AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0069590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069590 MtrunA17_Chr1g0173381 100.000 1383 0 0 1 1383 1 1383 0.0 2855
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0069590 AT5G13630.1 85.177 1383 203 1 1 1383 1 1381 0.0 2480
Msa0069590 AT5G13630.2 84.841 1260 189 1 1 1260 1 1258 0.0 2247

Find 351 sgRNAs with CRISPR-Local

Find 489 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACCTTGTTCAAAATTTA+AGG 0.029079 1_2:+38548013 Msa0069590:CDS
TTTCCTGTTGGTAAAACTTT+AGG 0.150723 1_2:-38547021 None:intergenic
CCAAGCTCTTCAAGGCTTAC+AGG 0.177877 1_2:-38547291 None:intergenic
CAATCTCTCTACCACTATTT+TGG 0.194233 1_2:-38547100 None:intergenic
CCTATCACCTCGGTAAAATT+TGG 0.197602 1_2:-38546860 None:intergenic
CCACAGCATTAGAAGAAAAT+TGG 0.204481 1_2:+38545843 Msa0069590:CDS
CTCACTGGATTTGCTCTTGT+TGG 0.205906 1_2:+38544117 Msa0069590:CDS
AATTTCTTGAAGATGATTTC+TGG 0.209710 1_2:+38543718 Msa0069590:CDS
CATATCTTTATATATAAAAT+TGG 0.211882 1_2:-38549038 None:intergenic
AGTTGATCAACTTTAGAATT+TGG 0.219361 1_2:-38542980 None:intergenic
TTAGAATTTGGTAGAGTAAA+TGG 0.219936 1_2:-38542968 None:intergenic
TCTAACCCTCCGGCGAAAAT+TGG 0.230220 1_2:-38544021 None:intergenic
TTCCTGTTGGTAAAACTTTA+GGG 0.231681 1_2:-38547020 None:intergenic
TCCAATGAAAACGGTTTCTA+TGG 0.257552 1_2:-38542644 None:intergenic
ACAAATGGTTTCTTAGTAAT+AGG 0.269270 1_2:-38544078 None:intergenic
CAAAGGAGTCATATTGTTAC+TGG 0.270706 1_2:+38543937 Msa0069590:CDS
TTTCACACTATTATATATAA+TGG 0.272037 1_2:-38549064 None:intergenic
ATGATGAGGGCTTGCAGATT+TGG 0.274240 1_2:-38545996 None:intergenic
AAGAAATTCTGCAAATTATC+AGG 0.274265 1_2:-38543703 None:intergenic
ATATCTTGAGTCTACAGTTT+TGG 0.275285 1_2:+38543668 Msa0069590:CDS
TCTTCTTCAGATGAATCTTC+TGG 0.278031 1_2:+38547606 Msa0069590:intron
CTCATCCCTACCTGCTTTCC+AGG 0.282649 1_2:-38546109 None:intergenic
AAGCCAATGGACGCGGATAT+TGG 0.283143 1_2:+38548708 Msa0069590:CDS
TCATTACGTTGCTGTGATTA+TGG 0.283792 1_2:+38543969 Msa0069590:CDS
TATAAAATTGGAAGATATAT+TGG 0.287686 1_2:-38549026 None:intergenic
GCTGATGCTGTTCTTCATTT+CGG 0.304689 1_2:+38546061 Msa0069590:CDS
GCATTTGCAACTGCACAAAA+AGG 0.305978 1_2:-38548990 None:intergenic
GGACAGGATGGATGCAGTTT+TGG 0.317279 1_2:+38543432 Msa0069590:CDS
TTGTAAGCAATGTTGAGATT+TGG 0.321057 1_2:-38545782 None:intergenic
TTTCCGATGAGTCAAGGTTT+TGG 0.325504 1_2:-38547948 None:intergenic
AACATGCCTTCATACCATTT+GGG 0.328582 1_2:-38548488 None:intergenic
GGTGATGAGGTTGAACAAAT+TGG 0.329239 1_2:+38543474 Msa0069590:CDS
CAGTGACAAAGGAGTATTAA+AGG 0.335696 1_2:+38546672 Msa0069590:CDS
GCTCAGGTTCTGTGGATGAT+TGG 0.337444 1_2:+38547222 Msa0069590:CDS
AGTGGCAAAGCAACAATATA+AGG 0.338462 1_2:-38544198 None:intergenic
GTTGGATGGAGTGCAACTTC+TGG 0.339333 1_2:+38548563 Msa0069590:CDS
TAACATGCCTTCATACCATT+TGG 0.343041 1_2:-38548489 None:intergenic
TATGGTTAGTGGTGAAAGTT+TGG 0.345707 1_2:-38542626 None:intergenic
CTTCTGGACAAGTTGACAAT+TGG 0.346443 1_2:+38548579 Msa0069590:CDS
CTCATCACCTCAGGCATTGA+TGG 0.348300 1_2:-38543460 None:intergenic
ACACTCTGAGCTAGTATAGA+AGG 0.354279 1_2:-38546619 None:intergenic
CACAGCATTAGAAGAAAATT+GGG 0.354684 1_2:+38545844 Msa0069590:CDS
GAAGATGCTAATATCTTCAT+TGG 0.357021 1_2:+38543349 Msa0069590:CDS
GTTCCTACATTTCCTTTGTC+TGG 0.357797 1_2:-38545614 None:intergenic
GAAGCTGGTGCAAACATTCT+TGG 0.362090 1_2:+38548685 Msa0069590:CDS
TGTAAGCAATGTTGAGATTT+GGG 0.367376 1_2:-38545781 None:intergenic
CACAGCCAGGTTTATGTTTG+AGG 0.367959 1_2:-38547776 None:intergenic
GCACAAATCCCAACTCCTTC+AGG 0.369393 1_2:+38548663 Msa0069590:CDS
ATCGGGTCGCCTCCAGGTCC+TGG 0.370873 1_2:-38546991 None:intergenic
AACCAAGTTTCAGAGAAATA+AGG 0.371756 1_2:-38548858 None:intergenic
TGCATTGCATTTCAATCTAA+AGG 0.373359 1_2:-38543083 None:intergenic
CTCTGCTGGTTCGTCTAATT+CGG 0.375638 1_2:-38547650 None:intergenic
AAATGCACCTGTTGTTGGTT+TGG 0.377667 1_2:+38543909 Msa0069590:CDS
ATATATTGGCCAAGTTTGTT+TGG 0.380572 1_2:-38549012 None:intergenic
TGTTGGAGGGCCTGCTAGGC+AGG 0.382146 1_2:+38544134 Msa0069590:CDS
GTTCAAAATTTAAGGAAAGA+TGG 0.385666 1_2:+38548021 Msa0069590:CDS
GCAGCATAGTAATAGACATT+TGG 0.387540 1_2:-38546169 None:intergenic
AAACTTTAGGGTTTCTGATC+GGG 0.387766 1_2:-38547008 None:intergenic
GGAGAGAATCTGTTGGTATA+TGG 0.388264 1_2:+38545896 Msa0069590:CDS
TGAATTGGTATGGAACTAGA+AGG 0.388661 1_2:+38543860 Msa0069590:CDS
AACAAGATCTCGCTCTTTAG+TGG 0.389853 1_2:-38546440 None:intergenic
ATAGGTGTTCAACCTACATT+TGG 0.390010 1_2:+38545941 Msa0069590:CDS
CTTGGATGATCCTGCCTAGC+AGG 0.390906 1_2:-38544144 None:intergenic
TTTCTGATCGGGTCGCCTCC+AGG 0.395290 1_2:-38546997 None:intergenic
TCAACCACTCTTCAGTTGTC+TGG 0.395716 1_2:-38544227 None:intergenic
ACTTGAAGAGCAACTTGAAT+TGG 0.395908 1_2:-38544270 None:intergenic
AGCCAATGGACGCGGATATT+GGG 0.396390 1_2:+38548709 Msa0069590:CDS
CCTAAGAAAACCAATTACTA+TGG 0.396414 1_2:+38543046 Msa0069590:CDS
CTGATACCTGATTGATGAAA+AGG 0.396424 1_2:-38547362 None:intergenic
CTTACATAGTTCATCTCTGC+TGG 0.399333 1_2:-38547664 None:intergenic
TTGGTATATGGTAAGCAATA+TGG 0.404856 1_2:+38545908 Msa0069590:CDS
AATTGCTCCGCGTGATGCTT+CGG 0.405221 1_2:-38546719 None:intergenic
TTATATTGTTGCTTTGCCAC+TGG 0.407521 1_2:+38544200 Msa0069590:CDS
TTACAATAAAGAGCAAGTTT+TGG 0.407523 1_2:-38542870 None:intergenic
GACGTTGTCGTTAATTGCTC+TGG 0.408163 1_2:+38547327 Msa0069590:CDS
CAGGTTTATGTTTGAGGAGT+AGG 0.410638 1_2:-38547770 None:intergenic
ACTGGATTTGCTCTTGTTGG+AGG 0.412121 1_2:+38544120 Msa0069590:CDS
AGTTCAAATGCACCTGTTGT+TGG 0.412786 1_2:+38543904 Msa0069590:CDS
ATCTTTGTACCTTTCAATGC+TGG 0.413975 1_2:-38543751 None:intergenic
GAGTGGTTGAATAGTACTTT+GGG 0.415105 1_2:+38544240 Msa0069590:CDS
AAAGAGCGAGATCTTGTTGT+TGG 0.415342 1_2:+38546445 Msa0069590:CDS
CTGGATTTGCTCTTGTTGGA+GGG 0.415619 1_2:+38544121 Msa0069590:CDS
TAAAGGATGTAGAGCTTCTT+CGG 0.416816 1_2:+38546689 Msa0069590:CDS
CCTTGTGGACTCCATGTCAT+TGG 0.417130 1_2:+38546511 Msa0069590:CDS
AAATTTGGGTTGATGATCAA+TGG 0.418917 1_2:+38542928 Msa0069590:exon
CTAGTGGTTATGAGGGTGTT+CGG 0.420010 1_2:+38548513 Msa0069590:CDS
ACCAGCTTCCTGAAGGAGTT+GGG 0.423566 1_2:-38548671 None:intergenic
AGATTGAAATGCAATGCAAT+TGG 0.427450 1_2:+38543088 Msa0069590:CDS
AAGAAGAATACTTCTTCAGC+TGG 0.430435 1_2:+38543556 Msa0069590:CDS
CAATATGGTAATGTATTCAT+AGG 0.430782 1_2:+38545923 Msa0069590:CDS
GCTTTCCAGGCATGAATTCA+AGG 0.431681 1_2:-38546096 None:intergenic
AAAGAGTATTTGAATTGGTA+TGG 0.436541 1_2:+38543850 Msa0069590:CDS
GGAAGCTCCACACCCTCCTC+TGG 0.436994 1_2:-38546418 None:intergenic
AGTACAAGGGCAACTGTCTC+AGG 0.436994 1_2:-38547159 None:intergenic
GATTGTGATGCTCCTGGTGC+AGG 0.439076 1_2:+38547868 Msa0069590:CDS
TAGGTCTTCCAAGCTCTTCA+AGG 0.440235 1_2:-38547299 None:intergenic
TGGCTGTGGAGAATTCTTCA+TGG 0.440253 1_2:+38547791 Msa0069590:CDS
CGAAAATGCAGGACTGTACA+AGG 0.441945 1_2:+38546267 Msa0069590:CDS
CACCAGCTTCCTGAAGGAGT+TGG 0.442281 1_2:-38548672 None:intergenic
CTCTACAAATTTACCTTCCA+AGG 0.442552 1_2:-38546968 None:intergenic
TGGAGGAGTAAGATAGCTTA+TGG 0.442966 1_2:-38546242 None:intergenic
TAGTGGTTATGAGGGTGTTC+GGG 0.443943 1_2:+38548514 Msa0069590:CDS
TGGTTATAAGGGAAAGCTAA+TGG 0.444167 1_2:-38542850 None:intergenic
TTCTGCTAAGGTACATGTCT+TGG 0.445406 1_2:-38547831 None:intergenic
TTGGCTATGGTAGCCTCTGA+AGG 0.445632 1_2:-38546199 None:intergenic
GAAAATTGGGGAAAGCCTCC+TGG 0.445986 1_2:+38545857 Msa0069590:CDS
ACAGATAATATTAAGACATA+TGG 0.446503 1_2:+38547189 Msa0069590:CDS
CGTGGCAAACATGTAGTCAT+TGG 0.447519 1_2:-38542599 None:intergenic
GCTGGTCGGGATCCCAAAAC+AGG 0.449426 1_2:+38544336 Msa0069590:CDS
AAATGCAATGCAATTGGTAA+TGG 0.450220 1_2:+38543094 Msa0069590:CDS
ATCAAAGCTTCAATAGCCCT+TGG 0.450638 1_2:-38544162 None:intergenic
AGCAACTGCTTCCATGGCTG+TGG 0.450885 1_2:-38546542 None:intergenic
GGGAAGTTTAAAACAAGCCT+TGG 0.450982 1_2:+38546951 Msa0069590:CDS
GCATCTTGAGCTTTATCACT+TGG 0.453125 1_2:-38543637 None:intergenic
CATGGAGTCCACAAGGCAAC+AGG 0.453384 1_2:-38546504 None:intergenic
GGGAAAGCTAATGGTATTTG+AGG 0.457304 1_2:-38542841 None:intergenic
CTCTTGTTGGAGGGCCTGCT+AGG 0.457536 1_2:+38544130 Msa0069590:CDS
ATTTGCGTAGCTCCTGCGTT+TGG 0.458715 1_2:-38546218 None:intergenic
GTTGCATTGCCAGAGCTAGA+TGG 0.458979 1_2:+38544291 Msa0069590:CDS
CTTACCTCCATCCTTGGATT+CGG 0.459055 1_2:+38546802 Msa0069590:CDS
TCCCAACTCCTTCAGGAAGC+TGG 0.459347 1_2:+38548670 Msa0069590:CDS
AGAGTGGTTGAATAGTACTT+TGG 0.460158 1_2:+38544239 Msa0069590:CDS
TTCAAAATTTAAGGAAAGAT+GGG 0.460190 1_2:+38548022 Msa0069590:CDS
AATAAACTTACCTCCATCCT+TGG 0.461503 1_2:+38546796 Msa0069590:CDS
TTCTGGACAAGTTGACAATT+GGG 0.462149 1_2:+38548580 Msa0069590:CDS
ATAGTTTCTTCCAATGAAAA+CGG 0.462623 1_2:-38542653 None:intergenic
CTACATTTCCTTTGTCTGGC+GGG 0.463784 1_2:-38545610 None:intergenic
GTCTTGAATGAATGTTGTGT+TGG 0.464042 1_2:-38548615 None:intergenic
CTCTCCATTGCTGCTGTAGT+AGG 0.464264 1_2:-38547075 None:intergenic
GGTAAATACTTCAAAACCTT+AGG 0.465580 1_2:-38543616 None:intergenic
GGTTCCCTTGAATTCATGCC+TGG 0.466716 1_2:+38546091 Msa0069590:CDS
TCTTCTAATGCTGTGGCATA+GGG 0.468263 1_2:-38545836 None:intergenic
AAATGGAGGAGAAAACGTTT+AGG 0.469039 1_2:-38545646 None:intergenic
CAATGTAGCAACTGCTTCCA+TGG 0.470298 1_2:-38546548 None:intergenic
AGTACTTGGGAGAATGTTTG+AGG 0.471779 1_2:+38546905 Msa0069590:CDS
CATACATACAAGGTGCTAAA+GGG 0.474043 1_2:-38543819 None:intergenic
TGAGAAACACAACTCAACTT+TGG 0.474199 1_2:+38542778 Msa0069590:five_prime_UTR
TTCTTCTAATGCTGTGGCAT+AGG 0.474834 1_2:-38545837 None:intergenic
CAGCAGAGATGAACTATGTA+AGG 0.475157 1_2:+38547665 Msa0069590:CDS
TACCTTATTTCTCTGAAACT+TGG 0.477509 1_2:+38548856 Msa0069590:three_prime_UTR
TTGCAAATGCCAAACAAACT+TGG 0.478518 1_2:+38549003 Msa0069590:three_prime_UTR
TGAATTCATGCCTGGAAAGC+AGG 0.481681 1_2:+38546099 Msa0069590:CDS
TAGGAATAGATTGTGGATCC+AGG 0.482376 1_2:-38547056 None:intergenic
AGAGCGCACTACTAATAGTA+AGG 0.482393 1_2:+38546753 Msa0069590:CDS
AATCAATGCTTCTGAAGTCT+CGG 0.483709 1_2:-38545720 None:intergenic
GAGTGGAGCAGCTTTGCACC+AGG 0.483821 1_2:+38544850 Msa0069590:CDS
TGCAAAACCAAACCAACAAC+AGG 0.486344 1_2:-38543916 None:intergenic
CATGGAAGCAGTTGCTACAT+TGG 0.487820 1_2:+38546549 Msa0069590:CDS
TTCCCAATATCCGCGTCCAT+TGG 0.488102 1_2:-38548711 None:intergenic
TACATTAACAATGATGCCAT+TGG 0.489859 1_2:-38548905 None:intergenic
CATGTTATCTAGTGGTTATG+AGG 0.489935 1_2:+38548505 Msa0069590:CDS
AAAACGGTTTCTATGGTTAG+TGG 0.490304 1_2:-38542637 None:intergenic
TCCATTCCTCCATCTAGCTC+TGG 0.490366 1_2:-38544300 None:intergenic
GTAGCTCCTGCGTTTGGCTA+TGG 0.491501 1_2:-38546212 None:intergenic
TATCTGTTCCCCACAGTACA+AGG 0.491790 1_2:-38547173 None:intergenic
TACCTGGGCATTGGCAGTGG+TGG 0.492165 1_2:-38548073 None:intergenic
AATCCCTTGCTCAGGTTCTG+TGG 0.492849 1_2:+38547214 Msa0069590:CDS
CCAAGCTGTTGAACCCCAAA+TGG 0.494653 1_2:+38548474 Msa0069590:CDS
TCATACATACAAGGTGCTAA+AGG 0.498214 1_2:-38543820 None:intergenic
AGTGATGGTTACAATGTTGA+AGG 0.498990 1_2:+38545692 Msa0069590:CDS
CCATTTGGGGTTCAACAGCT+TGG 0.501266 1_2:-38548474 None:intergenic
AAGCTGCTGTTGAGAAAGAA+AGG 0.502411 1_2:+38543410 Msa0069590:CDS
GATATCACAGAATTCACAAA+TGG 0.502956 1_2:-38544093 None:intergenic
TTTCCAAAACCTTGACTCAT+CGG 0.503416 1_2:+38547945 Msa0069590:CDS
ATGAAGAATTCTCCACAGCC+AGG 0.504233 1_2:-38547789 None:intergenic
ATGTCAAAGAGTATTTGAAT+TGG 0.504263 1_2:+38543845 Msa0069590:CDS
CTTCTCGAACTTCAACCCCT+AGG 0.505192 1_2:-38547714 None:intergenic
CTCAGCCCATCTGATTGCCC+TGG 0.505958 1_2:-38544868 None:intergenic
AAGAAAACATTGAGAAGTTG+AGG 0.507918 1_2:+38548741 Msa0069590:CDS
TTGTTCAACCTCATCACCTC+AGG 0.508260 1_2:-38543469 None:intergenic
GGAGTAGGATCCTGAGGCAT+TGG 0.508323 1_2:-38547755 None:intergenic
TTCTCGAACTTCAACCCCTA+GGG 0.508890 1_2:-38547713 None:intergenic
ATCAATGCTTCTGAAGTCTC+GGG 0.509386 1_2:-38545719 None:intergenic
AAAACTTTAGGGTTTCTGAT+CGG 0.510451 1_2:-38547009 None:intergenic
TCAATGAAGAACTTCTCAAC+CGG 0.510611 1_2:-38544054 None:intergenic
AAATTTGTAGAGCCAGGACC+TGG 0.510710 1_2:+38546979 Msa0069590:CDS
AAGAGCGAGATCTTGTTGTT+GGG 0.510971 1_2:+38546446 Msa0069590:CDS
CTAAAAGAACTTCAAAGTGA+TGG 0.511192 1_2:+38545677 Msa0069590:CDS
TGGTAGAGAGATTGCTTGAA+AGG 0.512014 1_2:+38547109 Msa0069590:CDS
TGGCATAGGGAGTGAGAGCT+TGG 0.512578 1_2:-38545823 None:intergenic
AAGTCGAACTGTCTCTGAAA+GGG 0.514784 1_2:-38548441 None:intergenic
GAAGTGGAAGATAAAATTGA+AGG 0.516822 1_2:+38548776 Msa0069590:CDS
AGGAAAGAATATTCATGCCC+TGG 0.518876 1_2:+38547038 Msa0069590:CDS
GCTTGTGAGGACTTTGCCTA+AGG 0.519621 1_2:+38543600 Msa0069590:CDS
AGGATCTTCTCCAATGCCTC+AGG 0.520022 1_2:+38547745 Msa0069590:CDS
GCATGAATATTCTTTCCTGT+TGG 0.520661 1_2:-38547033 None:intergenic
CCTGTAAGCCTTGAAGAGCT+TGG 0.521389 1_2:+38547291 Msa0069590:CDS
AGACAGTTGCCCTTGTACTG+TGG 0.524055 1_2:+38547163 Msa0069590:CDS
AATGGAGAGTGCCAAAATAG+TGG 0.525754 1_2:+38547089 Msa0069590:CDS
GTGATGAGGTTGAACAAATT+GGG 0.525757 1_2:+38543475 Msa0069590:CDS
GCACTTGATCGTGTGGAAGA+AGG 0.526412 1_2:+38546583 Msa0069590:CDS
ATGGAACAAGCTGAAGCCCT+AGG 0.527755 1_2:+38547697 Msa0069590:CDS
ATGCAATCTCGACAAGGATG+TGG 0.527790 1_2:+38546390 Msa0069590:CDS
TTTGCACCAGGGCAATCAGA+TGG 0.527982 1_2:+38544862 Msa0069590:CDS
CTTCCGAGGTTATCAGCTAT+CGG 0.530437 1_2:-38547252 None:intergenic
GAAGGTAAATTTGTAGAGCC+AGG 0.531858 1_2:+38546973 Msa0069590:CDS
GTGATAAAGCTCAAGATGCT+AGG 0.532035 1_2:+38543641 Msa0069590:CDS
TGGCAACAGCTATCAATTCA+AGG 0.532190 1_2:-38548885 None:intergenic
ATATGGAGAATCCCTTGCTC+AGG 0.535247 1_2:+38547206 Msa0069590:CDS
CTGTTGAGAAAGAAAGGGAC+AGG 0.535797 1_2:+38543416 Msa0069590:CDS
CTGAGCTAGTATAGAAGGGA+GGG 0.536608 1_2:-38546614 None:intergenic
TATTCCTACTACAGCAGCAA+TGG 0.537673 1_2:+38547071 Msa0069590:CDS
GAGTGAGAGCTTGGTATTCA+CGG 0.538327 1_2:-38545814 None:intergenic
CCGCCAGACAAAGGAAATGT+AGG 0.538739 1_2:+38545611 Msa0069590:CDS
TCACTCAAGGACACTGGCCG+CGG 0.538856 1_2:+38546328 Msa0069590:CDS
TTGAACCCCAAATGGTATGA+AGG 0.539742 1_2:+38548482 Msa0069590:CDS
CATATTGTTACTGGTGATGA+TGG 0.543100 1_2:+38543946 Msa0069590:CDS
GTTCTTCATTTCGGCACACA+CGG 0.543326 1_2:+38546070 Msa0069590:CDS
ATATTCCCGATCAGACTGTC+GGG 0.544764 1_2:-38546145 None:intergenic
TGTGAGTTCAATTATTAGCA+CGG 0.546575 1_2:+38546360 Msa0069590:CDS
CTGCTAGGCAGGATCATCCA+AGG 0.547292 1_2:+38544145 Msa0069590:CDS
CAAGTCGAACTGTCTCTGAA+AGG 0.548201 1_2:-38548442 None:intergenic
ATTGTAGCTGATAATGAAGT+GGG 0.548716 1_2:+38546931 Msa0069590:CDS
GATTCGGCATAAACGAGCCA+TGG 0.549574 1_2:+38546818 Msa0069590:CDS
GTTATCCCGACAGTCTGATC+GGG 0.550046 1_2:+38546140 Msa0069590:CDS
TGTTATCCCGACAGTCTGAT+CGG 0.550112 1_2:+38546139 Msa0069590:CDS
TTCAGTTTCCCGCCAGACAA+AGG 0.551110 1_2:+38545602 Msa0069590:CDS
AAAATTGGGGAAAGCCTCCT+GGG 0.551960 1_2:+38545858 Msa0069590:CDS
TCTGGATAGAGCAGTGAAGA+TGG 0.553343 1_2:+38547624 Msa0069590:CDS
CCTACATTTCCTTTGTCTGG+CGG 0.555098 1_2:-38545611 None:intergenic
CCATCCGCATTCAGATTCCC+AGG 0.556819 1_2:-38545875 None:intergenic
GAATTGGTATGGAACTAGAA+GGG 0.557064 1_2:+38543861 Msa0069590:CDS
TCCGACAAGTACTGAATCCA+TGG 0.557088 1_2:-38546835 None:intergenic
GAAGGTGTATGCTAAGATCA+TGG 0.558148 1_2:+38546468 Msa0069590:CDS
TCTTATGTTCCAGCATTGAA+AGG 0.558366 1_2:+38543742 Msa0069590:CDS
AGCATTGAAAGGTACAAAGA+TGG 0.560280 1_2:+38543753 Msa0069590:CDS
TCCCGACCAGCGAAAACTAT+CGG 0.560614 1_2:-38544324 None:intergenic
ACTGCTTCCATGGCTGTGGG+TGG 0.561275 1_2:-38546538 None:intergenic
CTACTCCTCAAACATAAACC+TGG 0.561850 1_2:+38547771 Msa0069590:CDS
AAGAGGCTTACTAACACAGT+TGG 0.562219 1_2:+38548545 Msa0069590:CDS
ACTCCTCCAGCCGAAAATGC+AGG 0.564072 1_2:+38546256 Msa0069590:CDS
GGATGTGGATTTGCCAGAGG+AGG 0.564165 1_2:+38546405 Msa0069590:CDS
CCTGGGAATCTGAATGCGGA+TGG 0.565028 1_2:+38545875 Msa0069590:CDS
CGATAGCTGATAACCTCGGA+AGG 0.565402 1_2:+38547253 Msa0069590:CDS
GCGAGATCTTGTTGTTGGGA+AGG 0.566549 1_2:+38546450 Msa0069590:CDS
AGGAATAGATTGTGGATCCA+GGG 0.566579 1_2:-38547055 None:intergenic
CACTCTGAGCTAGTATAGAA+GGG 0.566931 1_2:-38546618 None:intergenic
ATTAGTAGTGCGCTCTACAA+AGG 0.567137 1_2:-38546746 None:intergenic
TGGCTATGGTAGCCTCTGAA+GGG 0.567287 1_2:-38546198 None:intergenic
TACCACCACTGCCAATGCCC+AGG 0.567361 1_2:+38548071 Msa0069590:CDS
ACATGCCTTCATACCATTTG+GGG 0.567611 1_2:-38548487 None:intergenic
ACTTGAGGCTAAAGGTGCTA+AGG 0.567955 1_2:+38543993 Msa0069590:CDS
GACAGTTGCCCTTGTACTGT+GGG 0.568375 1_2:+38547164 Msa0069590:CDS
TTCTTGGAAGCCAATGGACG+CGG 0.569693 1_2:+38548701 Msa0069590:CDS
CTTTCCAGGCATGAATTCAA+GGG 0.570369 1_2:-38546095 None:intergenic
GAGTCCCGCCTGTTGCCTTG+TGG 0.570560 1_2:+38546496 Msa0069590:CDS
GGATTTGCCAGAGGAGGGTG+TGG 0.570930 1_2:+38546411 Msa0069590:CDS
TGGTGAGCCACCCACAGCCA+TGG 0.572051 1_2:+38546531 Msa0069590:CDS
TCATGCCTGGAAAGCAGGTA+GGG 0.572227 1_2:+38546104 Msa0069590:CDS
GCAACTGCTTCCATGGCTGT+GGG 0.573262 1_2:-38546541 None:intergenic
GCCAGAGCTAGATGGAGGAA+TGG 0.573307 1_2:+38544299 Msa0069590:CDS
AGTTTAAAACAAGCCTTGGA+AGG 0.573560 1_2:+38546955 Msa0069590:CDS
AGCTGCTGTTGAGAAAGAAA+GGG 0.574923 1_2:+38543411 Msa0069590:CDS
TGAAGAGCTTGGAAGACCTA+GGG 0.575077 1_2:+38547302 Msa0069590:CDS
AATTCTGTGATATCTCTCAC+TGG 0.577320 1_2:+38544102 Msa0069590:CDS
TTGCACCAGGGCAATCAGAT+GGG 0.578411 1_2:+38544863 Msa0069590:CDS
AATTGTAGCTGATAATGAAG+TGG 0.581181 1_2:+38546930 Msa0069590:CDS
TTGAAGAGCTTGGAAGACCT+AGG 0.581627 1_2:+38547301 Msa0069590:CDS
TCACCTTCGTAGCCAAATGT+AGG 0.581846 1_2:-38545953 None:intergenic
TCTATACTAGCTCAGAGTGT+AGG 0.582656 1_2:+38546622 Msa0069590:CDS
GCCATGGATTCAGTACTTGT+CGG 0.583198 1_2:+38546834 Msa0069590:CDS
CTCAAACATAAACCTGGCTG+TGG 0.583568 1_2:+38547777 Msa0069590:CDS
GGGAGATTTCCGATGAGTCA+AGG 0.586930 1_2:-38547954 None:intergenic
ATTGGAGAAGATCCTTGTTG+CGG 0.587479 1_2:-38547737 None:intergenic
AAGCAAAAGACTTTCTGCTA+AGG 0.588891 1_2:-38547843 None:intergenic
TGGAACAAGCTGAAGCCCTA+GGG 0.589177 1_2:+38547698 Msa0069590:CDS
ACAAGATCTCGCTCTTTAGT+GGG 0.590525 1_2:-38546439 None:intergenic
TGAGAAAGAAAGGGACAGGA+TGG 0.590862 1_2:+38543420 Msa0069590:CDS
TGACTACATGTTTGCCACGT+GGG 0.591455 1_2:+38542603 Msa0069590:five_prime_UTR
CAGCTGCTGAGACTGATGAT+TGG 0.591859 1_2:-38543219 None:intergenic
GAGGCAGTTGTACTCAGAAG+TGG 0.592377 1_2:+38548760 Msa0069590:CDS
TTAACGACAACGTCAACCCT+AGG 0.593453 1_2:-38547318 None:intergenic
CTATGTAAGGAAGCATGCAA+TGG 0.593996 1_2:+38547678 Msa0069590:CDS
GCTCGTTTATGCCGAATCCA+AGG 0.594381 1_2:-38546813 None:intergenic
GGAGTCCACAAGGCAACAGG+CGG 0.595305 1_2:-38546501 None:intergenic
AAATCTGCAAGCCCTCATCA+TGG 0.595409 1_2:+38545998 Msa0069590:CDS
CAACCTACATTTGGCTACGA+AGG 0.595624 1_2:+38545950 Msa0069590:CDS
CAAACATTCTTGGAAGCCAA+TGG 0.597139 1_2:+38548695 Msa0069590:CDS
TGCTGTGATTATGGAACTTG+AGG 0.601587 1_2:+38543978 Msa0069590:CDS
TGTTTGCACCAGCTTCCTGA+AGG 0.602417 1_2:-38548678 None:intergenic
CAAGGCTTACAGGTTCTACA+CGG 0.603134 1_2:-38547281 None:intergenic
GTATCAGCAATATATGCACT+TGG 0.603205 1_2:-38548051 None:intergenic
TCACGCTCTTCACAAGAGAG+TGG 0.605513 1_2:+38544833 Msa0069590:CDS
ATGTTATCTAGTGGTTATGA+GGG 0.606082 1_2:+38548506 Msa0069590:CDS
CACAACATTCATTCAAGACG+AGG 0.607395 1_2:+38548619 Msa0069590:CDS
GGCTTACTAACACAGTTGGA+TGG 0.608400 1_2:+38548549 Msa0069590:CDS
ATTTATAGAAGCAGTGACAA+AGG 0.608838 1_2:+38546661 Msa0069590:CDS
CATCAATGCCTGAGGTGATG+AGG 0.609334 1_2:+38543461 Msa0069590:CDS
AACTCACAATTTGTTGACCG+CGG 0.612209 1_2:-38546345 None:intergenic
GATGTGGATTTGCCAGAGGA+GGG 0.612511 1_2:+38546406 Msa0069590:CDS
AAACAAATTTGAAAGAACAA+AGG 0.612699 1_2:+38542803 Msa0069590:five_prime_UTR
AATATTCCCGATCAGACTGT+CGG 0.612746 1_2:-38546146 None:intergenic
AACGTACGAAACATTCTGCA+AGG 0.613833 1_2:+38543321 Msa0069590:CDS
AGCTAGTATAGAAGGGAGGG+AGG 0.614373 1_2:-38546611 None:intergenic
TTTCTTCTTGTTCTTCTACG+TGG 0.614402 1_2:-38542721 None:intergenic
TCATCCACAGAACCTGAGCA+AGG 0.614478 1_2:-38547218 None:intergenic
GAGTGTAGGAAGAAACATAG+AGG 0.615313 1_2:+38546636 Msa0069590:CDS
TTCATGCCTGGAAAGCAGGT+AGG 0.615731 1_2:+38546103 Msa0069590:CDS
GTTTGAGGAGTAGGATCCTG+AGG 0.617687 1_2:-38547761 None:intergenic
CTACACGGTTGACCCTTCCG+AGG 0.618332 1_2:-38547266 None:intergenic
GTTTATGCCGAATCCAAGGA+TGG 0.618597 1_2:-38546809 None:intergenic
GGTGTTTCCATCAATGCCTG+AGG 0.619009 1_2:+38543453 Msa0069590:CDS
ATCTGTTCCCCACAGTACAA+GGG 0.619067 1_2:-38547172 None:intergenic
GAGTCCACAAGGCAACAGGC+GGG 0.619334 1_2:-38546500 None:intergenic
AGTTGTCGGTTACTTAGTCG+AGG 0.622689 1_2:+38543282 Msa0069590:CDS
TGCTAGGCAGGATCATCCAA+GGG 0.624728 1_2:+38544146 Msa0069590:CDS
TGGTGAAAGTTTGGCCCACG+TGG 0.626188 1_2:-38542617 None:intergenic
TTGGAGAAAAGTAACCGCAT+AGG 0.627390 1_2:-38545977 None:intergenic
CCAATGACATGGAGTCCACA+AGG 0.627709 1_2:-38546511 None:intergenic
GAGCGCACTACTAATAGTAA+GGG 0.627775 1_2:+38546754 Msa0069590:CDS
ATGCTGCAAAACCATGATGA+GGG 0.628612 1_2:-38546009 None:intergenic
GAATTGATAGCTGTTGCCAA+TGG 0.630507 1_2:+38548889 Msa0069590:three_prime_UTR
TATGCTGCAAAACCATGATG+AGG 0.631679 1_2:-38546010 None:intergenic
ATAGCATGTTGAAGCTTGTG+AGG 0.631952 1_2:+38543587 Msa0069590:CDS
TCTGAGCTAGTATAGAAGGG+AGG 0.635865 1_2:-38546615 None:intergenic
AAGTTCGAGAAGCCGCAACA+AGG 0.636456 1_2:+38547725 Msa0069590:CDS
GCCTCCTGGGAATCTGAATG+CGG 0.636519 1_2:+38545871 Msa0069590:CDS
GTAATGACTGACATCAGTGA+GGG 0.638222 1_2:-38547974 None:intergenic
TGCTGCAAACAACCCTTCAG+AGG 0.638847 1_2:+38546186 Msa0069590:CDS
CATCCACAGAACCTGAGCAA+GGG 0.638930 1_2:-38547217 None:intergenic
AGTGGAGCAGCTTTGCACCA+GGG 0.638947 1_2:+38544851 Msa0069590:CDS
GTGTTCGGGAAATCGAGAAG+AGG 0.640018 1_2:+38548528 Msa0069590:CDS
TAAACAATGCAATCTCGACA+AGG 0.641680 1_2:+38546384 Msa0069590:CDS
CATAGCTGCACTTGATCGTG+TGG 0.643552 1_2:+38546576 Msa0069590:CDS
TTGACATCATCATACATACA+AGG 0.653715 1_2:-38543829 None:intergenic
TCAGTTGTCTGGAAAACCAG+TGG 0.654285 1_2:-38544216 None:intergenic
TATGAAGGCATGTTATCTAG+TGG 0.654989 1_2:+38548497 Msa0069590:CDS
TATCAGTCACTCAAGGACAC+TGG 0.659943 1_2:+38546322 Msa0069590:CDS
AGGCTACCATAGCCAAACGC+AGG 0.661038 1_2:+38546206 Msa0069590:CDS
TGGGTGGCTCACCAATGACA+TGG 0.661910 1_2:-38546522 None:intergenic
ATGACTACATGTTTGCCACG+TGG 0.665295 1_2:+38542602 Msa0069590:five_prime_UTR
CAAGGATGTGGATTTGCCAG+AGG 0.666663 1_2:+38546402 Msa0069590:CDS
CTCGTCGTATCAGTCACTCA+AGG 0.667889 1_2:+38546315 Msa0069590:CDS
TTTGTAGAGCCAGGACCTGG+AGG 0.671079 1_2:+38546982 Msa0069590:CDS
AATCCGATAGCTGATAACCT+CGG 0.674393 1_2:+38547249 Msa0069590:CDS
CAAATAACCGAAGCATCACG+CGG 0.677542 1_2:+38546712 Msa0069590:CDS
GCTACGAAGGTGATCCTATG+CGG 0.681192 1_2:+38545963 Msa0069590:CDS
TGCGGATGGAGAGAATCTGT+TGG 0.692344 1_2:+38545889 Msa0069590:CDS
GATAGCTGATAACCTCGGAA+GGG 0.693097 1_2:+38547254 Msa0069590:CDS
GCATTGCCAGAGCTAGATGG+AGG 0.693777 1_2:+38544294 Msa0069590:CDS
GGAACAAGCTGAAGCCCTAG+GGG 0.694392 1_2:+38547699 Msa0069590:CDS
ATTATGGAACTTGAGGCTAA+AGG 0.694800 1_2:+38543985 Msa0069590:CDS
ACAGCATTAGAAGAAAATTG+GGG 0.696979 1_2:+38545845 Msa0069590:CDS
GAAAATGCAGGACTGTACAA+GGG 0.702354 1_2:+38546268 Msa0069590:CDS
AGTAATGACTGACATCAGTG+AGG 0.702723 1_2:-38547975 None:intergenic
TATGCCGAATCCAAGGATGG+AGG 0.719005 1_2:-38546806 None:intergenic
TCCGCATTCAGATTCCCAGG+AGG 0.735025 1_2:-38545872 None:intergenic
GCTGTAGTAGGAATAGATTG+TGG 0.740284 1_2:-38547063 None:intergenic
GAAAACGTTTAGGTACGCAG+CGG 0.758267 1_2:-38545636 None:intergenic
CAACAGCTATCAATTCAAGG+TGG 0.759637 1_2:-38548882 None:intergenic
ACAGTTGCCCTTGTACTGTG+GGG 0.790700 1_2:+38547165 Msa0069590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATCTTTATATATAAAAT+TGG - chr1_2:38549041-38549060 None:intergenic 10.0%
!!! CAATTTTATATATAAAGATA+TGG + chr1_2:38549039-38549058 Msa0069590:three_prime_UTR 10.0%
!!! TTTTTTTCAGTCTAAAATTT+GGG + chr1_2:38542914-38542933 Msa0069590:five_prime_UTR 15.0%
!! AAATTCACTAATGTTTATTA+AGG + chr1_2:38544804-38544823 Msa0069590:intron 15.0%
!!! AATTTTTGTTTTTGTTATAG+AGG - chr1_2:38547462-38547481 None:intergenic 15.0%
!!! GTTTTCTTAGAAAAAAAATT+GGG + chr1_2:38548131-38548150 Msa0069590:intron 15.0%
!! TATAAAATTGGAAGATATAT+TGG - chr1_2:38549029-38549048 None:intergenic 15.0%
!! AAACAAATTTGAAAGAACAA+AGG + chr1_2:38542803-38542822 Msa0069590:five_prime_UTR 20.0%
!!! CTTTTTTTCAGTCTAAAATT+TGG + chr1_2:38542913-38542932 Msa0069590:five_prime_UTR 20.0%
!!! TGTTTTTAGATAATGGAATT+TGG + chr1_2:38543794-38543813 Msa0069590:CDS 20.0%
!! AAAAGCAACTTATAACTTAT+AGG + chr1_2:38544601-38544620 Msa0069590:intron 20.0%
!!! TCAGCTTTTAATAAAAGAAT+AGG - chr1_2:38545021-38545040 None:intergenic 20.0%
!!! TTTGTTGACATTTTATATTG+TGG + chr1_2:38545311-38545330 Msa0069590:intron 20.0%
!!! TTGTTGACATTTTATATTGT+GGG + chr1_2:38545312-38545331 Msa0069590:intron 20.0%
!!! ACAAGATGATTTTTAGATAT+TGG - chr1_2:38545407-38545426 None:intergenic 20.0%
!! ACAGATAATATTAAGACATA+TGG + chr1_2:38547189-38547208 Msa0069590:CDS 20.0%
!! GATTCTGTTATTGTTTAAAA+AGG + chr1_2:38547403-38547422 Msa0069590:intron 20.0%
!! TTCAAAATTTAAGGAAAGAT+GGG + chr1_2:38548022-38548041 Msa0069590:CDS 20.0%
!!! CGTTTTCTTAGAAAAAAAAT+TGG + chr1_2:38548130-38548149 Msa0069590:intron 20.0%
! ATAGTTTCTTCCAATGAAAA+CGG - chr1_2:38542656-38542675 None:intergenic 25.0%
!! TTACAATAAAGAGCAAGTTT+TGG - chr1_2:38542873-38542892 None:intergenic 25.0%
! TTAGAATTTGGTAGAGTAAA+TGG - chr1_2:38542971-38542990 None:intergenic 25.0%
!!! AGTTGATCAACTTTAGAATT+TGG - chr1_2:38542983-38543002 None:intergenic 25.0%
!!! TTTTGAGTTACCATAGTAAT+TGG - chr1_2:38543059-38543078 None:intergenic 25.0%
! TTCTTGAAAAGCTGAAAAAA+AGG - chr1_2:38543538-38543557 None:intergenic 25.0%
! AAGAAATTCTGCAAATTATC+AGG - chr1_2:38543706-38543725 None:intergenic 25.0%
! AATTTCTTGAAGATGATTTC+TGG + chr1_2:38543718-38543737 Msa0069590:CDS 25.0%
! CCATTATCTAAAAACAAAAC+AGG - chr1_2:38543790-38543809 None:intergenic 25.0%
!!! CCTGTTTTGTTTTTAGATAA+TGG + chr1_2:38543787-38543806 Msa0069590:CDS 25.0%
!!! ATGTCAAAGAGTATTTGAAT+TGG + chr1_2:38543845-38543864 Msa0069590:CDS 25.0%
!!! AAAGAGTATTTGAATTGGTA+TGG + chr1_2:38543850-38543869 Msa0069590:CDS 25.0%
! ACAAATGGTTTCTTAGTAAT+AGG - chr1_2:38544081-38544100 None:intergenic 25.0%
! TTAATAGGGTATAAGGTAAA+AGG - chr1_2:38544417-38544436 None:intergenic 25.0%
!! TTTTACCTTATACCCTATTA+AGG + chr1_2:38544416-38544435 Msa0069590:intron 25.0%
!! TTAAGTTGTTTATGTGAACA+AGG + chr1_2:38544720-38544739 Msa0069590:intron 25.0%
! TAAGTTGTTTATGTGAACAA+GGG + chr1_2:38544721-38544740 Msa0069590:intron 25.0%
!! TGAGTTGAAAAGAAAAACAA+AGG + chr1_2:38544887-38544906 Msa0069590:CDS 25.0%
!!! ATATTTTGCTGTTCTTAATC+TGG - chr1_2:38545291-38545310 None:intergenic 25.0%
! CATCTTTCATGTAAATTCAT+AGG + chr1_2:38545372-38545391 Msa0069590:intron 25.0%
! TGTTGAAATTATCTTGATAC+AGG + chr1_2:38545553-38545572 Msa0069590:intron 25.0%
!!! TTCTTTTAGAACAGAGAAAA+TGG - chr1_2:38545666-38545685 None:intergenic 25.0%
!! CAATATGGTAATGTATTCAT+AGG + chr1_2:38545923-38545942 Msa0069590:CDS 25.0%
!!! AGAATTTTGTTTGAGTACTT+GGG + chr1_2:38546892-38546911 Msa0069590:CDS 25.0%
! GAAAGGCAAAAAATTGATAA+TGG + chr1_2:38547126-38547145 Msa0069590:CDS 25.0%
!! TTTGTTATAGAGGTTAACTA+TGG - chr1_2:38547452-38547471 None:intergenic 25.0%
! AGAAACTATAATGATTGTTC+AGG + chr1_2:38547497-38547516 Msa0069590:intron 25.0%
! GAAACTATAATGATTGTTCA+GGG + chr1_2:38547498-38547517 Msa0069590:intron 25.0%
! ATGAAAATCTTGGAGTAATA+AGG - chr1_2:38547551-38547570 None:intergenic 25.0%
!! AAATTTTGAACAAGGTTAGT+GGG - chr1_2:38548012-38548031 None:intergenic 25.0%
!! TAAATTTTGAACAAGGTTAG+TGG - chr1_2:38548013-38548032 None:intergenic 25.0%
! CTAACCTTGTTCAAAATTTA+AGG + chr1_2:38548013-38548032 Msa0069590:CDS 25.0%
!! CTTTCCTTAAATTTTGAACA+AGG - chr1_2:38548020-38548039 None:intergenic 25.0%
! GTTCAAAATTTAAGGAAAGA+TGG + chr1_2:38548021-38548040 Msa0069590:CDS 25.0%
! GAAAGATCAAAATCCTAATA+AGG - chr1_2:38548313-38548332 None:intergenic 25.0%
! AAAATTACAACAGGGAAAAA+GGG - chr1_2:38548947-38548966 None:intergenic 25.0%
! AAAAATTACAACAGGGAAAA+AGG - chr1_2:38548948-38548967 None:intergenic 25.0%
! AGTCAACAAAAATTACAACA+GGG - chr1_2:38548955-38548974 None:intergenic 25.0%
! AAGTCAACAAAAATTACAAC+AGG - chr1_2:38548956-38548975 None:intergenic 25.0%
!!! TGTAATTTTTGTTGACTTTC+AGG + chr1_2:38548958-38548977 Msa0069590:three_prime_UTR 25.0%
!!! GTAATTTTTGTTGACTTTCA+GGG + chr1_2:38548959-38548978 Msa0069590:three_prime_UTR 25.0%
!!! TTTTATTTGGTTTGTGTGGA+GGG - chr1_2:38542693-38542712 None:intergenic 30.0%
!!! TTTTTATTTGGTTTGTGTGG+AGG - chr1_2:38542694-38542713 None:intergenic 30.0%
!!! GAGTTTTTATTTGGTTTGTG+TGG - chr1_2:38542697-38542716 None:intergenic 30.0%
!!! AGAGCAAGTTTTGGTTATAA+GGG - chr1_2:38542864-38542883 None:intergenic 30.0%
!!! AAGAGCAAGTTTTGGTTATA+AGG - chr1_2:38542865-38542884 None:intergenic 30.0%
!! AAATTTGGGTTGATGATCAA+TGG + chr1_2:38542928-38542947 Msa0069590:exon 30.0%
!!! AGTAATTGGTTTTCTTAGGA+AGG - chr1_2:38543045-38543064 None:intergenic 30.0%
!!! CCATAGTAATTGGTTTTCTT+AGG - chr1_2:38543049-38543068 None:intergenic 30.0%
CCTAAGAAAACCAATTACTA+TGG + chr1_2:38543046-38543065 Msa0069590:CDS 30.0%
TGCATTGCATTTCAATCTAA+AGG - chr1_2:38543086-38543105 None:intergenic 30.0%
AGATTGAAATGCAATGCAAT+TGG + chr1_2:38543088-38543107 Msa0069590:CDS 30.0%
AAATGCAATGCAATTGGTAA+TGG + chr1_2:38543094-38543113 Msa0069590:CDS 30.0%
! ACATACACAATTTTCACTGT+TGG - chr1_2:38543181-38543200 None:intergenic 30.0%
GAAGATGCTAATATCTTCAT+TGG + chr1_2:38543349-38543368 Msa0069590:CDS 30.0%
!!! TGGTTCATTGATTTTTGTTG+AGG + chr1_2:38543369-38543388 Msa0069590:CDS 30.0%
! TCTTTTAGTATGTCACAACT+TGG + chr1_2:38543499-38543518 Msa0069590:CDS 30.0%
GGTAAATACTTCAAAACCTT+AGG - chr1_2:38543619-38543638 None:intergenic 30.0%
! ATATCTTGAGTCTACAGTTT+TGG + chr1_2:38543668-38543687 Msa0069590:CDS 30.0%
TTGACATCATCATACATACA+AGG - chr1_2:38543832-38543851 None:intergenic 30.0%
GATATCACAGAATTCACAAA+TGG - chr1_2:38544096-38544115 None:intergenic 30.0%
!! GTGATTGTTTTACCTGTTTT+GGG - chr1_2:38544351-38544370 None:intergenic 30.0%
!! AGTGATTGTTTTACCTGTTT+TGG - chr1_2:38544352-38544371 None:intergenic 30.0%
ACAATCCTTAATAGGGTATA+AGG - chr1_2:38544424-38544443 None:intergenic 30.0%
!!! GTTGCTTTTGTAAGTTATTC+AGG - chr1_2:38544590-38544609 None:intergenic 30.0%
TGAAGTCATATTATCTCTCA+AGG + chr1_2:38544931-38544950 Msa0069590:intron 30.0%
ATATTATCTCTCAAGGTTGT+AGG + chr1_2:38544938-38544957 Msa0069590:intron 30.0%
TATTATCTCTCAAGGTTGTA+GGG + chr1_2:38544939-38544958 Msa0069590:intron 30.0%
TTGAAGCAGATATCTGATAT+TGG + chr1_2:38544979-38544998 Msa0069590:intron 30.0%
TGATACTACAAGTAATCTCT+AGG + chr1_2:38545083-38545102 Msa0069590:intron 30.0%
TTCCAATGTAGTAAAACCTT+AGG + chr1_2:38545469-38545488 Msa0069590:intron 30.0%
TCCAATGTAGTAAAACCTTA+GGG + chr1_2:38545470-38545489 Msa0069590:intron 30.0%
!!! TTTTAGAACAGAGAAAATGG+AGG - chr1_2:38545663-38545682 None:intergenic 30.0%
CTAAAAGAACTTCAAAGTGA+TGG + chr1_2:38545677-38545696 Msa0069590:CDS 30.0%
TGTAAGCAATGTTGAGATTT+GGG - chr1_2:38545784-38545803 None:intergenic 30.0%
TTGTAAGCAATGTTGAGATT+TGG - chr1_2:38545785-38545804 None:intergenic 30.0%
CACAGCATTAGAAGAAAATT+GGG + chr1_2:38545844-38545863 Msa0069590:CDS 30.0%
ACAGCATTAGAAGAAAATTG+GGG + chr1_2:38545845-38545864 Msa0069590:CDS 30.0%
TTGGTATATGGTAAGCAATA+TGG + chr1_2:38545908-38545927 Msa0069590:CDS 30.0%
TGTGAGTTCAATTATTAGCA+CGG + chr1_2:38546360-38546379 Msa0069590:CDS 30.0%
ATTTATAGAAGCAGTGACAA+AGG + chr1_2:38546661-38546680 Msa0069590:CDS 30.0%
!! CAGAATTTTGTTTGAGTACT+TGG + chr1_2:38546891-38546910 Msa0069590:CDS 30.0%
! AATTGTAGCTGATAATGAAG+TGG + chr1_2:38546930-38546949 Msa0069590:CDS 30.0%
! ATTGTAGCTGATAATGAAGT+GGG + chr1_2:38546931-38546950 Msa0069590:CDS 30.0%
!! AAAACTTTAGGGTTTCTGAT+CGG - chr1_2:38547012-38547031 None:intergenic 30.0%
! TTCCTGTTGGTAAAACTTTA+GGG - chr1_2:38547023-38547042 None:intergenic 30.0%
! TTTCCTGTTGGTAAAACTTT+AGG - chr1_2:38547024-38547043 None:intergenic 30.0%
!! AGGCAAAAAATTGATAATGG+AGG + chr1_2:38547129-38547148 Msa0069590:CDS 30.0%
CAATAACAGAATCCAAACAA+CGG - chr1_2:38547396-38547415 None:intergenic 30.0%
ACAGACAGATATGAAAATCT+TGG - chr1_2:38547561-38547580 None:intergenic 30.0%
! AAAAAGACAAGTCTTTGAGA+TGG + chr1_2:38547900-38547919 Msa0069590:CDS 30.0%
! AATTTTGAACAAGGTTAGTG+GGG - chr1_2:38548011-38548030 None:intergenic 30.0%
! TCGTATAACAACTTTTACCT+GGG - chr1_2:38548091-38548110 None:intergenic 30.0%
! TTCGTATAACAACTTTTACC+TGG - chr1_2:38548092-38548111 None:intergenic 30.0%
ATTGATTAAAGTGACACTGA+TGG + chr1_2:38548169-38548188 Msa0069590:intron 30.0%
TTGACATTGCAAAACCTAAA+GGG - chr1_2:38548233-38548252 None:intergenic 30.0%
TTTGACATTGCAAAACCTAA+AGG - chr1_2:38548234-38548253 None:intergenic 30.0%
!!! AGTTTTTTCGTTTGACCTTA+TGG + chr1_2:38548393-38548412 Msa0069590:intron 30.0%
AAAGGAACAATATCTCCATA+AGG - chr1_2:38548411-38548430 None:intergenic 30.0%
ATGTTATCTAGTGGTTATGA+GGG + chr1_2:38548506-38548525 Msa0069590:CDS 30.0%
AAGAAAACATTGAGAAGTTG+AGG + chr1_2:38548741-38548760 Msa0069590:CDS 30.0%
GAAGTGGAAGATAAAATTGA+AGG + chr1_2:38548776-38548795 Msa0069590:CDS 30.0%
!! TACCTTATTTCTCTGAAACT+TGG + chr1_2:38548856-38548875 Msa0069590:three_prime_UTR 30.0%
AACCAAGTTTCAGAGAAATA+AGG - chr1_2:38548861-38548880 None:intergenic 30.0%
TACATTAACAATGATGCCAT+TGG - chr1_2:38548908-38548927 None:intergenic 30.0%
AAATTACAACAGGGAAAAAG+GGG - chr1_2:38548946-38548965 None:intergenic 30.0%
! ATATATTGGCCAAGTTTGTT+TGG - chr1_2:38549015-38549034 None:intergenic 30.0%
TATGGTTAGTGGTGAAAGTT+TGG - chr1_2:38542629-38542648 None:intergenic 35.0%
AAAACGGTTTCTATGGTTAG+TGG - chr1_2:38542640-38542659 None:intergenic 35.0%
! ACCATAGAAACCGTTTTCAT+TGG + chr1_2:38542643-38542662 Msa0069590:five_prime_UTR 35.0%
TCCAATGAAAACGGTTTCTA+TGG - chr1_2:38542647-38542666 None:intergenic 35.0%
! CGTGGAGTTGAGTTTTTATT+TGG - chr1_2:38542706-38542725 None:intergenic 35.0%
TTTCTTCTTGTTCTTCTACG+TGG - chr1_2:38542724-38542743 None:intergenic 35.0%
TGAGAAACACAACTCAACTT+TGG + chr1_2:38542778-38542797 Msa0069590:five_prime_UTR 35.0%
TGGTTATAAGGGAAAGCTAA+TGG - chr1_2:38542853-38542872 None:intergenic 35.0%
!! GGTAAGTTTTGCTTGTTTTC+TGG - chr1_2:38543160-38543179 None:intergenic 35.0%
!!! GATGCTTCTTTTGAAGTTGT+CGG + chr1_2:38543268-38543287 Msa0069590:CDS 35.0%
GTGATGAGGTTGAACAAATT+GGG + chr1_2:38543475-38543494 Msa0069590:CDS 35.0%
AAGAAGAATACTTCTTCAGC+TGG + chr1_2:38543556-38543575 Msa0069590:CDS 35.0%
! TCTTATGTTCCAGCATTGAA+AGG + chr1_2:38543742-38543761 Msa0069590:CDS 35.0%
ATCTTTGTACCTTTCAATGC+TGG - chr1_2:38543754-38543773 None:intergenic 35.0%
! AGCATTGAAAGGTACAAAGA+TGG + chr1_2:38543753-38543772 Msa0069590:CDS 35.0%
! CATACATACAAGGTGCTAAA+GGG - chr1_2:38543822-38543841 None:intergenic 35.0%
! TCATACATACAAGGTGCTAA+AGG - chr1_2:38543823-38543842 None:intergenic 35.0%
TGAATTGGTATGGAACTAGA+AGG + chr1_2:38543860-38543879 Msa0069590:CDS 35.0%
GAATTGGTATGGAACTAGAA+GGG + chr1_2:38543861-38543880 Msa0069590:CDS 35.0%
!!! TTGTTGGTTTGGTTTTGCAA+AGG + chr1_2:38543920-38543939 Msa0069590:CDS 35.0%
CAAAGGAGTCATATTGTTAC+TGG + chr1_2:38543937-38543956 Msa0069590:CDS 35.0%
! CATATTGTTACTGGTGATGA+TGG + chr1_2:38543946-38543965 Msa0069590:CDS 35.0%
TCATTACGTTGCTGTGATTA+TGG + chr1_2:38543969-38543988 Msa0069590:CDS 35.0%
ATTATGGAACTTGAGGCTAA+AGG + chr1_2:38543985-38544004 Msa0069590:CDS 35.0%
! AAGGTTATTCCAATTTTCGC+CGG + chr1_2:38544012-38544031 Msa0069590:CDS 35.0%
TCAATGAAGAACTTCTCAAC+CGG - chr1_2:38544057-38544076 None:intergenic 35.0%
AATTCTGTGATATCTCTCAC+TGG + chr1_2:38544102-38544121 Msa0069590:CDS 35.0%
AGTGGCAAAGCAACAATATA+AGG - chr1_2:38544201-38544220 None:intergenic 35.0%
!! TTATATTGTTGCTTTGCCAC+TGG + chr1_2:38544200-38544219 Msa0069590:CDS 35.0%
AGAGTGGTTGAATAGTACTT+TGG + chr1_2:38544239-38544258 Msa0069590:CDS 35.0%
GAGTGGTTGAATAGTACTTT+GGG + chr1_2:38544240-38544259 Msa0069590:CDS 35.0%
ACTTGAAGAGCAACTTGAAT+TGG - chr1_2:38544273-38544292 None:intergenic 35.0%
TGCAAGGACAATCCTTAATA+GGG - chr1_2:38544431-38544450 None:intergenic 35.0%
TTGCAAGGACAATCCTTAAT+AGG - chr1_2:38544432-38544451 None:intergenic 35.0%
TTGTCCTTGCAAATACTCTT+AGG + chr1_2:38544440-38544459 Msa0069590:intron 35.0%
TGTCCTTGCAAATACTCTTA+GGG + chr1_2:38544441-38544460 Msa0069590:intron 35.0%
!!! TAACACTTCTGAGACTGTTT+TGG + chr1_2:38544500-38544519 Msa0069590:intron 35.0%
TGACTTCAAGAAGCGAAATA+TGG - chr1_2:38544919-38544938 None:intergenic 35.0%
TACTACAAGTAATCTCTAGG+TGG + chr1_2:38545086-38545105 Msa0069590:intron 35.0%
!! GATATTGACTTTGAGCTGAA+TGG + chr1_2:38545190-38545209 Msa0069590:intron 35.0%
TAATCTGGACAAAAGAAACG+AGG - chr1_2:38545276-38545295 None:intergenic 35.0%
ATTGGAAAAACATGTAGTGC+AGG - chr1_2:38545456-38545475 None:intergenic 35.0%
! ACCCTAAGGTTTTACTACAT+TGG - chr1_2:38545474-38545493 None:intergenic 35.0%
AAATGGAGGAGAAAACGTTT+AGG - chr1_2:38545649-38545668 None:intergenic 35.0%
AGTGATGGTTACAATGTTGA+AGG + chr1_2:38545692-38545711 Msa0069590:CDS 35.0%
!! AATCAATGCTTCTGAAGTCT+CGG - chr1_2:38545723-38545742 None:intergenic 35.0%
! CCAATTTTCTTCTAATGCTG+TGG - chr1_2:38545846-38545865 None:intergenic 35.0%
CCACAGCATTAGAAGAAAAT+TGG + chr1_2:38545843-38545862 Msa0069590:CDS 35.0%
ATAGGTGTTCAACCTACATT+TGG + chr1_2:38545941-38545960 Msa0069590:CDS 35.0%
GCAGCATAGTAATAGACATT+TGG - chr1_2:38546172-38546191 None:intergenic 35.0%
TAAACAATGCAATCTCGACA+AGG + chr1_2:38546384-38546403 Msa0069590:CDS 35.0%
!! CAGTGACAAAGGAGTATTAA+AGG + chr1_2:38546672-38546691 Msa0069590:CDS 35.0%
TAAAGGATGTAGAGCTTCTT+CGG + chr1_2:38546689-38546708 Msa0069590:CDS 35.0%
AATAAACTTACCTCCATCCT+TGG + chr1_2:38546796-38546815 Msa0069590:CDS 35.0%
! CAAATTTTACCGAGGTGATA+GGG + chr1_2:38546861-38546880 Msa0069590:CDS 35.0%
! AGTTTAAAACAAGCCTTGGA+AGG + chr1_2:38546955-38546974 Msa0069590:CDS 35.0%
CTCTACAAATTTACCTTCCA+AGG - chr1_2:38546971-38546990 None:intergenic 35.0%
!! AAACTTTAGGGTTTCTGATC+GGG - chr1_2:38547011-38547030 None:intergenic 35.0%
! AACCCTAAAGTTTTACCAAC+AGG + chr1_2:38547018-38547037 Msa0069590:CDS 35.0%
GCATGAATATTCTTTCCTGT+TGG - chr1_2:38547036-38547055 None:intergenic 35.0%
! CAATCTCTCTACCACTATTT+TGG - chr1_2:38547103-38547122 None:intergenic 35.0%
CTGATACCTGATTGATGAAA+AGG - chr1_2:38547365-38547384 None:intergenic 35.0%
TCTTCTTCAGATGAATCTTC+TGG + chr1_2:38547606-38547625 Msa0069590:intron 35.0%
AAGCAAAAGACTTTCTGCTA+AGG - chr1_2:38547846-38547865 None:intergenic 35.0%
TTTCCAAAACCTTGACTCAT+CGG + chr1_2:38547945-38547964 Msa0069590:CDS 35.0%
GTATCAGCAATATATGCACT+TGG - chr1_2:38548054-38548073 None:intergenic 35.0%
GATTTGAATTTCACCCCTTT+AGG + chr1_2:38548216-38548235 Msa0069590:intron 35.0%
TGACATTGCAAAACCTAAAG+GGG - chr1_2:38548232-38548251 None:intergenic 35.0%
ACACAAGTGACATCCTTATT+AGG + chr1_2:38548297-38548316 Msa0069590:intron 35.0%
ATGGAGATATTGTTCCTTTC+AGG + chr1_2:38548412-38548431 Msa0069590:intron 35.0%
AACATGCCTTCATACCATTT+GGG - chr1_2:38548491-38548510 None:intergenic 35.0%
TAACATGCCTTCATACCATT+TGG - chr1_2:38548492-38548511 None:intergenic 35.0%
! TATGAAGGCATGTTATCTAG+TGG + chr1_2:38548497-38548516 Msa0069590:CDS 35.0%
CATGTTATCTAGTGGTTATG+AGG + chr1_2:38548505-38548524 Msa0069590:CDS 35.0%
! TTCTGGACAAGTTGACAATT+GGG + chr1_2:38548580-38548599 Msa0069590:CDS 35.0%
GTCTTGAATGAATGTTGTGT+TGG - chr1_2:38548618-38548637 None:intergenic 35.0%
TTGCAAATGCCAAACAAACT+TGG + chr1_2:38549003-38549022 Msa0069590:three_prime_UTR 35.0%
GGGAAAGCTAATGGTATTTG+AGG - chr1_2:38542844-38542863 None:intergenic 40.0%
AACGTACGAAACATTCTGCA+AGG + chr1_2:38543321-38543340 Msa0069590:CDS 40.0%
AAGCTGCTGTTGAGAAAGAA+AGG + chr1_2:38543410-38543429 Msa0069590:CDS 40.0%
AGCTGCTGTTGAGAAAGAAA+GGG + chr1_2:38543411-38543430 Msa0069590:CDS 40.0%
GGTGATGAGGTTGAACAAAT+TGG + chr1_2:38543474-38543493 Msa0069590:CDS 40.0%
ATAGCATGTTGAAGCTTGTG+AGG + chr1_2:38543587-38543606 Msa0069590:CDS 40.0%
! GCATCTTGAGCTTTATCACT+TGG - chr1_2:38543640-38543659 None:intergenic 40.0%
GTGATAAAGCTCAAGATGCT+AGG + chr1_2:38543641-38543660 Msa0069590:CDS 40.0%
!!! TTGAGTCTACAGTTTTGGCT+TGG + chr1_2:38543673-38543692 Msa0069590:CDS 40.0%
AGTTCAAATGCACCTGTTGT+TGG + chr1_2:38543904-38543923 Msa0069590:CDS 40.0%
! AAATGCACCTGTTGTTGGTT+TGG + chr1_2:38543909-38543928 Msa0069590:CDS 40.0%
TGCAAAACCAAACCAACAAC+AGG - chr1_2:38543919-38543938 None:intergenic 40.0%
TGCTGTGATTATGGAACTTG+AGG + chr1_2:38543978-38543997 Msa0069590:CDS 40.0%
! TTATTCCAATTTTCGCCGGA+GGG + chr1_2:38544016-38544035 Msa0069590:CDS 40.0%
ATCAAAGCTTCAATAGCCCT+TGG - chr1_2:38544165-38544184 None:intergenic 40.0%
! TTTTCCAGACAACTGAAGAG+TGG + chr1_2:38544223-38544242 Msa0069590:CDS 40.0%
!! AGACCCTAAGAGTATTTGCA+AGG - chr1_2:38544447-38544466 None:intergenic 40.0%
GAACGAAGAGGAGAGAAAAA+AGG - chr1_2:38544762-38544781 None:intergenic 40.0%
GTTCCTACATTTCCTTTGTC+TGG - chr1_2:38545617-38545636 None:intergenic 40.0%
!! ATCAATGCTTCTGAAGTCTC+GGG - chr1_2:38545722-38545741 None:intergenic 40.0%
TCTTCTAATGCTGTGGCATA+GGG - chr1_2:38545839-38545858 None:intergenic 40.0%
TTCTTCTAATGCTGTGGCAT+AGG - chr1_2:38545840-38545859 None:intergenic 40.0%
GGAGAGAATCTGTTGGTATA+TGG + chr1_2:38545896-38545915 Msa0069590:CDS 40.0%
TTGGAGAAAAGTAACCGCAT+AGG - chr1_2:38545980-38545999 None:intergenic 40.0%
ATGCTGCAAAACCATGATGA+GGG - chr1_2:38546012-38546031 None:intergenic 40.0%
TATGCTGCAAAACCATGATG+AGG - chr1_2:38546013-38546032 None:intergenic 40.0%
GCTGATGCTGTTCTTCATTT+CGG + chr1_2:38546061-38546080 Msa0069590:CDS 40.0%
CTTTCCAGGCATGAATTCAA+GGG - chr1_2:38546098-38546117 None:intergenic 40.0%
AATATTCCCGATCAGACTGT+CGG - chr1_2:38546149-38546168 None:intergenic 40.0%
TGGAGGAGTAAGATAGCTTA+TGG - chr1_2:38546245-38546264 None:intergenic 40.0%
! CTTGTACAGTCCTGCATTTT+CGG - chr1_2:38546269-38546288 None:intergenic 40.0%
GAAAATGCAGGACTGTACAA+GGG + chr1_2:38546268-38546287 Msa0069590:CDS 40.0%
!! AACTCACAATTTGTTGACCG+CGG - chr1_2:38546348-38546367 None:intergenic 40.0%
ACAAGATCTCGCTCTTTAGT+GGG - chr1_2:38546442-38546461 None:intergenic 40.0%
AACAAGATCTCGCTCTTTAG+TGG - chr1_2:38546443-38546462 None:intergenic 40.0%
! AAAGAGCGAGATCTTGTTGT+TGG + chr1_2:38546445-38546464 Msa0069590:CDS 40.0%
!! AAGAGCGAGATCTTGTTGTT+GGG + chr1_2:38546446-38546465 Msa0069590:CDS 40.0%
! GAAGGTGTATGCTAAGATCA+TGG + chr1_2:38546468-38546487 Msa0069590:CDS 40.0%
CACTCTGAGCTAGTATAGAA+GGG - chr1_2:38546621-38546640 None:intergenic 40.0%
ACACTCTGAGCTAGTATAGA+AGG - chr1_2:38546622-38546641 None:intergenic 40.0%
TCTATACTAGCTCAGAGTGT+AGG + chr1_2:38546622-38546641 Msa0069590:CDS 40.0%
GAGTGTAGGAAGAAACATAG+AGG + chr1_2:38546636-38546655 Msa0069590:CDS 40.0%
ATTAGTAGTGCGCTCTACAA+AGG - chr1_2:38546749-38546768 None:intergenic 40.0%
AGAGCGCACTACTAATAGTA+AGG + chr1_2:38546753-38546772 Msa0069590:CDS 40.0%
GAGCGCACTACTAATAGTAA+GGG + chr1_2:38546754-38546773 Msa0069590:CDS 40.0%
CCTATCACCTCGGTAAAATT+TGG - chr1_2:38546863-38546882 None:intergenic 40.0%
! CCAAATTTTACCGAGGTGAT+AGG + chr1_2:38546860-38546879 Msa0069590:CDS 40.0%
AGTACTTGGGAGAATGTTTG+AGG + chr1_2:38546905-38546924 Msa0069590:CDS 40.0%
! GGGAAGTTTAAAACAAGCCT+TGG + chr1_2:38546951-38546970 Msa0069590:CDS 40.0%
GAAGGTAAATTTGTAGAGCC+AGG + chr1_2:38546973-38546992 Msa0069590:CDS 40.0%
AGGAAAGAATATTCATGCCC+TGG + chr1_2:38547038-38547057 Msa0069590:CDS 40.0%
AGGAATAGATTGTGGATCCA+GGG - chr1_2:38547058-38547077 None:intergenic 40.0%
TAGGAATAGATTGTGGATCC+AGG - chr1_2:38547059-38547078 None:intergenic 40.0%
GCTGTAGTAGGAATAGATTG+TGG - chr1_2:38547066-38547085 None:intergenic 40.0%
TATTCCTACTACAGCAGCAA+TGG + chr1_2:38547071-38547090 Msa0069590:CDS 40.0%
!! AATGGAGAGTGCCAAAATAG+TGG + chr1_2:38547089-38547108 Msa0069590:CDS 40.0%
TGGTAGAGAGATTGCTTGAA+AGG + chr1_2:38547109-38547128 Msa0069590:CDS 40.0%
AATCCGATAGCTGATAACCT+CGG + chr1_2:38547249-38547268 Msa0069590:CDS 40.0%
! CAGAGACCTTTTCATCAATC+AGG + chr1_2:38547356-38547375 Msa0069590:CDS 40.0%
TCAGTTATCACACCGTTGTT+TGG + chr1_2:38547381-38547400 Msa0069590:intron 40.0%
CTTACATAGTTCATCTCTGC+TGG - chr1_2:38547667-38547686 None:intergenic 40.0%
CAGCAGAGATGAACTATGTA+AGG + chr1_2:38547665-38547684 Msa0069590:CDS 40.0%
! CTATGTAAGGAAGCATGCAA+TGG + chr1_2:38547678-38547697 Msa0069590:CDS 40.0%
ATTGGAGAAGATCCTTGTTG+CGG - chr1_2:38547740-38547759 None:intergenic 40.0%
CAGGTTTATGTTTGAGGAGT+AGG - chr1_2:38547773-38547792 None:intergenic 40.0%
CTACTCCTCAAACATAAACC+TGG + chr1_2:38547771-38547790 Msa0069590:CDS 40.0%
TTCTGCTAAGGTACATGTCT+TGG - chr1_2:38547834-38547853 None:intergenic 40.0%
!!! TGAGTCAAGGTTTTGGAAAG+TGG - chr1_2:38547944-38547963 None:intergenic 40.0%
! TTTCCGATGAGTCAAGGTTT+TGG - chr1_2:38547951-38547970 None:intergenic 40.0%
GTAATGACTGACATCAGTGA+GGG - chr1_2:38547977-38547996 None:intergenic 40.0%
AGTAATGACTGACATCAGTG+AGG - chr1_2:38547978-38547997 None:intergenic 40.0%
! AACAACTTTTACCTGGGCAT+TGG - chr1_2:38548085-38548104 None:intergenic 40.0%
! TCATTTTATAACCATCCCCG+AGG + chr1_2:38548192-38548211 Msa0069590:intron 40.0%
GTGAAATTCAAATCTCCTCG+GGG - chr1_2:38548210-38548229 None:intergenic 40.0%
GGTGAAATTCAAATCTCCTC+GGG - chr1_2:38548211-38548230 None:intergenic 40.0%
GGGTGAAATTCAAATCTCCT+CGG - chr1_2:38548212-38548231 None:intergenic 40.0%
! AAGTCGAACTGTCTCTGAAA+GGG - chr1_2:38548444-38548463 None:intergenic 40.0%
TTGAACCCCAAATGGTATGA+AGG + chr1_2:38548482-38548501 Msa0069590:CDS 40.0%
ACATGCCTTCATACCATTTG+GGG - chr1_2:38548490-38548509 None:intergenic 40.0%
AAGAGGCTTACTAACACAGT+TGG + chr1_2:38548545-38548564 Msa0069590:CDS 40.0%
! CTTCTGGACAAGTTGACAAT+TGG + chr1_2:38548579-38548598 Msa0069590:CDS 40.0%
CACAACATTCATTCAAGACG+AGG + chr1_2:38548619-38548638 Msa0069590:CDS 40.0%
CAAACATTCTTGGAAGCCAA+TGG + chr1_2:38548695-38548714 Msa0069590:CDS 40.0%
CAACAGCTATCAATTCAAGG+TGG - chr1_2:38548885-38548904 None:intergenic 40.0%
TGGCAACAGCTATCAATTCA+AGG - chr1_2:38548888-38548907 None:intergenic 40.0%
! GAATTGATAGCTGTTGCCAA+TGG + chr1_2:38548889-38548908 Msa0069590:three_prime_UTR 40.0%
GCATTTGCAACTGCACAAAA+AGG - chr1_2:38548993-38549012 None:intergenic 40.0%
CGTGGCAAACATGTAGTCAT+TGG - chr1_2:38542602-38542621 None:intergenic 45.0%
ATGACTACATGTTTGCCACG+TGG + chr1_2:38542602-38542621 Msa0069590:five_prime_UTR 45.0%
TGACTACATGTTTGCCACGT+GGG + chr1_2:38542603-38542622 Msa0069590:five_prime_UTR 45.0%
! AGTTGTCGGTTACTTAGTCG+AGG + chr1_2:38543282-38543301 Msa0069590:CDS 45.0%
CTGTTGAGAAAGAAAGGGAC+AGG + chr1_2:38543416-38543435 Msa0069590:CDS 45.0%
TGAGAAAGAAAGGGACAGGA+TGG + chr1_2:38543420-38543439 Msa0069590:CDS 45.0%
TTGTTCAACCTCATCACCTC+AGG - chr1_2:38543472-38543491 None:intergenic 45.0%
!!! AGTCTACAGTTTTGGCTTGG+TGG + chr1_2:38543676-38543695 Msa0069590:CDS 45.0%
!!! GTCTACAGTTTTGGCTTGGT+GGG + chr1_2:38543677-38543696 Msa0069590:CDS 45.0%
!! ACTTGAGGCTAAAGGTGCTA+AGG + chr1_2:38543993-38544012 Msa0069590:CDS 45.0%
! GTTATTCCAATTTTCGCCGG+AGG + chr1_2:38544015-38544034 Msa0069590:CDS 45.0%
! CTCACTGGATTTGCTCTTGT+TGG + chr1_2:38544117-38544136 Msa0069590:CDS 45.0%
! ACTGGATTTGCTCTTGTTGG+AGG + chr1_2:38544120-38544139 Msa0069590:CDS 45.0%
! CTGGATTTGCTCTTGTTGGA+GGG + chr1_2:38544121-38544140 Msa0069590:CDS 45.0%
TCAGTTGTCTGGAAAACCAG+TGG - chr1_2:38544219-38544238 None:intergenic 45.0%
TCAACCACTCTTCAGTTGTC+TGG - chr1_2:38544230-38544249 None:intergenic 45.0%
GCAAGCAAGAATGAACGAAG+AGG - chr1_2:38544774-38544793 None:intergenic 45.0%
AGGTGGTGAACTCTGTTGTT+TGG + chr1_2:38545103-38545122 Msa0069590:intron 45.0%
TTCACATGAAGACGACCCTA+AGG - chr1_2:38545488-38545507 None:intergenic 45.0%
CTACATTTCCTTTGTCTGGC+GGG - chr1_2:38545613-38545632 None:intergenic 45.0%
CCTACATTTCCTTTGTCTGG+CGG - chr1_2:38545614-38545633 None:intergenic 45.0%
GAAAACGTTTAGGTACGCAG+CGG - chr1_2:38545639-38545658 None:intergenic 45.0%
GAGTGAGAGCTTGGTATTCA+CGG - chr1_2:38545817-38545836 None:intergenic 45.0%
AAAATTGGGGAAAGCCTCCT+GGG + chr1_2:38545858-38545877 Msa0069590:CDS 45.0%
CAACCTACATTTGGCTACGA+AGG + chr1_2:38545950-38545969 Msa0069590:CDS 45.0%
TCACCTTCGTAGCCAAATGT+AGG - chr1_2:38545956-38545975 None:intergenic 45.0%
ATGATGAGGGCTTGCAGATT+TGG - chr1_2:38545999-38546018 None:intergenic 45.0%
AAATCTGCAAGCCCTCATCA+TGG + chr1_2:38545998-38546017 Msa0069590:CDS 45.0%
GTTCTTCATTTCGGCACACA+CGG + chr1_2:38546070-38546089 Msa0069590:CDS 45.0%
GCTTTCCAGGCATGAATTCA+AGG - chr1_2:38546099-38546118 None:intergenic 45.0%
TGAATTCATGCCTGGAAAGC+AGG + chr1_2:38546099-38546118 Msa0069590:CDS 45.0%
TGTTATCCCGACAGTCTGAT+CGG + chr1_2:38546139-38546158 Msa0069590:CDS 45.0%
ATATTCCCGATCAGACTGTC+GGG - chr1_2:38546148-38546167 None:intergenic 45.0%
CGAAAATGCAGGACTGTACA+AGG + chr1_2:38546267-38546286 Msa0069590:CDS 45.0%
TATCAGTCACTCAAGGACAC+TGG + chr1_2:38546322-38546341 Msa0069590:CDS 45.0%
ATGCAATCTCGACAAGGATG+TGG + chr1_2:38546390-38546409 Msa0069590:CDS 45.0%
CTGAGCTAGTATAGAAGGGA+GGG - chr1_2:38546617-38546636 None:intergenic 45.0%
TCTGAGCTAGTATAGAAGGG+AGG - chr1_2:38546618-38546637 None:intergenic 45.0%
! CAAATAACCGAAGCATCACG+CGG + chr1_2:38546712-38546731 Msa0069590:CDS 45.0%
CTTACCTCCATCCTTGGATT+CGG + chr1_2:38546802-38546821 Msa0069590:CDS 45.0%
GTTTATGCCGAATCCAAGGA+TGG - chr1_2:38546812-38546831 None:intergenic 45.0%
GCCATGGATTCAGTACTTGT+CGG + chr1_2:38546834-38546853 Msa0069590:CDS 45.0%
!! TCCGACAAGTACTGAATCCA+TGG - chr1_2:38546838-38546857 None:intergenic 45.0%
! TCGGACACCAAATTTTACCG+AGG + chr1_2:38546853-38546872 Msa0069590:CDS 45.0%
! TGAGCTTTTCCCTATCACCT+CGG - chr1_2:38546873-38546892 None:intergenic 45.0%
AAATTTGTAGAGCCAGGACC+TGG + chr1_2:38546979-38546998 Msa0069590:CDS 45.0%
ATCTGTTCCCCACAGTACAA+GGG - chr1_2:38547175-38547194 None:intergenic 45.0%
TATCTGTTCCCCACAGTACA+AGG - chr1_2:38547176-38547195 None:intergenic 45.0%
ATATGGAGAATCCCTTGCTC+AGG + chr1_2:38547206-38547225 Msa0069590:CDS 45.0%
CTTCCGAGGTTATCAGCTAT+CGG - chr1_2:38547255-38547274 None:intergenic 45.0%
GATAGCTGATAACCTCGGAA+GGG + chr1_2:38547254-38547273 Msa0069590:CDS 45.0%
CAAGGCTTACAGGTTCTACA+CGG - chr1_2:38547284-38547303 None:intergenic 45.0%
TAGGTCTTCCAAGCTCTTCA+AGG - chr1_2:38547302-38547321 None:intergenic 45.0%
TTGAAGAGCTTGGAAGACCT+AGG + chr1_2:38547301-38547320 Msa0069590:CDS 45.0%
TGAAGAGCTTGGAAGACCTA+GGG + chr1_2:38547302-38547321 Msa0069590:CDS 45.0%
TTAACGACAACGTCAACCCT+AGG - chr1_2:38547321-38547340 None:intergenic 45.0%
GACGTTGTCGTTAATTGCTC+TGG + chr1_2:38547327-38547346 Msa0069590:CDS 45.0%
TCTGGATAGAGCAGTGAAGA+TGG + chr1_2:38547624-38547643 Msa0069590:CDS 45.0%
!! CTCTGCTGGTTCGTCTAATT+CGG - chr1_2:38547653-38547672 None:intergenic 45.0%
TTCTCGAACTTCAACCCCTA+GGG - chr1_2:38547716-38547735 None:intergenic 45.0%
CACAGCCAGGTTTATGTTTG+AGG - chr1_2:38547779-38547798 None:intergenic 45.0%
CTCAAACATAAACCTGGCTG+TGG + chr1_2:38547777-38547796 Msa0069590:CDS 45.0%
ATGAAGAATTCTCCACAGCC+AGG - chr1_2:38547792-38547811 None:intergenic 45.0%
TGGCTGTGGAGAATTCTTCA+TGG + chr1_2:38547791-38547810 Msa0069590:CDS 45.0%
!! GCTTTTGATTGTGATGCTCC+TGG + chr1_2:38547862-38547881 Msa0069590:CDS 45.0%
AATTCAAATCTCCTCGGGGA+TGG - chr1_2:38548206-38548225 None:intergenic 45.0%
CCAGAACACAGAGTCTATGT+AGG - chr1_2:38548358-38548377 None:intergenic 45.0%
CCTACATAGACTCTGTGTTC+TGG + chr1_2:38548355-38548374 Msa0069590:intron 45.0%
CAAGTCGAACTGTCTCTGAA+AGG - chr1_2:38548445-38548464 None:intergenic 45.0%
!! CTAGTGGTTATGAGGGTGTT+CGG + chr1_2:38548513-38548532 Msa0069590:CDS 45.0%
!! TAGTGGTTATGAGGGTGTTC+GGG + chr1_2:38548514-38548533 Msa0069590:CDS 45.0%
GGCTTACTAACACAGTTGGA+TGG + chr1_2:38548549-38548568 Msa0069590:CDS 45.0%
GAAGCTGGTGCAAACATTCT+TGG + chr1_2:38548685-38548704 Msa0069590:CDS 45.0%
ACAACAGGGAAAAAGGGGAA+AGG - chr1_2:38548941-38548960 None:intergenic 45.0%
CAGCTGCTGAGACTGATGAT+TGG - chr1_2:38543222-38543241 None:intergenic 50.0%
! GGACAGGATGGATGCAGTTT+TGG + chr1_2:38543432-38543451 Msa0069590:CDS 50.0%
GGTGTTTCCATCAATGCCTG+AGG + chr1_2:38543453-38543472 Msa0069590:CDS 50.0%
!! CTCATCACCTCAGGCATTGA+TGG - chr1_2:38543463-38543482 None:intergenic 50.0%
CATCAATGCCTGAGGTGATG+AGG + chr1_2:38543461-38543480 Msa0069590:CDS 50.0%
GCTTGTGAGGACTTTGCCTA+AGG + chr1_2:38543600-38543619 Msa0069590:CDS 50.0%
TCTAACCCTCCGGCGAAAAT+TGG - chr1_2:38544024-38544043 None:intergenic 50.0%
! CGCCGGAGGGTTAGATTTTT+CGG + chr1_2:38544029-38544048 Msa0069590:CDS 50.0%
! GCCGGAGGGTTAGATTTTTC+GGG + chr1_2:38544030-38544049 Msa0069590:CDS 50.0%
CCCCGAAAAATCTAACCCTC+CGG - chr1_2:38544034-38544053 None:intergenic 50.0%
! CCGGAGGGTTAGATTTTTCG+GGG + chr1_2:38544031-38544050 Msa0069590:CDS 50.0%
!!! AGGGTTAGATTTTTCGGGGC+CGG + chr1_2:38544035-38544054 Msa0069590:CDS 50.0%
TGCTAGGCAGGATCATCCAA+GGG + chr1_2:38544146-38544165 Msa0069590:CDS 50.0%
GTTGCATTGCCAGAGCTAGA+TGG + chr1_2:38544291-38544310 Msa0069590:CDS 50.0%
! TCCATTCCTCCATCTAGCTC+TGG - chr1_2:38544303-38544322 None:intergenic 50.0%
! ATGGAGCCGATAGTTTTCGC+TGG + chr1_2:38544318-38544337 Msa0069590:CDS 50.0%
! AGCCGATAGTTTTCGCTGGT+CGG + chr1_2:38544322-38544341 Msa0069590:CDS 50.0%
TCCCGACCAGCGAAAACTAT+CGG - chr1_2:38544327-38544346 None:intergenic 50.0%
TCACGCTCTTCACAAGAGAG+TGG + chr1_2:38544833-38544852 Msa0069590:CDS 50.0%
TTTGCACCAGGGCAATCAGA+TGG + chr1_2:38544862-38544881 Msa0069590:CDS 50.0%
TTGCACCAGGGCAATCAGAT+GGG + chr1_2:38544863-38544882 Msa0069590:CDS 50.0%
TTCAGTTTCCCGCCAGACAA+AGG + chr1_2:38545602-38545621 Msa0069590:CDS 50.0%
CCGCCAGACAAAGGAAATGT+AGG + chr1_2:38545611-38545630 Msa0069590:CDS 50.0%
GAAAATTGGGGAAAGCCTCC+TGG + chr1_2:38545857-38545876 Msa0069590:CDS 50.0%
TGCGGATGGAGAGAATCTGT+TGG + chr1_2:38545889-38545908 Msa0069590:CDS 50.0%
GCTACGAAGGTGATCCTATG+CGG + chr1_2:38545963-38545982 Msa0069590:CDS 50.0%
GGTTCCCTTGAATTCATGCC+TGG + chr1_2:38546091-38546110 Msa0069590:CDS 50.0%
TTCATGCCTGGAAAGCAGGT+AGG + chr1_2:38546103-38546122 Msa0069590:CDS 50.0%
TCATGCCTGGAAAGCAGGTA+GGG + chr1_2:38546104-38546123 Msa0069590:CDS 50.0%
GTTATCCCGACAGTCTGATC+GGG + chr1_2:38546140-38546159 Msa0069590:CDS 50.0%
TGCTGCAAACAACCCTTCAG+AGG + chr1_2:38546186-38546205 Msa0069590:CDS 50.0%
TGGCTATGGTAGCCTCTGAA+GGG - chr1_2:38546201-38546220 None:intergenic 50.0%
TTGGCTATGGTAGCCTCTGA+AGG - chr1_2:38546202-38546221 None:intergenic 50.0%
ATTTGCGTAGCTCCTGCGTT+TGG - chr1_2:38546221-38546240 None:intergenic 50.0%
! TACAGTCCTGCATTTTCGGC+TGG - chr1_2:38546265-38546284 None:intergenic 50.0%
CTCGTCGTATCAGTCACTCA+AGG + chr1_2:38546315-38546334 Msa0069590:CDS 50.0%
CAAGGATGTGGATTTGCCAG+AGG + chr1_2:38546402-38546421 Msa0069590:CDS 50.0%
GATGTGGATTTGCCAGAGGA+GGG + chr1_2:38546406-38546425 Msa0069590:CDS 50.0%
!! GCGAGATCTTGTTGTTGGGA+AGG + chr1_2:38546450-38546469 Msa0069590:CDS 50.0%
CCAATGACATGGAGTCCACA+AGG - chr1_2:38546514-38546533 None:intergenic 50.0%
CCTTGTGGACTCCATGTCAT+TGG + chr1_2:38546511-38546530 Msa0069590:CDS 50.0%
CATAGCTGCACTTGATCGTG+TGG + chr1_2:38546576-38546595 Msa0069590:CDS 50.0%
GCACTTGATCGTGTGGAAGA+AGG + chr1_2:38546583-38546602 Msa0069590:CDS 50.0%
AGCTAGTATAGAAGGGAGGG+AGG - chr1_2:38546614-38546633 None:intergenic 50.0%
AATTGCTCCGCGTGATGCTT+CGG - chr1_2:38546722-38546741 None:intergenic 50.0%
TATGCCGAATCCAAGGATGG+AGG - chr1_2:38546809-38546828 None:intergenic 50.0%
GCTCGTTTATGCCGAATCCA+AGG - chr1_2:38546816-38546835 None:intergenic 50.0%
GATTCGGCATAAACGAGCCA+TGG + chr1_2:38546818-38546837 Msa0069590:CDS 50.0%
CTCTCCATTGCTGCTGTAGT+AGG - chr1_2:38547078-38547097 None:intergenic 50.0%
AGTACAAGGGCAACTGTCTC+AGG - chr1_2:38547162-38547181 None:intergenic 50.0%
AGACAGTTGCCCTTGTACTG+TGG + chr1_2:38547163-38547182 Msa0069590:CDS 50.0%
GACAGTTGCCCTTGTACTGT+GGG + chr1_2:38547164-38547183 Msa0069590:CDS 50.0%
ACAGTTGCCCTTGTACTGTG+GGG + chr1_2:38547165-38547184 Msa0069590:CDS 50.0%
AATCCCTTGCTCAGGTTCTG+TGG + chr1_2:38547214-38547233 Msa0069590:CDS 50.0%
CATCCACAGAACCTGAGCAA+GGG - chr1_2:38547220-38547239 None:intergenic 50.0%
TCATCCACAGAACCTGAGCA+AGG - chr1_2:38547221-38547240 None:intergenic 50.0%
GCTCAGGTTCTGTGGATGAT+TGG + chr1_2:38547222-38547241 Msa0069590:CDS 50.0%
CGATAGCTGATAACCTCGGA+AGG + chr1_2:38547253-38547272 Msa0069590:CDS 50.0%
CCAAGCTCTTCAAGGCTTAC+AGG - chr1_2:38547294-38547313 None:intergenic 50.0%
CCTGTAAGCCTTGAAGAGCT+TGG + chr1_2:38547291-38547310 Msa0069590:CDS 50.0%
ATGGAACAAGCTGAAGCCCT+AGG + chr1_2:38547697-38547716 Msa0069590:CDS 50.0%
TGGAACAAGCTGAAGCCCTA+GGG + chr1_2:38547698-38547717 Msa0069590:CDS 50.0%
CTTCTCGAACTTCAACCCCT+AGG - chr1_2:38547717-38547736 None:intergenic 50.0%
AAGTTCGAGAAGCCGCAACA+AGG + chr1_2:38547725-38547744 Msa0069590:CDS 50.0%
AGGATCTTCTCCAATGCCTC+AGG + chr1_2:38547745-38547764 Msa0069590:CDS 50.0%
GTTTGAGGAGTAGGATCCTG+AGG - chr1_2:38547764-38547783 None:intergenic 50.0%
! TTTTCAGTCATGCCTGCACC+AGG - chr1_2:38547883-38547902 None:intergenic 50.0%
GGGAGATTTCCGATGAGTCA+AGG - chr1_2:38547957-38547976 None:intergenic 50.0%
!!! TTTTACCTGGGCATTGGCAG+TGG - chr1_2:38548079-38548098 None:intergenic 50.0%
! TGAAAGGGTGCGTACCTGAA+AGG - chr1_2:38548429-38548448 None:intergenic 50.0%
! CCATTTGGGGTTCAACAGCT+TGG - chr1_2:38548477-38548496 None:intergenic 50.0%
CCAAGCTGTTGAACCCCAAA+TGG + chr1_2:38548474-38548493 Msa0069590:CDS 50.0%
GTGTTCGGGAAATCGAGAAG+AGG + chr1_2:38548528-38548547 Msa0069590:CDS 50.0%
GTTGGATGGAGTGCAACTTC+TGG + chr1_2:38548563-38548582 Msa0069590:CDS 50.0%
GCACAAATCCCAACTCCTTC+AGG + chr1_2:38548663-38548682 Msa0069590:CDS 50.0%
ACCAGCTTCCTGAAGGAGTT+GGG - chr1_2:38548674-38548693 None:intergenic 50.0%
TGTTTGCACCAGCTTCCTGA+AGG - chr1_2:38548681-38548700 None:intergenic 50.0%
TTCTTGGAAGCCAATGGACG+CGG + chr1_2:38548701-38548720 Msa0069590:CDS 50.0%
AAGCCAATGGACGCGGATAT+TGG + chr1_2:38548708-38548727 Msa0069590:CDS 50.0%
AGCCAATGGACGCGGATATT+GGG + chr1_2:38548709-38548728 Msa0069590:CDS 50.0%
TTCCCAATATCCGCGTCCAT+TGG - chr1_2:38548714-38548733 None:intergenic 50.0%
GAGGCAGTTGTACTCAGAAG+TGG + chr1_2:38548760-38548779 Msa0069590:CDS 50.0%
TGGTGAAAGTTTGGCCCACG+TGG - chr1_2:38542620-38542639 None:intergenic 55.0%
CTTGGATGATCCTGCCTAGC+AGG - chr1_2:38544147-38544166 None:intergenic 55.0%
CTGCTAGGCAGGATCATCCA+AGG + chr1_2:38544145-38544164 Msa0069590:CDS 55.0%
GCATTGCCAGAGCTAGATGG+AGG + chr1_2:38544294-38544313 Msa0069590:CDS 55.0%
GCCAGAGCTAGATGGAGGAA+TGG + chr1_2:38544299-38544318 Msa0069590:CDS 55.0%
! GCCGATAGTTTTCGCTGGTC+GGG + chr1_2:38544323-38544342 Msa0069590:CDS 55.0%
AGTGGAGCAGCTTTGCACCA+GGG + chr1_2:38544851-38544870 Msa0069590:CDS 55.0%
TGGCATAGGGAGTGAGAGCT+TGG - chr1_2:38545826-38545845 None:intergenic 55.0%
GCCTCCTGGGAATCTGAATG+CGG + chr1_2:38545871-38545890 Msa0069590:CDS 55.0%
TCCGCATTCAGATTCCCAGG+AGG - chr1_2:38545875-38545894 None:intergenic 55.0%
CCATCCGCATTCAGATTCCC+AGG - chr1_2:38545878-38545897 None:intergenic 55.0%
CCTGGGAATCTGAATGCGGA+TGG + chr1_2:38545875-38545894 Msa0069590:CDS 55.0%
CTCATCCCTACCTGCTTTCC+AGG - chr1_2:38546112-38546131 None:intergenic 55.0%
AGGCTACCATAGCCAAACGC+AGG + chr1_2:38546206-38546225 Msa0069590:CDS 55.0%
GTAGCTCCTGCGTTTGGCTA+TGG - chr1_2:38546215-38546234 None:intergenic 55.0%
ACTCCTCCAGCCGAAAATGC+AGG + chr1_2:38546256-38546275 Msa0069590:CDS 55.0%
! AGTCCTGCATTTTCGGCTGG+AGG - chr1_2:38546262-38546281 None:intergenic 55.0%
GGATGTGGATTTGCCAGAGG+AGG + chr1_2:38546405-38546424 Msa0069590:CDS 55.0%
CATGGAGTCCACAAGGCAAC+AGG - chr1_2:38546507-38546526 None:intergenic 55.0%
TGGGTGGCTCACCAATGACA+TGG - chr1_2:38546525-38546544 None:intergenic 55.0%
TTTGTAGAGCCAGGACCTGG+AGG + chr1_2:38546982-38547001 Msa0069590:CDS 55.0%
GGAACAAGCTGAAGCCCTAG+GGG + chr1_2:38547699-38547718 Msa0069590:CDS 55.0%
GGAGTAGGATCCTGAGGCAT+TGG - chr1_2:38547758-38547777 None:intergenic 55.0%
GATTGTGATGCTCCTGGTGC+AGG + chr1_2:38547868-38547887 Msa0069590:CDS 55.0%
TCCCAACTCCTTCAGGAAGC+TGG + chr1_2:38548670-38548689 Msa0069590:CDS 55.0%
CACCAGCTTCCTGAAGGAGT+TGG - chr1_2:38548675-38548694 None:intergenic 55.0%
CTCTTGTTGGAGGGCCTGCT+AGG + chr1_2:38544130-38544149 Msa0069590:CDS 60.0%
GCTGGTCGGGATCCCAAAAC+AGG + chr1_2:38544336-38544355 Msa0069590:CDS 60.0%
GAGTGGAGCAGCTTTGCACC+AGG + chr1_2:38544850-38544869 Msa0069590:CDS 60.0%
CTCAGCCCATCTGATTGCCC+TGG - chr1_2:38544871-38544890 None:intergenic 60.0%
TCACTCAAGGACACTGGCCG+CGG + chr1_2:38546328-38546347 Msa0069590:CDS 60.0%
GGATTTGCCAGAGGAGGGTG+TGG + chr1_2:38546411-38546430 Msa0069590:CDS 60.0%
GAGTCCACAAGGCAACAGGC+GGG - chr1_2:38546503-38546522 None:intergenic 60.0%
GGAGTCCACAAGGCAACAGG+CGG - chr1_2:38546504-38546523 None:intergenic 60.0%
TTTCTGATCGGGTCGCCTCC+AGG - chr1_2:38547000-38547019 None:intergenic 60.0%
CTACACGGTTGACCCTTCCG+AGG - chr1_2:38547269-38547288 None:intergenic 60.0%
TACCACCACTGCCAATGCCC+AGG + chr1_2:38548071-38548090 Msa0069590:CDS 60.0%
!! TACCTGGGCATTGGCAGTGG+TGG - chr1_2:38548076-38548095 None:intergenic 60.0%
TGTTGGAGGGCCTGCTAGGC+AGG + chr1_2:38544134-38544153 Msa0069590:CDS 65.0%
GGAAGCTCCACACCCTCCTC+TGG - chr1_2:38546421-38546440 None:intergenic 65.0%
GAGTCCCGCCTGTTGCCTTG+TGG + chr1_2:38546496-38546515 Msa0069590:CDS 65.0%
TGGTGAGCCACCCACAGCCA+TGG + chr1_2:38546531-38546550 Msa0069590:CDS 65.0%
ATCGGGTCGCCTCCAGGTCC+TGG - chr1_2:38546994-38547013 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 38542560 38549075 38542560 ID=Msa0069590;Name=Msa0069590
chr1_2 mRNA 38542560 38549075 38542560 ID=Msa0069590-mRNA-1;Parent=Msa0069590;Name=Msa0069590-mRNA-1;_AED=0.00;_eAED=0.00;_QI=387|1|1|1|1|1|5|264|1383
chr1_2 exon 38542560 38544357 38542560 ID=Msa0069590-mRNA-1:exon:12018;Parent=Msa0069590-mRNA-1
chr1_2 exon 38544826 38544908 38544826 ID=Msa0069590-mRNA-1:exon:12019;Parent=Msa0069590-mRNA-1
chr1_2 exon 38545575 38547377 38545575 ID=Msa0069590-mRNA-1:exon:12020;Parent=Msa0069590-mRNA-1
chr1_2 exon 38547616 38548092 38547616 ID=Msa0069590-mRNA-1:exon:12021;Parent=Msa0069590-mRNA-1
chr1_2 exon 38548434 38549075 38548434 ID=Msa0069590-mRNA-1:exon:12022;Parent=Msa0069590-mRNA-1
chr1_2 five_prime_UTR 38542560 38542946 38542560 ID=Msa0069590-mRNA-1:five_prime_utr;Parent=Msa0069590-mRNA-1
chr1_2 CDS 38542947 38544357 38542947 ID=Msa0069590-mRNA-1:cds;Parent=Msa0069590-mRNA-1
chr1_2 CDS 38544826 38544908 38544826 ID=Msa0069590-mRNA-1:cds;Parent=Msa0069590-mRNA-1
chr1_2 CDS 38545575 38547377 38545575 ID=Msa0069590-mRNA-1:cds;Parent=Msa0069590-mRNA-1
chr1_2 CDS 38547616 38548092 38547616 ID=Msa0069590-mRNA-1:cds;Parent=Msa0069590-mRNA-1
chr1_2 CDS 38548434 38548811 38548434 ID=Msa0069590-mRNA-1:cds;Parent=Msa0069590-mRNA-1
chr1_2 three_prime_UTR 38548812 38549075 38548812 ID=Msa0069590-mRNA-1:three_prime_utr;Parent=Msa0069590-mRNA-1
Gene Sequence

>Msa0069590

ATGGCTTCATTTTTATCAACACCATTTACTCTACCAAATTCTAAAGTTGATCAACTTTCTTCAGTTGCTCAAAGACATCTTTTTCTTCATTCATTCCTTCCTAAGAAAACCAATTACTATGGTAACTCAAAAGCTTCCTTTAGATTGAAATGCAATGCAATTGGTAATGGTTTGTTCACTCAAACAACTCAAGAAGTTCGTAGAATAGTACCAGAAAACAAGCAAAACTTACCAACAGTGAAAATTGTGTATGTTGTTCTTGAAGCTCAGTACCAATCATCAGTCTCAGCAGCTGTTAGAGAACTCAACAGCAATCAGAATGATGCTTCTTTTGAAGTTGTCGGTTACTTAGTCGAGGAGCTTCGCGACAAATCAACGTACGAAACATTCTGCAAGGATTTAGAAGATGCTAATATCTTCATTGGTTCATTGATTTTTGTTGAGGAGCTAGCACTGAAAGTGAAAGCTGCTGTTGAGAAAGAAAGGGACAGGATGGATGCAGTTTTGGTGTTTCCATCAATGCCTGAGGTGATGAGGTTGAACAAATTGGGCTCTTTTAGTATGTCACAACTTGGACAATCTAAAAGTCCTTTTTTTCAGCTTTTCAAGAAGAAGAATACTTCTTCAGCTGGTTTTGCTGATAGCATGTTGAAGCTTGTGAGGACTTTGCCTAAGGTTTTGAAGTATTTACCAAGTGATAAAGCTCAAGATGCTAGGCTTTATATCTTGAGTCTACAGTTTTGGCTTGGTGGGTCACCTGATAATTTGCAGAATTTCTTGAAGATGATTTCTGGTTCTTATGTTCCAGCATTGAAAGGTACAAAGATGGAGTATTCTGATCCTGTTTTGTTTTTAGATAATGGAATTTGGCACCCTTTAGCACCTTGTATGTATGATGATGTCAAAGAGTATTTGAATTGGTATGGAACTAGAAGGGATGCTAATGAGAAACTAAAGAGTTCAAATGCACCTGTTGTTGGTTTGGTTTTGCAAAGGAGTCATATTGTTACTGGTGATGATGGTCATTACGTTGCTGTGATTATGGAACTTGAGGCTAAAGGTGCTAAGGTTATTCCAATTTTCGCCGGAGGGTTAGATTTTTCGGGGCCGGTTGAGAAGTTCTTCATTGATCCTATTACTAAGAAACCATTTGTGAATTCTGTGATATCTCTCACTGGATTTGCTCTTGTTGGAGGGCCTGCTAGGCAGGATCATCCAAGGGCTATTGAAGCTTTGATGAAGCTTGATGTTCCTTATATTGTTGCTTTGCCACTGGTTTTCCAGACAACTGAAGAGTGGTTGAATAGTACTTTGGGTTTGCATCCAATTCAAGTTGCTCTTCAAGTTGCATTGCCAGAGCTAGATGGAGGAATGGAGCCGATAGTTTTCGCTGGTCGGGATCCCAAAACAGGAAAATCTCACGCTCTTCACAAGAGAGTGGAGCAGCTTTGCACCAGGGCAATCAGATGGGCTGAGTTGAAAAGAAAAACAAAGGAAGACAAGAAACTAGCAATCACTGTCTTCAGTTTCCCGCCAGACAAAGGAAATGTAGGAACCGCTGCGTACCTAAACGTTTTCTCCTCCATTTTCTCTGTTCTAAAAGAACTTCAAAGTGATGGTTACAATGTTGAAGGTCTTCCCGAGACTTCAGAAGCATTGATTGAAGATATATTACATGACAAAGAAGCACAATTCAGCAGCCCAAATCTCAACATTGCTTACAAAATGAACGTCCGTGAATACCAAGCTCTCACTCCCTATGCCACAGCATTAGAAGAAAATTGGGGAAAGCCTCCTGGGAATCTGAATGCGGATGGAGAGAATCTGTTGGTATATGGTAAGCAATATGGTAATGTATTCATAGGTGTTCAACCTACATTTGGCTACGAAGGTGATCCTATGCGGTTACTTTTCTCCAAATCTGCAAGCCCTCATCATGGTTTTGCAGCATATTACTCTTTTGTCGAGAAAATTTTCAAAGCTGATGCTGTTCTTCATTTCGGCACACACGGTTCCCTTGAATTCATGCCTGGAAAGCAGGTAGGGATGAGTGATGTATGTTATCCCGACAGTCTGATCGGGAATATTCCAAATGTCTATTACTATGCTGCAAACAACCCTTCAGAGGCTACCATAGCCAAACGCAGGAGCTACGCAAATACCATAAGCTATCTTACTCCTCCAGCCGAAAATGCAGGACTGTACAAGGGTCTTAAGCAGTTAAGTGAACTCATCTCGTCGTATCAGTCACTCAAGGACACTGGCCGCGGTCAACAAATTGTGAGTTCAATTATTAGCACGGCTAAACAATGCAATCTCGACAAGGATGTGGATTTGCCAGAGGAGGGTGTGGAGCTTCCCACTAAAGAGCGAGATCTTGTTGTTGGGAAGGTGTATGCTAAGATCATGGAGATTGAGTCCCGCCTGTTGCCTTGTGGACTCCATGTCATTGGTGAGCCACCCACAGCCATGGAAGCAGTTGCTACATTGGTGAACATAGCTGCACTTGATCGTGTGGAAGAAGGTATTTCCTCCCTCCCTTCTATACTAGCTCAGAGTGTAGGAAGAAACATAGAGGAAATTTATAGAAGCAGTGACAAAGGAGTATTAAAGGATGTAGAGCTTCTTCGGCAAATAACCGAAGCATCACGCGGAGCAATTACTTCCTTTGTAGAGCGCACTACTAATAGTAAGGGTCAAGTTGTAGATGTATCTAATAAACTTACCTCCATCCTTGGATTCGGCATAAACGAGCCATGGATTCAGTACTTGTCGGACACCAAATTTTACCGAGGTGATAGGGAAAAGCTCAGAATTTTGTTTGAGTACTTGGGAGAATGTTTGAGGTTAATTGTAGCTGATAATGAAGTGGGAAGTTTAAAACAAGCCTTGGAAGGTAAATTTGTAGAGCCAGGACCTGGAGGCGACCCGATCAGAAACCCTAAAGTTTTACCAACAGGAAAGAATATTCATGCCCTGGATCCACAATCTATTCCTACTACAGCAGCAATGGAGAGTGCCAAAATAGTGGTAGAGAGATTGCTTGAAAGGCAAAAAATTGATAATGGAGGAAAGTATCCTGAGACAGTTGCCCTTGTACTGTGGGGAACAGATAATATTAAGACATATGGAGAATCCCTTGCTCAGGTTCTGTGGATGATTGGTGTAAATCCGATAGCTGATAACCTCGGAAGGGTCAACCGTGTAGAACCTGTAAGCCTTGAAGAGCTTGGAAGACCTAGGGTTGACGTTGTCGTTAATTGCTCTGGAGTATTCAGAGACCTTTTCATCAATCAGATGAATCTTCTGGATAGAGCAGTGAAGATGGTTGCCGAATTAGACGAACCAGCAGAGATGAACTATGTAAGGAAGCATGCAATGGAACAAGCTGAAGCCCTAGGGGTTGAAGTTCGAGAAGCCGCAACAAGGATCTTCTCCAATGCCTCAGGATCCTACTCCTCAAACATAAACCTGGCTGTGGAGAATTCTTCATGGAATGATGAGAAGCAGCTCCAAGACATGTACCTTAGCAGAAAGTCTTTTGCTTTTGATTGTGATGCTCCTGGTGCAGGCATGACTGAAAAAAGACAAGTCTTTGAGATGGCTCTCAGCACAGCAGACGCCACTTTCCAAAACCTTGACTCATCGGAAATCTCCCTCACTGATGTCAGTCATTACTTTGATTCAGACCCCACTAACCTTGTTCAAAATTTAAGGAAAGATGGGAAGAAGCCAAGTGCATATATTGCTGATACCACCACTGCCAATGCCCAGGTACGCACCCTTTCAGAGACAGTTCGACTTGATGCAAGAACCAAGCTGTTGAACCCCAAATGGTATGAAGGCATGTTATCTAGTGGTTATGAGGGTGTTCGGGAAATCGAGAAGAGGCTTACTAACACAGTTGGATGGAGTGCAACTTCTGGACAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATTCAAGACGAGGAAATGTTGAAGAAGCTGATGAGCACAAATCCCAACTCCTTCAGGAAGCTGGTGCAAACATTCTTGGAAGCCAATGGACGCGGATATTGGGAAACTGAAGAAGAAAACATTGAGAAGTTGAGGCAGTTGTACTCAGAAGTGGAAGATAAAATTGAAGGCATTGATCGCTGA
Protein sequence

>Msa0069590

MASFLSTPFTLPNSKVDQLSSVAQRHLFLHSFLPKKTNYYGNSKASFRLKCNAIGNGLFTQTTQEVRRIVPENKQNLPTVKIVYVVLEAQYQSSVSAAVRELNSNQNDASFEVVGYLVEELRDKSTYETFCKDLEDANIFIGSLIFVEELALKVKAAVEKERDRMDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKNTSSAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALKGTKMEYSDPVLFLDNGIWHPLAPCMYDDVKEYLNWYGTRRDANEKLKSSNAPVVGLVLQRSHIVTGDDGHYVAVIMELEAKGAKVIPIFAGGLDFSGPVEKFFIDPITKKPFVNSVISLTGFALVGGPARQDHPRAIEALMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPKTGKSHALHKRVEQLCTRAIRWAELKRKTKEDKKLAITVFSFPPDKGNVGTAAYLNVFSSIFSVLKELQSDGYNVEGLPETSEALIEDILHDKEAQFSSPNLNIAYKMNVREYQALTPYATALEENWGKPPGNLNADGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGQQIVSSIISTAKQCNLDKDVDLPEEGVELPTKERDLVVGKVYAKIMEIESRLLPCGLHVIGEPPTAMEAVATLVNIAALDRVEEGISSLPSILAQSVGRNIEEIYRSSDKGVLKDVELLRQITEASRGAITSFVERTTNSKGQVVDVSNKLTSILGFGINEPWIQYLSDTKFYRGDREKLRILFEYLGECLRLIVADNEVGSLKQALEGKFVEPGPGGDPIRNPKVLPTGKNIHALDPQSIPTTAAMESAKIVVERLLERQKIDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVNPIADNLGRVNRVEPVSLEELGRPRVDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPAEMNYVRKHAMEQAEALGVEVREAATRIFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDCDAPGAGMTEKRQVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEEMLKKLMSTNPNSFRKLVQTFLEANGRGYWETEEENIEKLRQLYSEVEDKIEGIDR*