0337610:CDS
AGAATTCAGCAAGCATTTCC+GGG 0.434761 2_4:-57661762 None:intergenic
CTTCAAACCTAAAATTGTCT+TGG 0.437574 2_4:+57665872 Msa0337610:three_prime_UTR
CGCTTCGTATTGGCACCAAC+GGG 0.437762 2_4:+57663756 Msa0337610:CDS
TGAGGAGATGGTTGACCGGC+GGG 0.442250 2_4:-57664798 None:intergenic
CCATATTTACCGTTGCCTCT+TGG 0.442998 2_4:+57665345 Msa0337610:CDS
AGTCAAAGGAGGCAATTGTT+TGG 0.445411 2_4:+57663517 Msa0337610:CDS
AAGAGATATTGTGAATCATT+GGG 0.445666 2_4:+57663564 Msa0337610:CDS
CCTTCCTTAGGCAATGGATT+CGG 0.447175 2_4:-57661967 None:intergenic
CCACCATCTTGTGCTTGAAA+AGG 0.447432 2_4:+57665432 Msa0337610:exon
TAACTGGGCACCTGCGCGGC+CGG 0.450504 2_4:+57663720 Msa0337610:CDS
GAAGGTGGCTGGCGATGTTA+TGG 0.452271 2_4:-57663124 None:intergenic
AGAGCAGCTAGGTGTGGATA+AGG 0.452338 2_4:+57663052 Msa0337610:CDS
CAATTGTTTGGAACAAATAG+AGG 0.452627 2_4:+57663529 Msa0337610:CDS
GGTCTTTGATGAAAATCATT+TGG 0.453496 2_4:+57666499 Msa0337610:three_prime_UTR
ATCTAATTGGTACATGGCAT+GGG 0.454562 2_4:-57664760 None:intergenic
ATTGGTGAATGAGAACTCTA+TGG 0.456123 2_4:+57666618 Msa0337610:three_prime_UTR
GCATATTTCTCCAAATCAAT+CGG 0.456128 2_4:+57666000 Msa0337610:three_prime_UTR
TCTTGGAGAAATTAACTCTC+AGG 0.457979 2_4:-57666899 None:intergenic
GTGCCCAGTTAGCCGGTGGC+TGG 0.461785 2_4:-57663708 None:intergenic
GGATATCCATACAAGAAAAC+AGG 0.467906 2_4:-57666588 None:intergenic
GGTCTTTGATGACAATCCTC+TGG 0.467933 2_4:+57666856 Msa0337610:three_prime_UTR
CTTAAAGCTCCAGCACTTGA+AGG 0.470221 2_4:+57665369 Msa0337610:CDS
AAATATGCGAATAAATTCTT+GGG 0.470789 2_4:-57665985 None:intergenic
AAAGTAGAGATCTTGGATTT+GGG 0.471575 2_4:+57666196 Msa0337610:three_prime_UTR
CTCATTAATATCATCTTCCT+CGG 0.472160 2_4:-57665711 None:intergenic
AAGAAAACTAAACCTTAATT+GGG 0.474016 2_4:+57661258 Msa0337610:five_prime_UTR
CAACGACGGAGATGTGTTAC+CGG 0.474780 2_4:+57661726 Msa0337610:CDS
ACCGTTGTTGTCAGAGGCTG+TGG 0.475841 2_4:-57664495 None:intergenic
ATGAAGGTAAATATTCAAAG+AGG 0.484530 2_4:+57666277 Msa0337610:three_prime_UTR
GATTTAATTTCTCCAAGAAA+AGG 0.484632 2_4:+57666549 Msa0337610:three_prime_UTR
AAGCAGCAAGCTGGAGTCAA+AGG 0.486273 2_4:+57663503 Msa0337610:CDS
TCTAAGAGAGGCTGAGGAGA+TGG 0.487017 2_4:-57664810 None:intergenic
GGTGGAATGCCCGGAACGGT+TGG 0.487870 2_4:-57664735 None:intergenic
GTTGTGTAAATTAGGTGGAT+TGG 0.489509 2_4:+57662994 Msa0337610:intron
TCACCAGCCACCGGCTAACT+GGG 0.495747 2_4:+57663705 Msa0337610:CDS
TCCGGGTCCATCTCAAGATC+CGG 0.498896 2_4:-57661745 None:intergenic
ATTCAAAGAGGGCTCAAGTA+AGG 0.499377 2_4:+57666289 Msa0337610:three_prime_UTR
CCCATCACACCTTCAAGTGC+TGG 0.500993 2_4:-57665378 None:intergenic
GGAGGTTGAGTCGCTTGATA+AGG 0.501127 2_4:+57666712 Msa0337610:three_prime_UTR
TGGCGATGTTATGGCGGGTG+AGG 0.501153 2_4:-57663115 None:intergenic
GAATCGGATATAAATTCATC+AGG 0.503029 2_4:+57661802 Msa0337610:CDS
TGCATAAACGACTGATCCAC+GGG 0.503874 2_4:-57663661 None:intergenic
TCATCTCTTATGCTACTCAA+TGG 0.503989 2_4:-57661583 None:intergenic
AGCCAAATGTTGAGAATATG+AGG 0.504125 2_4:+57666478 Msa0337610:three_prime_UTR
AATATATACTTGAAGGTGGC+TGG 0.504816 2_4:-57663135 None:intergenic
GTGAAGCTGAAGCAGCAAGC+TGG 0.505371 2_4:+57663494 Msa0337610:CDS
CATTGGGTTGCACCAACCAT+GGG 0.506502 2_4:+57663580 Msa0337610:CDS
CTCCAAGAATAGTTTAATTG+GGG 0.507075 2_4:+57666914 Msa0337610:three_prime_UTR
TGGTGTACTGGTGGCATGGG+AGG 0.508769 2_4:-57663607 None:intergenic
ATCATTGATCCTACAAGTAT+GGG 0.511311 2_4:+57666074 Msa0337610:three_prime_UTR
ATTGATTAATGAAATTTGAA+AGG 0.512527 2_4:-57660900 None:intergenic
TGGAAGTCTAAGAGAGGCTG+AGG 0.512815 2_4:-57664816 None:intergenic
CAATCAAAGAATAACCCTCA+TGG 0.515207 2_4:+57662015 Msa0337610:CDS
TTGCCTAAGGAAGGTGAGAA+AGG 0.515531 2_4:+57661976 Msa0337610:CDS
TGGTGCCAATACGAAGCGTT+AGG 0.516711 2_4:-57663751 None:intergenic
TTTGGAAGAAGAAACTAGCT+TGG 0.516864 2_4:-57661154 None:intergenic
CGATTCCTCACCGCTGCTGA+GGG 0.520384 2_4:-57661785 None:intergenic
CAGTTAGCCGGTGGCTGGTG+AGG 0.522621 2_4:-57663703 None:intergenic
GACTTTGCTGATCTTTCTGA+AGG 0.529725 2_4:+57661649 Msa0337610:CDS
AGATTCTGGTTCGAGTCGTG+TGG 0.530001 2_4:+57661909 Msa0337610:CDS
AGGCTGAGGAGATGGTTGAC+CGG 0.530628 2_4:-57664802 None:intergenic
TCATTGGGTTGCACCAACCA+TGG 0.531353 2_4:+57663579 Msa0337610:CDS
ACCGGCGGGGACGACAGCAC+CGG 0.531481 2_4:-57664784 None:intergenic
CACCTCCTAACGCTTCGTAT+TGG 0.533276 2_4:+57663746 Msa0337610:CDS
CCCGGTGCTGTCGTCCCCGC+CGG 0.535340 2_4:+57664783 Msa0337610:CDS
GATCTAATTGGTACATGGCA+TGG 0.535864 2_4:-57664761 None:intergenic
GGAACAAATAGAGGAGTTGG+AGG 0.536832 2_4:+57663538 Msa0337610:CDS
TGTTGGTCTACTAGACGGTA+TGG 0.537021 2_4:-57665588 None:intergenic
ATAGCAAATCTTGTAATGAT+GGG 0.538050 2_4:+57661830 Msa0337610:CDS
GAGGATGTAAATATTCATAG+AGG 0.540114 2_4:+57666640 Msa0337610:three_prime_UTR
TTACATGCTAGCTAGTAGCT+AGG 0.540287 2_4:-57661306 None:intergenic
CCGGCGGGGACGACAGCACC+GGG 0.542874 2_4:-57664783 None:intergenic
TATATAATATATTAGGCTTG+TGG 0.543869 2_4:-57661002 None:intergenic
TAATGAGAACTCTACAATGA+AGG 0.544426 2_4:+57666261 Msa0337610:three_prime_UTR
GAAGCGTTAGGAGGTGGAGC+CGG 0.546304 2_4:-57663739 None:intergenic
TTCTTCGTATGCTTCAACGA+CGG 0.547987 2_4:+57661712 Msa0337610:CDS
GTGGCTGGCGATGTTATGGC+GGG 0.549108 2_4:-57663120 None:intergenic
CTCCAAGAAAAGGTTAATTG+GGG 0.549169 2_4:+57666559 Msa0337610:three_prime_UTR
TCTCATTCACCAATAATGAC+AGG 0.550034 2_4:-57666609 None:intergenic
ATGGGAGGGAAACCCATGGT+TGG 0.554944 2_4:-57663592 None:intergenic
TATGGATATCATGTTAGTGT+TGG 0.556844 2_4:+57666237 Msa0337610:three_prime_UTR
AAAGGTCTAAAATGGTGTAC+TGG 0.559020 2_4:-57663619 None:intergenic
AAATGGTGTACTGGTGGCAT+GGG 0.560870 2_4:-57663610 None:intergenic
TACATGCTAGCTAGTAGCTA+GGG 0.561312 2_4:-57661305 None:intergenic
AATCAAAGAATAACCCTCAT+GGG 0.562864 2_4:+57662016 Msa0337610:CDS
CAATACGAAGCGTTAGGAGG+TGG 0.565122 2_4:-57663745 None:intergenic
GGTGGCTGGCGATGTTATGG+CGG 0.567885 2_4:-57663121 None:intergenic
CTGAGGAGATGGTTGACCGG+CGG 0.568454 2_4:-57664799 None:intergenic
GGTGTACTGGTGGCATGGGA+GGG 0.568499 2_4:-57663606 None:intergenic
TCCAGCACTTGAAGGTGTGA+TGG 0.569286 2_4:+57665377 Msa0337610:CDS
GCTCCAAATGCACCAACTGC+AGG 0.571552 2_4:+57664459 Msa0337610:CDS
CCGATTCCTCACCGCTGCTG+AGG 0.572056 2_4:-57661786 None:intergenic
TTTAGACCTTTACATGTATG+GGG 0.574340 2_4:+57663631 Msa0337610:CDS
AAGCATGGTGTTCCTGCAGT+TGG 0.575770 2_4:-57664471 None:intergenic
ATGCATAAACGACTGATCCA+CGG 0.576558 2_4:-57663662 None:intergenic
GGGTGGTGGAATGCCCGGAA+CGG 0.578855 2_4:-57664739 None:intergenic
GCCATGTACCAATTAGATCC+CGG 0.583653 2_4:+57664765 Msa0337610:CDS
AAAATGGTGTACTGGTGGCA+TGG 0.584070 2_4:-57663611 None:intergenic
CCGAATCCATTGCCTAAGGA+AGG 0.586652 2_4:+57661967 Msa0337610:CDS
ATCAGTCGTTTATGCATATG+TGG 0.587048 2_4:+57663668 Msa0337610:CDS
ACTTTGCTGATCTTTCTGAA+GGG 0.589658 2_4:+57661650 Msa0337610:CDS
TCGCTTGATAAGGAAGGTTG+AGG 0.589938 2_4:+57666722 Msa0337610:three_prime_UTR
GTCAGAGGCTGTGGAAAGCA+TGG 0.590043 2_4:-57664486 None:intergenic
TGAAAGCCAAAGAGAAATGG+AGG 0.591450 2_4:+57661603 Msa0337610:CDS
GCTTTAAGGCCAAGAGGCAA+CGG 0.591985 2_4:-57665354 None:intergenic
TGAAGGTAAATATTCAAAGA+GGG 0.594817 2_4:+57666278 Msa0337610:three_prime_UTR
TGTGTTACCGGATCTTGAGA+TGG 0.596115 2_4:+57661738 Msa0337610:CDS
AGCAGTAGAGCAGCTAGGTG+TGG 0.596354 2_4:+57663046 Msa0337610:CDS
GGTCTAAAATGGTGTACTGG+TGG 0.597835 2_4:-57663616 None:intergenic
TAATATATTAGGCTTGTGGA+TGG 0.598491 2_4:-57660998 None:intergenic
TTGGAGAAATTAAATCTCAG+AGG 0.598618 2_4:-57666542 None:intergenic
ATAGTTACCGTTGTTGTCAG+AGG 0.601295 2_4:-57664501 None:intergenic
GCCTCTCTTAGACTTCCATC+CGG 0.604166 2_4:+57664821 Msa0337610:CDS
GTTGAGTCGCTTGATAAGGA+AGG 0.604218 2_4:+57666716 Msa0337610:three_prime_UTR
ACGCTTCGTATTGGCACCAA+CGG 0.606057 2_4:+57663755 Msa0337610:CDS
AATTGGTACATGGCATGGGG+TGG 0.606215 2_4:-57664756 None:intergenic
ATCTTGTGCTTGAAAAGGAG+AGG 0.607322 2_4:+57665437 Msa0337610:exon
CCAGCACTTGAAGGTGTGAT+GGG 0.608437 2_4:+57665378 Msa0337610:CDS
ACCGGGATCTAATTGGTACA+TGG 0.610332 2_4:-57664766 None:intergenic
TGTGCCGAATCCATTGCCTA+AGG 0.612555 2_4:+57661963 Msa0337610:CDS
TCCAAGAATAGTTTAATTGG+GGG 0.613225 2_4:+57666915 Msa0337610:three_prime_UTR
AACCATGAAAGAGCGTGAGA+TGG 0.615466 2_4:-57666315 None:intergenic
GACCTAAATTTGTCCACACA+TGG 0.615593 2_4:-57666837 None:intergenic
TGCCAATACGAAGCGTTAGG+AGG 0.617509 2_4:-57663748 None:intergenic
ATATTCGCCTCACCAGCCAC+CGG 0.619018 2_4:+57663696 Msa0337610:CDS
GAATCTTCTGTGCAATTCTG+GGG 0.619894 2_4:-57663018 None:intergenic
GCTGAATTCTCCCTCAGCAG+CGG 0.622418 2_4:+57661775 Msa0337610:CDS
GCAGGTGCCCAGTTAGCCGG+TGG 0.633297 2_4:-57663712 None:intergenic
CAGCAAGCTGGAGTCAAAGG+AGG 0.634073 2_4:+57663506 Msa0337610:CDS
TGATAATAATATGCTTAATG+GGG 0.634602 2_4:+57666455 Msa0337610:three_prime_UTR
AAGTGAGCTCGAAACGCCAG+AGG 0.637419 2_4:-57666872 None:intergenic
AGGATGTAAATATTCATAGA+GGG 0.637636 2_4:+57666641 Msa0337610:three_prime_UTR
TCATGGGAAGAGAAAAGTGA+AGG 0.641795 2_4:+57662032 Msa0337610:CDS
TGGCATGGGAGGGAAACCCA+TGG 0.641923 2_4:-57663596 None:intergenic
ATGGGTGAATTACAGAAACA+AGG 0.642979 2_4:+57665396 Msa0337610:CDS
AAAACTACTCAACCATCCAC+CGG 0.643695 2_4:-57666344 None:intergenic
TGCTAGCTAGTAGCTAGGGT+AGG 0.645094 2_4:-57661301 None:intergenic
ACCGGATCTTGAGATGGACC+CGG 0.646579 2_4:+57661744 Msa0337610:CDS
TCTAATTGGTACATGGCATG+GGG 0.646732 2_4:-57664759 None:intergenic
TTAGACCTTTACATGTATGG+GGG 0.649002 2_4:+57663632 Msa0337610:CDS
GCTTATTGAGATGCCATGTG+TGG 0.652030 2_4:+57666824 Msa0337610:three_prime_UTR
AATGAATATATACTTGAAGG+TGG 0.660387 2_4:-57663139 None:intergenic
ATTCTCCCTCAGCAGCGGTG+AGG 0.665828 2_4:+57661780 Msa0337610:CDS
TAAACGACTGATCCACGGGA+TGG 0.666201 2_4:-57663657 None:intergenic
TGCAGAAATATAGATCGCAT+AGG 0.669423 2_4:+57663455 Msa0337610:intron
CGGCTAACTGGGCACCTGCG+CGG 0.670548 2_4:+57663716 Msa0337610:CDS
ACCGGATGGAAGTCTAAGAG+AGG 0.673915 2_4:-57664822 None:intergenic
GTACAAGCAGTAGAGCAGCT+AGG 0.685057 2_4:+57663041 Msa0337610:CDS
AGGCAATGGATTCGGCACAA+CGG 0.686412 2_4:-57661959 None:intergenic
GCTGGAGCTTTAAGGCCAAG+AGG 0.694599 2_4:-57665360 None:intergenic
GAGGAGATGGTTGACCGGCG+GGG 0.701590 2_4:-57664797 None:intergenic
TCCACAGCCTCTGACAACAA+CGG 0.702383 2_4:+57664494 Msa0337610:CDS
GGTGAATGAGAACTCTATGG+AGG 0.709534 2_4:+57666621 Msa0337610:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAGTATATAATATATT+AGG - chr2_4:57661012-57661031 None:intergenic 10.0%
!!! ATAATATTATAATTTTTGGA+AGG - chr2_4:57661047-57661066 None:intergenic 10.0%
!!! TATATAATTGCTATTTAATT+TGG + chr2_4:57662067-57662086 Msa0337610:intron 10.0%
!! GAAAAAAAAAATTAAGTAAA+AGG - chr2_4:57662119-57662138 None:intergenic 10.0%
!! ATTGATTAATGAAATTTGAA+AGG - chr2_4:57660903-57660922 None:intergenic 15.0%
!! ATAGTTAGAATTATATTCTA+AGG + chr2_4:57661474-57661493 Msa0337610:intron 15.0%
!! TATAATAAACAATGAACAAA+GGG - chr2_4:57662154-57662173 None:intergenic 15.0%
!! TTATAATAAACAATGAACAA+AGG - chr2_4:57662155-57662174 None:intergenic 15.0%
!! TAGACAAATAAAATGAAATA+GGG - chr2_4:57664413-57664432 None:intergenic 15.0%
!! TTAGACAAATAAAATGAAAT+AGG - chr2_4:57664414-57664433 None:intergenic 15.0%
!! TTAACTTATTCATATTATTG+AGG + chr2_4:57664670-57664689 Msa0337610:intron 15.0%
!! TAAAAGAAAAGAAAAATTAC+CGG - chr2_4:57664843-57664862 None:intergenic 15.0%
!!! ACTATTTTCAAATATGTTTT+AGG + chr2_4:57664982-57665001 Msa0337610:intron 15.0%
!! AAATCTATGTAAACTATATA+GGG - chr2_4:57666388-57666407 None:intergenic 15.0%
!! AAAATCTATGTAAACTATAT+AGG - chr2_4:57666389-57666408 None:intergenic 15.0%
!! ATGATAATAATATGCTTAAT+GGG + chr2_4:57666454-57666473 Msa0337610:three_prime_UTR 15.0%
!! AATTCCCTTTAATTAATTTA+GGG - chr2_4:57666748-57666767 None:intergenic 15.0%
!! AAATTCCCTTTAATTAATTT+AGG - chr2_4:57666749-57666768 None:intergenic 15.0%
!! TATATAATATATTAGGCTTG+TGG - chr2_4:57661005-57661024 None:intergenic 20.0%
!! AAGAAAACTAAACCTTAATT+GGG + chr2_4:57661258-57661277 Msa0337610:five_prime_UTR 20.0%
!!! AGATCTAAGAATTATTTCTT+AGG + chr2_4:57662663-57662682 Msa0337610:intron 20.0%
!! TAGTTAGTTAGATATGTAAT+AGG - chr2_4:57662864-57662883 None:intergenic 20.0%
!! CACTTTATTATTAAATTTGC+CGG + chr2_4:57662918-57662937 Msa0337610:intron 20.0%
!! ATAATTTCCAAAATTCTTGA+AGG - chr2_4:57663083-57663102 None:intergenic 20.0%
!!! TTCAAGAATTTTGGAAATTA+TGG + chr2_4:57663082-57663101 Msa0337610:CDS 20.0%
!!! TCAAGAATTTTGGAAATTAT+GGG + chr2_4:57663083-57663102 Msa0337610:CDS 20.0%
!! GAAAATGAATATATACTTGA+AGG - chr2_4:57663145-57663164 None:intergenic 20.0%
!!! ACTTTTTTTTCAGTATATTG+AGG - chr2_4:57663188-57663207 None:intergenic 20.0%
!! TTTACTATCCAATTAACTTA+GGG - chr2_4:57663913-57663932 None:intergenic 20.0%
!!! TGATCAAAATATAGCATTTT+AGG + chr2_4:57664238-57664257 Msa0337610:intron 20.0%
!!! GATCAAAATATAGCATTTTA+GGG + chr2_4:57664239-57664258 Msa0337610:intron 20.0%
!! ATAAAATGAAATAGGGAATT+AGG - chr2_4:57664406-57664425 None:intergenic 20.0%
!!! AAACAATGTCATTTTTTTTG+AGG + chr2_4:57664602-57664621 Msa0337610:intron 20.0%
!! ACGAAAAACAACAAAATAAA+AGG - chr2_4:57665163-57665182 None:intergenic 20.0%
!! TATCAAAACTTGAAATAAAC+TGG - chr2_4:57665199-57665218 None:intergenic 20.0%
!!! ATATTTTTGTTAACAGTCAA+AGG + chr2_4:57665284-57665303 Msa0337610:intron 20.0%
!! CCAGAAAAAATTAATAGAAT+TGG - chr2_4:57665909-57665928 None:intergenic 20.0%
!!! CCAATTCTATTAATTTTTTC+TGG + chr2_4:57665906-57665925 Msa0337610:three_prime_UTR 20.0%
!! AAATATGCGAATAAATTCTT+GGG - chr2_4:57665988-57666007 None:intergenic 20.0%
!! TATCATCTCTATATTGTAAA+TGG - chr2_4:57666440-57666459 None:intergenic 20.0%
!! GATGATAATAATATGCTTAA+TGG + chr2_4:57666453-57666472 Msa0337610:three_prime_UTR 20.0%
!! TGATAATAATATGCTTAATG+GGG + chr2_4:57666455-57666474 Msa0337610:three_prime_UTR 20.0%
!!! TTAATTAAAGGGAATTTTGT+TGG + chr2_4:57666752-57666771 Msa0337610:three_prime_UTR 20.0%
!!! TAATTAAAGGGAATTTTGTT+GGG + chr2_4:57666753-57666772 Msa0337610:three_prime_UTR 20.0%
!! ATCATTTGCATATTGTAAAT+GGG - chr2_4:57666799-57666818 None:intergenic 20.0%
!! TATCATTTGCATATTGTAAA+TGG - chr2_4:57666800-57666819 None:intergenic 20.0%
!! ATGAAATTTGAAAGGTGTAA+TGG - chr2_4:57660895-57660914 None:intergenic 25.0%
! CAAACAAAAATCATAAGTTG+TGG + chr2_4:57661120-57661139 Msa0337610:five_prime_UTR 25.0%
! CAAGAAAACTAAACCTTAAT+TGG + chr2_4:57661257-57661276 Msa0337610:five_prime_UTR 25.0%
!!! TTTTTTGTGTTTATAGTGTG+TGG + chr2_4:57661511-57661530 Msa0337610:intron 25.0%
! AATAGCAAATCTTGTAATGA+TGG + chr2_4:57661829-57661848 Msa0337610:CDS 25.0%
! ATAGCAAATCTTGTAATGAT+GGG + chr2_4:57661830-57661849 Msa0337610:CDS 25.0%
! AAGAAATTGAACTTCTTATC+CGG + chr2_4:57662173-57662192 Msa0337610:intron 25.0%
! TACCTTATGATTTAGGTAAT+AGG + chr2_4:57662272-57662291 Msa0337610:intron 25.0%
! TTCCTATTACCTAAATCATA+AGG - chr2_4:57662277-57662296 None:intergenic 25.0%
! CAAAAATAGTTATTCCAACA+AGG - chr2_4:57662424-57662443 None:intergenic 25.0%
!! CTTGTTGGAATAACTATTTT+TGG + chr2_4:57662422-57662441 Msa0337610:intron 25.0%
!! TTTTTGAATGGTGAATCTAA+GGG - chr2_4:57662748-57662767 None:intergenic 25.0%
!!! TTTTTTGAATGGTGAATCTA+AGG - chr2_4:57662749-57662768 None:intergenic 25.0%
!!! CTTGATCACTATTTTTTGAA+TGG - chr2_4:57662760-57662779 None:intergenic 25.0%
!! CAGAAATTCCTTTGAATTTT+AGG - chr2_4:57662824-57662843 None:intergenic 25.0%
! CATACTATAAAGTACAAATC+CGG - chr2_4:57662940-57662959 None:intergenic 25.0%
!!! ATGTGTTTATGTTTGTTGTT+GGG + chr2_4:57662972-57662991 Msa0337610:intron 25.0%
! AATGAATATATACTTGAAGG+TGG - chr2_4:57663142-57663161 None:intergenic 25.0%
! ACGTAAATTTAAGCATCTAA+TGG + chr2_4:57663282-57663301 Msa0337610:intron 25.0%
! CGTAAATTTAAGCATCTAAT+GGG + chr2_4:57663283-57663302 Msa0337610:intron 25.0%
! ATCTACGTAAATCAAATTGT+TGG + chr2_4:57663312-57663331 Msa0337610:intron 25.0%
!!! ATAGTTGATTTATTTTAGCG+AGG + chr2_4:57663387-57663406 Msa0337610:intron 25.0%
!!! TAGTTGATTTATTTTAGCGA+GGG + chr2_4:57663388-57663407 Msa0337610:intron 25.0%
! AAAGAGATATTGTGAATCAT+TGG + chr2_4:57663563-57663582 Msa0337610:CDS 25.0%
! AAGAGATATTGTGAATCATT+GGG + chr2_4:57663564-57663583 Msa0337610:CDS 25.0%
! ATACATGTAAAGGTCTAAAA+TGG - chr2_4:57663630-57663649 None:intergenic 25.0%
!! ATTTTAGACCTTTACATGTA+TGG + chr2_4:57663629-57663648 Msa0337610:CDS 25.0%
!! TTTTAGACCTTTACATGTAT+GGG + chr2_4:57663630-57663649 Msa0337610:CDS 25.0%
!! TCAATATATCATCAGAGTTT+TGG - chr2_4:57663843-57663862 None:intergenic 25.0%
! GTTTACTATCCAATTAACTT+AGG - chr2_4:57663914-57663933 None:intergenic 25.0%
!!! ACAAAAACTTAGCTTTTCTT+TGG + chr2_4:57663932-57663951 Msa0337610:intron 25.0%
! TCGAGACAAAAAATTAGTTA+GGG + chr2_4:57663957-57663976 Msa0337610:intron 25.0%
! ACAATGAAGAGATTTAAATG+TGG - chr2_4:57664058-57664077 None:intergenic 25.0%
! TTGATCATTAGTGATACAAA+AGG - chr2_4:57664225-57664244 None:intergenic 25.0%
!!! GTTTCTTTCTTTTTTTGTGT+AGG + chr2_4:57664437-57664456 Msa0337610:intron 25.0%
! TTCACATAAGAATCCAAATT+TGG - chr2_4:57664568-57664587 None:intergenic 25.0%
! TACTATAAAATGCAGAGATT+TGG + chr2_4:57664708-57664727 Msa0337610:intron 25.0%
! AAAGGTTGTATTTATAGACA+CGG - chr2_4:57665145-57665164 None:intergenic 25.0%
! TATGAAAATTCGTCGAATTA+GGG - chr2_4:57665495-57665514 None:intergenic 25.0%
! ATATGAAAATTCGTCGAATT+AGG - chr2_4:57665496-57665515 None:intergenic 25.0%
!! TCGAGTTAAACTTTTTATGT+TGG - chr2_4:57665608-57665627 None:intergenic 25.0%
! ATGACATTGTTAGGATTATA+AGG + chr2_4:57665670-57665689 Msa0337610:three_prime_UTR 25.0%
! GAAATATGCGAATAAATTCT+TGG - chr2_4:57665989-57666008 None:intergenic 25.0%
!!! GGTTTTTAGATTATACAATG+AGG + chr2_4:57666154-57666173 Msa0337610:three_prime_UTR 25.0%
! ATGAAGGTAAATATTCAAAG+AGG + chr2_4:57666277-57666296 Msa0337610:three_prime_UTR 25.0%
! TGAAGGTAAATATTCAAAGA+GGG + chr2_4:57666278-57666297 Msa0337610:three_prime_UTR 25.0%
!!! TGGTTGAGTAGTTTTATATA+AGG + chr2_4:57666352-57666371 Msa0337610:three_prime_UTR 25.0%
!! TAGTTTACATAGATTTTCGT+TGG + chr2_4:57666392-57666411 Msa0337610:three_prime_UTR 25.0%
!! AGTTTACATAGATTTTCGTT+GGG + chr2_4:57666393-57666412 Msa0337610:three_prime_UTR 25.0%
!! GATTTAATTTCTCCAAGAAA+AGG + chr2_4:57666549-57666568 Msa0337610:three_prime_UTR 25.0%
! AGGATGTAAATATTCATAGA+GGG + chr2_4:57666641-57666660 Msa0337610:three_prime_UTR 25.0%
! CACTAGTAAAAATAGAAAAG+AGG - chr2_4:57666689-57666708 None:intergenic 25.0%
!!! CTCTTTTCTATTTTTACTAG+TGG + chr2_4:57666687-57666706 Msa0337610:three_prime_UTR 25.0%
!!! TTTTCTATTTTTACTAGTGG+TGG + chr2_4:57666690-57666709 Msa0337610:three_prime_UTR 25.0%
!!! TTTCTATTTTTACTAGTGGT+GGG + chr2_4:57666691-57666710 Msa0337610:three_prime_UTR 25.0%
! TTCTCCAAGAATAGTTTAAT+TGG + chr2_4:57666912-57666931 Msa0337610:three_prime_UTR 25.0%
! TCTCCAAGAATAGTTTAATT+GGG + chr2_4:57666913-57666932 Msa0337610:three_prime_UTR 25.0%
TAATATATTAGGCTTGTGGA+TGG - chr2_4:57661001-57661020 None:intergenic 30.0%
!! AATGGTAATGTTGCCTTTTT+AGG - chr2_4:57661196-57661215 None:intergenic 30.0%
! ACCATTTTCAAAGTCCATTA+AGG + chr2_4:57661210-57661229 Msa0337610:five_prime_UTR 30.0%
!! TCCTTAATGGACTTTGAAAA+TGG - chr2_4:57661214-57661233 None:intergenic 30.0%
! TAGTTTTCTTGTGAAAGAGA+TGG - chr2_4:57661248-57661267 None:intergenic 30.0%
!!! TGATTTTTTGCACCCAATTA+AGG - chr2_4:57661273-57661292 None:intergenic 30.0%
AATCAAGAAACTAGCCAAAT+AGG + chr2_4:57661539-57661558 Msa0337610:five_prime_UTR 30.0%
GAATCGGATATAAATTCATC+AGG + chr2_4:57661802-57661821 Msa0337610:CDS 30.0%
! ATCTTGTAATGATGGGAATA+TGG + chr2_4:57661837-57661856 Msa0337610:CDS 30.0%
AATCAAAGAATAACCCTCAT+GGG + chr2_4:57662016-57662035 Msa0337610:CDS 30.0%
ATGGCAATACCTTATGATTT+AGG + chr2_4:57662265-57662284 Msa0337610:intron 30.0%
TTTGAATGCAAAAGAACTCA+CGG + chr2_4:57662363-57662382 Msa0337610:intron 30.0%
!! CGTCTAACTTTGAAATTGAT+TGG + chr2_4:57662605-57662624 Msa0337610:intron 30.0%
TTGTTTGTTCCATGCATAAT+AGG + chr2_4:57662713-57662732 Msa0337610:intron 30.0%
! TTTTGAATGGTGAATCTAAG+GGG - chr2_4:57662747-57662766 None:intergenic 30.0%
ATCCAAGTCCTAAAATTCAA+AGG + chr2_4:57662813-57662832 Msa0337610:intron 30.0%
!!! TTCCTTTGAATTTTAGGACT+TGG - chr2_4:57662818-57662837 None:intergenic 30.0%
! GTGTGAATATATTTTGTGCT+GGG - chr2_4:57662891-57662910 None:intergenic 30.0%
! TGTGTGAATATATTTTGTGC+TGG - chr2_4:57662892-57662911 None:intergenic 30.0%
!! GATGTGTTTATGTTTGTTGT+TGG + chr2_4:57662971-57662990 Msa0337610:intron 30.0%
! TGAGGTTTGAAATTAAAGAG+AGG - chr2_4:57663170-57663189 None:intergenic 30.0%
! CAATTGTTTGGAACAAATAG+AGG + chr2_4:57663529-57663548 Msa0337610:CDS 30.0%
TTTAGACCTTTACATGTATG+GGG + chr2_4:57663631-57663650 Msa0337610:CDS 30.0%
AACTTAATTTACTTACCCGT+TGG - chr2_4:57663774-57663793 None:intergenic 30.0%
CTCGAGACAAAAAATTAGTT+AGG + chr2_4:57663956-57663975 Msa0337610:intron 30.0%
AGTTAGGGCATACTTAATAA+CGG + chr2_4:57663972-57663991 Msa0337610:intron 30.0%
GATTATGTTACAAACTTGCA+AGG + chr2_4:57664125-57664144 Msa0337610:intron 30.0%
! AGAATATGAATCCAAGCTTT+TGG - chr2_4:57664198-57664217 None:intergenic 30.0%
TTGTCTTCTACTTCCAAATT+TGG + chr2_4:57664552-57664571 Msa0337610:intron 30.0%
AGAAAAGAAAAATTACCGGA+TGG - chr2_4:57664839-57664858 None:intergenic 30.0%
TTGGCTTCTTATTACTTTGA+AGG + chr2_4:57664926-57664945 Msa0337610:intron 30.0%
TGGCTTCTTATTACTTTGAA+GGG + chr2_4:57664927-57664946 Msa0337610:intron 30.0%
CAAAACTTGAAATAAACTGG+TGG - chr2_4:57665196-57665215 None:intergenic 30.0%
!! TTTTATGTTGGTCTACTAGA+CGG - chr2_4:57665596-57665615 None:intergenic 30.0%
ATGCGAAATATGACATTGTT+AGG + chr2_4:57665661-57665680 Msa0337610:three_prime_UTR 30.0%
! TAAGGCTGTGATTTTTGTAT+TGG + chr2_4:57665688-57665707 Msa0337610:three_prime_UTR 30.0%
CTCATTAATATCATCTTCCT+CGG - chr2_4:57665714-57665733 None:intergenic 30.0%
! TACACTTCCAAGACAATTTT+AGG - chr2_4:57665882-57665901 None:intergenic 30.0%
GCATATTTCTCCAAATCAAT+CGG + chr2_4:57666000-57666019 Msa0337610:three_prime_UTR 30.0%
AAAAGTAGAGAAGTAGCTAT+TGG + chr2_4:57666031-57666050 Msa0337610:three_prime_UTR 30.0%
AATCATTGATCCTACAAGTA+TGG + chr2_4:57666073-57666092 Msa0337610:three_prime_UTR 30.0%
ATCATTGATCCTACAAGTAT+GGG + chr2_4:57666074-57666093 Msa0337610:three_prime_UTR 30.0%
TATAATCTAAAAACCCCCAA+GGG - chr2_4:57666149-57666168 None:intergenic 30.0%
GATTATACAATGAGGATGTT+TGG + chr2_4:57666162-57666181 Msa0337610:three_prime_UTR 30.0%
AAAAGTAGAGATCTTGGATT+TGG + chr2_4:57666195-57666214 Msa0337610:three_prime_UTR 30.0%
AAAGTAGAGATCTTGGATTT+GGG + chr2_4:57666196-57666215 Msa0337610:three_prime_UTR 30.0%
TATGGATATCATGTTAGTGT+TGG + chr2_4:57666237-57666256 Msa0337610:three_prime_UTR 30.0%
TAATGAGAACTCTACAATGA+AGG + chr2_4:57666261-57666280 Msa0337610:three_prime_UTR 30.0%
!!! TGAGTAGTTTTATATAAGGC+AGG + chr2_4:57666356-57666375 Msa0337610:three_prime_UTR 30.0%
GGTCTTTGATGAAAATCATT+TGG + chr2_4:57666499-57666518 Msa0337610:three_prime_UTR 30.0%
TTGGAGAAATTAAATCTCAG+AGG - chr2_4:57666545-57666564 None:intergenic 30.0%
TTCTCCAAGAAAAGGTTAAT+TGG + chr2_4:57666557-57666576 Msa0337610:three_prime_UTR 30.0%
TCTCCAAGAAAAGGTTAATT+GGG + chr2_4:57666558-57666577 Msa0337610:three_prime_UTR 30.0%
TATGGATATCCTGTCATTAT+TGG + chr2_4:57666600-57666619 Msa0337610:three_prime_UTR 30.0%
GAGGATGTAAATATTCATAG+AGG + chr2_4:57666640-57666659 Msa0337610:three_prime_UTR 30.0%
TGAGGCCCTAAATTAATTAA+AGG + chr2_4:57666740-57666759 Msa0337610:three_prime_UTR 30.0%
GAGGCCCTAAATTAATTAAA+GGG + chr2_4:57666741-57666760 Msa0337610:three_prime_UTR 30.0%
CTCCAAGAATAGTTTAATTG+GGG + chr2_4:57666914-57666933 Msa0337610:three_prime_UTR 30.0%
TCCAAGAATAGTTTAATTGG+GGG + chr2_4:57666915-57666934 Msa0337610:three_prime_UTR 30.0%
TTTGGAAGAAGAAACTAGCT+TGG - chr2_4:57661157-57661176 None:intergenic 35.0%
!! AATGTTGCCTTTTTAGGAAG+CGG - chr2_4:57661190-57661209 None:intergenic 35.0%
GCTAGCATGATAATCCTATT+TGG - chr2_4:57661556-57661575 None:intergenic 35.0%
TCATCTCTTATGCTACTCAA+TGG - chr2_4:57661586-57661605 None:intergenic 35.0%
AGATGAAAGCCAAAGAGAAA+TGG + chr2_4:57661600-57661619 Msa0337610:CDS 35.0%
AATTCTCCTCCATTTCTCTT+TGG - chr2_4:57661612-57661631 None:intergenic 35.0%
ACTTTGCTGATCTTTCTGAA+GGG + chr2_4:57661650-57661669 Msa0337610:CDS 35.0%
! TCTTTCTGAAGGGAACTTAT+TGG + chr2_4:57661660-57661679 Msa0337610:CDS 35.0%
GTAGTTTCTTCTTCAGATTC+TGG + chr2_4:57661895-57661914 Msa0337610:CDS 35.0%
CAATCAAAGAATAACCCTCA+TGG + chr2_4:57662015-57662034 Msa0337610:CDS 35.0%
TTGAATGCAAAAGAACTCAC+GGG + chr2_4:57662364-57662383 Msa0337610:intron 35.0%
GATATATCTCATGACCTTGT+TGG + chr2_4:57662407-57662426 Msa0337610:intron 35.0%
AGCCAGTCGATCTAAATTAA+CGG + chr2_4:57662576-57662595 Msa0337610:intron 35.0%
GTACTCTAACCTATTATGCA+TGG - chr2_4:57662725-57662744 None:intergenic 35.0%
! CTTGGATTTTCTACTATTGG+TGG - chr2_4:57662800-57662819 None:intergenic 35.0%
! GGACTTGGATTTTCTACTAT+TGG - chr2_4:57662803-57662822 None:intergenic 35.0%
! GTTGTTGGGTTGTGTAAATT+AGG + chr2_4:57662986-57663005 Msa0337610:intron 35.0%
GTTGTGTAAATTAGGTGGAT+TGG + chr2_4:57662994-57663013 Msa0337610:intron 35.0%
AATATATACTTGAAGGTGGC+TGG - chr2_4:57663138-57663157 None:intergenic 35.0%
TGCAGAAATATAGATCGCAT+AGG + chr2_4:57663455-57663474 Msa0337610:intron 35.0%
! TTTGGAACAAATAGAGGAGT+TGG + chr2_4:57663535-57663554 Msa0337610:CDS 35.0%
! AAAGGTCTAAAATGGTGTAC+TGG - chr2_4:57663622-57663641 None:intergenic 35.0%
TTAGACCTTTACATGTATGG+GGG + chr2_4:57663632-57663651 Msa0337610:CDS 35.0%
ATCAGTCGTTTATGCATATG+TGG + chr2_4:57663668-57663687 Msa0337610:CDS 35.0%
!!! CAGAGTTTTGGATCTCTTTT+GGG - chr2_4:57663831-57663850 None:intergenic 35.0%
!!! TCAGAGTTTTGGATCTCTTT+TGG - chr2_4:57663832-57663851 None:intergenic 35.0%
CTAGCAAACCCTAAGTTAAT+TGG + chr2_4:57663902-57663921 Msa0337610:intron 35.0%
ATGAGTCTGTACTCAAAATG+TGG + chr2_4:57664030-57664049 Msa0337610:intron 35.0%
GAAATAGGGAATTAGGAGAT+TGG - chr2_4:57664399-57664418 None:intergenic 35.0%
ATCTAATTGGTACATGGCAT+GGG - chr2_4:57664763-57664782 None:intergenic 35.0%
! GGCTTCTTATTACTTTGAAG+GGG + chr2_4:57664928-57664947 Msa0337610:intron 35.0%
AGAGACAAGCAAGAAAATGA+CGG - chr2_4:57665059-57665078 None:intergenic 35.0%
ATGGGTGAATTACAGAAACA+AGG + chr2_4:57665396-57665415 Msa0337610:CDS 35.0%
! TGAAAAGGAGAGGATGTTTT+TGG + chr2_4:57665447-57665466 Msa0337610:exon 35.0%
!!! TGTTTTTGGTTCATTGCACA+AGG + chr2_4:57665461-57665480 Msa0337610:three_prime_UTR 35.0%
TTGATGAAAGCCGATTGATT+TGG - chr2_4:57666013-57666032 None:intergenic 35.0%
! AAGCTTACAATTTTGTCCCT+TGG + chr2_4:57666130-57666149 Msa0337610:three_prime_UTR 35.0%
! AGCTTACAATTTTGTCCCTT+GGG + chr2_4:57666131-57666150 Msa0337610:three_prime_UTR 35.0%
GTATAATCTAAAAACCCCCA+AGG - chr2_4:57666150-57666169 None:intergenic 35.0%
!!! ATGAGGATGTTTGGTTTTGA+CGG + chr2_4:57666171-57666190 Msa0337610:three_prime_UTR 35.0%
!! CTCTTTCATGGTTTTACTAC+CGG + chr2_4:57666325-57666344 Msa0337610:three_prime_UTR 35.0%
ATTGTAAATGGACGATCATC+AGG - chr2_4:57666428-57666447 None:intergenic 35.0%
AGCCAAATGTTGAGAATATG+AGG + chr2_4:57666478-57666497 Msa0337610:three_prime_UTR 35.0%
GACCTCATATTCTCAACATT+TGG - chr2_4:57666483-57666502 None:intergenic 35.0%
CTCCAAGAAAAGGTTAATTG+GGG + chr2_4:57666559-57666578 Msa0337610:three_prime_UTR 35.0%
! CATGTACCTGTTTTCTTGTA+TGG + chr2_4:57666582-57666601 Msa0337610:three_prime_UTR 35.0%
GGATATCCATACAAGAAAAC+AGG - chr2_4:57666591-57666610 None:intergenic 35.0%
TCTCATTCACCAATAATGAC+AGG - chr2_4:57666612-57666631 None:intergenic 35.0%
ATTGGTGAATGAGAACTCTA+TGG + chr2_4:57666618-57666637 Msa0337610:three_prime_UTR 35.0%
ATTCATAGAGGGCTCAAATA+AGG + chr2_4:57666652-57666671 Msa0337610:three_prime_UTR 35.0%
TCTTGGAGAAATTAACTCTC+AGG - chr2_4:57666902-57666921 None:intergenic 35.0%
ACCCCCAATTAAACTATTCT+TGG - chr2_4:57666919-57666938 None:intergenic 35.0%
AGTTTAATTGGGGGTAAATG+TGG + chr2_4:57666924-57666943 Msa0337610:three_prime_UTR 35.0%
TACATGCTAGCTAGTAGCTA+GGG - chr2_4:57661308-57661327 None:intergenic 40.0%
TTACATGCTAGCTAGTAGCT+AGG - chr2_4:57661309-57661328 None:intergenic 40.0%
TGAAAGCCAAAGAGAAATGG+AGG + chr2_4:57661603-57661622 Msa0337610:CDS 40.0%
GACTTTGCTGATCTTTCTGA+AGG + chr2_4:57661649-57661668 Msa0337610:CDS 40.0%
TTCTTCGTATGCTTCAACGA+CGG + chr2_4:57661712-57661731 Msa0337610:CDS 40.0%
AGAATTCAGCAAGCATTTCC+GGG - chr2_4:57661765-57661784 None:intergenic 40.0%
GAGAATTCAGCAAGCATTTC+CGG - chr2_4:57661766-57661785 None:intergenic 40.0%
!! TCACTTTTCTCTTCCCATGA+GGG - chr2_4:57662032-57662051 None:intergenic 40.0%
!! TTCACTTTTCTCTTCCCATG+AGG - chr2_4:57662033-57662052 None:intergenic 40.0%
TCATGGGAAGAGAAAAGTGA+AGG + chr2_4:57662032-57662051 Msa0337610:CDS 40.0%
! TGTGTAAGCGTTGTATACTC+CGG - chr2_4:57662195-57662214 None:intergenic 40.0%
! TTCTCCTTCTTTTGAGCACA+TGG + chr2_4:57662246-57662265 Msa0337610:intron 40.0%
ATTGCCATGTGCTCAAAAGA+AGG - chr2_4:57662253-57662272 None:intergenic 40.0%
AGATAGCGACAGATCATTCA+AGG - chr2_4:57662321-57662340 None:intergenic 40.0%
GTCCGTTAATTTAGATCGAC+TGG - chr2_4:57662581-57662600 None:intergenic 40.0%
GGAACAAACAAACACACAAG+AGG - chr2_4:57662704-57662723 None:intergenic 40.0%
! GTTGGGTTGTGTAAATTAGG+TGG + chr2_4:57662989-57663008 Msa0337610:intron 40.0%
GAATCTTCTGTGCAATTCTG+GGG - chr2_4:57663021-57663040 None:intergenic 40.0%
CGAATCTTCTGTGCAATTCT+GGG - chr2_4:57663022-57663041 None:intergenic 40.0%
ACGAATCTTCTGTGCAATTC+TGG - chr2_4:57663023-57663042 None:intergenic 40.0%
! GGCTGTACCTTCAAGAATTT+TGG + chr2_4:57663073-57663092 Msa0337610:CDS 40.0%
AGTCAAAGGAGGCAATTGTT+TGG + chr2_4:57663517-57663536 Msa0337610:CDS 40.0%
ATGCATAAACGACTGATCCA+CGG - chr2_4:57663665-57663684 None:intergenic 40.0%
ACAGCATAGAAGTTGTAGAG+AGG + chr2_4:57664080-57664099 Msa0337610:intron 40.0%
ACTTAGCTTCACCAAAAGCT+TGG + chr2_4:57664184-57664203 Msa0337610:intron 40.0%
ATAGTTACCGTTGTTGTCAG+AGG - chr2_4:57664504-57664523 None:intergenic 40.0%
TCTAATTGGTACATGGCATG+GGG - chr2_4:57664762-57664781 None:intergenic 40.0%
GATCTAATTGGTACATGGCA+TGG - chr2_4:57664764-57664783 None:intergenic 40.0%
GAGACAAGCAAGAAAATGAC+GGG - chr2_4:57665058-57665077 None:intergenic 40.0%
!!! TGTGTTTTGGAGAAAGAGAG+AGG - chr2_4:57665091-57665110 None:intergenic 40.0%
! TGAATGCATGCTGTGTGTTT+TGG - chr2_4:57665104-57665123 None:intergenic 40.0%
!! GCACAAGATGGTGGAATATT+TGG - chr2_4:57665426-57665445 None:intergenic 40.0%
!! TCTCCTTTTCAAGCACAAGA+TGG - chr2_4:57665438-57665457 None:intergenic 40.0%
ATCTTGTGCTTGAAAAGGAG+AGG + chr2_4:57665437-57665456 Msa0337610:exon 40.0%
!! TGTGATTTTTGTATTGGCCG+AGG + chr2_4:57665694-57665713 Msa0337610:three_prime_UTR 40.0%
! GCTTACAATTTTGTCCCTTG+GGG + chr2_4:57666132-57666151 Msa0337610:three_prime_UTR 40.0%
! CTTACAATTTTGTCCCTTGG+GGG + chr2_4:57666133-57666152 Msa0337610:three_prime_UTR 40.0%
GACGGTAAAAGTAGAGATCT+TGG + chr2_4:57666189-57666208 Msa0337610:three_prime_UTR 40.0%
! CATGCACATGTTTTCGCATA+TGG + chr2_4:57666219-57666238 Msa0337610:three_prime_UTR 40.0%
ATTCAAAGAGGGCTCAAGTA+AGG + chr2_4:57666289-57666308 Msa0337610:three_prime_UTR 40.0%
!! TTTCATGGTTTTACTACCGG+TGG + chr2_4:57666328-57666347 Msa0337610:three_prime_UTR 40.0%
AAAACTACTCAACCATCCAC+CGG - chr2_4:57666347-57666366 None:intergenic 40.0%
! GTTTTATATAAGGCAGGTCG+AGG + chr2_4:57666362-57666381 Msa0337610:three_prime_UTR 40.0%
! TGCCCCAATTAACCTTTTCT+TGG - chr2_4:57666564-57666583 None:intergenic 40.0%
!!! CTATTTTTACTAGTGGTGGG+AGG + chr2_4:57666694-57666713 Msa0337610:three_prime_UTR 40.0%
TGCCATGTGTGGACAAATTT+AGG + chr2_4:57666835-57666854 Msa0337610:three_prime_UTR 40.0%
GACCTAAATTTGTCCACACA+TGG - chr2_4:57666840-57666859 None:intergenic 40.0%
TTAATTGGGGGTAAATGTGG+AGG + chr2_4:57666927-57666946 Msa0337610:three_prime_UTR 40.0%
GGAACTAGTGCTCTCCTTAA+TGG - chr2_4:57661227-57661246 None:intergenic 45.0%
TGTGTTACCGGATCTTGAGA+TGG + chr2_4:57661738-57661757 Msa0337610:CDS 45.0%
! CCTTCCTTAGGCAATGGATT+CGG - chr2_4:57661970-57661989 None:intergenic 45.0%
TTCTCACCTTCCTTAGGCAA+TGG - chr2_4:57661976-57661995 None:intergenic 45.0%
TTGCCTAAGGAAGGTGAGAA+AGG + chr2_4:57661976-57661995 Msa0337610:CDS 45.0%
CTTCCTTTCTCACCTTCCTT+AGG - chr2_4:57661982-57662001 None:intergenic 45.0%
GAGAAAAAACCTAGCGCAAG+TGG - chr2_4:57662231-57662250 None:intergenic 45.0%
GGAACAAATAGAGGAGTTGG+AGG + chr2_4:57663538-57663557 Msa0337610:CDS 45.0%
! AAATGGTGTACTGGTGGCAT+GGG - chr2_4:57663613-57663632 None:intergenic 45.0%
! AAAATGGTGTACTGGTGGCA+TGG - chr2_4:57663614-57663633 None:intergenic 45.0%
! GGTCTAAAATGGTGTACTGG+TGG - chr2_4:57663619-57663638 None:intergenic 45.0%
TGCATAAACGACTGATCCAC+GGG - chr2_4:57663664-57663683 None:intergenic 45.0%
GCCATGTACCAATTAGATCC+CGG + chr2_4:57664765-57664784 Msa0337610:CDS 45.0%
ACCGGGATCTAATTGGTACA+TGG - chr2_4:57664769-57664788 None:intergenic 45.0%
! CAAGCAAGAAAATGACGGGA+TGG - chr2_4:57665054-57665073 None:intergenic 45.0%
!!! GTTTTGGAGAAAGAGAGAGG+AGG - chr2_4:57665088-57665107 None:intergenic 45.0%
CCAAGAGGCAACGGTAAATA+TGG - chr2_4:57665348-57665367 None:intergenic 45.0%
CCATATTTACCGTTGCCTCT+TGG + chr2_4:57665345-57665364 Msa0337610:CDS 45.0%
!! CTTCAAGTGCTGGAGCTTTA+AGG - chr2_4:57665371-57665390 None:intergenic 45.0%
CTTAAAGCTCCAGCACTTGA+AGG + chr2_4:57665369-57665388 Msa0337610:CDS 45.0%
!! CCTTTTCAAGCACAAGATGG+TGG - chr2_4:57665435-57665454 None:intergenic 45.0%
CCACCATCTTGTGCTTGAAA+AGG + chr2_4:57665432-57665451 Msa0337610:exon 45.0%
! TGTTGGTCTACTAGACGGTA+TGG - chr2_4:57665591-57665610 None:intergenic 45.0%
TCACTCACTCCCATACTTGT+AGG - chr2_4:57666086-57666105 None:intergenic 45.0%
! AACCATGAAAGAGCGTGAGA+TGG - chr2_4:57666318-57666337 None:intergenic 45.0%
!! ATGGTTTTACTACCGGTGGA+TGG + chr2_4:57666332-57666351 Msa0337610:three_prime_UTR 45.0%
TGGTGTTTCGAGCTCACTTT+AGG + chr2_4:57666519-57666538 Msa0337610:three_prime_UTR 45.0%
GGTGAATGAGAACTCTATGG+AGG + chr2_4:57666621-57666640 Msa0337610:three_prime_UTR 45.0%
GTTGAGTCGCTTGATAAGGA+AGG + chr2_4:57666716-57666735 Msa0337610:three_prime_UTR 45.0%
TCGCTTGATAAGGAAGGTTG+AGG + chr2_4:57666722-57666741 Msa0337610:three_prime_UTR 45.0%
GCTTATTGAGATGCCATGTG+TGG + chr2_4:57666824-57666843 Msa0337610:three_prime_UTR 45.0%
! GGTCTTTGATGACAATCCTC+TGG + chr2_4:57666856-57666875 Msa0337610:three_prime_UTR 45.0%
!! AAAAAAAATAAAATCAAAAT+TGG + chr2_4:57660968-57660987 Msa0337610:five_prime_UTR 5.0%
!!! CTATATAATATTATAATTTT+TGG - chr2_4:57661051-57661070 None:intergenic 5.0%
!! AAAAAAAAAATTAAGTAAAA+GGG - chr2_4:57662118-57662137 None:intergenic 5.0%
!!! AAACTATTAAATTTTATTTT+TGG + chr2_4:57664907-57664926 Msa0337610:intron 5.0%
!!! AAAAAAACTAATTTTTTTAA+TGG + chr2_4:57664954-57664973 Msa0337610:intron 5.0%
! TCCCTTGCCGCTTCCTAAAA+AGG + chr2_4:57661180-57661199 Msa0337610:five_prime_UTR 50.0%
!! GCCTTTTTAGGAAGCGGCAA+GGG - chr2_4:57661184-57661203 None:intergenic 50.0%
!! TGCCTTTTTAGGAAGCGGCA+AGG - chr2_4:57661185-57661204 None:intergenic 50.0%
TGCTAGCTAGTAGCTAGGGT+AGG - chr2_4:57661304-57661323 None:intergenic 50.0%
CAACGACGGAGATGTGTTAC+CGG + chr2_4:57661726-57661745 Msa0337610:CDS 50.0%
!! AGATTCTGGTTCGAGTCGTG+TGG + chr2_4:57661909-57661928 Msa0337610:CDS 50.0%
! AGGCAATGGATTCGGCACAA+CGG - chr2_4:57661962-57661981 None:intergenic 50.0%
TGTGCCGAATCCATTGCCTA+AGG + chr2_4:57661963-57661982 Msa0337610:CDS 50.0%
CCGAATCCATTGCCTAAGGA+AGG + chr2_4:57661967-57661986 Msa0337610:CDS 50.0%
GTACAAGCAGTAGAGCAGCT+AGG + chr2_4:57663041-57663060 Msa0337610:CDS 50.0%
AGAGCAGCTAGGTGTGGATA+AGG + chr2_4:57663052-57663071 Msa0337610:CDS 50.0%
AAGCAGCAAGCTGGAGTCAA+AGG + chr2_4:57663503-57663522 Msa0337610:CDS 50.0%
! TCATTGGGTTGCACCAACCA+TGG + chr2_4:57663579-57663598 Msa0337610:CDS 50.0%
! CATTGGGTTGCACCAACCAT+GGG + chr2_4:57663580-57663599 Msa0337610:CDS 50.0%
TGGTGCCCCCATACATGTAA+AGG - chr2_4:57663640-57663659 None:intergenic 50.0%
TAAACGACTGATCCACGGGA+TGG - chr2_4:57663660-57663679 None:intergenic 50.0%
GGCTGGTGAGGCGAATATTT+AGG - chr2_4:57663694-57663713 None:intergenic 50.0%
! CAATACGAAGCGTTAGGAGG+TGG - chr2_4:57663748-57663767 None:intergenic 50.0%
CACCTCCTAACGCTTCGTAT+TGG + chr2_4:57663746-57663765 Msa0337610:CDS 50.0%
! TGCCAATACGAAGCGTTAGG+AGG - chr2_4:57663751-57663770 None:intergenic 50.0%
! TGGTGCCAATACGAAGCGTT+AGG - chr2_4:57663754-57663773 None:intergenic 50.0%
! ACGCTTCGTATTGGCACCAA+CGG + chr2_4:57663755-57663774 Msa0337610:CDS 50.0%
! GTTCCTGCAGTTGGTGCATT+TGG - chr2_4:57664465-57664484 None:intergenic 50.0%
AAGCATGGTGTTCCTGCAGT+TGG - chr2_4:57664474-57664493 None:intergenic 50.0%
TCCACAGCCTCTGACAACAA+CGG + chr2_4:57664494-57664513 Msa0337610:CDS 50.0%
!! ATTTGGCTCTCCAACCGTTC+CGG + chr2_4:57664725-57664744 Msa0337610:CDS 50.0%
AATTGGTACATGGCATGGGG+TGG - chr2_4:57664759-57664778 None:intergenic 50.0%
TCTAAGAGAGGCTGAGGAGA+TGG - chr2_4:57664813-57664832 None:intergenic 50.0%
TGGAAGTCTAAGAGAGGCTG+AGG - chr2_4:57664819-57664838 None:intergenic 50.0%
GCCTCTCTTAGACTTCCATC+CGG + chr2_4:57664821-57664840 Msa0337610:CDS 50.0%
ACCGGATGGAAGTCTAAGAG+AGG - chr2_4:57664825-57664844 None:intergenic 50.0%
TGGAGAAAGAGAGAGGAGGA+TGG - chr2_4:57665084-57665103 None:intergenic 50.0%
!! GCTTTAAGGCCAAGAGGCAA+CGG - chr2_4:57665357-57665376 None:intergenic 50.0%
! TCCAGCACTTGAAGGTGTGA+TGG + chr2_4:57665377-57665396 Msa0337610:CDS 50.0%
! CCAGCACTTGAAGGTGTGAT+GGG + chr2_4:57665378-57665397 Msa0337610:CDS 50.0%
GACCATCTCACGCTCTTTCA+TGG + chr2_4:57666313-57666332 Msa0337610:three_prime_UTR 50.0%
GGAGGTTGAGTCGCTTGATA+AGG + chr2_4:57666712-57666731 Msa0337610:three_prime_UTR 50.0%
ACCGGATCTTGAGATGGACC+CGG + chr2_4:57661744-57661763 Msa0337610:CDS 55.0%
TCCGGGTCCATCTCAAGATC+CGG - chr2_4:57661748-57661767 None:intergenic 55.0%
GCTGAATTCTCCCTCAGCAG+CGG + chr2_4:57661775-57661794 Msa0337610:CDS 55.0%
GTGCACTAACCACTTGCGCT+AGG + chr2_4:57662219-57662238 Msa0337610:intron 55.0%
AGCAGTAGAGCAGCTAGGTG+TGG + chr2_4:57663046-57663065 Msa0337610:CDS 55.0%
GAAGGTGGCTGGCGATGTTA+TGG - chr2_4:57663127-57663146 None:intergenic 55.0%
GTGAAGCTGAAGCAGCAAGC+TGG + chr2_4:57663494-57663513 Msa0337610:CDS 55.0%
CAGCAAGCTGGAGTCAAAGG+AGG + chr2_4:57663506-57663525 Msa0337610:CDS 55.0%
ATGGGAGGGAAACCCATGGT+TGG - chr2_4:57663595-57663614 None:intergenic 55.0%
ATATTCGCCTCACCAGCCAC+CGG + chr2_4:57663696-57663715 Msa0337610:CDS 55.0%
! CGCTTCGTATTGGCACCAAC+GGG + chr2_4:57663756-57663775 Msa0337610:CDS 55.0%
GCTCCAAATGCACCAACTGC+AGG + chr2_4:57664459-57664478 Msa0337610:CDS 55.0%
GTCAGAGGCTGTGGAAAGCA+TGG - chr2_4:57664489-57664508 None:intergenic 55.0%
ACCGTTGTTGTCAGAGGCTG+TGG - chr2_4:57664498-57664517 None:intergenic 55.0%
!! TTTGGCTCTCCAACCGTTCC+GGG + chr2_4:57664726-57664745 Msa0337610:CDS 55.0%
! CGACAGCACCGGGATCTAAT+TGG - chr2_4:57664776-57664795 None:intergenic 55.0%
AGGCTGAGGAGATGGTTGAC+CGG - chr2_4:57664805-57664824 None:intergenic 55.0%
!! GCTGGAGCTTTAAGGCCAAG+AGG - chr2_4:57665363-57665382 None:intergenic 55.0%
CCCATCACACCTTCAAGTGC+TGG - chr2_4:57665381-57665400 None:intergenic 55.0%
AAGTGAGCTCGAAACGCCAG+AGG - chr2_4:57666875-57666894 None:intergenic 55.0%
!! GGAAGCGGCAAGGGAGTGTT+TGG - chr2_4:57661175-57661194 None:intergenic 60.0%
ATTCTCCCTCAGCAGCGGTG+AGG + chr2_4:57661780-57661799 Msa0337610:CDS 60.0%
CGATTCCTCACCGCTGCTGA+GGG - chr2_4:57661788-57661807 None:intergenic 60.0%
CCTCAGCAGCGGTGAGGAAT+CGG + chr2_4:57661786-57661805 Msa0337610:CDS 60.0%
!! TGGCGATGTTATGGCGGGTG+AGG - chr2_4:57663118-57663137 None:intergenic 60.0%
GTGGCTGGCGATGTTATGGC+GGG - chr2_4:57663123-57663142 None:intergenic 60.0%
GGTGGCTGGCGATGTTATGG+CGG - chr2_4:57663124-57663143 None:intergenic 60.0%
TGGCATGGGAGGGAAACCCA+TGG - chr2_4:57663599-57663618 None:intergenic 60.0%
! GGTGTACTGGTGGCATGGGA+GGG - chr2_4:57663609-57663628 None:intergenic 60.0%
! TGGTGTACTGGTGGCATGGG+AGG - chr2_4:57663610-57663629 None:intergenic 60.0%
! TCACCAGCCACCGGCTAACT+GGG + chr2_4:57663705-57663724 Msa0337610:CDS 60.0%
! GAAGCGTTAGGAGGTGGAGC+CGG - chr2_4:57663742-57663761 None:intergenic 60.0%
TGGTACATGGCATGGGGTGG+TGG - chr2_4:57664756-57664775 None:intergenic 60.0%
TGAGGAGATGGTTGACCGGC+GGG - chr2_4:57664801-57664820 None:intergenic 60.0%
CTGAGGAGATGGTTGACCGG+CGG - chr2_4:57664802-57664821 None:intergenic 60.0%
CCGATTCCTCACCGCTGCTG+AGG - chr2_4:57661789-57661808 None:intergenic 65.0%
!! TGTATGGGGGCACCATCCCG+TGG + chr2_4:57663645-57663664 Msa0337610:CDS 65.0%
CAGTTAGCCGGTGGCTGGTG+AGG - chr2_4:57663706-57663725 None:intergenic 65.0%
! CTCACCAGCCACCGGCTAAC+TGG + chr2_4:57663704-57663723 Msa0337610:CDS 65.0%
GGTGGAATGCCCGGAACGGT+TGG - chr2_4:57664738-57664757 None:intergenic 65.0%
!! GGGTGGTGGAATGCCCGGAA+CGG - chr2_4:57664742-57664761 None:intergenic 65.0%
!! GCATGGGGTGGTGGAATGCC+CGG - chr2_4:57664747-57664766 None:intergenic 65.0%
GAGGAGATGGTTGACCGGCG+GGG - chr2_4:57664800-57664819 None:intergenic 65.0%
GTGCCCAGTTAGCCGGTGGC+TGG - chr2_4:57663711-57663730 None:intergenic 70.0%
GCAGGTGCCCAGTTAGCCGG+TGG - chr2_4:57663715-57663734 None:intergenic 70.0%
CGCGCAGGTGCCCAGTTAGC+CGG - chr2_4:57663718-57663737 None:intergenic 70.0%
CGGCTAACTGGGCACCTGCG+CGG + chr2_4:57663716-57663735 Msa0337610:CDS 70.0%
TAACTGGGCACCTGCGCGGC+CGG + chr2_4:57663720-57663739 Msa0337610:CDS 70.0%
ACCGGCGGGGACGACAGCAC+CGG - chr2_4:57664787-57664806 None:intergenic 75.0%
! CCGGCGGGGACGACAGCACC+GGG - chr2_4:57664786-57664805 None:intergenic 80.0%
!!! CCCGGTGCTGTCGTCCCCGC+CGG + chr2_4:57664783-57664802 Msa0337610:CDS 80.0%
! GGAGGTGGAGCCGGCCGCGC+AGG - chr2_4:57663733-57663752 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 57660876 57666960 57660876 ID=Msa0337610;Name=Msa0337610
chr2_4 mRNA 57660876 57666960 57660876 ID=Msa0337610-mRNA-1;Parent=Msa0337610;Name=Msa0337610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=490|1|1|1|0.83|0.71|7|1511|423
chr2_4 exon 57660876 57661324 57660876 ID=Msa0337610-mRNA-1:exon:17563;Parent=Msa0337610-mRNA-1
chr2_4 exon 57661527 57662053 57661527 ID=Msa0337610-mRNA-1:exon:17564;Parent=Msa0337610-mRNA-1
chr2_4 exon 57663008 57663148 57663008 ID=Msa0337610-mRNA-1:exon:17565;Parent=Msa0337610-mRNA-1
chr2_4 exon 57663460 57663777 57663460 ID=Msa0337610-mRNA-1:exon:17566;Parent=Msa0337610-mRNA-1
chr2_4 exon 57664459 57664515 57664459 ID=Msa0337610-mRNA-1:exon:17567;Parent=Msa0337610-mRNA-1
chr2_4 exon 57664723 57664842 57664723 ID=Msa0337610-mRNA-1:exon:17568;Parent=Msa0337610-mRNA-1
chr2_4 exon 57665300 57666960 57665300 ID=Msa0337610-mRNA-1:exon:17569;Parent=Msa0337610-mRNA-1
chr2_4 five_prime_UTR 57660876 57661324 57660876 ID=Msa0337610-mRNA-1:five_prime_utr;Parent=Msa0337610-mRNA-1
chr2_4 five_prime_UTR 57661527 57661567 57661527 ID=Msa0337610-mRNA-1:five_prime_utr;Parent=Msa0337610-mRNA-1
chr2_4 CDS 57661568 57662053 57661568 ID=Msa0337610-mRNA-1:cds;Parent=Msa0337610-mRNA-1
chr2_4 CDS 57663008 57663148 57663008 ID=Msa0337610-mRNA-1:cds;Parent=Msa0337610-mRNA-1
chr2_4 CDS 57663460 57663777 57663460 ID=Msa0337610-mRNA-1:cds;Parent=Msa0337610-mRNA-1
chr2_4 CDS 57664459 57664515 57664459 ID=Msa0337610-mRNA-1:cds;Parent=Msa0337610-mRNA-1
chr2_4 CDS 57664723 57664842 57664723 ID=Msa0337610-mRNA-1:cds;Parent=Msa0337610-mRNA-1
chr2_4 CDS 57665300 57665449 57665300 ID=Msa0337610-mRNA-1:cds;Parent=Msa0337610-mRNA-1
chr2_4 three_prime_UTR 57665450 57666960 57665450 ID=Msa0337610-mRNA-1:three_prime_utr;Parent=Msa0337610-mRNA-1
Gene Sequence

>Msa0337610

ATGCTAGCAGTAGCACCATTGAGTAGCATAAGAGATGAAAGCCAAAGAGAAATGGAGGAGAATTTATCAATTGAGACATGTGACTTTGCTGATCTTTCTGAAGGGAACTTATTGGAAAGCATCAATTTTGAATTTGATGATGATTTCTTCGTATGCTTCAACGACGGAGATGTGTTACCGGATCTTGAGATGGACCCGGAAATGCTTGCTGAATTCTCCCTCAGCAGCGGTGAGGAATCGGATATAAATTCATCAGGCGCAAATAGCAAATCTTGTAATGATGGGAATATGGTTAGTATTGAGAGAAAATTACAAGATGAAGAGAAAGTAGTTTCTTCTTCAGATTCTGGTTCGAGTCGTGTGGAAGAGATAATTAGCAAAAGAGATGAATCCGTTGTGCCGAATCCATTGCCTAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAGAATAACCCTCATGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCACAGAAGATTCGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATCGCCAGCCACCTTCAAAAATATAGATCGCATAGGAAACATTTGTTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTTTGGAACAAATAGAGGAGTTGGAGGAAAAAGAGATATTGTGAATCATTGGGTTGCACCAACCATGGGTTTCCCTCCCATGCCACCAGTACACCATTTTAGACCTTTACATGTATGGGGGCACCATCCCGTGGATCAGTCGTTTATGCATATGTGGCCTAAATATTCGCCTCACCAGCCACCGGCTAACTGGGCACCTGCGCGGCCGGCTCCACCTCCTAACGCTTCGTATTGGCACCAACGGGCTCCAAATGCACCAACTGCAGGAACACCATGCTTTCCACAGCCTCTGACAACAACGAGATTTGGCTCTCCAACCGTTCCGGGCATTCCACCACCCCATGCCATGTACCAATTAGATCCCGGTGCTGTCGTCCCCGCCGGTCAACCATCTCCTCAGCCTCTCTTAGACTTCCATCCGTCAAAGGAGAGCATCGACGCAGCTATTAGTGATGTATTATCAAAACCATATTTACCGTTGCCTCTTGGCCTTAAAGCTCCAGCACTTGAAGGTGTGATGGGTGAATTACAGAAACAAGGAATTCCAAATATTCCACCATCTTGTGCTTGA
Protein sequence

>Msa0337610

MLAVAPLSSIRDESQREMEENLSIETCDFADLSEGNLLESINFEFDDDFFVCFNDGDVLPDLEMDPEMLAEFSLSSGEESDINSSGANSKSCNDGNMVSIERKLQDEEKVVSSSDSGSSRVEEIISKRDESVVPNPLPKEGEKGRKSSSQSKNNPHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGTNRGVGGKRDIVNHWVAPTMGFPPMPPVHHFRPLHVWGHHPVDQSFMHMWPKYSPHQPPANWAPARPAPPPNASYWHQRAPNAPTAGTPCFPQPLTTTRFGSPTVPGIPPPHAMYQLDPGAVVPAGQPSPQPLLDFHPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQKQGIPNIPPSCA*