AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0745630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0745630 MtrunA17_Chr7g0236891 96.491 171 6 0 1 171 1 171 4.82e-122 341
Msa0745630 MtrunA17_Chr3g0094861 46.154 156 78 1 16 171 169 318 1.33e-33 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0745630 AT3G17609.2 60.000 130 47 2 39 167 22 147 7.32e-44 142
Msa0745630 AT3G17609.3 61.157 121 42 2 48 167 2 118 3.71e-41 135
Msa0745630 AT3G17609.4 74.444 90 22 1 79 167 43 132 5.01e-40 132
Msa0745630 AT3G17609.1 74.444 90 22 1 79 167 44 133 5.22e-40 132
Msa0745630 AT5G11260.1 48.175 137 54 3 31 161 26 151 5.85e-33 115
Msa0745630 AT5G11260.2 48.120 133 52 3 31 157 26 147 3.05e-30 108

Find 70 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATTGTGTAATTGATTA+AGG 0.121343 5_1:-67412571 Msa0745630:three_prime_UTR
ATATAAGGTTCTTCTAAATT+AGG 0.169445 5_1:-67412731 Msa0745630:three_prime_UTR
TGAGATACGTTCTTCTAAAT+TGG 0.194375 5_1:+67412960 None:intergenic
CTTCATCTTCATCTTCTTCA+TGG 0.213050 5_1:-67414640 Msa0745630:CDS
TCTTCCACGGCGGCGCTTGC+CGG 0.245919 5_1:+67413486 None:intergenic
CTTCCACGGCGGCGCTTGCC+GGG 0.275869 5_1:+67413487 None:intergenic
CAAATAGGTTGCTAAGGAAT+AGG 0.306771 5_1:-67413068 Msa0745630:intron
TCATTGCTCTCATCAACTTT+GGG 0.320674 5_1:+67412767 None:intergenic
TTCATTGCTCTCATCAACTT+TGG 0.343653 5_1:+67412766 None:intergenic
TATAAGGTTCTTCTAAATTA+GGG 0.349631 5_1:-67412730 Msa0745630:three_prime_UTR
GATGGGGCCTAAAAGAGTTT+TGG 0.353153 5_1:+67414872 None:intergenic
TGCTCCCGGGGCACTGGTTA+AGG 0.356514 5_1:-67412534 Msa0745630:three_prime_UTR
TAAATTGTGTAATTGATTAA+GGG 0.359378 5_1:-67412570 Msa0745630:three_prime_UTR
GAAGGTTAGACAGGGATATA+AGG 0.362469 5_1:-67412746 Msa0745630:exon
CATTGTGTACCTTCCACATC+TGG 0.376399 5_1:+67413595 None:intergenic
TACTGGTGTTCATAATGAAT+TGG 0.380711 5_1:+67412634 None:intergenic
CTTCTAAATTAGGGCATTGT+GGG 0.383047 5_1:-67412721 Msa0745630:three_prime_UTR
TTCCTTCATCTCAGTATCAT+TGG 0.395557 5_1:+67414682 None:intergenic
TGATTAAGGGTTGTGTTAAC+CGG 0.397964 5_1:-67412557 Msa0745630:three_prime_UTR
TCGGAGCATGGCGTTCTCAT+TGG 0.400151 5_1:+67412930 None:intergenic
GTTGTGTTAACCGGTGCTCC+CGG 0.404620 5_1:-67412548 Msa0745630:three_prime_UTR
ATGAAGGAAGCTGCAACAAC+TGG 0.409191 5_1:-67414668 Msa0745630:CDS
TTTGATTTGTTAACTCAGAA+TGG 0.409238 5_1:+67413563 None:intergenic
CGTCTATGTTCCTTGTCTGC+AGG 0.409298 5_1:+67413460 None:intergenic
CCTATGCCTCCACATAGATT+TGG 0.415132 5_1:-67414605 Msa0745630:intron
AAATAGGTTGCTAAGGAATA+GGG 0.428080 5_1:-67413067 Msa0745630:intron
AACCGGTGCTCCCGGGGCAC+TGG 0.433020 5_1:-67412540 Msa0745630:three_prime_UTR
TGTTACTTGAAATTTCTTTG+AGG 0.443146 5_1:-67414754 Msa0745630:five_prime_UTR
TTGTGTTAACCGGTGCTCCC+GGG 0.453179 5_1:-67412547 Msa0745630:three_prime_UTR
GAGAGCAATGAAGGTTAGAC+AGG 0.455193 5_1:-67412755 Msa0745630:exon
TAAAACAGAGAAGAAAGGTT+TGG 0.458287 5_1:-67414926 Msa0745630:five_prime_UTR
CTTCATCTTCTTCATGGAGT+AGG 0.466765 5_1:-67414634 Msa0745630:CDS
CAACTTCAAGCAGGCTTCCC+CGG 0.470731 5_1:-67413505 Msa0745630:CDS
GTCTATGTTCCTTGTCTGCA+GGG 0.478530 5_1:+67413461 None:intergenic
CGGTTACATTGCTTTGATTG+TGG 0.481791 5_1:+67413533 None:intergenic
AACCAGTGCCCCGGGAGCAC+CGG 0.490537 5_1:+67412538 None:intergenic
GTTAATGCACTTGCAATGTT+GGG 0.495633 5_1:+67414804 None:intergenic
AGCCAATGATACTGAGATGA+AGG 0.496590 5_1:-67414684 Msa0745630:CDS
TGTCTGCAGGGTTTCTTCCA+CGG 0.500164 5_1:+67413473 None:intergenic
AAAGTTGATGAGAGCAATGA+AGG 0.515891 5_1:-67412764 Msa0745630:CDS
TTATGTTACCTTTCGGAGCA+TGG 0.517776 5_1:+67412918 None:intergenic
TCTTCTAAATTAGGGCATTG+TGG 0.522870 5_1:-67412722 Msa0745630:three_prime_UTR
TTCCACGGCGGCGCTTGCCG+GGG 0.522944 5_1:+67413488 None:intergenic
ATTGTCTTTGAAAGAGTGAT+GGG 0.523947 5_1:+67414855 None:intergenic
CCAAATCTATGTGGAGGCAT+AGG 0.526031 5_1:+67414605 None:intergenic
TGTTAATGCACTTGCAATGT+TGG 0.535125 5_1:+67414803 None:intergenic
AGGAACATAGACGTCTCAAA+AGG 0.535376 5_1:-67413450 Msa0745630:intron
CATTGTCTTTGAAAGAGTGA+TGG 0.546775 5_1:+67414854 None:intergenic
GTGTTACAAATAGGTTGCTA+AGG 0.552163 5_1:-67413074 Msa0745630:intron
GATACCTTAACCAGTGCCCC+GGG 0.552240 5_1:+67412530 None:intergenic
TGGAAGAAACCCTGCAGACA+AGG 0.552255 5_1:-67413470 Msa0745630:CDS
TGTGTTAACCGGTGCTCCCG+GGG 0.554531 5_1:-67412546 Msa0745630:three_prime_UTR
AGATACCTTAACCAGTGCCC+CGG 0.559775 5_1:+67412529 None:intergenic
ACCGATGCTCAACTTCAAGC+AGG 0.560214 5_1:-67413514 Msa0745630:CDS
CATGAAGAAGATGAAGATGA+AGG 0.570746 5_1:+67414641 None:intergenic
GTTGCTAAGGAATAGGGTCT+CGG 0.571634 5_1:-67413061 Msa0745630:CDS
AATCTATGTGGAGGCATAGG+AGG 0.581180 5_1:+67414608 None:intergenic
ACACGTAAAACAGAGAAGAA+AGG 0.585758 5_1:-67414931 Msa0745630:five_prime_UTR
GCCTGCTTGAAGTTGAGCAT+CGG 0.588947 5_1:+67413513 None:intergenic
TTCCCCGGCAAGCGCCGCCG+TGG 0.608180 5_1:-67413490 Msa0745630:CDS
TGAGAACGCCATGCTCCGAA+AGG 0.615500 5_1:-67412926 Msa0745630:intron
TTCTAAATTAGGGCATTGTG+GGG 0.623760 5_1:-67412720 Msa0745630:three_prime_UTR
CACTTACCAAATCTATGTGG+AGG 0.634191 5_1:+67414599 None:intergenic
TCTGTTCGAAGTTCCAGATG+TGG 0.639704 5_1:-67413608 Msa0745630:CDS
TGACACTTACCAAATCTATG+TGG 0.640404 5_1:+67414596 None:intergenic
CTGCAGGGTTTCTTCCACGG+CGG 0.647406 5_1:+67413476 None:intergenic
TTCGAAGTTCCAGATGTGGA+AGG 0.651950 5_1:-67413604 Msa0745630:CDS
ATAATAGTGGTACACATGTG+AGG 0.686831 5_1:+67412685 None:intergenic
TTGTCTTTGAAAGAGTGATG+GGG 0.687323 5_1:+67414856 None:intergenic
AGAGCAATGAAGGTTAGACA+GGG 0.702347 5_1:-67412754 Msa0745630:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATTGAATATTGAT+AGG + chr5_1:67412961-67412980 None:intergenic 10.0%
!! TTGTTAAATAAAAATTTAAC+GGG + chr5_1:67413222-67413241 None:intergenic 10.0%
!! ATTATAATTGTAATATGTAT+CGG + chr5_1:67414174-67414193 None:intergenic 10.0%
!! AAGAATATTAAGTATATTGT+TGG - chr5_1:67413074-67413093 Msa0745630:intron 15.0%
!! AAGGTATATATAATATAAGT+TGG - chr5_1:67413136-67413155 Msa0745630:intron 15.0%
!! ATGTCAAATTAAAATTTGAA+GGG + chr5_1:67413679-67413698 None:intergenic 15.0%
!! AATGTCAAATTAAAATTTGA+AGG + chr5_1:67413680-67413699 None:intergenic 15.0%
!! TTAAATTGTGTAATTGATTA+AGG - chr5_1:67414854-67414873 Msa0745630:five_prime_UTR 15.0%
!! TAAATTGTGTAATTGATTAA+GGG - chr5_1:67414855-67414874 Msa0745630:five_prime_UTR 15.0%
!!! ACAAGTTGTTTTTAAATGAT+CGG + chr5_1:67413103-67413122 None:intergenic 20.0%
!! TCAAATTGTTGATGTAAAAA+CGG + chr5_1:67413297-67413316 None:intergenic 20.0%
!! TCAAAATTTGCATTGAATTT+CGG - chr5_1:67413437-67413456 Msa0745630:intron 20.0%
!! AATGCAAAATTGTTACTATT+AGG - chr5_1:67413618-67413637 Msa0745630:CDS 20.0%
!!! TAATATGGACTAAATTGAAT+TGG + chr5_1:67413708-67413727 None:intergenic 20.0%
!! ATATAAGGTTCTTCTAAATT+AGG - chr5_1:67414694-67414713 Msa0745630:CDS 20.0%
!! TATAAGGTTCTTCTAAATTA+GGG - chr5_1:67414695-67414714 Msa0745630:CDS 20.0%
!!! TTTTTGGGAAATAATAATAC+TGG + chr5_1:67414811-67414830 None:intergenic 20.0%
!!! ATGTAATCTATCAGTTTTTT+GGG + chr5_1:67414826-67414845 None:intergenic 20.0%
!!! AATGTAATCTATCAGTTTTT+TGG + chr5_1:67414827-67414846 None:intergenic 20.0%
!! TGTTACTTGAAATTTCTTTG+AGG - chr5_1:67412671-67412690 Msa0745630:three_prime_UTR 25.0%
!! CATATTTTATCCTCAAGTTA+AGG - chr5_1:67412902-67412921 Msa0745630:intron 25.0%
!! AAATAAAAGACCTTAACTTG+AGG + chr5_1:67412915-67412934 None:intergenic 25.0%
! TATGAAGAATCTTGTAAGTT+TGG + chr5_1:67413005-67413024 None:intergenic 25.0%
! ACTTGTTTCATGAAAAGTAA+AGG - chr5_1:67413117-67413136 Msa0745630:intron 25.0%
!!! ATATAAGTTGGTCCATATTA+AGG - chr5_1:67413148-67413167 Msa0745630:intron 25.0%
!!! TATAAGTTGGTCCATATTAA+GGG - chr5_1:67413149-67413168 Msa0745630:intron 25.0%
! TATGCGTGTGTATATTATAA+GGG + chr5_1:67413176-67413195 None:intergenic 25.0%
! ATATGCGTGTGTATATTATA+AGG + chr5_1:67413177-67413196 None:intergenic 25.0%
! TACACACGCATATATTAAAT+TGG - chr5_1:67413184-67413203 Msa0745630:intron 25.0%
! AACTTTGTGATATGATATTG+TGG + chr5_1:67413334-67413353 None:intergenic 25.0%
! AACTACAGACAATTCAAATT+TGG - chr5_1:67413513-67413532 Msa0745630:CDS 25.0%
! AAAACAAGTCACGTTTAATA+TGG + chr5_1:67413723-67413742 None:intergenic 25.0%
!!! TTTGATTTGTTAACTCAGAA+TGG + chr5_1:67413865-67413884 None:intergenic 25.0%
!! AAATGACTTGTGTTACAAAT+AGG - chr5_1:67414342-67414361 Msa0745630:intron 25.0%
! ATAACATCATGTTGATCAAA+TGG - chr5_1:67414588-67414607 Msa0745630:intron 25.0%
! TCAAATGGAAATTTATTCGA+TGG - chr5_1:67414603-67414622 Msa0745630:intron 25.0%
TAAAACAGAGAAGAAAGGTT+TGG - chr5_1:67412499-67412518 Msa0745630:three_prime_UTR 30.0%
! TTCTGAACCAAAACTCTTTT+AGG - chr5_1:67412546-67412565 Msa0745630:three_prime_UTR 30.0%
! ATTGTCTTTGAAAGAGTGAT+GGG + chr5_1:67412573-67412592 None:intergenic 30.0%
AATCTTGTAAGTTTGGACTT+TGG + chr5_1:67412998-67413017 None:intergenic 30.0%
!! ATAAGTTGGTCCATATTAAG+GGG - chr5_1:67413150-67413169 Msa0745630:intron 30.0%
ATGATTATCGATCATTGTGA+AGG + chr5_1:67413363-67413382 None:intergenic 30.0%
ACATTAACATGTGCTAACAT+TGG + chr5_1:67413539-67413558 None:intergenic 30.0%
AATAGTGACTATAGAGTGTA+AGG + chr5_1:67414035-67414054 None:intergenic 30.0%
GTCTGACTTTACTTATCTTT+CGG - chr5_1:67414287-67414306 Msa0745630:intron 30.0%
AAATAGGTTGCTAAGGAATA+GGG - chr5_1:67414358-67414377 Msa0745630:intron 30.0%
!!! GTACACTTTTTTTCTTTCAC+GGG + chr5_1:67414399-67414418 None:intergenic 30.0%
!!! CGTACACTTTTTTTCTTTCA+CGG + chr5_1:67414400-67414419 None:intergenic 30.0%
TGAGATACGTTCTTCTAAAT+TGG + chr5_1:67414468-67414487 None:intergenic 30.0%
GTTCAGATTATGTTACCTTT+CGG + chr5_1:67414517-67414536 None:intergenic 30.0%
TACTGGTGTTCATAATGAAT+TGG + chr5_1:67414794-67414813 None:intergenic 30.0%
! CTGGTTAAGGTATCTAAAAA+AGG - chr5_1:67414904-67414923 Msa0745630:five_prime_UTR 30.0%
ACACGTAAAACAGAGAAGAA+AGG - chr5_1:67412494-67412513 Msa0745630:three_prime_UTR 35.0%
! TTGTCTTTGAAAGAGTGATG+GGG + chr5_1:67412572-67412591 None:intergenic 35.0%
! CATTGTCTTTGAAAGAGTGA+TGG + chr5_1:67412574-67412593 None:intergenic 35.0%
GTTAATGCACTTGCAATGTT+GGG + chr5_1:67412624-67412643 None:intergenic 35.0%
TGTTAATGCACTTGCAATGT+TGG + chr5_1:67412625-67412644 None:intergenic 35.0%
TTCCTTCATCTCAGTATCAT+TGG + chr5_1:67412746-67412765 None:intergenic 35.0%
CATGAAGAAGATGAAGATGA+AGG + chr5_1:67412787-67412806 None:intergenic 35.0%
CTTCATCTTCATCTTCTTCA+TGG - chr5_1:67412785-67412804 Msa0745630:CDS 35.0%
TGACACTTACCAAATCTATG+TGG + chr5_1:67412832-67412851 None:intergenic 35.0%
TATTGATAGGCTCTTGACTT+AGG + chr5_1:67412948-67412967 None:intergenic 35.0%
ATTATAAGGGCCCCTTAATA+TGG + chr5_1:67413163-67413182 None:intergenic 35.0%
ATTATCGATCATTGTGAAGG+TGG + chr5_1:67413360-67413379 None:intergenic 35.0%
ATAGACGTCTCAAAAGGTAA+GGG - chr5_1:67413981-67414000 Msa0745630:intron 35.0%
CTCAAACGATTGTTGAACTT+CGG - chr5_1:67414222-67414241 Msa0745630:intron 35.0%
GTGTTACAAATAGGTTGCTA+AGG - chr5_1:67414351-67414370 Msa0745630:intron 35.0%
CAAATAGGTTGCTAAGGAAT+AGG - chr5_1:67414357-67414376 Msa0745630:intron 35.0%
!! TTCGATGGTTTTACTTGTAC+AGG - chr5_1:67414618-67414637 Msa0745630:CDS 35.0%
TCATTGCTCTCATCAACTTT+GGG + chr5_1:67414661-67414680 None:intergenic 35.0%
TTCATTGCTCTCATCAACTT+TGG + chr5_1:67414662-67414681 None:intergenic 35.0%
!! AAAGTTGATGAGAGCAATGA+AGG - chr5_1:67414661-67414680 Msa0745630:CDS 35.0%
!! TCTTCTAAATTAGGGCATTG+TGG - chr5_1:67414703-67414722 Msa0745630:exon 35.0%
!! CTTCTAAATTAGGGCATTGT+GGG - chr5_1:67414704-67414723 Msa0745630:exon 35.0%
!! TTCTAAATTAGGGCATTGTG+GGG - chr5_1:67414705-67414724 Msa0745630:exon 35.0%
ATAATAGTGGTACACATGTG+AGG + chr5_1:67414743-67414762 None:intergenic 35.0%
TGATTAAGGGTTGTGTTAAC+CGG - chr5_1:67414868-67414887 Msa0745630:five_prime_UTR 35.0%
AGCCAATGATACTGAGATGA+AGG - chr5_1:67412741-67412760 Msa0745630:exon 40.0%
CTTCATCTTCTTCATGGAGT+AGG - chr5_1:67412791-67412810 Msa0745630:intron 40.0%
CACTTACCAAATCTATGTGG+AGG + chr5_1:67412829-67412848 None:intergenic 40.0%
AGATCTTCATCGCTATCATC+TGG + chr5_1:67413800-67413819 None:intergenic 40.0%
CGGTTACATTGCTTTGATTG+TGG + chr5_1:67413895-67413914 None:intergenic 40.0%
AGGAACATAGACGTCTCAAA+AGG - chr5_1:67413975-67413994 Msa0745630:intron 40.0%
CATAGACGTCTCAAAAGGTA+AGG - chr5_1:67413980-67413999 Msa0745630:intron 40.0%
!! TTTTCTTTCACGGGCTTGTT+GGG + chr5_1:67414390-67414409 None:intergenic 40.0%
! TTTTTCTTTCACGGGCTTGT+TGG + chr5_1:67414391-67414410 None:intergenic 40.0%
TTATGTTACCTTTCGGAGCA+TGG + chr5_1:67414510-67414529 None:intergenic 40.0%
AGAGCAATGAAGGTTAGACA+GGG - chr5_1:67414671-67414690 Msa0745630:CDS 40.0%
GAAGGTTAGACAGGGATATA+AGG - chr5_1:67414679-67414698 Msa0745630:CDS 40.0%
! GATGGGGCCTAAAAGAGTTT+TGG + chr5_1:67412556-67412575 None:intergenic 45.0%
ATGAAGGAAGCTGCAACAAC+TGG - chr5_1:67412757-67412776 Msa0745630:exon 45.0%
! AATCTATGTGGAGGCATAGG+AGG + chr5_1:67412820-67412839 None:intergenic 45.0%
! CCAAATCTATGTGGAGGCAT+AGG + chr5_1:67412823-67412842 None:intergenic 45.0%
CCTATGCCTCCACATAGATT+TGG - chr5_1:67412820-67412839 Msa0745630:intron 45.0%
GGTGACAGTTGGATCTAGAT+TGG + chr5_1:67413467-67413486 None:intergenic 45.0%
TAGATCCAACTGTCACCTGA+GGG - chr5_1:67413470-67413489 Msa0745630:CDS 45.0%
TCTGTTCGAAGTTCCAGATG+TGG - chr5_1:67413817-67413836 Msa0745630:intron 45.0%
TTCGAAGTTCCAGATGTGGA+AGG - chr5_1:67413821-67413840 Msa0745630:intron 45.0%
CATTGTGTACCTTCCACATC+TGG + chr5_1:67413833-67413852 None:intergenic 45.0%
GTCTATGTTCCTTGTCTGCA+GGG + chr5_1:67413967-67413986 None:intergenic 45.0%
GTTGCTAAGGAATAGGGTCT+CGG - chr5_1:67414364-67414383 Msa0745630:intron 45.0%
GAGAGCAATGAAGGTTAGAC+AGG - chr5_1:67414670-67414689 Msa0745630:CDS 45.0%
!! ATTGTTAAATAAAAATTTAA+CGG + chr5_1:67413223-67413242 None:intergenic 5.0%
!!! ATTTTATAAATATATAATAG+TGG + chr5_1:67414756-67414775 None:intergenic 5.0%
CTAGATCCAACTGTCACCTG+AGG - chr5_1:67413469-67413488 Msa0745630:CDS 50.0%
ACCGATGCTCAACTTCAAGC+AGG - chr5_1:67413911-67413930 Msa0745630:intron 50.0%
GCCTGCTTGAAGTTGAGCAT+CGG + chr5_1:67413915-67413934 None:intergenic 50.0%
TGTCTGCAGGGTTTCTTCCA+CGG + chr5_1:67413955-67413974 None:intergenic 50.0%
TGGAAGAAACCCTGCAGACA+AGG - chr5_1:67413955-67413974 Msa0745630:intron 50.0%
CGTCTATGTTCCTTGTCTGC+AGG + chr5_1:67413968-67413987 None:intergenic 50.0%
AGATACCTTAACCAGTGCCC+CGG + chr5_1:67414899-67414918 None:intergenic 50.0%
TCACTCCCTCAGGTGACAGT+TGG + chr5_1:67413478-67413497 None:intergenic 55.0%
TCTCGTGCATTCACTCCCTC+AGG + chr5_1:67413488-67413507 None:intergenic 55.0%
CAACTTCAAGCAGGCTTCCC+CGG - chr5_1:67413920-67413939 Msa0745630:intron 55.0%
TCGGAGCATGGCGTTCTCAT+TGG + chr5_1:67414498-67414517 None:intergenic 55.0%
TGAGAACGCCATGCTCCGAA+AGG - chr5_1:67414499-67414518 Msa0745630:intron 55.0%
GTTGTGTTAACCGGTGCTCC+CGG - chr5_1:67414877-67414896 Msa0745630:five_prime_UTR 55.0%
TTGTGTTAACCGGTGCTCCC+GGG - chr5_1:67414878-67414897 Msa0745630:five_prime_UTR 55.0%
GATACCTTAACCAGTGCCCC+GGG + chr5_1:67414898-67414917 None:intergenic 55.0%
CTGCAGGGTTTCTTCCACGG+CGG + chr5_1:67413952-67413971 None:intergenic 60.0%
TGTGTTAACCGGTGCTCCCG+GGG - chr5_1:67414879-67414898 Msa0745630:five_prime_UTR 60.0%
!! TGCTCCCGGGGCACTGGTTA+AGG - chr5_1:67414891-67414910 Msa0745630:five_prime_UTR 65.0%
TCTTCCACGGCGGCGCTTGC+CGG + chr5_1:67413942-67413961 None:intergenic 70.0%
! AACCAGTGCCCCGGGAGCAC+CGG + chr5_1:67414890-67414909 None:intergenic 70.0%
TTCCACGGCGGCGCTTGCCG+GGG + chr5_1:67413940-67413959 None:intergenic 75.0%
CTTCCACGGCGGCGCTTGCC+GGG + chr5_1:67413941-67413960 None:intergenic 75.0%
AACCGGTGCTCCCGGGGCAC+TGG - chr5_1:67414885-67414904 Msa0745630:five_prime_UTR 75.0%
!! TTCCCCGGCAAGCGCCGCCG+TGG - chr5_1:67413935-67413954 Msa0745630:intron 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 67412483 67414964 67412483 ID=Msa0745630;Name=Msa0745630
chr5_1 mRNA 67412483 67414964 67412483 ID=Msa0745630-mRNA-1;Parent=Msa0745630;Name=Msa0745630-mRNA-1;_AED=0.17;_eAED=0.17;_QI=244|1|1|1|1|1|4|277|171
chr5_1 exon 67412483 67412807 67412483 ID=Msa0745630-mRNA-1:exon:20027;Parent=Msa0745630-mRNA-1
chr5_1 exon 67412927 67413083 67412927 ID=Msa0745630-mRNA-1:exon:20026;Parent=Msa0745630-mRNA-1
chr5_1 exon 67413451 67413646 67413451 ID=Msa0745630-mRNA-1:exon:20025;Parent=Msa0745630-mRNA-1
chr5_1 exon 67414606 67414964 67414606 ID=Msa0745630-mRNA-1:exon:20024;Parent=Msa0745630-mRNA-1
chr5_1 five_prime_UTR 67414721 67414964 67414721 ID=Msa0745630-mRNA-1:five_prime_utr;Parent=Msa0745630-mRNA-1
chr5_1 CDS 67414606 67414720 67414606 ID=Msa0745630-mRNA-1:cds;Parent=Msa0745630-mRNA-1
chr5_1 CDS 67413451 67413646 67413451 ID=Msa0745630-mRNA-1:cds;Parent=Msa0745630-mRNA-1
chr5_1 CDS 67412927 67413083 67412927 ID=Msa0745630-mRNA-1:cds;Parent=Msa0745630-mRNA-1
chr5_1 CDS 67412760 67412807 67412760 ID=Msa0745630-mRNA-1:cds;Parent=Msa0745630-mRNA-1
chr5_1 three_prime_UTR 67412483 67412759 67412483 ID=Msa0745630-mRNA-1:three_prime_utr;Parent=Msa0745630-mRNA-1
Gene Sequence

>Msa0745630

ATGTCTCTTTCAAGAGCCAATGATACTGAGATGAAGGAAGCTGCAACAACTGGAGCACCTTCATCTTCATCTTCTTCATGGAGTAGGTTACCTCCTATGCCTCCACATAGATTTGATGATAGCGATGAAGATCTGTTCGAAGTTCCAGATGTGGAAGGTACACAATGTCAAAGTGTCCATTCTGAGTTAACAAATCAAAATAGTAACCACAATCAAAGCAATGTAACCGATGCTCAACTTCAAGCAGGCTTCCCCGGCAAGCGCCGCCGTGGAAGAAACCCTGCAGACAAGGAACATAGACGTCTCAAAAGGTTGCTAAGGAATAGGGTCTCGGCCCAACAAGCCCGTGAAAGAAAAAAAGTGTACGTGAATGACTTAGAATCAAGAGCTAAAGAGTTTGAAGATAAGAACTCCAATTTAGAAGAACGTATCTCAACTTTGACCAATGAGAACGCCATGCTCCGAAAGGTTCTTATGAACACTAGACCCAAAGTTGATGAGAGCAATGAAGGTTAG

Protein sequence

>Msa0745630

MSLSRANDTEMKEAATTGAPSSSSSSWSRLPPMPPHRFDDSDEDLFEVPDVEGTQCQSVHSELTNQNSNHNQSNVTDAQLQAGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKEFEDKNSNLEERISTLTNENAMLRKVLMNTRPKVDESNEG*